Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 39 of 208
Found at i:15149462 original size:22 final size:22
Alignment explanation
Indices: 15149419--15149467 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
15149409 TTCTCCTTGT
*
15149419 ATTTTTATTTTTAGAATATTAA
1 ATTTTTATTTTCAGAATATTAA
* *
15149441 TTTTTTATCTTTCA-AATTTTAA
1 ATTTTTAT-TTTCAGAATATTAA
15149463 ATTTT
1 ATTTT
15149468 AAGTCCAGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (22 bp):
ATTTTTATTTTCAGAATATTAA
Found at i:15152626 original size:3 final size:3
Alignment explanation
Indices: 15152618--15152664 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
15152608 CATATTTTAA
15152618 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
15152665 TCTGTAACTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:15158111 original size:129 final size:129
Alignment explanation
Indices: 15157881--15158141 Score: 461
Period size: 129 Copynumber: 2.0 Consensus size: 129
15157871 CATAAGCAGT
15157881 GCAGTAGTGCATTTGTACGCTCTGATTCGCGATTGCTCAAGAACATAGGTAAGGTATAGGTGTGC
1 GCAGTAGTGCATTTGTACGCTCTGATTCGCGATTGCTCAAGAACATAGGTAAGGTATAGGTGTGC
* *
15157946 AATATATGTAGTCTCATGCTGTGTGAAACACTTGTAAGTGGCAAAATAAGGAAAACCCAAAAGA
66 AATATATGTAATCTCATGCTGTGTGAAACACTTGTAAGTGGCAAAATAAGAAAAACCCAAAAGA
*
15158010 GCAGTAGTGCATTTGTACGCTCTGATT-GCCGATTGCTCAAGAACATAGGTAAGGTGTAGGTGTG
1 GCAGTAGTGCATTTGTACGCTCTGATTCG-CGATTGCTCAAGAACATAGGTAAGGTATAGGTGTG
* *
15158074 TAATATATGTAATCTCATGTTGTGTGAAACACTTGTAAGTGGCAAAATAAGAAAAACCCAAAAGA
65 CAATATATGTAATCTCATGCTGTGTGAAACACTTGTAAGTGGCAAAATAAGAAAAACCCAAAAGA
15158139 GCA
1 GCA
15158142 ATAAAATCGC
Statistics
Matches: 126, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
128 1 0.01
129 125 0.99
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.27
Consensus pattern (129 bp):
GCAGTAGTGCATTTGTACGCTCTGATTCGCGATTGCTCAAGAACATAGGTAAGGTATAGGTGTGC
AATATATGTAATCTCATGCTGTGTGAAACACTTGTAAGTGGCAAAATAAGAAAAACCCAAAAGA
Found at i:15158645 original size:14 final size:14
Alignment explanation
Indices: 15158626--15158659 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
15158616 GTTTGGCAGT
*
15158626 AAAATGGTTTCTGG
1 AAAATGATTTCTGG
15158640 AAAATGATTTCTGG
1 AAAATGATTTCTGG
15158654 AAAATG
1 AAAATG
15158660 TTTTACTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:15158672 original size:20 final size:20
Alignment explanation
Indices: 15158647--15158686 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
15158637 TGGAAAATGA
* *
15158647 TTTCTGGAAAATGTTTTACT
1 TTTCTGAAAAATGATTTACT
15158667 TTTCTGAAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
15158687 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:15158678 original size:34 final size:35
Alignment explanation
Indices: 15158633--15158698 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 35
15158623 AGTAAAATGG
* *
15158633 TTTCTGGAAAATGATTT-CTGGAAAATGTTTTACT
1 TTTCTGAAAAATGATTTACTGGAAAATATTTTACT
15158667 TTTCTGAAAAATGATTTACTGGAAAATATTTT
1 TTTCTGAAAAATGATTTACTGGAAAATATTTT
15158699 CTCGTGTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (35 bp):
TTTCTGAAAAATGATTTACTGGAAAATATTTTACT
Found at i:15158842 original size:40 final size:39
Alignment explanation
Indices: 15158798--15158914 Score: 106
Period size: 40 Copynumber: 3.1 Consensus size: 39
15158788 TATATTAATA
15158798 ATTTTTTATATTTTAAATTGTTTTTACATATATTGCAATG
1 ATTTTTTATATTTTAAATT-TTTTTACATATATTGCAATG
* * * * *
15158838 ATTTTGTTGT-TTTTACA-----TAATATATATT--AATA
1 ATTTT-TTATATTTTAAATTTTTTTACATATATTGCAATG
15158870 ATTTTTTATATTTTAAATTATTTTTACATATATTGCAATG
1 ATTTTTTATATTTTAAATT-TTTTTACATATATTGCAATG
15158910 ATTTT
1 ATTTT
15158915 ATAATCAAAT
Statistics
Matches: 57, Mismatches: 10, Indels: 20
0.66 0.11 0.23
Matches are distributed among these distances:
31 3 0.05
32 14 0.25
34 9 0.16
38 9 0.16
40 19 0.33
41 3 0.05
ACGTcount: A:0.32, C:0.04, G:0.06, T:0.58
Consensus pattern (39 bp):
ATTTTTTATATTTTAAATTTTTTTACATATATTGCAATG
Found at i:15158870 original size:72 final size:71
Alignment explanation
Indices: 15158772--15158914 Score: 259
Period size: 72 Copynumber: 2.0 Consensus size: 71
15158762 TTCCGGAAAA
*
15158772 GTTGATTTTACATATATATATTAATAATTTTTTATATTTTAAATTGTTTTTACATATATTGCAAT
1 GTTGATTTTACATATATATATTAATAATTTTTTATATTTTAAATTATTTTTACATATATTGCAAT
15158837 GATTTT
66 GATTTT
*
15158843 GTTGTTTTTACATAATATATATTAATAATTTTTTATATTTTAAATTATTTTTACATATATTGCAA
1 GTTGATTTTACAT-ATATATATTAATAATTTTTTATATTTTAAATTATTTTTACATATATTGCAA
15158908 TGATTTT
65 TGATTTT
15158915 ATAATCAAAT
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 12 0.17
72 57 0.83
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (71 bp):
GTTGATTTTACATATATATATTAATAATTTTTTATATTTTAAATTATTTTTACATATATTGCAAT
GATTTT
Found at i:15161264 original size:13 final size:13
Alignment explanation
Indices: 15161246--15161270 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15161236 TACCTTTCTA
15161246 AAGAAAGTCTGCG
1 AAGAAAGTCTGCG
15161259 AAGAAAGTCTGC
1 AAGAAAGTCTGC
15161271 CCAAGACAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.28, T:0.16
Consensus pattern (13 bp):
AAGAAAGTCTGCG
Found at i:15162911 original size:22 final size:22
Alignment explanation
Indices: 15162883--15162949 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
15162873 TGTTATTGAT
15162883 CAGTGGTAGCTTCGGCTACATA
1 CAGTGGTAGCTTCGGCTACATA
*
15162905 CAGTGGTAGCTTCGGCTACATTT
1 CAGTGGTAGCTTCGGCTACA-TA
15162928 CAGTGGTAGCTTCGGCTACATA
1 CAGTGGTAGCTTCGGCTACATA
15162950 TCTGTGTGGC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
22 21 0.50
23 21 0.50
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (22 bp):
CAGTGGTAGCTTCGGCTACATA
Found at i:15162935 original size:23 final size:23
Alignment explanation
Indices: 15162882--15162948 Score: 118
Period size: 23 Copynumber: 3.0 Consensus size: 23
15162872 GTGTTATTGA
15162882 TCAGTGGTAGCTTCGGCTACA-T
1 TCAGTGGTAGCTTCGGCTACATT
*
15162904 ACAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
15162927 TCAGTGGTAGCTTCGGCTACAT
1 TCAGTGGTAGCTTCGGCTACAT
15162949 ATCTGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
22 20 0.48
23 22 0.52
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:15186240 original size:50 final size:50
Alignment explanation
Indices: 15186116--15186364 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
15186106 GATAATAACA
* * ** * *
15186116 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
15186167 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
15186217 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
15186267 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
15186322 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
15186365 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:15186294 original size:100 final size:104
Alignment explanation
Indices: 15186115--15186364 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
15186105 TGATAATAAC
**
15186115 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
15186180 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
15186217 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
15186280 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
15186322 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
15186365 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:15186480 original size:13 final size:13
Alignment explanation
Indices: 15186459--15186490 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
15186449 GCTTGGATCA
*
15186459 TCATCAAATAAAT
1 TCATAAAATAAAT
15186472 TCATAAAATAAAT
1 TCATAAAATAAAT
15186485 TCATAA
1 TCATAA
15186491 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:15186737 original size:30 final size:30
Alignment explanation
Indices: 15186702--15186759 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
15186692 CCTCGACTCT
*
15186702 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
15186732 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
15186760 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:15187610 original size:21 final size:21
Alignment explanation
Indices: 15187586--15187627 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
15187576 TTTTCCTAAG
15187586 ATGTGAATTAGATTGAATTGA
1 ATGTGAATTAGATTGAATTGA
**
15187607 ATGTGAATTTTATTGAATTGA
1 ATGTGAATTAGATTGAATTGA
15187628 GTTAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (21 bp):
ATGTGAATTAGATTGAATTGA
Found at i:15188265 original size:24 final size:24
Alignment explanation
Indices: 15188181--15188285 Score: 85
Period size: 24 Copynumber: 4.3 Consensus size: 24
15188171 CTTGAACTTT
*
15188181 CCGATATATGGCTATC-TAGAGCTTC
1 CCGAT-TATGGCTCTCAT-GAGCTTC
*
15188206 CCGATTAATGGCTCTACA-GAGCTAC
1 CCGATT-ATGGCTCT-CATGAGCTTC
15188231 CCG-TTATTGGCT-TGCATGAGCTTC
1 CCGATTA-TGGCTCT-CATGAGCTTC
* *
15188255 CTGATTATGGCTCTTATGAGCTTC
1 CCGATTATGGCTCTCATGAGCTTC
15188279 CCG-TTAT
1 CCGATTAT
15188286 AAGGCCCGGA
Statistics
Matches: 66, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
23 8 0.12
24 32 0.48
25 25 0.38
26 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (24 bp):
CCGATTATGGCTCTCATGAGCTTC
Found at i:15188341 original size:25 final size:25
Alignment explanation
Indices: 15188199--15188339 Score: 92
Period size: 25 Copynumber: 5.7 Consensus size: 25
15188189 TGGCTATCTA
15188199 GAGCTTCCCGATTA-ATGGCTCTACA-
1 GAGCTTCCCG-TTATATGGCTC-ACAT
* **
15188224 GAGCTACCCGTTAT-TGGCTTGCAT
1 GAGCTTCCCGTTATATGGCTCACAT
* * **
15188248 GAGCTTCCTGAT-TATGGCTCTTAT
1 GAGCTTCCCGTTATATGGCTCACAT
* * **
15188272 GAGCTTCCCGTTATAAGGCCCGGAT
1 GAGCTTCCCGTTATATGGCTCACAT
* * * * *
15188297 AAGCCTCCTGTTACATGGTTCACAT
1 GAGCTTCCCGTTATATGGCTCACAT
15188322 GAGCTTCCCGTTATATGG
1 GAGCTTCCCGTTATATGG
15188340 TTTGAAAGAG
Statistics
Matches: 84, Mismatches: 28, Indels: 8
0.70 0.23 0.07
Matches are distributed among these distances:
23 3 0.04
24 34 0.40
25 47 0.56
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.32
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCACAT
Found at i:15189509 original size:23 final size:25
Alignment explanation
Indices: 15189471--15189517 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
15189461 TTCGTGTAAC
15189471 TTAATTGTGCAATTATATGTTTGAA
1 TTAATTGTGCAATTATATGTTTGAA
*
15189496 TTAATT-TG-AATTATTTGTTTGA
1 TTAATTGTGCAATTATATGTTTGA
15189518 GAATTGTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 13 0.62
24 2 0.10
25 6 0.29
ACGTcount: A:0.30, C:0.02, G:0.15, T:0.53
Consensus pattern (25 bp):
TTAATTGTGCAATTATATGTTTGAA
Found at i:15190967 original size:22 final size:20
Alignment explanation
Indices: 15190942--15190995 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
15190932 AAGTTCTGGA
15190942 ATTTTATGATTAATTATCATAT
1 ATTTTATGATTAATT-TCAT-T
* *
15190964 ATTTTAAGCTTTAATTTCATT
1 ATTTTATG-ATTAATTTCATT
*
15190985 ATATTATGATT
1 ATTTTATGATT
15190996 TTATTAAGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
20 2 0.08
21 7 0.27
22 11 0.42
23 6 0.23
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.56
Consensus pattern (20 bp):
ATTTTATGATTAATTTCATT
Found at i:15194479 original size:24 final size:24
Alignment explanation
Indices: 15194443--15194490 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
15194433 CAAATGAATG
15194443 GTAAGATAATTTTCGTTATACGAA
1 GTAAGATAATTTTCGTTATACGAA
*
15194467 GTAAGATAGTTTTCGTTATACGAA
1 GTAAGATAATTTTCGTTATACGAA
15194491 CTTACTAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (24 bp):
GTAAGATAATTTTCGTTATACGAA
Found at i:15197904 original size:22 final size:21
Alignment explanation
Indices: 15197866--15197906 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
15197856 CATTTGAAAT
**
15197866 AAATTTTAAAATTTATTTTTA
1 AAATTTTAAAAAATATTTTTA
15197887 AAATTTTCAAAAAATATTTT
1 AAATTTT-AAAAAATATTTT
15197907 CGGTAAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
AAATTTTAAAAAATATTTTTA
Found at i:15228280 original size:75 final size:75
Alignment explanation
Indices: 15228148--15228292 Score: 263
Period size: 75 Copynumber: 1.9 Consensus size: 75
15228138 CTTAAGTTTA
* * *
15228148 AAACTTTATTTAAAGAAAATCTGAATTTTTACTACTTTATTGAAAAAGTTTTAATTTTATAAAGT
1 AAACCTTACTTAAAGAAAATCAGAATTTTTACTACTTTATTGAAAAAGTTTTAATTTTATAAAGT
15228213 AGAATAACTC
66 AGAATAACTC
15228223 AAACCTTACTTAAAGAAAATCAGAATTTTTACTACTTTATTGAAAAAGTTTTAATTTTATAAAGT
1 AAACCTTACTTAAAGAAAATCAGAATTTTTACTACTTTATTGAAAAAGTTTTAATTTTATAAAGT
15228288 AGAAT
66 AGAAT
15228293 TAAATTCTAC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 67 1.00
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.40
Consensus pattern (75 bp):
AAACCTTACTTAAAGAAAATCAGAATTTTTACTACTTTATTGAAAAAGTTTTAATTTTATAAAGT
AGAATAACTC
Found at i:15230260 original size:20 final size:20
Alignment explanation
Indices: 15230237--15230315 Score: 76
Period size: 20 Copynumber: 3.9 Consensus size: 20
15230227 TAGGCCGCCC
15230237 ATATTAT-TTTTTTAATATTT
1 ATATTATATTTTTT-ATATTT
15230257 ATATTATATTTTTTATATTT
1 ATATTATATTTTTTATATTT
15230277 AATACTTTTATATGTTTTT-TATTT
1 -ATA---TTATAT-TTTTTATATTT
15230301 AT-TTA-ATTTTTTATA
1 ATATTATATTTTTTATA
15230316 ATCATCTTAA
Statistics
Matches: 52, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
17 5 0.10
18 4 0.08
19 3 0.06
20 13 0.25
21 9 0.17
23 2 0.04
24 11 0.21
25 5 0.10
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.68
Consensus pattern (20 bp):
ATATTATATTTTTTATATTT
Found at i:15239051 original size:46 final size:46
Alignment explanation
Indices: 15238999--15239267 Score: 290
Period size: 46 Copynumber: 5.6 Consensus size: 46
15238989 TTTGAGTACT
* **
15238999 TCTGATCAAATGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAATGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* * *
15239045 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAATGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
15239097 TCTGATCAAGTGACAAAGGGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAATGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
15239143 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAATGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTA
**
15239195 TCTGATCAAGA-GACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAA-ATGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
15239241 TCTGATCAAGA-GACAAAGTGATAAGTG
1 TCTGATCAA-ATGACAAAGTGATAAGTG
15239268 GCTACACTTA
Statistics
Matches: 195, Mismatches: 15, Indels: 26
0.83 0.06 0.11
Matches are distributed among these distances:
46 112 0.57
52 83 0.43
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (46 bp):
TCTGATCAAATGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:15239129 original size:98 final size:98
Alignment explanation
Indices: 15238999--15239267 Score: 439
Period size: 98 Copynumber: 2.7 Consensus size: 98
15238989 TTTGAGTACT
* *
15238999 TCTGATCAAATGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
15239064 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* **
15239097 TCTGATCAAGTGACAAAGGGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
15239162 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
15239195 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
15239260 GATAAGTG
65 GAAAAGTG
15239268 GCTACACTTA
Statistics
Matches: 157, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
98 146 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:15239275 original size:37 final size:37
Alignment explanation
Indices: 15239231--15239376 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
15239221 GATAGCTTTA
*
15239231 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
15239268 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
15239305 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
15239342 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
15239377 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:15249529 original size:66 final size:66
Alignment explanation
Indices: 15249448--15249593 Score: 211
Period size: 66 Copynumber: 2.2 Consensus size: 66
15249438 GGAAATGTTT
* * * * *
15249448 AAATGTAAGACCATAGCTTGGTTATGACATTTTAATGAAAAGACCTTAACTAGGTTATGGCACTA
1 AAATGTAAGACCATAGCTGGGCTATGACATTCTAATGAAAAGACCATAACTAGGTTATGACACTA
15249513 C
66 C
** * *
15249514 AAATGTAAGACCATAGCTGGGCTATGGTATTCTGATGAAAAGACCATAACTGGGTTATGACACTA
1 AAATGTAAGACCATAGCTGGGCTATGACATTCTAATGAAAAGACCATAACTAGGTTATGACACTA
15249579 C
66 C
15249580 AAATGTAAGACCAT
1 AAATGTAAGACCAT
15249594 GGCAAGGCCA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 71 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (66 bp):
AAATGTAAGACCATAGCTGGGCTATGACATTCTAATGAAAAGACCATAACTAGGTTATGACACTA
C
Found at i:15249590 original size:33 final size:32
Alignment explanation
Indices: 15249448--15249593 Score: 103
Period size: 33 Copynumber: 4.4 Consensus size: 32
15249438 GGAAATGTTT
* * **
15249448 AAATGTAAGACCATAGCTTGGTTATGACATTT
1 AAATGTAAGACCATAACTGGGTTATGACATAC
* * * * *
15249480 TAATGAAAAGACCTTAACTAGGTTATGGCACTAC
1 AAATG-TAAGACCATAACTGGGTTATGACA-TAC
* * ** *
15249514 AAATGTAAGACCATAGCTGGGCTATGGTATTC
1 AAATGTAAGACCATAACTGGGTTATGACATAC
** *
15249546 TGATGAAAAGACCATAACTGGGTTATGACACTAC
1 AAATG-TAAGACCATAACTGGGTTATGACA-TAC
15249580 AAATGTAAGACCAT
1 AAATGTAAGACCAT
15249594 GGCAAGGCCA
Statistics
Matches: 83, Mismatches: 27, Indels: 7
0.71 0.23 0.06
Matches are distributed among these distances:
32 9 0.11
33 64 0.77
34 10 0.12
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (32 bp):
AAATGTAAGACCATAACTGGGTTATGACATAC
Found at i:15249627 original size:66 final size:66
Alignment explanation
Indices: 15249482--15249612 Score: 163
Period size: 66 Copynumber: 2.0 Consensus size: 66
15249472 TGACATTTTA
* * ** * ** *
15249482 ATGAAAAGACCTTAACTAGGTTATGGCACTACAAATGTAAGACCATAGCTGGGCTATGGTATTCT
1 ATGAAAAGACCATAACTAGGTTATGACACTACAAATGTAAGACCATAGCAAGGCCATGCAATGCT
15249547 G
66 G
* *
15249548 ATGAAAAGACCATAACTGGGTTATGACACTACAAATGTAAGACCATGGCAAGGCCATGACAATGC
1 ATGAAAAGACCATAACTAGGTTATGACACTACAAATGTAAGACCATAGCAAGGCCATG-CAATGC
15249613 ATGTGTAAGA
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
66 51 0.94
67 3 0.06
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (66 bp):
ATGAAAAGACCATAACTAGGTTATGACACTACAAATGTAAGACCATAGCAAGGCCATGCAATGCT
G
Found at i:15251557 original size:21 final size:22
Alignment explanation
Indices: 15251524--15251564 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
15251514 AATAAAGTTT
15251524 TATAGTATGTGTGTATGGTATA
1 TATAGTATGTGTGTATGGTATA
* *
15251546 TATA-TATTTGTGTGTGGTA
1 TATAGTATGTGTGTATGGTA
15251565 ATTTAGATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (22 bp):
TATAGTATGTGTGTATGGTATA
Found at i:15256643 original size:17 final size:18
Alignment explanation
Indices: 15256621--15256654 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
15256611 TAACTATCAT
15256621 TAAAAGAAT-AAAGAAAC
1 TAAAAGAATAAAAGAAAC
15256638 TAAAAGAATAAAAGAAA
1 TAAAAGAATAAAAGAAA
15256655 GAAATGAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.74, C:0.03, G:0.12, T:0.12
Consensus pattern (18 bp):
TAAAAGAATAAAAGAAAC
Found at i:15260353 original size:44 final size:44
Alignment explanation
Indices: 15260303--15260466 Score: 229
Period size: 44 Copynumber: 3.6 Consensus size: 44
15260293 TACGTATGAT
* *
15260303 CACTTATCACTTGTCATTGATCAGATAAGTGTAGCCAAAGCTAC
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
15260347 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
* *
15260391 CACTTATCACTTGTCACTTGTCACTGATCAGATAAGTGCAGCTAAAACTAC
1 CAC-T-T-A----TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
15260442 CACTTATCACTTGTCACTGATCAGA
1 CACTTATCACTTGTCACTGATCAGA
15260467 AGTACTCAAA
Statistics
Matches: 109, Mismatches: 4, Indels: 14
0.86 0.03 0.11
Matches are distributed among these distances:
44 64 0.59
45 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 1 0.01
50 1 0.01
51 39 0.36
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (44 bp):
CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:15260402 original size:51 final size:51
Alignment explanation
Indices: 15260347--15260459 Score: 199
Period size: 51 Copynumber: 2.2 Consensus size: 51
15260337 CCAAAGCTAC
* * *
15260347 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTGTCACTTGTCACTGATCAGATAAGTGCAGCTAAAACTACCACTTAT
15260398 CACTTGTCACTTGTCACTGATCAGATAAGTGCAGCTAAAACTACCACTTAT
1 CACTTGTCACTTGTCACTGATCAGATAAGTGCAGCTAAAACTACCACTTAT
15260449 CACTTGTCACT
1 CACTTGTCACT
15260460 GATCAGAAGT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (51 bp):
CACTTGTCACTTGTCACTGATCAGATAAGTGCAGCTAAAACTACCACTTAT
Found at i:15263351 original size:46 final size:45
Alignment explanation
Indices: 15263280--15263688 Score: 462
Period size: 46 Copynumber: 9.6 Consensus size: 45
15263270 TACGTATGAT
*
15263280 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAA-GCTAC
*
15263324 CACTTATCAATTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAA-GCTAC
15263370 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTAC
15263416 CACTTATCACTTTGTCACTTGATCAGATAA--GT-G-T-AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
* * * *
15263452 CACTTATCATTTTTTCTCTTGATCAGATAAGTGTAGCTAAAGCAAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTAC
* *
15263498 CATTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-AG-T--
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
15263535 -ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTAC
*
15263580 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
15263616 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTATAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTA-AGCTAC
* *
15263662 CACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
15263689 AGTACTCAAA
Statistics
Matches: 316, Mismatches: 16, Indels: 64
0.80 0.04 0.16
Matches are distributed among these distances:
36 83 0.26
38 6 0.02
39 3 0.01
40 9 0.03
42 9 0.03
43 4 0.01
44 15 0.05
45 5 0.02
46 180 0.57
47 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.35
Consensus pattern (45 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
Found at i:15263457 original size:36 final size:36
Alignment explanation
Indices: 15263416--15263652 Score: 240
Period size: 36 Copynumber: 6.0 Consensus size: 36
15263406 CTAAAGCTAC
15263416 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
* * *
15263452 CACTTATCATTTTTTCTCTTGATCAGATAAGTGTAGCTAAAG
1 CACTTATCACTTTGTCACTTGATCAGATAA--GT-G-T--AG
*
15263494 CAACCATTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
1 C-A-C--TTATCACTTTGTCACTTGATCAGATAAGTGTAG
*
15263534 TACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAG
1 CACTTATCACTTTGTCACTTGATCAGATAA--GT-G-T--AG
*
15263576 CTACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
1 ----CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
15263616 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
15263652 C
1 C
15263653 TATAGCTACC
Statistics
Matches: 171, Mismatches: 10, Indels: 40
0.77 0.05 0.18
Matches are distributed among these distances:
36 89 0.52
38 5 0.03
39 3 0.02
40 6 0.04
42 7 0.04
43 3 0.02
44 5 0.03
46 53 0.31
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
Found at i:15263507 original size:82 final size:82
Alignment explanation
Indices: 15263370--15263688 Score: 557
Period size: 82 Copynumber: 3.9 Consensus size: 82
15263360 CTAAGGCTAC
*
15263370 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
15263435 TGATCAGATAAGTGTAG
66 TGATCAGATAAGTGTAG
* * * * *
15263452 CACTTATCATTTTTTCTCTTGATCAGATAAGTGTAGCTAAAGCAACCATTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
15263517 TGATCAGATAAGTGTAG
66 TGATCAGATAAGTGTAG
*
15263534 TACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
15263599 TGATCAGATAAGTGTAG
66 TGATCAGATAAGTGTAG
* *
15263616 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTATAGCTACCACTTATCACTTTATCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
15263681 TGATCAGA
66 TGATCAGA
15263689 AGTACTCAAA
Statistics
Matches: 222, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 222 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (82 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
TGATCAGATAAGTGTAG
Found at i:15263584 original size:128 final size:134
Alignment explanation
Indices: 15263279--15263688 Score: 444
Period size: 128 Copynumber: 3.2 Consensus size: 134
15263269 TTACGTATGA
* * *
15263279 TCACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAAGGCTACCACTTATCAATTTGTCAC
1 TCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAATTTGTCTC
* *
15263342 TTGATCAGATAAGTGTAGCTAAGGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
66 TTGATCAGATAAGTGTAGCTAAAGCAACCACTTATCACTTTGTCACTTGATCAGATAAG-GTAGC
15263407 TAAAGC
130 T-AAGC
* *
15263413 TACCACTTATCACTTTGTCACTTGATCAGATAA--GT-G-T--AG----CACTTATCATTTTTTC
1 T--CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAATTTGTC
* *
15263468 TCTTGATCAGATAAGTGTAGCTAAAGCAACCATTTATCACTTTGTCTCTTGATCAGATAA-GT-G
64 TCTTGATCAGATAAGTGTAGCTAAAGCAACCACTTATCACTTTGTCACTTGATCAGATAAGGTAG
15263531 -T-AG-
129 CTAAGC
*
15263534 T-ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTC
1 TCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAATTTGTCTC
15263598 TTGATCAGATAA--GT-G-T--AG----CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
66 TTGATCAGATAAGTGTAGCTAAAGCAACCACTTATCACTTTGTCACTTGATCAGATAAG-GTAGC
15263653 TATAGC
130 TA-AGC
* *
15263659 TACCACTTATCACTTTATCTCTTGATCAGA
1 T--CACTTATCACTTTGTCACTTGATCAGA
15263689 AGTACTCAAA
Statistics
Matches: 237, Mismatches: 15, Indels: 54
0.77 0.05 0.18
Matches are distributed among these distances:
118 57 0.24
120 4 0.02
121 3 0.01
122 6 0.03
124 6 0.03
125 3 0.01
126 4 0.02
128 121 0.51
132 1 0.00
134 2 0.01
135 1 0.00
136 12 0.05
137 5 0.02
138 12 0.05
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (134 bp):
TCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAATTTGTCTC
TTGATCAGATAAGTGTAGCTAAAGCAACCACTTATCACTTTGTCACTTGATCAGATAAGGTAGCT
AAGC
Found at i:15266826 original size:14 final size:15
Alignment explanation
Indices: 15266790--15266830 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
15266780 CAATATTCAA
* *
15266790 AATTAAT-TTAATAT
1 AATTAATATTATTTT
15266804 AATTAATATTATTTT
1 AATTAATATTATTTT
15266819 AATT-ATATTATT
1 AATTAATATTATT
15266831 AATTTAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 15 0.62
15 9 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
AATTAATATTATTTT
Found at i:15266828 original size:20 final size:20
Alignment explanation
Indices: 15266791--15266842 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
15266781 AATATTCAAA
15266791 ATTAATTTAATATAATTAAT
1 ATTAATTTAATATAATTAAT
*
15266811 ATTATTTTAATTATATTATTAAT
1 ATTAATTTAA-TATA--ATTAAT
15266834 -TTAATTTAA
1 ATTAATTTAA
15266843 AATTTAACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 9 0.33
21 4 0.15
22 8 0.30
23 6 0.22
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTAATTTAATATAATTAAT
Found at i:15266831 original size:23 final size:22
Alignment explanation
Indices: 15266800--15266842 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
15266790 AATTAATTTA
*
15266800 ATATAATTAATATTATTTTAATT
1 ATATAATTAAT-TTAATTTAATT
*
15266823 ATATTATTAATTTAATTTAA
1 ATATAATTAATTTAATTTAA
15266843 AATTTAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
ATATAATTAATTTAATTTAATT
Found at i:15266836 original size:17 final size:15
Alignment explanation
Indices: 15266790--15266839 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 15
15266780 CAATATTCAA
*
15266790 AATTAAT-TTAATAT
1 AATTAATATTAATTT
*
15266804 AATTAATATTATTTT
1 AATTAATATTAATTT
15266819 AATTATATTATTAATTT
1 AATTA-A-TATTAATTT
15266836 AATT
1 AATT
15266840 TAAAATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
14 7 0.23
15 10 0.33
16 1 0.03
17 12 0.40
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
AATTAATATTAATTT
Found at i:15272325 original size:13 final size:14
Alignment explanation
Indices: 15272298--15272327 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
15272288 AAAAATAAAA
15272298 TTTTAATTTTAATT
1 TTTTAATTTTAATT
15272312 TTTTAATTTT-ATT
1 TTTTAATTTTAATT
15272325 TTT
1 TTT
15272328 AAAATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTAATTTTAATT
Found at i:15272335 original size:20 final size:20
Alignment explanation
Indices: 15272296--15272335 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
15272286 TTAAAAATAA
**
15272296 AATTTTAATTTTAATTTTTT
1 AATTTTAATTTTAAAATTTT
*
15272316 AATTTTATTTTTAAAATTTT
1 AATTTTAATTTTAAAATTTT
15272336 GGAAACATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
AATTTTAATTTTAAAATTTT
Found at i:15275638 original size:24 final size:24
Alignment explanation
Indices: 15275611--15275684 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
15275601 ATGGAAAATT
*
15275611 GTGAAAAGTAGGTATGGTGTTTCA
1 GTGAAAAGTAGGTATGGAGTTTCA
* * *
15275635 GTGAAAA-AAGCATATTGAG-TT--
1 GTGAAAAGTAG-GTATGGAGTTTCA
15275656 GTGAAAAGTAGGTATGGAGTTTCA
1 GTGAAAAGTAGGTATGGAGTTTCA
15275680 GTGAA
1 GTGAA
15275685 GAAAACCATA
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
21 13 0.34
22 4 0.11
23 4 0.11
24 17 0.45
ACGTcount: A:0.35, C:0.04, G:0.31, T:0.30
Consensus pattern (24 bp):
GTGAAAAGTAGGTATGGAGTTTCA
Found at i:15275660 original size:45 final size:46
Alignment explanation
Indices: 15275609--15275747 Score: 217
Period size: 46 Copynumber: 3.0 Consensus size: 46
15275599 CCATGGAAAA
*
15275609 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAA-AAAAGCATATTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATATTGAG
*
15275654 TTGTGAAAAGTAGGTATGGAGTTTCAGTGAAGAAAACCATATTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATATTGAG
* * * *
15275700 TTGTGAAAAGTATGTATGGTATTTCAGTGAAGAAAACCAGACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATATTGAG
15275746 TT
1 TT
15275748 ATAGCATTGT
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
45 30 0.35
46 56 0.65
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.30
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATATTGAG
Found at i:15275661 original size:21 final size:21
Alignment explanation
Indices: 15275635--15275708 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 21
15275625 TGGTGTTTCA
15275635 GTGAAAAAAGCATATTGAGTT
1 GTGAAAAAAGCATATTGAGTT
* * *
15275656 GTGAAAAGTAG-GTATGGAGTTT
1 GTGAAAA-AAGCATATTGAG-TT
*
15275678 CAGTGAAGAAAACCATATTGAGTT
1 --GTGAA-AAAAGCATATTGAGTT
15275702 GTGAAAA
1 GTGAAAA
15275709 GTATGTATGG
Statistics
Matches: 40, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
21 15 0.38
22 9 0.22
24 8 0.20
25 8 0.20
ACGTcount: A:0.41, C:0.05, G:0.27, T:0.27
Consensus pattern (21 bp):
GTGAAAAAAGCATATTGAGTT
Found at i:15278476 original size:39 final size:37
Alignment explanation
Indices: 15278429--15278499 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
15278419 TCTCTCTTTA
*
15278429 TATATATATATATTATAATATTTAATAAATTACTCTT
1 TATATATATATATTATAATATTTAACAAATTACTCTT
*
15278466 TATGTATATATATTATAATATTTAACAAATTACT
1 TATATATATATATTATAATATTTAACAAATTACT
15278500 ATTATTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.49
Consensus pattern (37 bp):
TATATATATATATTATAATATTTAACAAATTACTCTT
Found at i:15278906 original size:29 final size:31
Alignment explanation
Indices: 15278865--15278923 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
15278855 CTTAACAAGA
*
15278865 AAATGCCTCTAAAATAATAAC-TAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAAATTAAC
*
15278895 AAATGTCT-TAAAATAATAACAAAAATTAA
1 AAATGCCTCTAAAATAATAACAAAAATTAA
15278924 GAGTAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27
Consensus pattern (31 bp):
AAATGCCTCTAAAATAATAACAAAAATTAAC
Found at i:15280544 original size:46 final size:46
Alignment explanation
Indices: 15280477--15280622 Score: 265
Period size: 46 Copynumber: 3.2 Consensus size: 46
15280467 ACGATGCTAT
* *
15280477 AACTCAGTATGGTTTCCTTCACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
15280523 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
*
15280569 AACTTAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
15280615 AACTCAGT
1 AACTCAGT
15280623 TTTATTGTTA
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 96 1.00
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:15287132 original size:17 final size:17
Alignment explanation
Indices: 15287112--15287148 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
15287102 AATTTTTGAA
15287112 TTAGTGAATTCTGTGAT
1 TTAGTGAATTCTGTGAT
*
15287129 TTAGTGAATTTTGTGAT
1 TTAGTGAATTCTGTGAT
15287146 TTA
1 TTA
15287149 AAAAGAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.03, G:0.22, T:0.51
Consensus pattern (17 bp):
TTAGTGAATTCTGTGAT
Found at i:15287959 original size:46 final size:46
Alignment explanation
Indices: 15287901--15287994 Score: 154
Period size: 46 Copynumber: 2.0 Consensus size: 46
15287891 CCATGGAAAA
*
15287901 TTGTGAACAGTAGGTATGATGTTTCAGTGAA-GAAAGCCATACTGAG
1 TTGTGAAAAGTAGGTATGATGTTTCAGTGAAGGAAA-CCATACTGAG
*
15287947 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGGAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGATGTTTCAGTGAAGGAAACCATACTGAG
15287993 TT
1 TT
15287995 ATAACATTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 41 0.91
47 4 0.09
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.30
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGATGTTTCAGTGAAGGAAACCATACTGAG
Found at i:15300027 original size:23 final size:23
Alignment explanation
Indices: 15300001--15300047 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
15299991 AAAAAAACTA
15300001 ATTTATTCTTTGATTTAATAATG
1 ATTTATTCTTTGATTTAATAATG
15300024 ATTTATTCTTTGATTTAATAATG
1 ATTTATTCTTTGATTTAATAATG
15300047 A
1 A
15300048 CAGCTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.55
Consensus pattern (23 bp):
ATTTATTCTTTGATTTAATAATG
Found at i:15300054 original size:20 final size:22
Alignment explanation
Indices: 15300008--15300054 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
15299998 CTAATTTATT
* *
15300008 CTTTGATTTAATAATGATTTATT
1 CTTTGATTTAATAATGA-TCATG
15300031 CTTTGATTTAATAATGA-CA-G
1 CTTTGATTTAATAATGATCATG
15300051 CTTT
1 CTTT
15300055 TTTTCATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 4 0.18
21 1 0.05
23 17 0.77
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.51
Consensus pattern (22 bp):
CTTTGATTTAATAATGATCATG
Found at i:15302398 original size:2 final size:2
Alignment explanation
Indices: 15302391--15302421 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
15302381 CTGAAAAACA
15302391 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
15302422 ATGACCAGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:15303134 original size:24 final size:24
Alignment explanation
Indices: 15303090--15303135 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
15303080 TATTCCTAAA
*
15303090 CTCATTATTTATATCTTATAAATG
1 CTCATTATTTATATCTAATAAATG
* *
15303114 CTCATTATTTATTTGTAATAAA
1 CTCATTATTTATATCTAATAAA
15303136 ACTGATTCTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.11, G:0.04, T:0.50
Consensus pattern (24 bp):
CTCATTATTTATATCTAATAAATG
Found at i:15315264 original size:3 final size:3
Alignment explanation
Indices: 15315256--15315289 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
15315246 TAATTAAAAG
15315256 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
15315290 ACCAGCAGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:15319012 original size:3 final size:3
Alignment explanation
Indices: 15319004--15319029 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
15318994 TGGGGCACTC
15319004 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
15319030 GAATGCTCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:15323633 original size:17 final size:17
Alignment explanation
Indices: 15323613--15323658 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
15323603 AAACATTCTC
*
15323613 ATTAAATTTATATTAGT
1 ATTAAATTTAAATTAGT
*
15323630 ATTAAATGTAAATTAGT
1 ATTAAATTTAAATTAGT
15323647 -TTAAAATTTAAA
1 ATT-AAATTTAAA
15323659 AATTTTATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 2 0.08
17 23 0.92
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.46
Consensus pattern (17 bp):
ATTAAATTTAAATTAGT
Found at i:15324250 original size:15 final size:15
Alignment explanation
Indices: 15324230--15324260 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15324220 TCTTCTAATA
*
15324230 TTCTAATTCAATGTT
1 TTCTAATTCAAAGTT
15324245 TTCTAATTCAAAGTT
1 TTCTAATTCAAAGTT
15324260 T
1 T
15324261 AGTTGATTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (15 bp):
TTCTAATTCAAAGTT
Found at i:15324552 original size:21 final size:21
Alignment explanation
Indices: 15324519--15324564 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
15324509 TTTTTAATAT
*
15324519 TTTTATATATTTTAAAATAAA
1 TTTTAAATATTTTAAAATAAA
* *
15324540 TTTTAAATTTTTTAAAATTAA
1 TTTTAAATATTTTAAAATAAA
15324561 TTTT
1 TTTT
15324565 TTACTAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTAAATATTTTAAAATAAA
Found at i:15325237 original size:12 final size:12
Alignment explanation
Indices: 15325220--15325246 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
15325210 TTTGGTAAAC
15325220 TTGCTGCAACTG
1 TTGCTGCAACTG
15325232 TTGCTGCAACTG
1 TTGCTGCAACTG
15325244 TTG
1 TTG
15325247 ATTGAACTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (12 bp):
TTGCTGCAACTG
Found at i:15328800 original size:33 final size:33
Alignment explanation
Indices: 15328758--15328826 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
15328748 GATCAAGTTG
15328758 AAGCAGATACAAAGCGTGTCGTTGGAACATAGT
1 AAGCAGATACAAAGCGTGTCGTTGGAACATAGT
15328791 AAGCAGATACAAAGCGTGTCGTTGGAACATAGT
1 AAGCAGATACAAAGCGTGTCGTTGGAACATAGT
15328824 AAG
1 AAG
15328827 TGCATAAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.38, C:0.14, G:0.28, T:0.20
Consensus pattern (33 bp):
AAGCAGATACAAAGCGTGTCGTTGGAACATAGT
Found at i:15329198 original size:11 final size:10
Alignment explanation
Indices: 15329183--15329311 Score: 63
Period size: 11 Copynumber: 12.5 Consensus size: 10
15329173 TATTTTTTTA
15329183 ATTTTAAAAT
1 ATTTTAAAAT
15329193 ACTTTTAAAAT
1 A-TTTTAAAAT
15329204 ACTTTTTTAAAAT
1 A---TTTTAAAAT
*
15329217 -TTTT-TAAT
1 ATTTTAAAAT
15329225 -TTTTAAAATT
1 ATTTTAAAA-T
*
15329235 TTTTTAAAATT
1 ATTTTAAAA-T
*
15329246 TTTTTAAAAAT
1 ATTTT-AAAAT
*
15329257 TTTTTAAAAT
1 ATTTTAAAAT
**
15329267 ACTTTTTTAAT
1 A-TTTTAAAAT
*
15329278 -TTTT-TAA-
1 ATTTTAAAAT
15329285 ATTTTAAAAT
1 ATTTTAAAAT
15329295 ATTTTTAAAAT
1 A-TTTTAAAAT
15329306 ACTTTT
1 A-TTTT
15329312 TTAATTTTTA
Statistics
Matches: 99, Mismatches: 8, Indels: 23
0.76 0.06 0.18
Matches are distributed among these distances:
8 14 0.14
9 12 0.12
10 8 0.08
11 52 0.53
12 4 0.04
13 9 0.09
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (10 bp):
ATTTTAAAAT
Found at i:15329256 original size:40 final size:39
Alignment explanation
Indices: 15329164--15329263 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 39
15329154 TAAATATTTT
* *
15329164 TATTTTTTATATTTTTTTAATTTTAAAATACTTTTAAAA
1 TATTTTTTAAAATTTTTTAATTTTAAAATACTTTTAAAA
**
15329203 TACTTTTTTAAAATTTTTTAATTTTTAAAATTTTTTTAAAA
1 TA-TTTTTTAAAATTTTTTAA-TTTTAAAATACTTTTAAAA
15329244 T-TTTTTTAAAAATTTTTTAA
1 TATTTTTT-AAAATTTTTTAA
15329264 AATACTTTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
39 8 0.15
40 28 0.52
41 18 0.33
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (39 bp):
TATTTTTTAAAATTTTTTAATTTTAAAATACTTTTAAAA
Found at i:15329262 original size:50 final size:50
Alignment explanation
Indices: 15329165--15329337 Score: 183
Period size: 50 Copynumber: 3.4 Consensus size: 50
15329155 AAATATTTTT
** *
15329165 ATTTTTTATATTTTTTTAA-TTTTAAAATACTTTTAAAATACTTTTTTAAA
1 ATTTTTTA-ATTTTTAAAATTTTTAAAATATTTTTAAAATACTTTTTTAAA
*
15329215 ATTTTTTAATTTTTAAAATTTTTTTAAAATTTTTTTAAAA-A-TTTTTTAAAA
1 ATTTTTTAATTTTTAAAA--TTTTTAAAATATTTTTAAAATACTTTTTT-AAA
* *
15329266 TACTTTTTTAATTTTTTAAA-TTTTAAAATATTTTTAAAATACTTTTTTAATT
1 -A-TTTTTTAATTTTTAAAATTTTTAAAATATTTTTAAAATACTTTTTTAA-A
*
15329318 TTTATTTTAATTTTTAAAAT
1 ATT-TTTTAATTTTTAAAAT
15329338 AAATTTTTGG
Statistics
Matches: 103, Mismatches: 9, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
49 8 0.08
50 34 0.33
51 21 0.20
52 24 0.23
53 16 0.16
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (50 bp):
ATTTTTTAATTTTTAAAATTTTTAAAATATTTTTAAAATACTTTTTTAAA
Found at i:15329282 original size:8 final size:9
Alignment explanation
Indices: 15329206--15329303 Score: 65
Period size: 10 Copynumber: 10.0 Consensus size: 9
15329196 TTTAAAATAC
15329206 TTTTTTAAAA
1 TTTTTT-AAA
15329216 TTTTTT-AA
1 TTTTTTAAA
*
15329224 TTTTTAAAA
1 TTTTTTAAA
15329233 TTTTTTTAAAA
1 -TTTTTT-AAA
15329244 TTTTTTTAAAAA
1 -TTTTTT--AAA
15329256 TTTTTTAAAA
1 TTTTTT-AAA
*
15329266 TACTTTTTTAA
1 T--TTTTTAAA
15329277 TTTTTTAAA
1 TTTTTTAAA
*
15329286 -TTTTAAAA
1 TTTTTTAAA
15329294 TATTTTTAAA
1 T-TTTTTAAA
15329304 ATACTTTTTT
Statistics
Matches: 74, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
8 14 0.19
9 9 0.12
10 23 0.31
11 19 0.26
12 9 0.12
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:15329354 original size:32 final size:32
Alignment explanation
Indices: 15329295--15329356 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
15329285 ATTTTAAAAT
** *
15329295 ATTTTTAAAATACTTTTTTAATTTTTATTTTA
1 ATTTTTAAAATAAATTTTTAATATTTATTTTA
**
15329327 ATTTTTAAAATAAATTTTTGGTATTTATTT
1 ATTTTTAAAATAAATTTTTAATATTTATTT
15329357 AAAAAACGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (32 bp):
ATTTTTAAAATAAATTTTTAATATTTATTTTA
Found at i:15330870 original size:12 final size:12
Alignment explanation
Indices: 15330855--15330884 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15330845 ACAATAATAC
15330855 TATATATAAATG
1 TATATATAAATG
*
15330867 TATATATATATG
1 TATATATAAATG
15330879 TATATA
1 TATATA
15330885 ATAGAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (12 bp):
TATATATAAATG
Found at i:15330990 original size:19 final size:17
Alignment explanation
Indices: 15330966--15331012 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
15330956 AATTAAAGTA
*
15330966 ATAAAAAATAATACTATAT
1 ATAAAAAAT-ATA-TATAC
*
15330985 ATAAAATATATATATAC
1 ATAAAAAATATATATAC
15331002 AT-AAAAATATA
1 ATAAAAAATATA
15331013 CACTAATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 8 0.32
17 6 0.24
18 3 0.12
19 8 0.32
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAAAAATATATATAC
Found at i:15331008 original size:18 final size:19
Alignment explanation
Indices: 15330969--15331017 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 19
15330959 TAAAGTAATA
*
15330969 AAAAATA-ATACTATATAT
1 AAAAATATATACTATACAT
15330987 -AAAATATATA-TATACAT
1 AAAAATATATACTATACAT
*
15331004 AAAAATATACACTA
1 AAAAATATATACTA
15331018 ATATATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 12 0.46
18 12 0.46
19 2 0.08
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATATATACTATACAT
Found at i:15331243 original size:3 final size:3
Alignment explanation
Indices: 15331230--15331314 Score: 67
Period size: 3 Copynumber: 29.3 Consensus size: 3
15331220 GAGGGCATAT
*
15331230 ATA AT- ATA ATA ATA AT- ATA A-A A-A ATA ATA TATA CATA AGAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -ATA A-TA ATA
*
15331274 ATA ATA ATA AT- ATAA ATA ATA GTA A-A ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
15331315 AACAAAGCTC
Statistics
Matches: 68, Mismatches: 5, Indels: 18
0.75 0.05 0.20
Matches are distributed among these distances:
2 14 0.21
3 44 0.65
4 10 0.15
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:15331678 original size:22 final size:22
Alignment explanation
Indices: 15331642--15331733 Score: 75
Period size: 21 Copynumber: 4.2 Consensus size: 22
15331632 AACCTTTTTT
15331642 ACAAAAAAA-CACCTCCAAAAA
1 ACAAAAAAACCACCTCCAAAAA
*
15331663 ACAAAAAAACCTCCTCC--AAA
1 ACAAAAAAACCACCTCCAAAAA
**
15331683 ACAAAGAACAATCCTTCTCCAAAAA
1 ACAAA-AA-AA-CCACCTCCAAAAA
* * *
15331708 ACCAAAAACCCACCT-CTAAAA
1 ACAAAAAAACCACCTCCAAAAA
15331729 ACAAA
1 ACAAA
15331734 GTCTTGAATG
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
20 8 0.14
21 20 0.35
22 12 0.21
23 8 0.14
24 2 0.04
25 7 0.12
ACGTcount: A:0.58, C:0.32, G:0.01, T:0.10
Consensus pattern (22 bp):
ACAAAAAAACCACCTCCAAAAA
Found at i:15331853 original size:38 final size:38
Alignment explanation
Indices: 15331799--15331898 Score: 173
Period size: 38 Copynumber: 2.6 Consensus size: 38
15331789 GGTGGCCAAG
* *
15331799 GGTGGTGGAGTTGGTGGCCAAGGTGGGTGGCCAACAAC
1 GGTGGTGGAGTAGGTGGCCAAGGTGGGTGGCCAACAAA
*
15331837 GGTGGTGGAGTAGGTGGCTAAGGTGGGTGGCCAACAAA
1 GGTGGTGGAGTAGGTGGCCAAGGTGGGTGGCCAACAAA
15331875 GGTGGTGGAGTAGGTGGCCAAGGT
1 GGTGGTGGAGTAGGTGGCCAAGGT
15331899 TTTTATTTAT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 58 1.00
ACGTcount: A:0.20, C:0.12, G:0.49, T:0.19
Consensus pattern (38 bp):
GGTGGTGGAGTAGGTGGCCAAGGTGGGTGGCCAACAAA
Found at i:15332475 original size:29 final size:29
Alignment explanation
Indices: 15332409--15332476 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
15332399 AAAATTAGTT
* *
15332409 TTTTTTATTAGCATTTTTTTATTTTCATC
1 TTTTTTATTAGAATTTTTTTATTTTAATC
* **
15332438 ATTCATATTA-AATTTTTTTTATTTTAATC
1 TTTTTTATTAGAA-TTTTTTTATTTTAATC
15332467 TTTTTTATTA
1 TTTTTTATTA
15332477 TTAAAATTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.24, C:0.07, G:0.01, T:0.68
Consensus pattern (29 bp):
TTTTTTATTAGAATTTTTTTATTTTAATC
Found at i:15332796 original size:20 final size:20
Alignment explanation
Indices: 15332773--15332811 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15332763 CATTTATTAA
**
15332773 AATAATAATTTTATAAATAG
1 AATAATAATACTATAAATAG
15332793 AATAATAATACTATAAATA
1 AATAATAATACTATAAATA
15332812 AAATTGTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
AATAATAATACTATAAATAG
Found at i:15333368 original size:18 final size:18
Alignment explanation
Indices: 15333347--15333384 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
15333337 AAAAATGAAC
*
15333347 TTTTAAA-TATTTTTTATT
1 TTTTAAAGT-TTTTTAATT
15333365 TTTTAAAGTTTTTTAATT
1 TTTTAAAGTTTTTTAATT
15333383 TT
1 TT
15333385 GAACTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTTAAAGTTTTTTAATT
Found at i:15348072 original size:37 final size:37
Alignment explanation
Indices: 15347997--15348072 Score: 84
Period size: 37 Copynumber: 2.1 Consensus size: 37
15347987 AATTTTCAAT
* *
15347997 AAATAAAAAATATATAAATTTATTAAATATTAAAATA
1 AAATAAAAAATATATAAATTTATTAAAAAATAAAATA
* *
15348034 AAATAAAATAA-A-ATAAATATTTTTAAAAAATAATATA
1 AAATAAAA-AATATATAAAT-TTATTAAAAAATAAAATA
15348071 AA
1 AA
15348073 CGAACCTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
36 6 0.18
37 25 0.76
38 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (37 bp):
AAATAAAAAATATATAAATTTATTAAAAAATAAAATA
Found at i:15354502 original size:125 final size:125
Alignment explanation
Indices: 15354278--15354594 Score: 553
Period size: 125 Copynumber: 2.5 Consensus size: 125
15354268 GATAAAATCA
* * * *
15354278 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAGTTGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCTCGTAGACGCGCTTTTGCTACAGT
* *
15354343 AGGTCCTTGAAAAATAATTTCGAGTTGACCTTTCTGAGCAAATAGTATAAAAAACGCTTC
66 AGGTCCTGGAAAAATAATTTCGAGTTGACCTTTCTAAGCAAATAGTATAAAAAACGCTTC
* *
15354403 AAGCATGATGCTTTATCAGAAGAATTTCTGAAATCGAGCCCTCGTAGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCTCGTAGACGCGCTTTTGCTACAGT
*
15354468 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTAAGCAAATAGTATAAAAAACGCTTC
66 AGGTCCTGGAAAAATAATTTCGAGTTGACCTTTCTAAGCAAATAGTATAAAAAACGCTTC
15354528 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCTCGTAGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCTCGTAGACGCGCTTTTGCTACAGT
15354593 AG
66 AG
15354595 TATGTTTGGG
Statistics
Matches: 181, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
125 181 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (125 bp):
AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCTCGTAGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGAGTTGACCTTTCTAAGCAAATAGTATAAAAAACGCTTC
Found at i:15357617 original size:19 final size:18
Alignment explanation
Indices: 15357593--15357723 Score: 55
Period size: 16 Copynumber: 7.3 Consensus size: 18
15357583 ATCTAATATT
15357593 TTGTTAGTAAAATTATTAA
1 TTGTTA-TAAAATTATTAA
15357612 TTG-T-T--AATTGCATTAA
1 TTGTTATAAAATT--ATTAA
* *
15357628 TTGTTAGTAAATTTATCAAA
1 TTGTTA-TAAAATTAT-TAA
* *
15357648 TT-ATATCAAATTATTAA
1 TTGTTATAAAATTATTAA
*
15357665 TTG-T-T-AATTGTATTAA
1 TTGTTATAAAAT-TATTAA
*
15357681 TTGTTAGTAAAATTATCAAA
1 TTGTTA-TAAAATTAT-TAA
* *
15357701 TT-ATATCAAATTATTAA
1 TTGTTATAAAATTATTAA
15357718 TTGTTA
1 TTGTTA
15357724 GTACCAGTCA
Statistics
Matches: 83, Mismatches: 13, Indels: 33
0.64 0.10 0.26
Matches are distributed among these distances:
14 4 0.05
15 3 0.04
16 19 0.23
17 11 0.13
18 18 0.22
19 14 0.17
20 11 0.13
21 3 0.04
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (18 bp):
TTGTTATAAAATTATTAA
Found at i:15357661 original size:53 final size:53
Alignment explanation
Indices: 15357602--15357723 Score: 226
Period size: 53 Copynumber: 2.3 Consensus size: 53
15357592 TTTGTTAGTA
*
15357602 AAATTATTAATTGTTAATTGCATTAATTGTTAGTAAATTTATCAAATTATATC
1 AAATTATTAATTGTTAATTGCATTAATTGTTAGTAAAATTATCAAATTATATC
*
15357655 AAATTATTAATTGTTAATTGTATTAATTGTTAGTAAAATTATCAAATTATATC
1 AAATTATTAATTGTTAATTGCATTAATTGTTAGTAAAATTATCAAATTATATC
15357708 AAATTATTAATTGTTA
1 AAATTATTAATTGTTA
15357724 GTACCAGTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
53 67 1.00
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (53 bp):
AAATTATTAATTGTTAATTGCATTAATTGTTAGTAAAATTATCAAATTATATC
Found at i:15357792 original size:16 final size:15
Alignment explanation
Indices: 15357767--15357798 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
15357757 TTTGTTATTC
15357767 AATTTATTAATTGTT
1 AATTTATTAATTGTT
15357782 AATTATATTAATTGTT
1 AATT-TATTAATTGTT
15357798 A
1 A
15357799 GTAAATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (15 bp):
AATTTATTAATTGTT
Found at i:15357926 original size:22 final size:21
Alignment explanation
Indices: 15357895--15358055 Score: 241
Period size: 21 Copynumber: 7.5 Consensus size: 21
15357885 AGGGTTATGT
15357895 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
15357916 TTAGGGTTTTTAAGTTAAGTG
1 TTAGGGTTTTTAAGTTAAGGG
*
15357937 TTAGGGTTTTTAAGTTAAAGGT
1 TTAGGGTTTTTAAGTT-AAGGG
* *
15357959 TTAAGGTTTTTAAGTTGAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
15357980 TTAGGGTTTTTAAGTTAAGGAT
1 TTAGGGTTTTTAAGTTAAGG-G
15358002 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
15358023 TTTATGGTTTTTAAGTTAAGGG
1 -TTAGGGTTTTTAAGTTAAGGG
15358045 TTAGGGTTTTT
1 TTAGGGTTTTT
15358056 GTTAGGGTTT
Statistics
Matches: 125, Mismatches: 12, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
21 67 0.54
22 58 0.46
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.47
Consensus pattern (21 bp):
TTAGGGTTTTTAAGTTAAGGG
Found at i:15357968 original size:43 final size:42
Alignment explanation
Indices: 15357895--15358055 Score: 241
Period size: 43 Copynumber: 3.8 Consensus size: 42
15357885 AGGGTTATGT
*
15357895 TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGTG
1 TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG
* * *
15357937 TTAGGGTTTTTAAGTTAAAGGTTTAAGGTTTTTAAGTTGAGGG
1 TTAGGGTTTTTAAGTT-AAGGGTTAGGGTTTTTAAGTTAAGGG
*
15357980 TTAGGGTTTTTAAGTTAAGGATTTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGG-GTTAGGGTTTTTAAGTTAAGGG
*
15358023 TTTATGGTTTTTAAGTTAAGGGTTAGGGTTTTT
1 -TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTT
15358056 GTTAGGGTTT
Statistics
Matches: 108, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
42 20 0.19
43 69 0.64
44 19 0.18
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.47
Consensus pattern (42 bp):
TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG
Found at i:15358084 original size:12 final size:12
Alignment explanation
Indices: 15358069--15358093 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15358059 AGGGTTTGTC
15358069 AATTAAATTATA
1 AATTAAATTATA
15358081 AATTAAATTATA
1 AATTAAATTATA
15358093 A
1 A
15358094 TTTATAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AATTAAATTATA
Found at i:15358349 original size:21 final size:21
Alignment explanation
Indices: 15358325--15358364 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15358315 TTGTGGTTGC
15358325 TCCGGT-GGGAATTCTGGTTCT
1 TCCGGTAGGGAA-TCTGGTTCT
*
15358346 TCCGGTAGGGCATCTGGTT
1 TCCGGTAGGGAATCTGGTT
15358365 GTCGGTGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.10, C:0.20, G:0.35, T:0.35
Consensus pattern (21 bp):
TCCGGTAGGGAATCTGGTTCT
Found at i:15360504 original size:29 final size:28
Alignment explanation
Indices: 15360471--15360527 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
15360461 GGATTTAAGA
*
15360471 GAAATTTAAGAGGAAATTGAGAGCAAATT
1 GAAATTAAAGAGGAAATTGAGAG-AAATT
* * *
15360500 GAAATTAAATATGAATTTGAGAGAAATT
1 GAAATTAAAGAGGAAATTGAGAGAAATT
15360528 TGGAAGGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.49, C:0.02, G:0.21, T:0.28
Consensus pattern (28 bp):
GAAATTAAAGAGGAAATTGAGAGAAATT
Found at i:15361698 original size:29 final size:30
Alignment explanation
Indices: 15361656--15361712 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
15361646 AGGTTGGGAG
*
15361656 GGGAGAGGAATAAAAGTTTTGGGGGAAAGT
1 GGGAGAGGAATAAAAGTTTTGAGGGAAAGT
*
15361686 GGGA-AGGAGTAAAAGTTTTGAGGGAAA
1 GGGAGAGGAATAAAAGTTTTGAGGGAAA
15361713 AGTAAAAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.39, C:0.00, G:0.42, T:0.19
Consensus pattern (30 bp):
GGGAGAGGAATAAAAGTTTTGAGGGAAAGT
Found at i:15367584 original size:22 final size:22
Alignment explanation
Indices: 15367555--15367602 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
15367545 AGTTCATGCG
15367555 TATT-TCATTTTTCATA-ATTCT
1 TATTATCATTTTTCATATATT-T
*
15367576 TATTATCATTTTTTATATATTT
1 TATTATCATTTTTCATATATTT
15367598 TATTA
1 TATTA
15367603 AGTTTTTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 17 0.71
23 3 0.12
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (22 bp):
TATTATCATTTTTCATATATTT
Found at i:15368421 original size:17 final size:17
Alignment explanation
Indices: 15368401--15368437 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
15368391 AATTTTTGAA
15368401 TTAGTGAATTTTGCGAT
1 TTAGTGAATTTTGCGAT
*
15368418 TTAGTGAATTTTGTGAT
1 TTAGTGAATTTTGCGAT
15368435 TTA
1 TTA
15368438 AAAAGAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.03, G:0.22, T:0.51
Consensus pattern (17 bp):
TTAGTGAATTTTGCGAT
Found at i:15369242 original size:46 final size:46
Alignment explanation
Indices: 15369175--15369360 Score: 264
Period size: 46 Copynumber: 4.0 Consensus size: 46
15369165 CCATGGAAAA
*
15369175 TTGTGAAAAGTAGGTATGGTGTTTCAGTAAAGAAAGCCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTAAAGAAAACCATACTGAG
* *
15369221 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAATAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTAAAGAAAACCATACTGAG
* * * *
15369267 TTGTGAAAAGTAAGTATGGTGTTTTAGTGAAGAAAATCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTAAAGAAAACCATACTGAG
* * * * *
15369313 TTGTGAAAAGTAGGTATGGTATTTTAATGAAGGAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTAAAGAAAACCATACTGAG
15369359 TT
1 TT
15369361 ATAGCATTGT
Statistics
Matches: 128, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 128 1.00
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.31
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGGTGTTTCAGTAAAGAAAACCATACTGAG
Found at i:15372091 original size:43 final size:44
Alignment explanation
Indices: 15372024--15372228 Score: 308
Period size: 43 Copynumber: 4.6 Consensus size: 44
15372014 TTTGAGTACT
15372024 TCTGATCAAGTGACAAAGTGATAAGTGATAGC-TTAGCTACACTTA
1 TCTGATCAAG-GAC-AAGTGATAAGTGATAGCTTTAGCTACACTTA
* *
15372069 TCTGATCAAGAACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGGACAAGTGATAAGTGATAGCTTTAGCTACACTTA
15372113 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAG-GAC-AAGTGATAAGTGATAGCTTTAGCTACACTTA
* *
15372159 TCTGGTC-AGGAACAAGTGATAAGTGATAGC-CTAGCTACACTTA
1 TCTGATCAAGG-ACAAGTGATAAGTGATAGCTTTAGCTACACTTA
15372202 TCTGATCAAGGACAAGTGATAAGTGAT
1 TCTGATCAAGGACAAGTGATAAGTGAT
15372229 CATACGTAAG
Statistics
Matches: 148, Mismatches: 7, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
43 50 0.34
44 46 0.31
45 16 0.11
46 36 0.24
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (44 bp):
TCTGATCAAGGACAAGTGATAAGTGATAGCTTTAGCTACACTTA
Found at i:15372194 original size:89 final size:89
Alignment explanation
Indices: 15372024--15372228 Score: 344
Period size: 89 Copynumber: 2.3 Consensus size: 89
15372014 TTTGAGTACT
15372024 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAACAAGTGAT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAACAAGTGAT
* *
15372089 AAGTGGTAGCTTTAGCTACACTTA
66 AAGTGATAGCTCTAGCTACACTTA
* *
15372113 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGGTCAGGAACAAGTGA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGC-TTAGCTACACTTATCTGATCAAGAACAAGTGA
15372178 TAAGTGATAGC-CTAGCTACACTTA
65 TAAGTGATAGCTCTAGCTACACTTA
15372202 TCTGATCAAG-GAC-AAGTGATAAGTGAT
1 TCTGATCAAGTGACAAAGTGATAAGTGAT
15372229 CATACGTAAG
Statistics
Matches: 111, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
87 14 0.13
88 3 0.03
89 54 0.49
90 40 0.36
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (89 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAACAAGTGAT
AAGTGATAGCTCTAGCTACACTTA
Found at i:15376686 original size:46 final size:46
Alignment explanation
Indices: 15376583--15376740 Score: 259
Period size: 46 Copynumber: 3.5 Consensus size: 46
15376573 TACATATGAT
* *
15376583 CACTTATCACTTT-TC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
15376626 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
15376672 CACTTATCACTTTGTCACTTGATCATATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
15376718 CACTTATCACTTTATCACTTGAT
1 CACTTATCACTTTGTCACTTGAT
15376741 TAGAAGTACT
Statistics
Matches: 108, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
43 13 0.12
44 2 0.02
45 20 0.19
46 73 0.68
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:15389678 original size:21 final size:21
Alignment explanation
Indices: 15389652--15389692 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15389642 TGGATTGGAG
*
15389652 GATAAGTATCATTCCTTTTGT
1 GATAAGGATCATTCCTTTTGT
* *
15389673 GATAAGGATGATTTCTTTTG
1 GATAAGGATCATTCCTTTTG
15389693 GTATTATTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.10, G:0.20, T:0.46
Consensus pattern (21 bp):
GATAAGGATCATTCCTTTTGT
Found at i:15402859 original size:25 final size:23
Alignment explanation
Indices: 15402831--15402877 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
15402821 AAATTCATTA
15402831 AAATTATATATAAATATATCAAATT
1 AAATTATA-ATAAAT-TATCAAATT
*
15402856 AAATTATAATAAATTATTAAAT
1 AAATTATAATAAATTATCAAAT
15402878 GTTTGCTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 6 0.29
25 8 0.38
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
AAATTATAATAAATTATCAAATT
Found at i:15402980 original size:23 final size:24
Alignment explanation
Indices: 15402930--15402981 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
15402920 AATATAAATC
*
15402930 TTAAA-TGTTTTTAAAACATTAAT
1 TTAAATTGTTCTTAAAACATTAAT
* *
15402953 ATAAATTGTTCTTAAAA-TTTAAT
1 TTAAATTGTTCTTAAAACATTAAT
15402976 TTAAAT
1 TTAAAT
15402982 ATATAAATCA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 14 0.58
24 10 0.42
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (24 bp):
TTAAATTGTTCTTAAAACATTAAT
Found at i:15407396 original size:19 final size:20
Alignment explanation
Indices: 15407360--15407397 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
15407350 AGTCTTGTTT
* *
15407360 TATTATTTTAATTTGATTTG
1 TATTATTTTAAGTAGATTTG
15407380 TATT-TTTTAAGTAGATTT
1 TATTATTTTAAGTAGATTT
15407398 AAATTATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (20 bp):
TATTATTTTAAGTAGATTTG
Found at i:15418984 original size:24 final size:21
Alignment explanation
Indices: 15418931--15418986 Score: 69
Period size: 20 Copynumber: 2.6 Consensus size: 21
15418921 AATGGTGATT
15418931 AAGTTTAATTAATTAAGGTTA
1 AAGTTTAATTAATTAAGGTTA
*
15418952 AA-TTAAATTAATTAAGGAATTAA
1 AAGTTTAATTAATTAAGG--TT-A
15418975 AAGTTTAATTAA
1 AAGTTTAATTAA
15418987 AGTATATAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 14 0.48
21 2 0.07
22 2 0.07
23 3 0.10
24 8 0.28
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (21 bp):
AAGTTTAATTAATTAAGGTTA
Found at i:15421584 original size:32 final size:32
Alignment explanation
Indices: 15421547--15421610 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
15421537 TTCCCAATTC
15421547 AGAGAGCACACTCCCACGAACCTCATTTCTTA
1 AGAGAGCACACTCCCACGAACCTCATTTCTTA
*
15421579 AGAGAGCACACTCCCGCGAACCTCATTTCTTA
1 AGAGAGCACACTCCCACGAACCTCATTTCTTA
15421611 CAGTGGGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.22
Consensus pattern (32 bp):
AGAGAGCACACTCCCACGAACCTCATTTCTTA
Found at i:15421804 original size:57 final size:57
Alignment explanation
Indices: 15421716--15421824 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 57
15421706 AATTCGGATT
*
15421716 ACCCGTCCGGGCTAAATCCATTTTCCACATATTCTTCGGG-AGGACTATATCAAGATC
1 ACCCGTCCGGGCTAAATCCATTTTCCACATATTATTCGGGAAGG-CTATATCAAGATC
* *
15421773 ACCCGTCCGGGCTAGAT-CTTTTTCACACATATTATTCGGGAAGGCTATATCA
1 ACCCGTCCGGGCTAAATCCATTTTC-CACATATTATTCGGGAAGGCTATATCA
15421825 GGATAGGATC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
56 6 0.13
57 38 0.81
58 3 0.06
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (57 bp):
ACCCGTCCGGGCTAAATCCATTTTCCACATATTATTCGGGAAGGCTATATCAAGATC
Found at i:15423648 original size:31 final size:30
Alignment explanation
Indices: 15423610--15423668 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
15423600 CACCCTTAAA
* * *
15423610 ATATTTACACTATTGACCCTTCAACTTTTTC
1 ATATTTACACT-TTAACCCCTCAAATTTTTC
15423641 ATATTTACACTTTAACCCCTCAAATTTT
1 ATATTTACACTTTAACCCCTCAAATTTT
15423669 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.29, C:0.25, G:0.02, T:0.44
Consensus pattern (30 bp):
ATATTTACACTTTAACCCCTCAAATTTTTC
Found at i:15423678 original size:30 final size:31
Alignment explanation
Indices: 15423610--15423678 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
15423600 CACCCTTAAA
* * *
15423610 ATATTTACACTATTGACCCTTCAACTTTTTC
1 ATATTTACACTATTAACCCCTCAACATTTTC
*
15423641 ATATTTACACT-TTAACCCCTCAA-ATTTTG
1 ATATTTACACTATTAACCCCTCAACATTTTC
15423670 AGTATTTAC
1 A-TATTTAC
15423679 TCTTGGGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 5 0.15
30 17 0.52
31 11 0.33
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.43
Consensus pattern (31 bp):
ATATTTACACTATTAACCCCTCAACATTTTC
Found at i:15424734 original size:5 final size:5
Alignment explanation
Indices: 15424724--15424790 Score: 61
Period size: 5 Copynumber: 13.6 Consensus size: 5
15424714 TAAAAAATAT
* *
15424724 TATTA TATTA TAGTAA TGATTA TGTT- T-TTA TATTA TA-T- TATTA TTATTA
1 TATTA TATTA TA-TTA T-ATTA TATTA TATTA TATTA TATTA TATTA -TATTA
15424773 TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TAT
15424791 ATACATAAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
3 4 0.08
4 4 0.08
5 32 0.62
6 11 0.21
7 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:15424793 original size:19 final size:19
Alignment explanation
Indices: 15424720--15424792 Score: 75
Period size: 19 Copynumber: 3.9 Consensus size: 19
15424710 GTGTTAAAAA
*
15424720 ATATTATTA-TATTATAGTA
1 ATATTATTATTATTATA-TT
15424739 ATGATTATGT-TT-TTATATT
1 AT-ATTAT-TATTATTATATT
15424758 ATATTATTATTATTATATT
1 ATATTATTATTATTATATT
15424777 ATATTA-TATTA-TATAT
1 ATATTATTATTATTATAT
15424793 ACATAAAACA
Statistics
Matches: 48, Mismatches: 1, Indels: 12
0.79 0.02 0.20
Matches are distributed among these distances:
17 6 0.12
18 12 0.25
19 18 0.38
20 10 0.21
21 2 0.04
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (19 bp):
ATATTATTATTATTATATT
Found at i:15424821 original size:14 final size:14
Alignment explanation
Indices: 15424797--15424842 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
15424787 ATATATACAT
*
15424797 AAAACAAAAGAAAG
1 AAAAGAAAAGAAAG
*
15424811 AATAGAAAAGAAAG
1 AAAAGAAAAGAAAG
15424825 AAAAGAAACAGAATAG
1 AAAAGAAA-AGAA-AG
15424841 AA
1 AA
15424843 GAGACGAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 19 0.70
15 4 0.15
16 4 0.15
ACGTcount: A:0.74, C:0.04, G:0.17, T:0.04
Consensus pattern (14 bp):
AAAAGAAAAGAAAG
Found at i:15424862 original size:25 final size:25
Alignment explanation
Indices: 15424805--15424862 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
15424795 ATAAAACAAA
15424805 AGAAAGAATAGAAAAGAAAGAAAAG
1 AGAAAGAATAGAAAAGAAAGAAAAG
* *
15424830 A-AACAGAATAGAAGAG-ACGAAACAG
1 AGAA-AGAATAGAAAAGAAAGAAA-AG
15424855 AGAAAGAA
1 AGAAAGAA
15424863 ACAGAGAGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
24 7 0.25
25 19 0.68
26 2 0.07
ACGTcount: A:0.67, C:0.05, G:0.24, T:0.03
Consensus pattern (25 bp):
AGAAAGAATAGAAAAGAAAGAAAAG
Found at i:15425130 original size:13 final size:13
Alignment explanation
Indices: 15425112--15425143 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
15425102 TTTTCAGCAA
15425112 TTATGAATTTATT
1 TTATGAATTTATT
15425125 TTATGAATTTATT
1 TTATGAATTTATT
*
15425138 TGATGA
1 TTATGA
15425144 TGATCTAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:15425351 original size:50 final size:50
Alignment explanation
Indices: 15425238--15425479 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
15425228 ATTTGGGTAA
* * *
15425238 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
15425294 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
15425344 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
15425394 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
15425444 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
15425480 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:15425427 original size:100 final size:103
Alignment explanation
Indices: 15425238--15425487 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
15425228 ATTTGGGTAA
15425238 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
15425303 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
15425344 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
15425406 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
15425444 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
15425488 GTTATCATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:15427947 original size:13 final size:13
Alignment explanation
Indices: 15427929--15427956 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
15427919 TGATCTCTTC
15427929 TGGGTATTCTATA
1 TGGGTATTCTATA
15427942 TGGGTATTCTATA
1 TGGGTATTCTATA
15427955 TG
1 TG
15427957 CTCTTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (13 bp):
TGGGTATTCTATA
Found at i:15429850 original size:5 final size:5
Alignment explanation
Indices: 15429840--15429905 Score: 55
Period size: 5 Copynumber: 12.6 Consensus size: 5
15429830 TAAAAAATAT
* *
15429840 TATTA TATTA TAGTAA TGATTA TGTTTTA TATTA TATTA TTATTA -A-TA
1 TATTA TATTA TA-TTA T-ATTA T-ATT-A TATTA TATTA -TATTA TATTA
15429888 TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TAT
15429906 ATACATAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
3 2 0.04
4 2 0.04
5 28 0.55
6 16 0.31
7 3 0.06
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.58
Consensus pattern (5 bp):
TATTA
Found at i:15429889 original size:19 final size:17
Alignment explanation
Indices: 15429840--15429907 Score: 68
Period size: 17 Copynumber: 3.9 Consensus size: 17
15429830 TAAAAAATAT
15429840 TATTATATTATAGTA--A
1 TATTATATTATA-TATTA
* *
15429856 TGATTATGTTTTATATTA
1 T-ATTATATTATATATTA
15429874 TATTATTATTAATATATTA
1 TATTA-TATT-ATATATTA
15429893 TATTATATTATATAT
1 TATTATATTATATAT
15429908 ACATAAAACA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
16 3 0.07
17 19 0.44
18 9 0.21
19 12 0.28
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (17 bp):
TATTATATTATATATTA
Found at i:15429893 original size:24 final size:24
Alignment explanation
Indices: 15429835--15429903 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
15429825 TGTGTTAAAA
*
15429835 AATATTATTATATTATAGTAATGATT
1 AATA-TATTATATTATA-TTATGATT
* * *
15429861 -ATGTTTTATATTATATTATTATT
1 AATATATTATATTATATTATGATT
15429884 AATATATTATATTATATTAT
1 AATATATTATATTATATTAT
15429904 ATATACATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
23 6 0.17
24 28 0.78
25 2 0.06
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (24 bp):
AATATATTATATTATATTATGATT
Found at i:15429908 original size:19 final size:19
Alignment explanation
Indices: 15429867--15429907 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
15429857 GATTATGTTT
15429867 TATATTATATTATTATTAA
1 TATATTATATTATTATTAA
15429886 TATATTATATTA-TATT-A
1 TATATTATATTATTATTAA
15429903 TATAT
1 TATAT
15429908 ACATAAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 6 0.27
18 4 0.18
19 12 0.55
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TATATTATATTATTATTAA
Found at i:15430245 original size:13 final size:13
Alignment explanation
Indices: 15430227--15430258 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
15430217 TTTCCAGCAA
15430227 TTATGAATTTATT
1 TTATGAATTTATT
15430240 TTATGAATTTATT
1 TTATGAATTTATT
*
15430253 TGATGA
1 TTATGA
15430259 TGATCTAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:15430466 original size:50 final size:50
Alignment explanation
Indices: 15430353--15430594 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
15430343 ATTTGGGTAA
* * *
15430353 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
15430409 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
15430459 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
15430509 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
15430559 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
15430595 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:15430542 original size:100 final size:103
Alignment explanation
Indices: 15430353--15430602 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
15430343 ATTTGGGTAA
15430353 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
15430418 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
15430459 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
15430521 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
15430559 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
15430603 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:15432643 original size:31 final size:31
Alignment explanation
Indices: 15432608--15432712 Score: 92
Period size: 31 Copynumber: 3.4 Consensus size: 31
15432598 TATTATCATC
15432608 GAATGTATATACACTTTAAACATGAATAGCT
1 GAATGTATATACACTTTAAACATGAATAGCT
* * *
15432639 GAATGCT-TATACAC-ATAACAAAT-ATTATCA-CC
1 GAATG-TATATACACTTTAA-ACATGA--AT-AGCT
*
15432671 GAATGTATATACACTTTAAACATGAATAGTT
1 GAATGTATATACACTTTAAACATGAATAGCT
*
15432702 GAATGCATATA
1 GAATGTATATA
15432713 TACATATGCC
Statistics
Matches: 57, Mismatches: 8, Indels: 18
0.69 0.10 0.22
Matches are distributed among these distances:
30 5 0.09
31 28 0.49
32 19 0.33
33 5 0.09
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.31
Consensus pattern (31 bp):
GAATGTATATACACTTTAAACATGAATAGCT
Found at i:15432682 original size:32 final size:33
Alignment explanation
Indices: 15432591--15432685 Score: 85
Period size: 32 Copynumber: 3.0 Consensus size: 33
15432581 CATATATGCT
* *
15432591 TAACAAATATTATCATCGAATGTATATACACTT
1 TAACAAATATTATCACCGAATGTATATACACTA
* *
15432624 TAA-ACATGA--AT-AGCTGAATGCT-TATACAC-A
1 TAACAAAT-ATTATCA-CCGAATG-TATATACACTA
15432654 TAACAAATATTATCACCGAATGTATATACACT
1 TAACAAATATTATCACCGAATGTATATACACT
15432686 TTAAACATGA
Statistics
Matches: 47, Mismatches: 6, Indels: 18
0.66 0.08 0.25
Matches are distributed among these distances:
30 5 0.11
31 18 0.38
32 19 0.40
33 5 0.11
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (33 bp):
TAACAAATATTATCACCGAATGTATATACACTA
Done.