Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 38 of 208
Found at i:14793526 original size:4 final size:4
Alignment explanation
Indices: 14793508--14793542 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
14793498 TCTGGGAGGG
14793508 TTCT TT-T TCTCT TTCT TTCT TTCT TTCT TTCT TTC
1 TTCT TTCT T-TCT TTCT TTCT TTCT TTCT TTCT TTC
14793543 AAGTTCTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 2 0.07
4 25 0.86
5 2 0.07
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTCT
Found at i:14802973 original size:31 final size:29
Alignment explanation
Indices: 14802938--14802997 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
14802928 GTGATCACTT
14802938 CGTAACACAATAATAACATAAGTGACTAAAA
1 CGTAACA-AATAA-AACATAAGTGACTAAAA
** *
14802969 CGTAACATTTCAAACATAAGTGACTAAAA
1 CGTAACAAATAAAACATAAGTGACTAAAA
14802998 TATAACCTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 17 0.65
30 2 0.08
31 7 0.27
ACGTcount: A:0.52, C:0.17, G:0.10, T:0.22
Consensus pattern (29 bp):
CGTAACAAATAAAACATAAGTGACTAAAA
Found at i:14806127 original size:41 final size:41
Alignment explanation
Indices: 14806070--14806220 Score: 198
Period size: 41 Copynumber: 3.7 Consensus size: 41
14806060 TTTTGTAAGT
*
14806070 TCAGGCTTTATGCCTAGCAGACTTTATGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
*
14806111 TCAGGCTTTATGCCTAGCAGGC--TCTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
** * * * *
14806150 TCAAACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGTA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
* *
14806191 TCGGGCTTTGTGCCTAGCAGGCTTTATGCC
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCC
14806221 AGTGTTTTAT
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 35 0.37
41 59 0.63
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (41 bp):
TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
Found at i:14807028 original size:24 final size:23
Alignment explanation
Indices: 14806995--14807335 Score: 180
Period size: 23 Copynumber: 14.8 Consensus size: 23
14806985 ATTTAAGCCT
* *
14806995 ATTTGATGTATATATACTGTTAA
1 ATTTGGTGTATATATGCTGTTAA
*
14807018 ATTTTGGTGTA-AAAGTGCTGTTAA
1 A-TTTGGTGTATATA-TGCTGTTAA
* * * *
14807042 ATTTGGTATGTATATGCTGCT-C
1 ATTTGGTGTATATATGCTGTTAA
* *
14807064 ATTTGTTGTATATATGCTGATAA
1 ATTTGGTGTATATATGCTGTTAA
* * * *
14807087 ATTTTGGTGTAAAAATGCTGCTCA
1 A-TTTGGTGTATATATGCTGTTAA
* * ***
14807111 ATTTGGTATGTATATGCTG-CCC
1 ATTTGGTGTATATATGCTGTTAA
*
14807133 ATTTGTTGTATATATGCTGTTAA
1 ATTTGGTGTATATATGCTGTTAA
*
14807156 ATTTTGGTGTA-AAAGTGCTGTTAA
1 A-TTTGGTGTATATA-TGCTGTTAA
* * *
14807180 ATTTGGTATGTATATGCTGCCT--
1 ATTTGGTGTATATATGCTG-TTAA
*
14807202 ATTTGCTGTATATATGCTGTTAA
1 ATTTGGTGTATATATGCTGTTAA
*
14807225 ATTTTGGTGTA-AAAGTGCTGTTAA
1 A-TTTGGTGTATATA-TGCTGTTAA
* * * *
14807249 ATTTGGTATGTACATGCTGCCT--
1 ATTTGGTGTATATATGCTG-TTAA
** * *
14807271 ATTTACTGTATACATACTGTTAA
1 ATTTGGTGTATATATGCTGTTAA
* * *
14807294 ATTTGGTGTA-AAAGTGATATTAA
1 ATTTGGTGTATATA-TGCTGTTAA
* *
14807317 ATTTGGTATGTATATGCTG
1 ATTTGGTGTATATATGCTG
14807336 CCCATTTGTT
Statistics
Matches: 235, Mismatches: 63, Indels: 40
0.70 0.19 0.12
Matches are distributed among these distances:
21 2 0.01
22 66 0.28
23 86 0.37
24 81 0.34
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.44
Consensus pattern (23 bp):
ATTTGGTGTATATATGCTGTTAA
Found at i:14807077 original size:22 final size:22
Alignment explanation
Indices: 14807042--14807220 Score: 101
Period size: 22 Copynumber: 7.9 Consensus size: 22
14807032 GTGCTGTTAA
* *
14807042 ATTTGGTATGTATATGCTGCTC
1 ATTTGGTGTATATATGCTGCTC
* * *
14807064 ATTTGTTGTATATATGCTGATAA
1 ATTTGGTGTATATATGCTGCT-C
* *
14807087 ATTTTGGTGTAAAAATGCTGCTC
1 A-TTTGGTGTATATATGCTGCTC
* * *
14807110 AATTTGGTATGTATATGCTGCCC
1 -ATTTGGTGTATATATGCTGCTC
* * *
14807133 ATTTGTTGTATATATGCTGTTAA
1 ATTTGGTGTATATATGCTGCT-C
* * *
14807156 ATTTTGGTGTA-AAAGTGCTGTTAA
1 A-TTTGGTGTATATA-TGCTGCT-C
* *
14807180 ATTTGGTATGTATATGCTGC-C
1 ATTTGGTGTATATATGCTGCTC
*
14807201 TATTTGCTGTATATATGCTG
1 -ATTTGGTGTATATATGCTG
14807221 TTAAATTTTG
Statistics
Matches: 118, Mismatches: 31, Indels: 16
0.72 0.19 0.10
Matches are distributed among these distances:
22 49 0.42
23 32 0.27
24 37 0.31
ACGTcount: A:0.24, C:0.10, G:0.21, T:0.45
Consensus pattern (22 bp):
ATTTGGTGTATATATGCTGCTC
Found at i:14807077 original size:69 final size:68
Alignment explanation
Indices: 14806995--14807352 Score: 538
Period size: 69 Copynumber: 5.2 Consensus size: 68
14806985 ATTTAAGCCT
* *
14806995 ATTTGATGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
1 ATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
14807060 GCTC
66 GC-C
* * * *
14807064 ATTTGTTGTATATATGCTGATAAATTTTGGTGTAAAAATGCTGCTCAATTTGGTATGTATATGCT
1 ATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
14807129 GCCC
66 G-CC
14807133 ATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
1 ATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
14807198 GCC
66 GCC
* *
14807201 TATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTACATGC
1 -ATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGC
14807266 TGCC
65 TGCC
** * * * *
14807270 TATTTACTGTATACATACTGTTAAA-TTTGGTGTAAAAGTGATATTAAATTTGGTATGTATATGC
1 -ATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGC
14807334 TGCCC
65 TG-CC
14807339 ATTTGTTGTATATA
1 ATTTGTTGTATATA
14807353 AGAGCTGTCT
Statistics
Matches: 265, Mismatches: 21, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
68 51 0.19
69 213 0.80
70 1 0.00
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.44
Consensus pattern (68 bp):
ATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
GCC
Found at i:14807088 original size:45 final size:46
Alignment explanation
Indices: 14807020--14807228 Score: 167
Period size: 45 Copynumber: 4.6 Consensus size: 46
14807010 ACTGTTAAAT
* *
14807020 TTTGGTGTA-AAAGTGCTGTTAAATTTGGTATGTATATGCTGCTC-A
1 TTTGGTGTATATA-TGCTGTTAAATTTGGTATATATATGCTGCTCAA
* * * * *
14807065 TTTGTTGTATATATGCTGATAAATTTTGGTGTAAAAATGCTGCTCAA
1 TTTGGTGTATATATGCTGTTAAA-TTTGGTATATATATGCTGCTCAA
* * *** * * * *
14807112 TTTGGTATGTATATGCTG-CCCATTTGTTGTATATATGCTGTTAAA
1 TTTGGTGTATATATGCTGTTAAATTTGGTATATATATGCTGCTCAA
* * *
14807157 TTTTGGTGTA-AAAGTGCTGTTAAATTTGGTATGTATATGCTGC-CTA
1 -TTTGGTGTATATA-TGCTGTTAAATTTGGTATATATATGCTGCTCAA
*
14807203 TTTGCTGTATATATGCTGTTAAATTT
1 TTTGGTGTATATATGCTGTTAAATTT
14807229 TGGTGTAAAA
Statistics
Matches: 125, Mismatches: 32, Indels: 14
0.73 0.19 0.08
Matches are distributed among these distances:
45 58 0.46
46 35 0.28
47 32 0.26
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.45
Consensus pattern (46 bp):
TTTGGTGTATATATGCTGTTAAATTTGGTATATATATGCTGCTCAA
Found at i:14809178 original size:25 final size:25
Alignment explanation
Indices: 14809150--14809261 Score: 142
Period size: 25 Copynumber: 4.6 Consensus size: 25
14809140 CTTTAACGCT
*
14809150 CTCTCTGATTATTAGCACATCAGTG
1 CTCTCTGATTATTAGCACGTCAGTG
*
14809175 CTCTCTGATTATTAGCACGTTAGTG
1 CTCTCTGATTATTAGCACGTCAGTG
* *
14809200 CTCTCTGATTACTAGCACGTCTGTG
1 CTCTCTGATTATTAGCACGTCAGTG
*
14809225 CTCTCTG--TA-TAGCACTTCAGTG
1 CTCTCTGATTATTAGCACGTCAGTG
14809247 CTCTCTG-TTCATTAG
1 CTCTCTGATT-ATTAG
14809262 TGCATAACAA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
22 18 0.23
23 3 0.04
24 1 0.01
25 55 0.71
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.38
Consensus pattern (25 bp):
CTCTCTGATTATTAGCACGTCAGTG
Found at i:14818964 original size:326 final size:326
Alignment explanation
Indices: 14818371--14819028 Score: 1131
Period size: 326 Copynumber: 2.0 Consensus size: 326
14818361 ATGTAGTAGT
* *
14818371 CATACCCAATCATTTTAACAGCCCATTATTGTTGGAATGGGGTGATAGCTTGCCGATTCGCTAAG
1 CATACCCAATCATTTTAACAACCCATTATTGTTGGAATGGGGTGATAGCTTGCCGATTCACTAAG
* *
14818436 AAATTTAGGCTTTGGTGATCGGTCTTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
66 AAATTCAGGCTTTGGTGATCGGTCCTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
* *
14818501 CTTGACTGCTATGAGAATCGTGAACATTTCCTTATCGTAGATGAAAAGTGCCTCATGTTTCACTC
131 CTTGAATGCCATGAGAATCGTGAACATTTCCTTATCGTAGATGAAAAGTGCCTCATGTTTCACTC
*
14818566 CTAGCCCTTTGCTGAAAAATGCCACAGGTCTTCTTTTCTGGTGTAACACAACCCCGACCCCTTAA
196 CTAGCCCTTTGCTGAAAAATGCCACAGGTCTTCCTTTCTGGTGTAACACAACCCCGACCCCTTAA
*
14818631 CCACATGCATCAGTGTCGATGCAAAACTCTTCATTAAAATTGGGAAGACATAGTACCGGTGCTTG
261 CCACATGCATCAATGTCGATGCAAAACTCTTCATTAAAATTGGGAAGACATAGTACCGGTGCTTG
14818696 G
326 G
*
14818697 CATACCCAATCATTTTAACAACCTATTATTGTTGGAATGGGGTGATAGCTTGCCGATTCACTAAG
1 CATACCCAATCATTTTAACAACCCATTATTGTTGGAATGGGGTGATAGCTTGCCGATTCACTAAG
* *
14818762 AACTTCAGGCTTTGGTGATCGGTCCTGATTTGAAACCTCTTTCCAACCAAGTACGTGTGCCATTT
66 AAATTCAGGCTTTGGTGATCGGTCCTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
* *
14818827 CTTGAATGCCATGAGAA-CTGTGAACATTTCCTTATCGTAGATGTAAAGTGCCTTATGTTTCACT
131 CTTGAATGCCATGAGAATC-GTGAACATTTCCTTATCGTAGATGAAAAGTGCCTCATGTTTCACT
14818891 CCTAGCCCTTTGCTGAAAAATGCCAC-GGATCTTCCTTTCTGGTGTAACACAACCCCGACCCCTT
195 CCTAGCCCTTTGCTGAAAAATGCCACAGG-TCTTCCTTTCTGGTGTAACACAACCCCGACCCCTT
* * * *
14818955 GACCACATGCGTCAATGTCGATGTAAAACTCTTTATTAAAATTGGGAAGACATAGTACCGGTGCT
259 AACCACATGCATCAATGTCGATGCAAAACTCTTCATTAAAATTGGGAAGACATAGTACCGGTGCT
14819020 TGG
324 TGG
14819023 CATACC
1 CATACC
14819029 ACTTGCTTTA
Statistics
Matches: 313, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
325 3 0.01
326 310 0.99
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (326 bp):
CATACCCAATCATTTTAACAACCCATTATTGTTGGAATGGGGTGATAGCTTGCCGATTCACTAAG
AAATTCAGGCTTTGGTGATCGGTCCTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
CTTGAATGCCATGAGAATCGTGAACATTTCCTTATCGTAGATGAAAAGTGCCTCATGTTTCACTC
CTAGCCCTTTGCTGAAAAATGCCACAGGTCTTCCTTTCTGGTGTAACACAACCCCGACCCCTTAA
CCACATGCATCAATGTCGATGCAAAACTCTTCATTAAAATTGGGAAGACATAGTACCGGTGCTTG
G
Found at i:14819756 original size:84 final size:84
Alignment explanation
Indices: 14819615--14819880 Score: 435
Period size: 84 Copynumber: 3.2 Consensus size: 84
14819605 GGAGGAAAAG
14819615 AGAGCTTGTCCCAGGTCATCCAACAATT-TTTCTATGATAGGTATGGGGAACCTATCTGTAACAC
1 AGAGCTTGTCCCAGGTCATCCAACAATTCTTT-TATGATAGGTATGGGGAACCTATCTGTAACAC
*
14819679 CCCTATCTCGTATTCGTCAC
65 CCCTATCTCGTATTCATCAC
* * *
14819699 AGAGCTTGTCCCAGGTCATCCAACAATTCTTTTATAATAGGTATGGGGAATCTATCTGTAATACC
1 AGAGCTTGTCCCAGGTCATCCAACAATTCTTTTATGATAGGTATGGGGAACCTATCTGTAACACC
14819764 CCTATCTCGTATTCATCAC
66 CCTATCTCGTATTCATCAC
* * *
14819783 CGAGCTTGTCCCAGGTCATCCAACAATTCTTCTATGATAGGTATGGGGAACCTATCTGTAGCACC
1 AGAGCTTGTCCCAGGTCATCCAACAATTCTTTTATGATAGGTATGGGGAACCTATCTGTAACACC
*
14819848 CTTATCTCGTATTCATCAC
66 CCTATCTCGTATTCATCAC
*
14819867 CGAGCTTGTCCCAG
1 AGAGCTTGTCCCAG
14819881 AACATTACCG
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
84 167 0.98
85 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (84 bp):
AGAGCTTGTCCCAGGTCATCCAACAATTCTTTTATGATAGGTATGGGGAACCTATCTGTAACACC
CCTATCTCGTATTCATCAC
Found at i:14820630 original size:17 final size:17
Alignment explanation
Indices: 14820608--14820668 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
14820598 ATTGAATCAC
14820608 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
14820625 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
14820645 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
14820662 TACATAA
1 TACATAA
14820669 GTCTTGAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 20 0.61
20 13 0.39
ACGTcount: A:0.51, C:0.15, G:0.03, T:0.31
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:14820646 original size:37 final size:36
Alignment explanation
Indices: 14820599--14820694 Score: 149
Period size: 37 Copynumber: 2.6 Consensus size: 36
14820589 ATTACCTGAA
14820599 TTGAATCACTACATAATTAAAAACATTACATAAGTC
1 TTGAATCACTACATAATTAAAAACATTACATAAGTC
14820635 TTTGAATCACTACATAATTAAAAACATTACATAAGTC
1 -TTGAATCACTACATAATTAAAAACATTACATAAGTC
*
14820672 TTGAAATTAAC-ACATAATTAAAA
1 TTG-AA-TCACTACATAATTAAAA
14820695 TGTAAGTATT
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
36 3 0.05
37 50 0.89
38 3 0.05
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.31
Consensus pattern (36 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTC
Found at i:14820894 original size:33 final size:33
Alignment explanation
Indices: 14820816--14820897 Score: 94
Period size: 38 Copynumber: 2.3 Consensus size: 33
14820806 TAGACTTTAG
*
14820816 TTTTATTTTTATTGGGTTGGTAATTGGGTAGAC
1 TTTTAGTTTTATTGGGTTGGTAATTGGGTAGAC
14820849 TTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGTAGAC
1 -----TTTTAGTTTTATTGGGTT-GGTAATTGGGTAGAC
14820888 -TTTAGTTTTA
1 TTTTAGTTTTA
14820898 GTTTTAGTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
33 10 0.24
38 17 0.40
39 15 0.36
ACGTcount: A:0.18, C:0.02, G:0.27, T:0.52
Consensus pattern (33 bp):
TTTTAGTTTTATTGGGTTGGTAATTGGGTAGAC
Found at i:14820920 original size:45 final size:39
Alignment explanation
Indices: 14820806--14820903 Score: 180
Period size: 39 Copynumber: 2.5 Consensus size: 39
14820796 GACTTAGAGT
*
14820806 TAGACTTTAGTTTTATTTTTATTGGGTT-GGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
14820844 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
14820883 TAGACTTTAGTTTTAGTTTTA
1 TAGACTTTAGTTTTAGTTTTA
14820904 GTTTTATTGG
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
38 27 0.47
39 31 0.53
ACGTcount: A:0.19, C:0.03, G:0.26, T:0.52
Consensus pattern (39 bp):
TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
Found at i:14820947 original size:17 final size:17
Alignment explanation
Indices: 14820925--14820959 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
14820915 TTGGGTTGGA
14820925 TAATTTTATTTATTAAT
1 TAATTTTATTTATTAAT
14820942 TAATTTTATTTATTAAT
1 TAATTTTATTTATTAAT
14820959 T
1 T
14820960 TTTTCGGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TAATTTTATTTATTAAT
Found at i:14825131 original size:51 final size:51
Alignment explanation
Indices: 14825063--14825164 Score: 168
Period size: 51 Copynumber: 2.0 Consensus size: 51
14825053 ATCACATTTA
14825063 TCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTATCACTTG
* * * *
14825114 TCACTTGTGACTGATCAGATAAGTGTAGCTGAAGCTACTACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTATCACTTG
14825165 CTACTGATCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (51 bp):
TCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTATCACTTG
Found at i:14826755 original size:17 final size:17
Alignment explanation
Indices: 14826735--14826773 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
14826725 GCCATTTTTG
14826735 CATTTAAGCTATTTAAT
1 CATTTAAGCTATTTAAT
14826752 CATTTAAGCTATTTAAT
1 CATTTAAGCTATTTAAT
14826769 CATTT
1 CATTT
14826774 CCCATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.33, C:0.13, G:0.05, T:0.49
Consensus pattern (17 bp):
CATTTAAGCTATTTAAT
Found at i:14828613 original size:103 final size:103
Alignment explanation
Indices: 14828435--14828662 Score: 325
Period size: 103 Copynumber: 2.2 Consensus size: 103
14828425 AACCGTTGTT
* * *
14828435 GGTGGATTCCGCACTTAGC-ACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGAGGG
1 GGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCGAGGG
* * * *
14828499 AATCAGTACTTAGCAACCCCC-TTCACATTTCAGATGC
66 AATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
** ** *
14828536 GGTGGAATCAGCACTTAGCAACCACCAAATGGGTCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 GGTGGAATCAGCACTTAGCAACCACC-AATGAATCGGGGAATCAGCACACAGCAACCCCTCGAGG
14828601 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
65 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
14828640 GGTGGAATCAGCACTTAGCAACC
1 GGTGGAATCAGCACTTAGCAACC
14828663 CCCTTCCACA
Statistics
Matches: 112, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
101 17 0.15
102 6 0.05
103 53 0.47
104 36 0.32
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.19
Consensus pattern (103 bp):
GGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCGAGGG
AATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
Found at i:14828661 original size:43 final size:43
Alignment explanation
Indices: 14828600--14828705 Score: 203
Period size: 43 Copynumber: 2.5 Consensus size: 43
14828590 ACCCCTCGGG
*
14828600 GGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGT
14828643 GGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGT
14828686 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
14828706 ACCAATGAAT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (43 bp):
GGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGT
Found at i:14830289 original size:21 final size:21
Alignment explanation
Indices: 14830229--14830290 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
14830219 GAGTTCTTGT
* * *
14830229 TGCATCACCCCCATATCATTC
1 TGCATGACTCCCATATCTTTC
*
14830250 TGCATGACTCCCATGTCTTTC
1 TGCATGACTCCCATATCTTTC
14830271 TGCATGACTCCCATATCTTT
1 TGCATGACTCCCATATCTTT
14830291 TTGTAATCTC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.19, C:0.35, G:0.10, T:0.35
Consensus pattern (21 bp):
TGCATGACTCCCATATCTTTC
Found at i:14832558 original size:21 final size:20
Alignment explanation
Indices: 14832515--14832568 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
14832505 TTTAGCTTTC
*
14832515 ATGAGCTTCAGTTAACTCAT
1 ATGAGCTTCAGTTAACCCAT
*
14832535 ATGAGCTTCAGATTAACCCTT
1 ATGAGCTTCAG-TTAACCCAT
* *
14832556 ATGGGTTTCAGTT
1 ATGAGCTTCAGTT
14832569 CAGCTCTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (20 bp):
ATGAGCTTCAGTTAACCCAT
Found at i:14832566 original size:41 final size:42
Alignment explanation
Indices: 14832521--14832610 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
14832511 TTTCATGAGC
* * *
14832521 TTCAGTT-AACTCATATGAGCTTCAGA-TTAACCCTTATGGGT
1 TTCAGTTCAACTCATATAAGCTTCA-ATTTAACCCTAATGGCT
* * *
14832562 TTCAGTTCAGCTCTTTTAAGCTTCAATTTAACCCTAATGGCT
1 TTCAGTTCAACTCATATAAGCTTCAATTTAACCCTAATGGCT
14832604 TTCAGTT
1 TTCAGTT
14832611 TAGCTCTTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
41 8 0.20
42 33 0.80
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.40
Consensus pattern (42 bp):
TTCAGTTCAACTCATATAAGCTTCAATTTAACCCTAATGGCT
Found at i:14832586 original size:42 final size:42
Alignment explanation
Indices: 14832538--14832618 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
14832528 AACTCATATG
* *
14832538 AGCTTCAGA-TTAACCCTTATGGGTTTCAGTTCAGCTCTTTTA
1 AGCTTCA-ATTTAACCCTAATGGCTTTCAGTTCAGCTCTTTTA
*
14832580 AGCTTCAATTTAACCCTAATGGCTTTCAGTTTAGCTCTT
1 AGCTTCAATTTAACCCTAATGGCTTTCAGTTCAGCTCTT
14832619 CTGTATAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 1 0.03
42 34 0.97
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (42 bp):
AGCTTCAATTTAACCCTAATGGCTTTCAGTTCAGCTCTTTTA
Found at i:14832708 original size:20 final size:18
Alignment explanation
Indices: 14832671--14832709 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
14832661 AGTGTCCTTG
*
14832671 ATAAAGTAAAATAAGGAA
1 ATAAAGTAAAAAAAGGAA
14832689 ATAAAGTGACAAAAAAGGAA
1 ATAAAGT-A-AAAAAAGGAA
14832709 A
1 A
14832710 ATTTTGAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 1 0.06
20 10 0.56
ACGTcount: A:0.67, C:0.03, G:0.18, T:0.13
Consensus pattern (18 bp):
ATAAAGTAAAAAAAGGAA
Found at i:14833129 original size:11 final size:11
Alignment explanation
Indices: 14833115--14833160 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
14833105 AGATAAATAT
14833115 TATTTTATTAA
1 TATTTTATTAA
*
14833126 TATTTTAATGAGA
1 TATTTT-ATTA-A
*
14833139 TATTTTATTAT
1 TATTTTATTAA
14833150 TATTTTATTAA
1 TATTTTATTAA
14833161 GTATAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:14837346 original size:42 final size:42
Alignment explanation
Indices: 14837294--14837443 Score: 158
Period size: 42 Copynumber: 3.6 Consensus size: 42
14837284 ATGAGTTTTC
* *
14837294 GTTTCACCCTAATGGGTTTCTGTTCAACTCTTTTGAGCTTCA
1 GTTTAACCCTAATGGGTTTCTGTTCAGCTCTTTTGAGCTTCA
**
14837336 GTTTAACCCTAATGGGTTTCCATTCAGCTCTTTTGAGCTTCA
1 GTTTAACCCTAATGGGTTTCTGTTCAGCTCTTTTGAGCTTCA
* ** * ** *
14837378 ATTTAACTTTTATGGGTTT-TCGTTCAGCTCTTACGAGCTTCC
1 GTTTAACCCTAATGGGTTTCT-GTTCAGCTCTTTTGAGCTTCA
* * *
14837420 GTTCAACCCTTATAGGTTTCTGTT
1 GTTTAACCCTAATGGGTTTCTGTT
14837444 TAGCACTTAT
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
42 87 0.99
43 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (42 bp):
GTTTAACCCTAATGGGTTTCTGTTCAGCTCTTTTGAGCTTCA
Found at i:14838261 original size:12 final size:12
Alignment explanation
Indices: 14838244--14838278 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
14838234 TGTGCATTCG
14838244 GTTAACCGACCA
1 GTTAACCGACCA
*
14838256 GTTAACCGACCG
1 GTTAACCGACCA
14838268 GTTAACCGACC
1 GTTAACCGACC
14838279 CGAAATAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.29, C:0.34, G:0.20, T:0.17
Consensus pattern (12 bp):
GTTAACCGACCA
Found at i:14838506 original size:17 final size:17
Alignment explanation
Indices: 14838484--14838546 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
14838474 ATTAAATCAC
14838484 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
14838501 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
14838521 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
14838538 TACATAATT
1 TACATAATT
14838547 CTTGAAATTA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 21 0.62
20 13 0.38
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.35
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:14838524 original size:37 final size:37
Alignment explanation
Indices: 14838478--14838549 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
14838468 ACCAGAATTA
14838478 AATCACTACATAATTAAAAACATTACATAAGTCTTTG
1 AATCACTACATAATTAAAAACATTACATAAGTCTTTG
* *
14838515 AATCACTACATAATTAAAAATATTACATAATTCTT
1 AATCACTACATAATTAAAAACATTACATAAGTCTT
14838550 GAAATTAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (37 bp):
AATCACTACATAATTAAAAACATTACATAAGTCTTTG
Found at i:14838723 original size:38 final size:39
Alignment explanation
Indices: 14838679--14838775 Score: 160
Period size: 39 Copynumber: 2.5 Consensus size: 39
14838669 ACTTAGAATT
* *
14838679 AGACTTTAGTTTTATTTTTATTGGGTTG-GTAATTGGGC
1 AGACTTTAGTTTTAGTTTTATTGGGTTGAGTAATTGGAC
*
14838717 AGACTTTAGTTTTAGTTTTATTGGGTTGAGTAATTGGAT
1 AGACTTTAGTTTTAGTTTTATTGGGTTGAGTAATTGGAC
14838756 AGACTTTAGTTTTAGTTTTA
1 AGACTTTAGTTTTAGTTTTA
14838776 GTTTTATTGG
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 27 0.49
39 28 0.51
ACGTcount: A:0.22, C:0.04, G:0.24, T:0.51
Consensus pattern (39 bp):
AGACTTTAGTTTTAGTTTTATTGGGTTGAGTAATTGGAC
Found at i:14839862 original size:21 final size:21
Alignment explanation
Indices: 14839836--14839890 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
14839826 CAGATTAACC
* *
14839836 CTTATGGGTTTCCATTCATCT
1 CTTATGAGTTTCCATTCAACT
*
14839857 CTTATGAGTTTCCGTTCAACT
1 CTTATGAGTTTCCATTCAACT
*
14839878 CTTACGAGTTTCC
1 CTTATGAGTTTCC
14839891 GTTTAGCACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.16, C:0.25, G:0.15, T:0.44
Consensus pattern (21 bp):
CTTATGAGTTTCCATTCAACT
Found at i:14839891 original size:21 final size:21
Alignment explanation
Indices: 14839843--14839893 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
14839833 ACCCTTATGG
* * *
14839843 GTTTCCATTCATCTCTTATGA
1 GTTTCCGTTCAACTCTTACGA
14839864 GTTTCCGTTCAACTCTTACGA
1 GTTTCCGTTCAACTCTTACGA
14839885 GTTTCCGTT
1 GTTTCCGTT
14839894 TAGCACTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.16, C:0.25, G:0.14, T:0.45
Consensus pattern (21 bp):
GTTTCCGTTCAACTCTTACGA
Found at i:14839902 original size:21 final size:21
Alignment explanation
Indices: 14839843--14839902 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 21
14839833 ACCCTTATGG
* * * *
14839843 GTTTCCATTCATCTCTTATGA
1 GTTTCCGTTCAACACTTACGA
*
14839864 GTTTCCGTTCAACTCTTACGA
1 GTTTCCGTTCAACACTTACGA
* *
14839885 GTTTCCGTTTAGCACTTA
1 GTTTCCGTTCAACACTTA
14839903 TGTGCTTCTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.18, C:0.25, G:0.13, T:0.43
Consensus pattern (21 bp):
GTTTCCGTTCAACACTTACGA
Found at i:14844209 original size:30 final size:29
Alignment explanation
Indices: 14844175--14844238 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
14844165 ATTTTCAAGC
**
14844175 AAATTTATAAATCTATAAAGTT-GAGAGATT
1 AAATTTATAAAAATA-AAAGTTGGA-AGATT
*
14844205 AAATTTTTAAAAATAAAAGTTGGAAGATT
1 AAATTTATAAAAATAAAAGTTGGAAGATT
14844234 AAATT
1 AAATT
14844239 CTAAATGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 16 0.53
30 14 0.47
ACGTcount: A:0.50, C:0.02, G:0.12, T:0.36
Consensus pattern (29 bp):
AAATTTATAAAAATAAAAGTTGGAAGATT
Found at i:14856107 original size:176 final size:175
Alignment explanation
Indices: 14855812--14856164 Score: 487
Period size: 176 Copynumber: 2.0 Consensus size: 175
14855802 ATCTTCCCCC
* * * *
14855812 TACCATCTCCCCTCTTCTCTCCCTCGTCTCTGCAAATCAATTTTTTTTTCTTCTCATCTCAGTTC
1 TACCATCGCCCCTCTTCTCTCCCTCGTATCTACAAATCAATTTTTTTCTCTTCTCATCTCAGTTC
* * * *
14855877 TCGCCCACCGCCGTGTCCGCTGATTTTTTTCCTGATCTGACCCGTATTCCGTGTCGGATCGTGTT
66 TCGCCCACCGCC--GTCCGCTGAGTTTTTTCCGGATCTGACCCGTATCCCGTGTCGGATCGTGTC
* *
14855942 GACACAGGTACTGCACCCCAAATTG-CCGAGTCAGGGTAACGAAGCT
129 GACACAAGTACTGCACCCCAAATTGCCCGAGCCAGGGTAACGAAGCT
** *
14855988 TACCATCGCCCCTCTTCTCTTTCTCGTATCTACAAATCAGGTTTCTTCATTCTCTTCTCATCTCA
1 TACCATCGCCCCTCTTCTCTCCCTCGTATCTACAAATCA-ATTT-TT--TTCTCTTCTCATCTCA
14856053 GTTCTCGCCCACCGCC-TCCGCTG-GTTTTTTCCGGATCTGACCCGTATCCCGTGTCGGATCGTG
62 GTTCTCGCCCACCGCCGTCCGCTGAGTTTTTTCCGGATCTGACCCGTATCCCGTGTCGGATCGTG
* *
14856116 TCGACACAAGTACTGCATCCCAAATTGCTCCGAGCCCGGGTAACGAAGC
127 TCGACACAAGTACTGCACCCCAAATTGC-CCGAGCCAGGGTAACGAAGC
14856165 CTATAATTAT
Statistics
Matches: 156, Mismatches: 15, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
176 95 0.61
177 10 0.06
178 20 0.13
180 31 0.20
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.32
Consensus pattern (175 bp):
TACCATCGCCCCTCTTCTCTCCCTCGTATCTACAAATCAATTTTTTTCTCTTCTCATCTCAGTTC
TCGCCCACCGCCGTCCGCTGAGTTTTTTCCGGATCTGACCCGTATCCCGTGTCGGATCGTGTCGA
CACAAGTACTGCACCCCAAATTGCCCGAGCCAGGGTAACGAAGCT
Found at i:14856180 original size:12 final size:12
Alignment explanation
Indices: 14856163--14856187 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14856153 GGGTAACGAA
14856163 GCCTATAATTAT
1 GCCTATAATTAT
14856175 GCCTATAATTAT
1 GCCTATAATTAT
14856187 G
1 G
14856188 TTTCTCATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (12 bp):
GCCTATAATTAT
Found at i:14861149 original size:29 final size:29
Alignment explanation
Indices: 14861117--14861179 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
14861107 TTTTTTTATT
14861117 TTTTATTT-ATTTTTTAAATTTTAAAATAC
1 TTTTATTTAATTTTTT-AATTTTAAAATAC
*
14861146 TTTT-TTTAAATTTTTTAATTTTAAAATAT
1 TTTTATTT-AATTTTTTAATTTTAAAATAC
14861175 TTTTA
1 TTTTA
14861180 AAATACTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
28 3 0.10
29 20 0.67
30 7 0.23
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (29 bp):
TTTTATTTAATTTTTTAATTTTAAAATAC
Found at i:14861151 original size:38 final size:39
Alignment explanation
Indices: 14861108--14861254 Score: 156
Period size: 38 Copynumber: 3.7 Consensus size: 39
14861098 TACAATAATT
* **
14861108 TTTTTTATTTTTTATTTATTTTTTAA-A-TTTTAAAATAC
1 TTTTTTATTTTTT-TTAATTTTAAAATATTTTTAAAATAC
**
14861146 TTTTTTTAAATTTTTTAATTTTAAAATATTTTTAAAATAC
1 -TTTTTTATTTTTTTTAATTTTAAAATATTTTTAAAATAC
* *
14861186 -TTTTAATTTTTTTTAATTTTAAAATATTTTTAAAATAAA
1 TTTTTTATTTTTTTTAATTTTAAAATATTTTTAAAAT-AC
14861225 TTTTTTATTTTTGTTTTAATTTTTAAAATA
1 TTTTTTA-TTTT-TTTTAA-TTTTAAAATA
14861255 AATTTTTTGG
Statistics
Matches: 91, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
38 42 0.46
39 13 0.14
40 16 0.18
41 4 0.04
42 6 0.07
43 10 0.11
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (39 bp):
TTTTTTATTTTTTTTAATTTTAAAATATTTTTAAAATAC
Found at i:14861189 original size:29 final size:28
Alignment explanation
Indices: 14861125--14861195 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 28
14861115 TTTTTTATTT
*
14861125 ATTTTTTAAATTTTAAAATACTTTTTTTAA
1 ATTTTTT-AATTTTAAAATAC-TTTTTAAA
14861155 ATTTTTTAATTTTAAAATA-TTTTTAAA
1 ATTTTTTAATTTTAAAATACTTTTTAAA
*
14861182 ATACTTTTAATTTT
1 AT-TTTTTAATTTT
14861196 TTTTAATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
27 9 0.24
28 10 0.26
29 12 0.32
30 7 0.18
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (28 bp):
ATTTTTTAATTTTAAAATACTTTTTAAA
Found at i:14861229 original size:32 final size:33
Alignment explanation
Indices: 14861193--14861262 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 33
14861183 TACTTTTAAT
14861193 TTTTTTTAATTTTAAAAT-ATTTTTAAAATAAA
1 TTTTTTTAATTTTAAAATAATTTTTAAAATAAA
* ****
14861225 -TTTTTTATTTTTGTTTTAATTTTTAAAATAAA
1 TTTTTTTAATTTTAAAATAATTTTTAAAATAAA
14861257 TTTTTT
1 TTTTTT
14861263 GGTATTTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
31 12 0.39
32 14 0.45
33 5 0.16
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (33 bp):
TTTTTTTAATTTTAAAATAATTTTTAAAATAAA
Found at i:14869676 original size:32 final size:32
Alignment explanation
Indices: 14869640--14869703 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
14869630 GAAGTTCAAC
*
14869640 GTGTCAAGTGTGGCTAAGGAGGACGAAGCTGG
1 GTGTCAAGTGTAGCTAAGGAGGACGAAGCTGG
14869672 GTGTCAAGTGTAGCTAAGGAGGACGAAGCTGG
1 GTGTCAAGTGTAGCTAAGGAGGACGAAGCTGG
14869704 ATGCGGTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.27, C:0.12, G:0.42, T:0.19
Consensus pattern (32 bp):
GTGTCAAGTGTAGCTAAGGAGGACGAAGCTGG
Found at i:14878469 original size:9 final size:9
Alignment explanation
Indices: 14878452--14878488 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
14878442 TGAGTTTTCG
14878452 AATTCGAAT
1 AATTCGAAT
*
14878461 AACTCGAAT
1 AATTCGAAT
14878470 AATTCGAAT
1 AATTCGAAT
14878479 AATTCGAAT
1 AATTCGAAT
14878488 A
1 A
14878489 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14878736 original size:30 final size:31
Alignment explanation
Indices: 14878702--14878762 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
14878692 AAACCTTTTA
*
14878702 TTTTCCCAC-AAAATTTTTACTCTC-TCCCAC
1 TTTTCCC-CTAAAACTTTTACTCTCTTCCCAC
*
14878732 TTTTCCCCTAAAACTTTTATTCTCTTCCCAC
1 TTTTCCCCTAAAACTTTTACTCTCTTCCCAC
14878763 CCCACCTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 1 0.04
30 20 0.74
31 6 0.22
ACGTcount: A:0.21, C:0.36, G:0.00, T:0.43
Consensus pattern (31 bp):
TTTTCCCCTAAAACTTTTACTCTCTTCCCAC
Found at i:14891228 original size:18 final size:18
Alignment explanation
Indices: 14891201--14891236 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14891191 AATTCTAATA
*
14891201 CCTTTTCCTTTTACAAAC
1 CCTTTACCTTTTACAAAC
14891219 CCTTTACCTTTTACAAAC
1 CCTTTACCTTTTACAAAC
14891237 TCGTATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.33, G:0.00, T:0.42
Consensus pattern (18 bp):
CCTTTACCTTTTACAAAC
Found at i:14906835 original size:48 final size:47
Alignment explanation
Indices: 14906776--14906867 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 47
14906766 AAAAGGGTGG
* * *
14906776 GACCAAGGTGAAAGCCTACAAAGGGCGCTTTGAGTCAAAAAAAAAAGA
1 GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGT-AAAAAAAAAAGA
*
14906824 GACCAGGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAA
1 GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAA
14906868 TGGAGAGGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 9 0.22
48 31 0.77
ACGTcount: A:0.46, C:0.17, G:0.25, T:0.12
Consensus pattern (47 bp):
GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAAAGA
Found at i:14908272 original size:48 final size:48
Alignment explanation
Indices: 14908220--14908453 Score: 200
Period size: 48 Copynumber: 5.1 Consensus size: 48
14908210 CGCCTTTCCA
14908220 TACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
1 TACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
* * * * * * * ***
14908268 TACTGG-CGTGAAGTAGATC-AA--ATATA-CAGATCTCGCCTTCCCA
1 TACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
*
14908311 TACTGGTGGCGAAACAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
1 TACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
* * * * * * * ***
14908359 TACTGG-CGTGAAGTAGATC-AA--AGATA-CAGATCTCGCCTTCCCA
1 TACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
*
14908402 TACTAGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
1 TACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
14908450 TACT
1 TACT
14908454 AGCGTGAAGT
Statistics
Matches: 133, Mismatches: 43, Indels: 20
0.68 0.22 0.10
Matches are distributed among these distances:
43 35 0.26
44 25 0.19
45 4 0.03
46 4 0.03
47 25 0.19
48 40 0.30
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (48 bp):
TACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
Found at i:14908652 original size:89 final size:90
Alignment explanation
Indices: 14908186--14908828 Score: 727
Period size: 91 Copynumber: 7.2 Consensus size: 90
14908176 TATTGGTAGC
*
14908186 GAAGTAGATCAAA-TATACAGATCTCGCCTTTCCATACTGGTGGCGAAGCAGATCGAAGGAAAAA
1 GAAGTAGATCAAAGTA-ACAGATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAA-GAAAAA
14908250 GCAGATCTTGTCTTCATGTACTGGCGT
64 GCAGATCTTGTCTTCATGTACTGGCGT
*
14908277 GAAGTAGATCAAA-TATACAGATCTCGCCTTCCCATACTGGTGGCGAAACAGATCGAAGGAAAAA
1 GAAGTAGATCAAAGTA-ACAGATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAA-GAAAAA
14908341 GCAGATCTTGTCTTCATGTACTGGCGT
64 GCAGATCTTGTCTTCATGTACTGGCGT
*
14908368 GAAGTAGATCAAAG-ATACAGATCTCGCCTTCCCATACTAGTGGCGAAGCAGATCGAAGGAAAAA
1 GAAGTAGATCAAAGTA-ACAGATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAA-GAAAAA
*
14908432 GCAGATCTTGTCTTCATGTACTAGCGT
64 GCAGATCTTGTCTTCATGTACTGGCGT
* * *
14908459 GAAGTAGATCAAAGATAACAGATCTCGCTTTCCCATACTGGTGGCGAAGCAGATCGAA-AGAAAT
1 GAAGTAGATCAAAG-TAACAGATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAAAG
* * * *
14908523 TAGATATGGTCTTCATGTA-TCAGCGT
65 CAGATCTTGTCTTCATGTACT-GGCGT
* * * * * *
14908549 GAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATC-AA-AAAAAG
1 GAAGTAGATCAAAGT-AACAGATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAAAG
* *
14908612 TAGATCTTGCCTTCATGTA-TCGGCGT
65 CAGATCTTGTCTTCATGTACT-GGCGT
* * * * * * *
14908638 GAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATC-AA-AGAAAG
1 GAAGTAGATCAAAGT-AACAGATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAAAG
*
14908701 CAGATCTTGCCTTCATGTA-TCGGCGT
65 CAGATCTTGTCTTCATGTACT-GGCGT
* * * * * * * * *
14908727 GAAGTAGATCAAAGGAACATATCTTGTCTCCCCATACTGGTGGTGGAGTAGGTCGAAG-AAAA-C
1 GAAGTAGATCAAAGTAACAGATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAAAGC
* * **
14908790 AGATCGTGTCTTCATGTGCTGGTAT
66 AGATCTTGTCTTCATGTACTGGCGT
14908815 GAAGTAGATCAAAG
1 GAAGTAGATCAAAG
14908829 ATAGTAGGTC
Statistics
Matches: 508, Mismatches: 36, Indels: 19
0.90 0.06 0.03
Matches are distributed among these distances:
88 70 0.14
89 137 0.27
90 71 0.14
91 190 0.37
92 39 0.08
93 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (90 bp):
GAAGTAGATCAAAGTAACAGATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAAAGC
AGATCTTGTCTTCATGTACTGGCGT
Found at i:14908661 original size:44 final size:45
Alignment explanation
Indices: 14908247--14908740 Score: 175
Period size: 44 Copynumber: 11.0 Consensus size: 45
14908237 ATCGAAGGAA
*
14908247 AAAGCAGATCTTGTCTTCATGTA-CTGGCGTGAAGTAGATCAAA-T
1 AAAGCAGATCTTGCCTTCATGTATC-GGCGTGAAGTAGATCAAAGT
* * *** * * ** * *
14908291 ATA-CAGATCTCGCCTTCCCATA-CTGGTGGCGAAACAGATCGAAGGAA
1 AAAGCAGATCTTGCCTTCATGTATC-GG-CGTGAAGTAGATC-AAAG-T
*
14908338 AAAGCAGATCTTGTCTTCATGTA-CTGGCGTGAAGTAGATCAAAG-
1 AAAGCAGATCTTGCCTTCATGTATC-GGCGTGAAGTAGATCAAAGT
* * * * * *
14908382 ATA-CAGATCTCGCCTTCCCATACTAGT-GGC--GAAGCAGATCGAAGGAA
1 AAAGCAGATCTTGCCTT--CAT-GTA-TCGGCGTGAAGTAGATC-AAAG-T
* *
14908429 AAAGCAGATCTTGTCTTCATGTA-CTAGCGTGAAGTAGATCAAAG-
1 AAAGCAGATCTTGCCTTCATGTATC-GGCGTGAAGTAGATCAAAGT
* * *** * * *
14908473 ATAA-CAGATCTCGCTTTCCCATA-CTGGTGGCGAAGCAGATCGAAAG-
1 A-AAGCAGATCTTGCCTTCATGTATC-GG-CGTGAAGTAGATC-AAAGT
** * * * *
14908519 AAATTAGATATGGTCTTCATGTATCAGCGTGAAGTAGATCAAAGT
1 AAAGCAGATCTTGCCTTCATGTATCGGCGTGAAGTAGATCAAAGT
* * * *** * * *
14908564 CAA-CAGATCTTGTCTCCCCATA-CTGGTGGTGGAGTAGATCAAA-A
1 AAAGCAGATCTTGCCTTCATGTATC-GG-CGTGAAGTAGATCAAAGT
*
14908608 AAAGTAGATCTTGCCTTCATGTATCGGCGTGAAGTAGATCAAAGT
1 AAAGCAGATCTTGCCTTCATGTATCGGCGTGAAGTAGATCAAAGT
* * * *** * *
14908653 CAA-CAGATCTTGTCTCCCCATA-CTGGTGGTGGAGTAGATCAAAG-
1 AAAGCAGATCTTGCCTTCATGTATC-GG-CGTGAAGTAGATCAAAGT
14908697 AAAGCAGATCTTGCCTTCATGTATCGGCGTGAAGTAGATCAAAG
1 AAAGCAGATCTTGCCTTCATGTATCGGCGTGAAGTAGATCAAAG
14908741 GAACATATCT
Statistics
Matches: 320, Mismatches: 97, Indels: 66
0.66 0.20 0.14
Matches are distributed among these distances:
43 31 0.10
44 104 0.32
45 100 0.31
46 33 0.10
47 23 0.07
48 29 0.09
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (45 bp):
AAAGCAGATCTTGCCTTCATGTATCGGCGTGAAGTAGATCAAAGT
Found at i:14908777 original size:44 final size:44
Alignment explanation
Indices: 14908551--14908800 Score: 202
Period size: 45 Copynumber: 5.6 Consensus size: 44
14908541 ATCAGCGTGA
*
14908551 AGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGG
1 AGTAGATCAAAG-AAACAGATCTTGTCTCCCCATACTGGTGGTGG
* * * * *** * *
14908596 AGTAGATCAAAAAAAGTAGATCTTGCCTTCATGTA-TCGG-CGTGA
1 AGTAGATCAAAGAAA-CAGATCTTGTCTCCCCATACT-GGTGGTGG
*
14908640 AGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGG
1 AGTAGATCAAAG-AAACAGATCTTGTCTCCCCATACTGGTGGTGG
* * *** * *
14908685 AGTAGATCAAAGAAAGCAGATCTTGCCTTCATGTA-TCGG-CGTGA
1 AGTAGATCAAAGAAA-CAGATCTTGTCTCCCCATACT-GGTGGTGG
* *
14908729 AGTAGATCAAAGGAACATATCTTGTCTCCCCATACTGGTGGTGG
1 AGTAGATCAAAGAAACAGATCTTGTCTCCCCATACTGGTGGTGG
* * *
14908773 AGTAGGTCGAAGAAAACAGATCGTGTCT
1 AGTAGATCAAAG-AAACAGATCTTGTCT
14908801 TCATGTGCTG
Statistics
Matches: 153, Mismatches: 42, Indels: 20
0.71 0.20 0.09
Matches are distributed among these distances:
43 15 0.10
44 66 0.43
45 72 0.47
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (44 bp):
AGTAGATCAAAGAAACAGATCTTGTCTCCCCATACTGGTGGTGG
Found at i:14909105 original size:44 final size:45
Alignment explanation
Indices: 14909049--14909136 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 45
14909039 ATCGATTGAA
* *
14909049 AAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCTTCATATACTGGTCGTGAAGTAGATCGAAG
* * *
14909093 AAAGTAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGATCGAA
1 AAAGCAGATCTTGTCTTCATATACTGGTCGTGAAGTAGATCGAA
14909137 TATACAAGTC
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
44 23 0.61
45 15 0.39
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (45 bp):
AAAGCAGATCTTGTCTTCATATACTGGTCGTGAAGTAGATCGAAG
Found at i:14921511 original size:105 final size:105
Alignment explanation
Indices: 14921317--14921513 Score: 288
Period size: 105 Copynumber: 1.9 Consensus size: 105
14921307 AATGTTTAAA
* * **
14921317 TGTAAGACCATAGCTGGGCTATGGCATTTTAATGAAAAGACCATAACTGAGTTATGGCACCTTGA
1 TGTAAAACCATAGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGAGTTATGGCACCTACA
**
14921382 AAGTAAGACCATGGTTGGACCATGGCAGTATAGATACATG
66 AAGTAAGACCATGGCAGGACCATGGCAGTATAGATACATG
* *
14921422 TGTAAAACCATAGCTGGGCTATGGCATTCTGATGATAAGACCATAACTGAGTTATGGCA-CTACA
1 TGTAAAACCATAGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGAGTTATGGCACCTACA
**
14921486 AATGTAAGACCATGGCAGGGTCATGGCA
66 AA-GTAAGACCATGGCAGGACCATGGCA
14921514 ATGCATGTGT
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
104 5 0.06
105 76 0.94
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (105 bp):
TGTAAAACCATAGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGAGTTATGGCACCTACA
AAGTAAGACCATGGCAGGACCATGGCAGTATAGATACATG
Found at i:14922030 original size:18 final size:18
Alignment explanation
Indices: 14922009--14922069 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
14921999 TAAAATTTGA
14922009 TAAATCAATGAAATGAGT
1 TAAATCAATGAAATGAGT
* ** *
14922027 TAAAT-AGGTATAAAATTTGA
1 TAAATCA---ATGAAATGAGT
14922047 TAAATCAATGAAATGAGT
1 TAAATCAATGAAATGAGT
14922065 TAAAT
1 TAAAT
14922070 AGGTAGGTAT
Statistics
Matches: 31, Mismatches: 8, Indels: 8
0.66 0.17 0.17
Matches are distributed among these distances:
17 1 0.03
18 17 0.55
20 12 0.39
21 1 0.03
ACGTcount: A:0.51, C:0.03, G:0.15, T:0.31
Consensus pattern (18 bp):
TAAATCAATGAAATGAGT
Found at i:14922041 original size:38 final size:38
Alignment explanation
Indices: 14921999--14922074 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
14921989 TAATTAGTAG
14921999 TAAAATTTGATAAATCAATGAAATGAGTTAAATAGGTA
1 TAAAATTTGATAAATCAATGAAATGAGTTAAATAGGTA
14922037 TAAAATTTGATAAATCAATGAAATGAGTTAAATAGGTA
1 TAAAATTTGATAAATCAATGAAATGAGTTAAATAGGTA
14922075 GGTATAAGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.50, C:0.03, G:0.16, T:0.32
Consensus pattern (38 bp):
TAAAATTTGATAAATCAATGAAATGAGTTAAATAGGTA
Found at i:14923321 original size:22 final size:22
Alignment explanation
Indices: 14923296--14923339 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14923286 TTGTTTTACC
*
14923296 TATGCATAAAATAAAATAAATA
1 TATGCATAAAATAAAAAAAATA
* *
14923318 TATGTATAAATTAAAAAAAATA
1 TATGCATAAAATAAAAAAAATA
14923340 GATGAGGTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (22 bp):
TATGCATAAAATAAAAAAAATA
Found at i:14930276 original size:17 final size:17
Alignment explanation
Indices: 14930254--14930288 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14930244 AATAATAGAA
14930254 TAGGCACAATTAAATAT
1 TAGGCACAATTAAATAT
*
14930271 TAGGCACAATTGAATAT
1 TAGGCACAATTAAATAT
14930288 T
1 T
14930289 TAAAATTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.31
Consensus pattern (17 bp):
TAGGCACAATTAAATAT
Found at i:14931548 original size:3 final size:3
Alignment explanation
Indices: 14931529--14931615 Score: 79
Period size: 3 Copynumber: 28.3 Consensus size: 3
14931519 TTTAGCAACT
* *
14931529 TTA TTAA TTA GTTA TTA TTA TTA TTA TTA TCT- TTA TTG TTC TTA TTA
1 TTA TT-A TTA -TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
* * *
14931576 TTA TTA -TA TTCA TTA ATA TTA TTG TTA TTA TTA TTT TTA T
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14931616 ATTCACTTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
2 3 0.04
3 56 0.81
4 10 0.14
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:14933149 original size:40 final size:40
Alignment explanation
Indices: 14933090--14933191 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
14933080 AACACACTAG
* * * ***
14933090 TTTGGCACCTAGTGCCTCATCGGATAATTTGAAGTAATAA
1 TTTGACACCCAGTGTCTCATCGGATAAACCGAAGTAATAA
* *
14933130 TTTGACATCCAGTGTCTCATCGGCTAAACCGAAGTAATAA
1 TTTGACACCCAGTGTCTCATCGGATAAACCGAAGTAATAA
14933170 TTTGACACCCAGTGTCTCATCG
1 TTTGACACCCAGTGTCTCATCG
14933192 ACTCGAAGTC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (40 bp):
TTTGACACCCAGTGTCTCATCGGATAAACCGAAGTAATAA
Found at i:14936738 original size:4 final size:4
Alignment explanation
Indices: 14936729--14936770 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
14936719 GTATAAAATG
14936729 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
14936771 ATATATTCCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:14937045 original size:38 final size:38
Alignment explanation
Indices: 14936983--14937055 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
14936973 TACGTTCTAT
* *
14936983 TTGGCGTGATTCGGGTGGATCAGCTCTTTTGAGCTTCTG
1 TTGGCGTGATTCGGGTGGACCAGCT-TTATGAGCTTCTG
*
14937022 TTGGTGTG-TTCGGGTGGACCAGCTTTATGAGCTT
1 TTGGCGTGATTCGGGTGGACCAGCTTTATGAGCTT
14937056 TTATTGACGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 9 0.29
38 15 0.48
39 7 0.23
ACGTcount: A:0.11, C:0.16, G:0.34, T:0.38
Consensus pattern (38 bp):
TTGGCGTGATTCGGGTGGACCAGCTTTATGAGCTTCTG
Found at i:14937275 original size:22 final size:22
Alignment explanation
Indices: 14937250--14937325 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
14937240 GTTTAATATT
14937250 AATGATATACAATGAAATGGTA
1 AATGATATACAATGAAATGGTA
* * **
14937272 AATGA-AAAAAATGGAAATATTCTTA
1 AATGATATACAAT-G-AA-A-TGGTA
14937297 TTAATGATATACAATGAAATGGTA
1 --AATGATATACAATGAAATGGTA
14937321 AATGA
1 AATGA
14937326 AAAAAATGGA
Statistics
Matches: 39, Mismatches: 8, Indels: 14
0.64 0.13 0.23
Matches are distributed among these distances:
21 5 0.13
22 11 0.28
23 2 0.05
24 4 0.10
25 4 0.10
26 2 0.05
27 6 0.15
28 5 0.13
ACGTcount: A:0.51, C:0.04, G:0.16, T:0.29
Consensus pattern (22 bp):
AATGATATACAATGAAATGGTA
Found at i:14937303 original size:49 final size:49
Alignment explanation
Indices: 14937246--14937345 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
14937236 TCATGTTTAA
14937246 TATTAATGATATACAATGAAATGGTAAATGAAAAAAATGGAAATATTCT
1 TATTAATGATATACAATGAAATGGTAAATGAAAAAAATGGAAATATTCT
14937295 TATTAATGATATACAATGAAATGGTAAATGAAAAAAATGGAAATATTCT
1 TATTAATGATATACAATGAAATGGTAAATGAAAAAAATGGAAATATTCT
14937344 TA
1 TA
14937346 CGTTCATGAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.51, C:0.04, G:0.14, T:0.31
Consensus pattern (49 bp):
TATTAATGATATACAATGAAATGGTAAATGAAAAAAATGGAAATATTCT
Found at i:14938720 original size:21 final size:21
Alignment explanation
Indices: 14938696--14938736 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14938686 ATGTGACTTA
*
14938696 TATTGAATTGAATG-TAAATTG
1 TATTAAATTG-ATGTTAAATTG
14938717 TATTAAATTGATGTTAAATT
1 TATTAAATTGATGTTAAATT
14938737 TTCTTGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.46
Consensus pattern (21 bp):
TATTAAATTGATGTTAAATTG
Found at i:14939235 original size:25 final size:26
Alignment explanation
Indices: 14939187--14939245 Score: 93
Period size: 25 Copynumber: 2.3 Consensus size: 26
14939177 CTTATGAGTG
14939187 TCCCGTTATATGGATCTTCGTGAGCT
1 TCCCGTTATATGGATCTTCGTGAGCT
* *
14939213 TCCCGTTATA-GGCTCTTTGTGAGCT
1 TCCCGTTATATGGATCTTCGTGAGCT
14939238 TCCCGTTA
1 TCCCGTTA
14939246 GTGCTCGCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 21 0.68
26 10 0.32
ACGTcount: A:0.14, C:0.25, G:0.22, T:0.39
Consensus pattern (26 bp):
TCCCGTTATATGGATCTTCGTGAGCT
Found at i:14939341 original size:24 final size:24
Alignment explanation
Indices: 14939284--14939335 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
14939274 CTATCCGGTA
14939284 CTACTCGTTAATTACTCTTCGGAG
1 CTACTCGTTAATTACTCTTCGGAG
* *
14939308 CTACTCGTTAATTGCTCTTTGGAG
1 CTACTCGTTAATTACTCTTCGGAG
14939332 CTAC
1 CTAC
14939336 CTGTTATAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.38
Consensus pattern (24 bp):
CTACTCGTTAATTACTCTTCGGAG
Found at i:14941925 original size:45 final size:44
Alignment explanation
Indices: 14941811--14941948 Score: 168
Period size: 45 Copynumber: 3.0 Consensus size: 44
14941801 CATGGCAAAG
* * *
14941811 TGTGAAATGTAGGTATGATAATTCAGTAAAGAAAACCATACTGAAT
1 TGTGAAA-GTAGGTATGGTATTTCAGT-AAGAAAACCATACTGAGT
* * * *
14941857 AGTTGAACGTAGGTATGGCATTTCAATAACGAAAACCATACTGAGT
1 TG-TGAAAGTAGGTATGGTATTTCAGTAA-GAAAACCATACTGAGT
14941903 TGTGAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAGTAGGTATGGTATTTCAGT-AAGAAAACCATACTGAGT
14941948 T
1 T
14941949 TTAACACTGT
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
45 40 0.51
46 34 0.44
47 4 0.05
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.28
Consensus pattern (44 bp):
TGTGAAAGTAGGTATGGTATTTCAGTAAGAAAACCATACTGAGT
Found at i:14946701 original size:23 final size:23
Alignment explanation
Indices: 14946631--14946714 Score: 106
Period size: 21 Copynumber: 3.9 Consensus size: 23
14946621 CCTGATCAGT
14946631 ATACGACACAT-AAGTGCCTGA-
1 ATACGACACATAAAGTGCCTGAG
** *
14946652 A-ACGACACACGAGGTGCCT--G
1 ATACGACACATAAAGTGCCTGAG
14946672 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCTGAG
14946695 ATACGACACATAAAGTGCCT
1 ATACGACACATAAAGTGCCT
14946715 AATCGGGAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
20 9 0.17
21 23 0.43
23 21 0.40
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAG
Found at i:14946713 original size:44 final size:41
Alignment explanation
Indices: 14946631--14946714 Score: 114
Period size: 44 Copynumber: 2.0 Consensus size: 41
14946621 CCTGATCAGT
* *
14946631 ATACGACACATAAGTGCCTGAAACGACACACGAGGTGCCTG
1 ATACGACACATAAGTGCCTGAAACGACACACAAAGTGCCTG
*
14946672 ATACGACACATAAAGTGCCTGAGATACGACACATAAAGTGCCT
1 ATACGACACAT-AAGTGCCTGA-A-ACGACACACAAAGTGCCT
14946715 AATCGGGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
41 11 0.30
42 10 0.27
43 1 0.03
44 15 0.41
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.17
Consensus pattern (41 bp):
ATACGACACATAAGTGCCTGAAACGACACACAAAGTGCCTG
Found at i:14947384 original size:5 final size:5
Alignment explanation
Indices: 14947374--14947441 Score: 61
Period size: 5 Copynumber: 13.6 Consensus size: 5
14947364 AAAAAAATAT
* * *
14947374 TATTA TATTA TAGTAA TGATTA TGTT- T-TTA TATTA TATTA TTAATA
1 TATTA TATTA TA-TTA T-ATTA TATTA TATTA TATTA TATTA -TATTA
14947420 TATTA TATTA TATTA TA-TA TAT
1 TATTA TATTA TATTA TATTA TAT
14947442 ACATAAAACA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
3 2 0.04
4 6 0.12
5 33 0.63
6 10 0.19
7 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
TATTA
Found at i:14947471 original size:15 final size:15
Alignment explanation
Indices: 14947451--14947496 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
14947441 TACATAAAAC
14947451 AAAAGAAAGAAGAGA
1 AAAAGAAAGAAGAGA
*
14947466 AAAAGAAAGAAAAGA
1 AAAAGAAAGAAGAGA
*
14947481 AACAGAATAGAAGAGA
1 AAAAGAA-AGAAGAGA
14947497 CGAAACAGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 20 0.74
16 7 0.26
ACGTcount: A:0.72, C:0.02, G:0.24, T:0.02
Consensus pattern (15 bp):
AAAAGAAAGAAGAGA
Found at i:14948630 original size:22 final size:24
Alignment explanation
Indices: 14948570--14948651 Score: 125
Period size: 24 Copynumber: 3.5 Consensus size: 24
14948560 ACTTTAGCGC
14948570 GCTCTCTGATATTAGCACGTTGGT
1 GCTCTCTGATATTAGCACGTTGGT
14948594 GCTCTCTGATATTAGCACGTTGGT
1 GCTCTCTGATATTAGCACGTTGGT
* *
14948618 GCTCTCTG-T-TTAGCACATTTGT
1 GCTCTCTGATATTAGCACGTTGGT
14948640 GCTCTCTG-TATT
1 GCTCTCTGATATT
14948652 TGTTCCGTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
22 20 0.36
23 3 0.05
24 32 0.58
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.41
Consensus pattern (24 bp):
GCTCTCTGATATTAGCACGTTGGT
Found at i:14954722 original size:71 final size:71
Alignment explanation
Indices: 14954606--14954748 Score: 259
Period size: 71 Copynumber: 2.0 Consensus size: 71
14954596 ATTTATATAT
*
14954606 CTTTACATTTGATTTTTATTTTCAATAAAAGCGATGTTGAAGGCAGACGTGAAACCTAGGCCCAC
1 CTTTACATTTGATTTTTATTTTCAATAAAAGCGATGTTGAAGGCAGACATGAAACCTAGGCCCAC
14954671 AAGAGC
66 AAGAGC
* *
14954677 CTTTACGTTTGATTTTTATTTTCAATAGAAGCGATGTTGAAGGCAGACATGAAACCTAGGCCCAC
1 CTTTACATTTGATTTTTATTTTCAATAAAAGCGATGTTGAAGGCAGACATGAAACCTAGGCCCAC
14954742 AAGAGC
66 AAGAGC
14954748 C
1 C
14954749 CGTTTGTGAC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (71 bp):
CTTTACATTTGATTTTTATTTTCAATAAAAGCGATGTTGAAGGCAGACATGAAACCTAGGCCCAC
AAGAGC
Found at i:14955283 original size:45 final size:44
Alignment explanation
Indices: 14955127--14955284 Score: 144
Period size: 45 Copynumber: 3.6 Consensus size: 44
14955117 TAGGTTCGAT
* * * *
14955127 AGTGAAGCAGATCGAAAATAGCAGATCTTGCCTTCTTGCATCGA
1 AGTGGAGCAGATCGAAAATAGCAGATCTTGCCTTCCTACATTGA
* * *
14955171 TAGTGAAGCAGATCGAAAATA-AAGCT-TTGCCTTCCTTA-ATTGA
1 -AGTGGAGCAGATCGAAAATAGCAGATCTTGCCTTCC-TACATTGA
* *
14955214 AGTGGAGCAGGT-TAAAGATAGCAGATCTTGCCTTCCTACATTGA
1 AGTGGAGCAGATCGAAA-ATAGCAGATCTTGCCTTCCTACATTGA
* * *
14955258 CAGCGGAGCAGATCGAAGATGGCAGAT
1 -AGTGGAGCAGATCGAAAATAGCAGAT
14955285 TTTACCTCCC
Statistics
Matches: 91, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
41 3 0.03
42 13 0.14
43 17 0.19
44 18 0.20
45 38 0.42
46 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (44 bp):
AGTGGAGCAGATCGAAAATAGCAGATCTTGCCTTCCTACATTGA
Found at i:14955378 original size:44 final size:44
Alignment explanation
Indices: 14955330--14955848 Score: 317
Period size: 44 Copynumber: 11.8 Consensus size: 44
14955320 GCCAGTAATT
*
14955330 TTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATC
1 TTATCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATC
* * ** * ** *
14955374 TTATCTCCCTAGGAATTAGTGGAGTAGATCGAAGATGGCAGATT
1 TTATCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATC
* * * * *
14955418 TTACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC
1 TTATCTCCCTG-GG-CAGCAGTGGAGTAGATTGAAG--ATTACAGATC
* *
14955463 -TATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATTACAGATC
1 TTATCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATC
* ** * ** *
14955506 TTATCTCCCTAGGCATTAGTGGAGTAGATCGAAGATGGCAGATT
1 TTATCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATC
* * * ** *
14955550 TTACCTCCCTGAGGTTA-CAGTGGAGTACATT-AA-A-GCCAGTAATT
1 TTATCTCCCTG-GG-CAGCAGTGGAGTAGATTGAAGATTACAG--ATC
* *
14955594 TTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATC
1 TTATCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATC
** ** * ** *
14955638 TTATCTCCCTAAGCATTAGTGGAGTAGATCGAAGATGGCAGATT
1 TTATCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATC
* * * * *
14955682 TTACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC
1 TTATCTCCCTG-GG-CAGCAGTGGAGTAGATTGAAG--ATTACAGATC
*
14955727 -TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATC
1 TTATCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATC
* * ** * ** *
14955770 TTATCTCTCTAGGCATTAGTGGAGTAGATCGAAGATGGCAGATT
1 TTATCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATC
* * *
14955814 TTACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAG
1 TTATCTCCCTG-GG-CAGCAGTGGAGTAGATTGAAG
14955849 CCAGTAATTC
Statistics
Matches: 358, Mismatches: 91, Indels: 51
0.72 0.18 0.10
Matches are distributed among these distances:
41 6 0.02
42 9 0.03
43 54 0.15
44 212 0.59
45 66 0.18
46 9 0.03
47 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
TTATCTCCCTGGGCAGCAGTGGAGTAGATTGAAGATTACAGATC
Found at i:14955452 original size:132 final size:132
Alignment explanation
Indices: 14955262--14955930 Score: 1151
Period size: 132 Copynumber: 5.1 Consensus size: 132
14955252 CATTGACAGC
*
14955262 GGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
1 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
* *
14955327 ATTTTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGAATTA
66 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCATTA
14955392 GT
131 GT
14955394 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
1 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
*
14955459 ATTCTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCATTA
66 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCATTA
14955524 GT
131 GT
*
14955526 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTA
1 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
* * *
14955591 ATTTTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCATTA
66 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCATTA
14955656 GT
131 GT
14955658 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
1 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
*
14955723 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCTCTAGGCATTA
66 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCATTA
14955788 GT
131 GT
14955790 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
1 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
* * * * * * * *
14955855 ATTCTATCTCTCTGGTC-GACGGTGGAATCGATCGAAGAATAGCAGATCTTATCTCCCTAAGCAG
66 ATTCTATCTCCCTGGGCAG-CAGTGGAATAGATTGAAGATTA-CAGATCTTATCTCCCTAGGCAT
14955919 TAGT
129 TAGT
*
14955923 GAAGTAGA
1 GGAGTAGA
14955931 CTGACGACGG
Statistics
Matches: 511, Mismatches: 24, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
131 1 0.00
132 480 0.94
133 30 0.06
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (132 bp):
GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCATTA
GT
Found at i:14961172 original size:16 final size:16
Alignment explanation
Indices: 14961151--14961202 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
14961141 AGATGAGAAA
14961151 TGAAAAAATGAAAAAG
1 TGAAAAAATGAAAAAG
*
14961167 TGAAAAAATGAAAAAA
1 TGAAAAAATGAAAAAG
*
14961183 TG-AAAAATGGAAAAG
1 TGAAAAAATGAAAAAG
14961198 T-AAAA
1 TGAAAA
14961203 TGGAGAGGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 15 0.47
16 17 0.53
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.13
Consensus pattern (16 bp):
TGAAAAAATGAAAAAG
Found at i:14961196 original size:8 final size:8
Alignment explanation
Indices: 14961148--14961189 Score: 75
Period size: 8 Copynumber: 5.2 Consensus size: 8
14961138 GAGAGATGAG
14961148 AAATGAAA
1 AAATGAAA
14961156 AAATGAAA
1 AAATGAAA
*
14961164 AAGTGAAA
1 AAATGAAA
14961172 AAATGAAA
1 AAATGAAA
14961180 AAATGAAA
1 AAATGAAA
14961188 AA
1 AA
14961190 TGGAAAAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (8 bp):
AAATGAAA
Found at i:14962466 original size:45 final size:43
Alignment explanation
Indices: 14962334--14962479 Score: 123
Period size: 45 Copynumber: 3.3 Consensus size: 43
14962324 AAAATAGCAA
* * * **
14962334 ATCTTGCCTTCCTGCATCGATAGTGAAGCAGATCGAAAATAAAG
1 ATCTTGCCTTCCTGCATTGA-AGTGGAGCAGATCGAAGATGCAG
* ** * **
14962378 -CCTTGCCTTCCTTAATTGAAGTGGAGCAGGTTAAAGATAGCAG
1 ATCTTGCCTTCCTGCATTGAAGTGGAGCAGATCGAAGAT-GCAG
*
14962421 ATCTTGCCTTCCTGCATTGACAGCGGAGCAGATCGAAGATGGCAG
1 ATCTTGCCTTCCTGCATTGA-AGTGGAGCAGATCGAAGAT-GCAG
* *
14962466 ATTTTACCTTCCTG
1 ATCTTGCCTTCCTG
14962480 AGGTTACAAT
Statistics
Matches: 78, Mismatches: 21, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
42 14 0.18
43 17 0.22
44 16 0.21
45 31 0.40
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (43 bp):
ATCTTGCCTTCCTGCATTGAAGTGGAGCAGATCGAAGATGCAG
Found at i:14962563 original size:44 final size:44
Alignment explanation
Indices: 14962513--14962899 Score: 204
Period size: 44 Copynumber: 8.8 Consensus size: 44
14962503 GCCAGTAATT
* *
14962513 TTATCTCCCTGGTCAGTAGTGGAATAGATTGAAGATTACAGATC
1 TTATCTCCCTGGTCAGCAGTGGAGTAGATTGAAGATTACAGATC
** * ** *
14962557 TTATCTCCCTAGG-CATTAGTGGAGTAGATCGAAGATGGCAGATT
1 TTATCTCCCT-GGTCAGCAGTGGAGTAGATTGAAGATTACAGATC
* * * * *
14962601 TTACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC
1 TTATCTCCCT--GGTCAGCAGTGGAGTAGATTGAAG--ATTACAGATC
* *
14962646 -TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATC
1 TTATCTCCCTGGTCAGCAGTGGAGTAGATTGAAGATTACAGATC
* ** * * ** *
14962689 TTATCTCCCT-ATGCATTAGTAGAGTAGATCGAAGATGGCAGATT
1 TTATCTCCCTGGT-CAGCAGTGGAGTAGATTGAAGATTACAGATC
* * * * *
14962733 TTACCTCCCTGATGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC
1 TTATCTCCCTG--GTCAGCAGTGGAGTAGATTGAAG--ATTACAGATC
* * * * *
14962778 -TATCCCCCTGGGCAGCAATGGAATTGATTGAAGATTACAGATC
1 TTATCTCCCTGGTCAGCAGTGGAGTAGATTGAAGATTACAGATC
* * ** *
14962821 TTATCTCCCTAGG-CAGTAGTGGAGTAGATCGAAGATGGCAGATT
1 TTATCTCCCT-GGTCAGCAGTGGAGTAGATTGAAGATTACAGATC
* * *
14962865 TTACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAG
1 TTATCTCCCT--GGTCAGCAGTGGAGTAGATTGAAG
14962900 CCAGTAATTC
Statistics
Matches: 252, Mismatches: 69, Indels: 43
0.69 0.19 0.12
Matches are distributed among these distances:
41 6 0.02
42 7 0.03
43 34 0.13
44 141 0.56
45 56 0.22
46 5 0.02
47 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (44 bp):
TTATCTCCCTGGTCAGCAGTGGAGTAGATTGAAGATTACAGATC
Found at i:14962604 original size:132 final size:132
Alignment explanation
Indices: 14962445--14962982 Score: 853
Period size: 132 Copynumber: 4.1 Consensus size: 132
14962435 CATTGACAGC
* * *
14962445 GGAGCAGATCGAAGATGGCAGATTTTACCTTCCTGAGGTTACAATGGAGTACATTGAAGCCAGTA
1 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
* * * *
14962510 ATTTTATCTCCCTGGTCAGTAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCATTA
66 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTA
14962575 GT
131 GT
14962577 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
1 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
* *
14962642 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTATGCATTA
66 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTA
14962707 GT
131 GT
* *
14962709 AGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGATGTTACAGTGGAGTACATTGAAGCCAGTA
1 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
* * *
14962774 ATTCTATCCCCCTGGGCAGCAATGGAATTGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTA
66 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTA
14962839 GT
131 GT
14962841 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
1 GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
* * * * * * *
14962906 ATTCTATCTCCCTGGTC-GACAGTGGAATCGATCGCAGAATAGTAGATCTTATCTCCCTAAGCAG
66 ATTCTATCTCCCTGGGCAG-CAGTGGAATAGATTGAAGATTA-CAGATCTTATCTCCCTAGGCAG
14962970 TAGT
129 TAGT
*
14962974 GAAGTAGAT
1 GGAGTAGAT
14962983 TGACGACGAC
Statistics
Matches: 378, Mismatches: 26, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
131 1 0.00
132 345 0.91
133 32 0.08
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
GGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTA
GT
Found at i:14962917 original size:44 final size:45
Alignment explanation
Indices: 14962476--14962919 Score: 135
Period size: 44 Copynumber: 10.1 Consensus size: 45
14962466 ATTTTACCTT
* * *
14962476 CCTGAGGTTACAATGGAGTACATTGAAGCCAGTA-ATTTTATCTC
1 CCTGAGGTTACAGTGGAGTAGATTGAAGCCAGTACATTCTATCTC
* * * * *
14962520 CCT--GGTCAGTAGTGGAATAGATTGAAG--ATTACAGATCTTATCTC
1 CCTGAGGTTA-CAGTGGAGTAGATTGAAGCCAGTACA-TTC-TATCTC
* *** * * * *
14962564 CCT-AGGCATT--AGTGGAGTAGATCGAAGATGGCAGATTTTACCTC
1 CCTGAGG--TTACAGTGGAGTAGATTGAAGCCAGTACATTCTATCTC
*
14962608 CCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA-ATTCTATCTC
1 CCTGAGGTTACAGTGGAGTAGATTGAAGCCAGTACATTCTATCTC
* * * *
14962652 CCTG-GG-CAGCAGTGGAATAGATTGAAG--ATTACAGATCTTATCTC
1 CCTGAGGTTA-CAGTGGAGTAGATTGAAGCCAGTACA-TTC-TATCTC
* * * *** * * * *
14962696 CCT-ATGCATT--AGTAGAGTAGATCGAAGATGGCAGATTTTACCTC
1 CCTGA-G-GTTACAGTGGAGTAGATTGAAGCCAGTACATTCTATCTC
* * *
14962740 CCTGATGTTACAGTGGAGTACATTGAAGCCAGTA-ATTCTATCCC
1 CCTGAGGTTACAGTGGAGTAGATTGAAGCCAGTACATTCTATCTC
* * * * * *
14962784 CCTG-GG-CAGCAATGGAATTGATTGAAG--ATTACAGATCTTATCTC
1 CCTGAGGTTA-CAGTGGAGTAGATTGAAGCCAGTACA-TTC-TATCTC
* * * *** * * * *
14962828 CCT-AGG-CAGTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTC
1 CCTGAGGTTA-CAGTGGAGTAGATTGAAGCCAGTACATTCTATCTC
*
14962872 CCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA-ATTCTATCTC
1 CCTGAGGTTACAGTGGAGTAGATTGAAGCCAGTACATTCTATCTC
14962916 CCTG
1 CCTG
14962920 GTCGACAGTG
Statistics
Matches: 280, Mismatches: 86, Indels: 68
0.65 0.20 0.16
Matches are distributed among these distances:
41 9 0.03
42 9 0.03
43 56 0.20
44 135 0.48
45 63 0.22
46 7 0.03
47 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (45 bp):
CCTGAGGTTACAGTGGAGTAGATTGAAGCCAGTACATTCTATCTC
Found at i:14979911 original size:21 final size:19
Alignment explanation
Indices: 14979887--14979928 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
14979877 TTAATTTTTC
14979887 TTTTCTTTCGCTTTTCTTTGT
1 TTTTCTTTCGC--TTCTTTGT
*
14979908 TTTTTTTTCGCTTCTTTGT
1 TTTTCTTTCGCTTCTTTGT
14979927 TT
1 TT
14979929 ATTAAGGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 10 0.50
21 10 0.50
ACGTcount: A:0.00, C:0.17, G:0.10, T:0.74
Consensus pattern (19 bp):
TTTTCTTTCGCTTCTTTGT
Found at i:14982000 original size:30 final size:30
Alignment explanation
Indices: 14981964--14982022 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
14981954 AAACTTAAAA
14981964 CATGTTTATTAAG-TAAAAACTTGAAAATAG
1 CATGTTTATT-AGTTAAAAACTTGAAAATAG
* * *
14981994 CATGTTTCTTAGTTAAAAATTTTAAAATA
1 CATGTTTATTAGTTAAAAACTTGAAAATA
14982023 AAAAAAAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (30 bp):
CATGTTTATTAGTTAAAAACTTGAAAATAG
Found at i:14982155 original size:5 final size:5
Alignment explanation
Indices: 14982147--14982172 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14982137 GAATTTTGTG
14982147 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
14982173 ATATATATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:14982239 original size:13 final size:13
Alignment explanation
Indices: 14982221--14982254 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14982211 TTACCTCATA
14982221 TGGGCCTAATGAT
1 TGGGCCTAATGAT
* *
14982234 TGGGCCCAATGGT
1 TGGGCCTAATGAT
14982247 TGGGCCTA
1 TGGGCCTA
14982255 TGGGGTAGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.35, T:0.26
Consensus pattern (13 bp):
TGGGCCTAATGAT
Found at i:14982508 original size:29 final size:30
Alignment explanation
Indices: 14982429--14982516 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 30
14982419 AAACTTTATA
14982429 AAAATTACATTTTGACCCCTAACT-TTTCTC
1 AAAATTACATTTTGACCCCTAA-TATTTCTC
* * *
14982459 AAATTTTCATTTTGACCCCTAATATTT-TG
1 AAAATTACATTTTGACCCCTAATATTTCTC
* * *
14982488 AAAATTACATTTGGGCCCCTAAAATTTCT
1 AAAATTACATTTTGACCCCTAATATTTCT
14982517 AGATATTATA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
29 24 0.50
30 24 0.50
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCTAATATTTCTC
Found at i:14982927 original size:14 final size:12
Alignment explanation
Indices: 14982908--14982968 Score: 59
Period size: 13 Copynumber: 4.7 Consensus size: 12
14982898 ACAATCAATC
*
14982908 AAAAAAGAAAAG
1 AAAAAAAAAAAG
14982920 TAAAAAAAAAAAG
1 -AAAAAAAAAAAG
*
14982933 AGAAAAAAACACAG
1 A-AAAAAAA-AAAG
14982947 CAAAAAAACAAAAG
1 -AAAAAAA-AAAAG
14982961 AAAAAAAA
1 AAAAAAAA
14982969 CTCAAAAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
12 2 0.05
13 25 0.61
14 12 0.29
15 2 0.05
ACGTcount: A:0.82, C:0.07, G:0.10, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:14982969 original size:14 final size:14
Alignment explanation
Indices: 14982908--14982969 Score: 65
Period size: 14 Copynumber: 4.5 Consensus size: 14
14982898 ACAATCAATC
* *
14982908 AAAAAAGAAAAGTA
1 AAAAAACAAAAGAA
14982922 AAAAAA-AAAAGAGA
1 AAAAAACAAAAGA-A
* *
14982936 AAAAAAC-ACAGCA
1 AAAAAACAAAAGAA
14982949 AAAAAACAAAAGAA
1 AAAAAACAAAAGAA
14982963 AAAAAAC
1 AAAAAAC
14982970 TCAAAAATTC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
13 13 0.32
14 27 0.68
ACGTcount: A:0.81, C:0.08, G:0.10, T:0.02
Consensus pattern (14 bp):
AAAAAACAAAAGAA
Found at i:14983293 original size:22 final size:25
Alignment explanation
Indices: 14983240--14983290 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
14983230 CAAAGAAGAA
14983240 GAGAAAAAAAAGAAAGAACAAAAAG
1 GAGAAAAAAAAGAAAGAACAAAAAG
14983265 GAGAAAAAGAAA-AAAGAA-AAAAAG
1 GAGAAAAA-AAAGAAAGAACAAAAAG
14983289 GA
1 GA
14983291 AAATTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 8 0.32
25 14 0.56
26 3 0.12
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (25 bp):
GAGAAAAAAAAGAAAGAACAAAAAG
Found at i:14983956 original size:13 final size:13
Alignment explanation
Indices: 14983938--14983962 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14983928 TAAATCAATT
14983938 TCTTTGTTATCCA
1 TCTTTGTTATCCA
14983951 TCTTTGTTATCC
1 TCTTTGTTATCC
14983963 TCGACAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.24, G:0.08, T:0.56
Consensus pattern (13 bp):
TCTTTGTTATCCA
Found at i:14985427 original size:44 final size:45
Alignment explanation
Indices: 14984824--14985427 Score: 142
Period size: 44 Copynumber: 13.7 Consensus size: 45
14984814 TATCTCCATG
* * ** **
14984824 GGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAA
1 GGCAGCAGTGGAGTAGATCAAAGATGGCAGATCTTATCTCCCTAA
* * * * * *
14984869 -GCAGTAGTGGAGCAGATCAAGGATGGCAGATTTTACCTCCCTGA
1 GGCAGCAGTGGAGTAGATCAAAGATGGCAGATCTTATCTCCCTAA
* * * ** *** * *
14984913 GGTTA-CAATGGAGTACATTGAAGCCAGTA-AT-TCTATCTCCCT-G
1 GG-CAGCAGTGGAGTAGATCAAAGATGGCAGATCT-TATCTCCCTAA
** **
14984956 GGCAGCAGTGGAGTAGATTGAAGATTACAGATCTTATCTCCCTAA
1 GGCAGCAGTGGAGTAGATCAAAGATGGCAGATCTTATCTCCCTAA
* * * * ** * * * *
14985001 -GCAGTAGTGGAGCATATCAATGATGGTGGTTTTTACCTCCCTGA
1 GGCAGCAGTGGAGTAGATCAAAGATGGCAGATCTTATCTCCCTAA
* * ** *
14985045 GGTTA-CAGTGGAGTACATTGAA-A--CCAGTAAT-TCTATCTCCCT-A
1 GG-CAGCAGTGGAGTAGATCAAAGATGGCAG--ATCT-TATCTCCCTAA
* * ** **
14985088 GGTAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAA
1 GGCAGCAGTGGAGTAGATCAAAGATGGCAGATCTTATCTCCCTAA
* ** ** * * *
14985133 -GCAGTAGTGGAACAGATCAAAGATGGTGGATTTTACCTCCCTGA
1 GGCAGCAGTGGAGTAGATCAAAGATGGCAGATCTTATCTCCCTAA
* * * * *
14985177 GGTTA-CAGTGGAGTACATTAAAGCCAT--TA-AT-TCTATCTCCCT-G
1 GG-CAGCAGTGGAGTAGATCAAAG--ATGGCAGATCT-TATCTCCCTAA
* * ** **
14985220 GGTAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAA
1 GGCAGCAGTGGAGTAGATCAAAGATGGCAGATCTTATCTCCCTAA
* * * * * * *
14985265 -GCAGTAGTGGAGCAGATCAAGGATGGCGGATTTTACCTCCCTGA
1 GGCAGCAGTGGAGTAGATCAAAGATGGCAGATCTTATCTCCCTAA
* * ** * * * *
14985309 GGTTA-CAGTGGAGTACATTGAAGTTAGTA-AT-TCTATCTCCCT-G
1 GG-CAGCAGTGGAGTAGATCAAAGATGGCAGATCT-TATCTCCCTAA
* ** **
14985352 GGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCC-AA
1 GGCAGCAGTGGAGTAGATCAAAGATGGCAGATCTTATCTCCCTAA
*
14985396 GGCAGTAGTGGAGTAGATCAAAGATGGCAGAT
1 GGCAGCAGTGGAGTAGATCAAAGATGGCAGAT
14985428 TTTACCTCTC
Statistics
Matches: 393, Mismatches: 130, Indels: 73
0.66 0.22 0.12
Matches are distributed among these distances:
41 2 0.01
42 7 0.02
43 79 0.20
44 235 0.60
45 61 0.16
46 7 0.02
47 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (45 bp):
GGCAGCAGTGGAGTAGATCAAAGATGGCAGATCTTATCTCCCTAA
Found at i:14985559 original size:132 final size:132
Alignment explanation
Indices: 14984762--14985507 Score: 1197
Period size: 132 Copynumber: 5.7 Consensus size: 132
14984752 CAGGTTGATA
* *
14984762 GCAGATTTTACCTCCCTGAGGTTACAGTAGAGTACATTGAAGCCAGTAATTCTATCTCCATGGGC
1 GCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGC
* *
14984827 AACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGA
66 AGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
14984892 TG
131 TG
*
14984894 GCAGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGC
1 GCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGC
* * *
14984959 AGCAGTGGAGTAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCATATCAATGA
66 AGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
14985024 TG
131 TG
** * * * *
14985026 GTGGTTTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAACCAGTAATTCTATCTCCCTAGGT
1 GCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGC
*
14985091 AGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGA
66 AGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
14985156 TG
131 TG
** * * *
14985158 GTGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCATTAATTCTATCTCCCTGGGT
1 GCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGC
*
14985223 AGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGA
66 AGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
14985288 TG
131 TG
* **
14985290 GCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGTTAGTAATTCTATCTCCCTGGGC
1 GCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGC
*
14985355 AGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCC-AAGGCAGTAGTGGAGTAGATCAAAG
66 AGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAA-GCAGTAGTGGAGCAGATCAAAG
14985419 ATG
130 ATG
* * *
14985422 GCAGATTTTACCTCTCTGAGGTTACAGTGGAGTATATTGAAGCCAGTAATTCTATCTCCCTGGTC
1 GCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGC
* * *
14985487 GGCAGTGGAATCGATCGAAGA
66 AGCAGTGGAATAGATTGAAGA
14985508 AAGCAGATCT
Statistics
Matches: 571, Mismatches: 42, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
131 2 0.00
132 569 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
GCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGC
AGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
TG
Found at i:14987008 original size:13 final size:15
Alignment explanation
Indices: 14986973--14987012 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
14986963 AAATTAGTCC
*
14986973 TCCGTTTTGTTAATT
1 TCCGTTTTTTTAATT
14986988 TCCGTTTTTTTAA-T
1 TCCGTTTTTTTAATT
14987002 T-CGTTTTTTTA
1 TCCGTTTTTTTA
14987013 TTTTTTTACT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 10 0.42
14 2 0.08
15 12 0.50
ACGTcount: A:0.12, C:0.12, G:0.10, T:0.65
Consensus pattern (15 bp):
TCCGTTTTTTTAATT
Found at i:14988371 original size:18 final size:17
Alignment explanation
Indices: 14988348--14988392 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 17
14988338 GACACCGGTA
14988348 TTTCAAAAATTTCCGTG
1 TTTCAAAAATTTCCGTG
*
14988365 TTTTCAAAAAATTTCTGTG
1 -TTTC-AAAAATTTCCGTG
14988384 TTTCAAAAA
1 TTTCAAAAA
14988393 AAAATTTCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 5 0.20
18 8 0.32
19 12 0.48
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (17 bp):
TTTCAAAAATTTCCGTG
Found at i:14988393 original size:20 final size:18
Alignment explanation
Indices: 14988352--14988449 Score: 60
Period size: 19 Copynumber: 5.3 Consensus size: 18
14988342 CCGGTATTTC
14988352 AAAAATTTCCGTGTTTTC-A
1 AAAAATTT-CGTG-TTTCAA
14988371 AAAAATTTCTGTGTTTCAAAA
1 AAAAATTTC-GTGTTTC--AA
*
14988392 AAAAATTTCGTGTTTTC-T
1 AAAAATTTCGTG-TTTCAA
* *
14988410 ACAATTTTCGTG-TT-AA
1 AAAAATTTCGTGTTTCAA
* *
14988426 AAAAATTTTGAGTTTTCAA
1 AAAAATTTCGTG-TTTCAA
14988445 AAAAA
1 AAAAA
14988450 AAATTTCTCG
Statistics
Matches: 62, Mismatches: 8, Indels: 18
0.70 0.09 0.20
Matches are distributed among these distances:
16 10 0.16
18 17 0.27
19 18 0.29
20 3 0.05
21 14 0.23
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (18 bp):
AAAAATTTCGTGTTTCAA
Found at i:14988394 original size:19 final size:19
Alignment explanation
Indices: 14988348--14988393 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 19
14988338 GACACCGGTA
14988348 TTTC-AAAAATTTCCGTGT
1 TTTCAAAAAATTTCCGTGT
*
14988366 TTTCAAAAAATTTCTGTG-
1 TTTCAAAAAATTTCCGTGT
14988384 TTTCAAAAAA
1 TTTCAAAAAA
14988394 AAATTTCGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 14 0.54
19 12 0.46
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (19 bp):
TTTCAAAAAATTTCCGTGT
Found at i:14996734 original size:27 final size:27
Alignment explanation
Indices: 14996704--14996762 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
14996694 TTGTTTACAA
14996704 TTGACTTTTCATTGAAAA-ATACATAAT
1 TTGACTTTTC-TTGAAAACATACATAAT
* * *
14996731 TTGATTTTTCTTTAAAAGCATGCATAAT
1 TTGACTTTTCTTGAAAA-CATACATAAT
14996759 TTGA
1 TTGA
14996763 TAGTTTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.22
27 9 0.33
28 12 0.44
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (27 bp):
TTGACTTTTCTTGAAAACATACATAAT
Found at i:15000591 original size:3 final size:3
Alignment explanation
Indices: 15000583--15000613 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
15000573 GAAAACTGAA
15000583 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
15000614 GATGACAGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:15019355 original size:17 final size:18
Alignment explanation
Indices: 15019335--15019373 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
15019325 TGTAAAGAAC
15019335 AAAATTAT-TTA-AATTAT
1 AAAATTATATTATAATT-T
15019352 AAAATTATATTATAATTT
1 AAAATTATATTATAATTT
15019370 AAAA
1 AAAA
15019374 AAAACACTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 8 0.40
18 8 0.40
19 4 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAATTATATTATAATTT
Found at i:15026451 original size:17 final size:17
Alignment explanation
Indices: 15026429--15026462 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15026419 ATCCACTAAT
*
15026429 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
15026446 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
15026463 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:15031090 original size:17 final size:17
Alignment explanation
Indices: 15031068--15031101 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15031058 ATCCACTAAT
*
15031068 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
15031085 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
15031102 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:15039572 original size:13 final size:13
Alignment explanation
Indices: 15039507--15039567 Score: 104
Period size: 13 Copynumber: 4.7 Consensus size: 13
15039497 ACACTCAAAT
15039507 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
*
15039520 TTCTGAAAAGCAC
1 TTCTCAAAAGCAC
15039533 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
*
15039546 TTCTCAAAAGCAA
1 TTCTCAAAAGCAC
15039559 TTCTCAAAA
1 TTCTCAAAA
15039568 ACAATGAAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 45 1.00
ACGTcount: A:0.41, C:0.26, G:0.08, T:0.25
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:15042020 original size:22 final size:23
Alignment explanation
Indices: 15041989--15042032 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
15041979 TATTTTTAAG
* *
15041989 TTTATAATATTTTATATTATTTT
1 TTTATAATATATTATATAATTTT
15042012 TTTAT-ATATATTATATAATTT
1 TTTATAATATATTATATAATTT
15042033 ATAACATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (23 bp):
TTTATAATATATTATATAATTTT
Found at i:15042622 original size:19 final size:19
Alignment explanation
Indices: 15042591--15042640 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
15042581 TTTTAACATA
15042591 ATTTTTAATAATTTATATTT
1 ATTTTTAA-AATTTATATTT
*
15042611 ATTTTTAAAATTTTTATTT
1 ATTTTTAAAATTTATATTT
*
15042630 -TTTTTAGAATT
1 ATTTTTAAAATT
15042641 GTTGTTAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 10 0.36
19 10 0.36
20 8 0.29
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
ATTTTTAAAATTTATATTT
Found at i:15043950 original size:25 final size:24
Alignment explanation
Indices: 15043867--15043998 Score: 139
Period size: 25 Copynumber: 5.5 Consensus size: 24
15043857 TTGTTATGCA
*
15043867 CTAATGAACAGAGAGCACTGAAGTG
1 CTAAT-AACAGAGAGCACTGACGTG
*
15043892 CT-AT-ACAGAGAGCACAT-ATGTG
1 CTAATAACAGAGAGCAC-TGACGTG
15043914 CT-A-AACAGAGAGCACTGACGTG
1 CTAATAACAGAGAGCACTGACGTG
*
15043936 CTAATAATCAGAGAGCACTAACGTG
1 CTAATAA-CAGAGAGCACTGACGTG
* *
15043961 CTAATAATCAAAGAGCACTGATGTG
1 CTAATAA-CAGAGAGCACTGACGTG
15043986 CTAATAATCAGAG
1 CTAATAA-CAGAG
15043999 GGCGTGCTAA
Statistics
Matches: 94, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
21 1 0.01
22 35 0.37
23 2 0.02
24 4 0.04
25 52 0.55
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (24 bp):
CTAATAACAGAGAGCACTGACGTG
Found at i:15044902 original size:26 final size:27
Alignment explanation
Indices: 15044859--15044915 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
15044849 AAATCCCAAA
* *
15044859 TTTTCTTTCTTTCCTTCCCT-TTTTCT
1 TTTTCTTTCTTTCATTCCCTGTTTTCG
15044885 TTTTCTTTCCTTT-ATTCCCTGTTTTCG
1 TTTTCTTT-CTTTCATTCCCTGTTTTCG
15044912 TTTT
1 TTTT
15044916 GCTATTCTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.02, C:0.26, G:0.04, T:0.68
Consensus pattern (27 bp):
TTTTCTTTCTTTCATTCCCTGTTTTCG
Found at i:15077216 original size:30 final size:30
Alignment explanation
Indices: 15077180--15077239 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
15077170 ATGAAGAGTG
15077180 AAATTGATTTCATAGGTACTTGGGTCTTTC
1 AAATTGATTTCATAGGTACTTGGGTCTTTC
15077210 AAATTGATTTCATAGGTACTTGGGTCTTTC
1 AAATTGATTTCATAGGTACTTGGGTCTTTC
15077240 TATATCAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.13, G:0.20, T:0.43
Consensus pattern (30 bp):
AAATTGATTTCATAGGTACTTGGGTCTTTC
Found at i:15082573 original size:16 final size:17
Alignment explanation
Indices: 15082539--15082580 Score: 61
Period size: 15 Copynumber: 2.5 Consensus size: 17
15082529 CATATAAATT
15082539 ATTATTTTTAAATATAC
1 ATTATTTTTAAATATAC
15082556 ATATATTTTT-AA-ATAC
1 AT-TATTTTTAAATATAC
15082572 ATTATTTTT
1 ATTATTTTT
15082581 GTGTAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.29
16 6 0.25
17 4 0.17
18 7 0.29
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTATTTTTAAATATAC
Found at i:15083303 original size:62 final size:59
Alignment explanation
Indices: 15083236--15083396 Score: 180
Period size: 60 Copynumber: 2.6 Consensus size: 59
15083226 ATAGTTTTGG
* * * *
15083236 ATTAGTATTTTGTATGAATATTATAATTTTTTTGCTTTTTATAATTATTTTAAAATTAATTT
1 ATTAGTATTTAGGAT-AATATTATAA-ATTTTTG-TGTTTATAATTATTTTAAAATTAATTT
* * *
15083298 GTTAGTAATTTAGGATTATATTATAAATTTTTGTGTTTGTAATTATTTTAAAATTAATTT
1 ATTAGT-ATTTAGGATAATATTATAAATTTTTGTGTTTATAATTATTTTAAAATTAATTT
* *
15083358 ATTAGTAATTTAGGATTAA-GTTATAAATTGTTGTGTTTA
1 ATTAGT-ATTTAGGA-TAATATTATAAATTTTTGTGTTTA
15083397 GTTTAGTATT
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
60 56 0.66
61 8 0.09
62 14 0.16
63 7 0.08
ACGTcount: A:0.33, C:0.01, G:0.11, T:0.55
Consensus pattern (59 bp):
ATTAGTATTTAGGATAATATTATAAATTTTTGTGTTTATAATTATTTTAAAATTAATTT
Found at i:15083356 original size:60 final size:60
Alignment explanation
Indices: 15083253--15083396 Score: 209
Period size: 60 Copynumber: 2.4 Consensus size: 60
15083243 TTTTGTATGA
* * *
15083253 ATATTATAATTTTTTTGCTTTTTATAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATT
1 ATATTATAA-ATTTTTG-TGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATT
*
15083315 ATATTATAAATTTTTGTGTTTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATT
1 ATATTATAAATTTTTGTGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATT
*
15083375 A-AGTTATAAATTGTTGTGTTTA
1 ATA-TTATAAATTTTTGTGTTTA
15083397 GTTTAGTATT
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
59 1 0.01
60 59 0.79
61 6 0.08
62 9 0.12
ACGTcount: A:0.33, C:0.01, G:0.10, T:0.56
Consensus pattern (60 bp):
ATATTATAAATTTTTGTGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATT
Found at i:15083533 original size:16 final size:16
Alignment explanation
Indices: 15083509--15083547 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
15083499 TTAACTCATT
15083509 TAATTTTTATATAATG
1 TAATTTTTATATAATG
*
15083525 TACTTTTTATATAATG
1 TAATTTTTATATAATG
15083541 TAATTTT
1 TAATTTT
15083548 ATTTGATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (16 bp):
TAATTTTTATATAATG
Found at i:15084063 original size:50 final size:50
Alignment explanation
Indices: 15083961--15084065 Score: 129
Period size: 50 Copynumber: 2.1 Consensus size: 50
15083951 TTATTAAAAG
* *
15083961 AAAAAATTAATATAAAATATTCATTAGCGCCTGTCAAATAGGCGCCACTA
1 AAAAAATTAATATAAAATATTCATTAACGCCTGTCAAATAAGCGCCACTA
* * * * * * *
15084011 AAAAAATTAATATAAAATATTTATTAATGTCTTTCAGATAAGCTCCATTA
1 AAAAAATTAATATAAAATATTCATTAACGCCTGTCAAATAAGCGCCACTA
15084061 AAAAA
1 AAAAA
15084066 TATATTATTT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.48, C:0.13, G:0.09, T:0.30
Consensus pattern (50 bp):
AAAAAATTAATATAAAATATTCATTAACGCCTGTCAAATAAGCGCCACTA
Found at i:15093136 original size:32 final size:32
Alignment explanation
Indices: 15093090--15093163 Score: 130
Period size: 32 Copynumber: 2.3 Consensus size: 32
15093080 CATACTCTCA
* *
15093090 ACAAATGAATGCTTCATATAAAATTGTTGGTT
1 ACAAATGCACGCTTCATATAAAATTGTTGGTT
15093122 ACAAATGCACGCTTCATATAAAATTGTTGGTT
1 ACAAATGCACGCTTCATATAAAATTGTTGGTT
15093154 ACAAATGCAC
1 ACAAATGCAC
15093164 AAAATAATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (32 bp):
ACAAATGCACGCTTCATATAAAATTGTTGGTT
Found at i:15093176 original size:32 final size:32
Alignment explanation
Indices: 15093105--15093176 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
15093095 TGAATGCTTC
*** *
15093105 ATATAAAATTGTTGGTTACAAATGCACGCTTC
1 ATATAAAATTGTTGGTTACAAATGCACAAATA
15093137 ATATAAAATTGTTGGTTACAAATGCACAAAATA
1 ATATAAAATTGTTGGTTACAAATGCAC-AAATA
15093170 AT-TAAAA
1 ATATAAAA
15093177 CACATACACC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 32 0.91
33 3 0.09
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.32
Consensus pattern (32 bp):
ATATAAAATTGTTGGTTACAAATGCACAAATA
Found at i:15115558 original size:18 final size:18
Alignment explanation
Indices: 15115526--15115569 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
15115516 AGTAAAATTT
*
15115526 TATTATGATTAAAAAATAA
1 TATTAT-ATTAAAAAACAA
*
15115545 TATTATATTTAAAAACAA
1 TATTATATTAAAAAACAA
*
15115563 TAATATA
1 TATTATA
15115570 AAAAATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (18 bp):
TATTATATTAAAAAACAA
Found at i:15123472 original size:6 final size:6
Alignment explanation
Indices: 15123463--15123492 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
15123453 GATTGGATTT
*
15123463 GGATGG GGATGG GGATGG GGATGG GAATGG
1 GGATGG GGATGG GGATGG GGATGG GGATGG
15123493 CGCCCAAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.20, C:0.00, G:0.63, T:0.17
Consensus pattern (6 bp):
GGATGG
Found at i:15123928 original size:18 final size:18
Alignment explanation
Indices: 15123907--15123946 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
15123897 CTTAAGAAAA
*
15123907 TTTTACAAGTATTTTTAT
1 TTTTAAAAGTATTTTTAT
* *
15123925 TTTTAAAATTTTTTTTAT
1 TTTTAAAAGTATTTTTAT
15123943 TTTT
1 TTTT
15123947 TTTATTTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (18 bp):
TTTTAAAAGTATTTTTAT
Found at i:15127309 original size:5 final size:5
Alignment explanation
Indices: 15127273--15127308 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
15127263 CAATTCCTGC
*
15127273 TTTGAT TTTGT TTTGT TTTGT TTTGT TTTGT ATTGT
1 TTTG-T TTTGT TTTGT TTTGT TTTGT TTTGT TTTGT
15127309 AATTGCTGCG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.06, C:0.00, G:0.19, T:0.75
Consensus pattern (5 bp):
TTTGT
Found at i:15131393 original size:29 final size:29
Alignment explanation
Indices: 15131375--15131435 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
15131365 AACTAGATCA
15131375 AAATGTTTCCCATAAATAAAAATGAGAGC
1 AAATGTTTCCCATAAATAAAAATGAGAGC
*
15131404 AAATGTTTCCCATAAATAAAAGTGAGAGC
1 AAATGTTTCCCATAAATAAAAATGAGAGC
15131433 AAA
1 AAA
15131436 AATGCATAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.49, C:0.13, G:0.15, T:0.23
Consensus pattern (29 bp):
AAATGTTTCCCATAAATAAAAATGAGAGC
Found at i:15136663 original size:24 final size:24
Alignment explanation
Indices: 15136636--15136681 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
15136626 CTAATTAAAT
*
15136636 TTTAAAAATAATTAATATTTATTG
1 TTTAAAAATAATTAAAATTTATTG
*
15136660 TTTAAAAATATTTAAAATTTAT
1 TTTAAAAATAATTAAAATTTAT
15136682 ATTTCATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
TTTAAAAATAATTAAAATTTATTG
Found at i:15144925 original size:13 final size:13
Alignment explanation
Indices: 15144907--15144932 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15144897 AAGATTGGGA
15144907 GAAACCTTGTTCT
1 GAAACCTTGTTCT
15144920 GAAACCTTGTTCT
1 GAAACCTTGTTCT
15144933 TCCTTTTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
GAAACCTTGTTCT
Done.