Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 56 of 208
Found at i:21662075 original size:15 final size:16
Alignment explanation
Indices: 21662049--21662085 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
21662039 TTTAATTTTC
21662049 AAAATTTCAAAAAAAA
1 AAAATTTCAAAAAAAA
*
21662065 AAAATTT-AAAAAATA
1 AAAATTTCAAAAAAAA
21662080 AAAATT
1 AAAATT
21662086 GCATTTTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAATTTCAAAAAAAA
Found at i:21662121 original size:30 final size:29
Alignment explanation
Indices: 21662081--21662196 Score: 117
Period size: 30 Copynumber: 3.9 Consensus size: 29
21662071 TAAAAAATAA
* *
21662081 AAATTGCATTTTGACACCTAAACTTTTC-CT
1 AAATTTCATTTTGAC-CCTAAAC-TTTCATT
*
21662111 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCC-TAAACTTTCATT
* *
21662141 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGA-CCCTAAACTTTCATT
* * *
21662171 AAATTTCATTTTAATCCTAAATTTTC
1 AAATTTCATTTTGACCCTAAACTTTC
21662197 TAAAAATTAC
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
29 16 0.22
30 54 0.74
31 3 0.04
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.44
Consensus pattern (29 bp):
AAATTTCATTTTGACCCTAAACTTTCATT
Found at i:21662461 original size:10 final size:10
Alignment explanation
Indices: 21662442--21662491 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
21662432 TTTTTCGAAG
*
21662442 GAAAAAAGAA
1 GAAAAGAGAA
21662452 GAAAAGAGAA
1 GAAAAGAGAA
21662462 GAAAAGAGAA
1 GAAAAGAGAA
* *
21662472 -AGAGGAGAA
1 GAAAAGAGAA
21662481 GAAAAGA-AA
1 GAAAAGAGAA
21662490 GA
1 GA
21662492 GTACCGGCGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAGAGAA
Found at i:21662492 original size:17 final size:19
Alignment explanation
Indices: 21662445--21662487 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
21662435 TTCGAAGGAA
21662445 AAAAGAAGAAA-A-GAGAAG
1 AAAAG-AGAAAGAGGAGAAG
21662463 AAAAGAGAAAGAGGAGAAG
1 AAAAGAGAAAGAGGAGAAG
21662482 AAAAGA
1 AAAAGA
21662488 AAGAGTACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 6 0.26
19 12 0.52
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAGAGAAAGAGGAGAAG
Found at i:21662553 original size:3 final size:3
Alignment explanation
Indices: 21662547--21662592 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
21662537 GCTAGACTTT
*
21662547 GAA GAA GAA GAA GGAA GAA GAA GGAA GAA GAA -AA GAG GAA GAA GAA
1 GAA GAA GAA GAA -GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA
21662593 AGAAAGAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:21662565 original size:10 final size:10
Alignment explanation
Indices: 21662550--21662578 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
21662540 AGACTTTGAA
21662550 GAAGAAGAAG
1 GAAGAAGAAG
21662560 GAAGAAGAAG
1 GAAGAAGAAG
21662570 GAAGAAGAA
1 GAAGAAGAA
21662579 AAGAGGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:21662565 original size:13 final size:13
Alignment explanation
Indices: 21662547--21662592 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
21662537 GCTAGACTTT
21662547 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
21662560 GAAGAAGAAGGAA-
1 GAAGAAGAA-GAAG
21662573 GAAGAA-AAG-AG
1 GAAGAAGAAGAAG
21662584 GAAGAAGAA
1 GAAGAAGAA
21662593 AGAAAGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 7 0.23
12 4 0.13
13 15 0.50
14 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:21662604 original size:24 final size:24
Alignment explanation
Indices: 21662547--21662605 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 24
21662537 GCTAGACTTT
*
21662547 GAAGAAGAAGAAGGAAGAAGAAGGAA
1 GAAGAA-AAG-AGGAAGAAGAAGAAA
21662573 GAAGAAAAGAGGAAGAAGAAAGAAA
1 GAAGAAAAGAGGAAGAAG-AAGAAA
*
21662598 GAAAAAAA
1 GAAGAAAA
21662606 AAGAAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 9 0.30
25 15 0.50
26 6 0.20
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (24 bp):
GAAGAAAAGAGGAAGAAGAAGAAA
Found at i:21662904 original size:23 final size:22
Alignment explanation
Indices: 21662878--21662955 Score: 79
Period size: 23 Copynumber: 3.5 Consensus size: 22
21662868 GCAGCCCAGC
21662878 AGAAAAAAAAAGGAAGAAAAAGA
1 AGAAAAAAAAA-GAAGAAAAAGA
*
21662901 AGAAAAAAGAAAAAAGAAAAAAGA
1 AGAAAAAA-AAAGAAG-AAAAAGA
*
21662925 A-AAAAAGAAAAAAAGAAAAA-A
1 AGAAAAA-AAAAGAAGAAAAAGA
*
21662946 AGAAGAAAAA
1 AGAAAAAAAA
21662956 GGGGGTTCAA
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
21 5 0.10
22 9 0.18
23 23 0.47
24 12 0.24
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (22 bp):
AGAAAAAAAAAGAAGAAAAAGA
Found at i:21662912 original size:7 final size:7
Alignment explanation
Indices: 21662895--21662945 Score: 75
Period size: 7 Copynumber: 6.9 Consensus size: 7
21662885 AAAAGGAAGA
21662895 AAAAGAAG
1 AAAA-AAG
21662903 AAAAAAG
1 AAAAAAG
21662910 AAAAAAG
1 AAAAAAG
21662917 AAAAAAG
1 AAAAAAG
21662924 AAAAAAAG
1 -AAAAAAG
21662932 AAAAAAAG
1 -AAAAAAG
21662940 AAAAAA
1 AAAAAA
21662946 AGAAGAAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
7 23 0.55
8 19 0.45
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:21662912 original size:16 final size:15
Alignment explanation
Indices: 21662878--21662954 Score: 95
Period size: 16 Copynumber: 5.1 Consensus size: 15
21662868 GCAGCCCAGC
**
21662878 AGAAAAAAA-AAGGA
1 AGAAAAAAAGAAAAA
21662892 AGAAAAAGAAGAAAAA
1 AGAAAAA-AAGAAAAA
21662908 AG-AAAAAAGAAAAA
1 AGAAAAAAAGAAAAA
21662922 AGAAAAAAAGAAAAAA
1 AGAAAAAAAG-AAAAA
21662938 AGAAAAAAAGAAGAAA
1 AGAAAAAAAGAA-AAA
21662954 A
1 A
21662955 AGGGGGTTCA
Statistics
Matches: 56, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
14 17 0.30
15 15 0.27
16 24 0.43
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AGAAAAAAAGAAAAA
Found at i:21662914 original size:8 final size:8
Alignment explanation
Indices: 21662891--21662956 Score: 93
Period size: 8 Copynumber: 8.4 Consensus size: 8
21662881 AAAAAAAAGG
21662891 AAGAAAAA
1 AAGAAAAA
21662899 GAAG-AAAA
1 -AAGAAAAA
21662907 AAG-AAAA
1 AAGAAAAA
21662914 AAG-AAAA
1 AAGAAAAA
21662921 AAGAAAAA
1 AAGAAAAA
21662929 AAGAAAAA
1 AAGAAAAA
21662937 AAGAAAAA
1 AAGAAAAA
21662945 AAGAAGAAA
1 AAGAA-AAA
21662954 AAG
1 AAG
21662957 GGGGTTCAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
7 17 0.31
8 29 0.53
9 9 0.16
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (8 bp):
AAGAAAAA
Found at i:21663521 original size:18 final size:19
Alignment explanation
Indices: 21663496--21663551 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 19
21663486 GAAATTTTCG
**
21663496 AATTTTCGCGTTT-TCAAA
1 AATTTTCGCGTTTGAAAAA
* *
21663514 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTGAAAAA
21663533 AATTTTCGCGTTT-AAAAA
1 AATTTTCGCGTTTGAAAAA
21663551 A
1 A
21663552 TTTCTCGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
18 17 0.55
19 14 0.45
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (19 bp):
AATTTTCGCGTTTGAAAAA
Found at i:21663569 original size:37 final size:37
Alignment explanation
Indices: 21663496--21663569 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
21663486 GAAATTTTCG
* * * *
21663496 AATTTTCGCGTTTTCAAAAGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
21663533 AATTTTCGCG-TTTAAAAAATTTCTCGTATTTCAAAAA
1 AATTTTCGCGTTTTAAAAAATTT-TCGTATTTCAAAAA
21663570 TTGTCGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (37 bp):
AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
Found at i:21663670 original size:16 final size:16
Alignment explanation
Indices: 21663619--21663672 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
21663609 CGTGCTTTTA
21663619 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
21663635 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
21663653 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
21663669 AAAA
1 AAAA
21663673 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:21663688 original size:18 final size:18
Alignment explanation
Indices: 21663496--21663941 Score: 152
Period size: 17 Copynumber: 25.1 Consensus size: 18
21663486 GAAATTTTCG
*
21663496 AATTTTCGCGTTTTCAAA
1 AATTTTCGTGTTTTCAAA
* **
21663514 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGTGTTT-TCAAA
* *
21663533 AATTTTCGCG-TTTAAAA
1 AATTTTCGTGTTTTCAAA
*
21663550 AATTTCTCGT-ATTTCAAA
1 AATTT-TCGTGTTTTCAAA
* * *
21663568 AATTGTCGT-TTTTTATA
1 AATTTTCGTGTTTTCAAA
* * *
21663585 AATCTTCGTGCTTTCAAT
1 AATTTTCGTGTTTTCAAA
**
21663603 AATCCTCGTGCTTTT-AAA
1 AATTTTCGTG-TTTTCAAA
* *
21663621 AATTCTCATG-TTTCAAA
1 AATTTTCGTGTTTTCAAA
*
21663638 AATCTTCGTGTTTTC-AA
1 AATTTTCGTGTTTTCAAA
* *
21663655 AATTCTAGTG-TTTCAAA
1 AATTTTCGTGTTTTCAAA
*
21663672 AATTTTCTTGTTTTCAAAAAAA
1 AATTTTCGTGTTTTC----AAA
* *
21663694 AAATTTCGTGTTTTAAAAAA
1 AATTTTCGTGTTTT--CAAA
21663714 AATATTTCCGTGTTTT-AAA
1 AAT-TTT-CGTGTTTTCAAA
21663733 AATTTTCGTGTTTT-AAA
1 AATTTTCGTGTTTTCAAA
*
21663750 AATTCTC-T-TATTT--AA
1 AATTTTCGTGT-TTTCAAA
*
21663765 AATTTT--T-TTTTAAGAAA
1 AATTTTCGTGTTTT--CAAA
*
21663782 AAATTT--TG-TTTCAAAA
1 AATTTTCGTGTTTTC-AAA
* * *
21663798 AAATGTCTTGTTTT-AAA
1 AATTTTCGTGTTTTCAAA
**
21663815 AATTCCCGTG-TTTCAAAAA
1 AATTTTCGTGTTTTC--AAA
* *
21663834 AAATGTCGTGTTTT-AAGA
1 AATTTTCGTGTTTTCAA-A
* * *
21663852 AAATTTCATTTTTTTCCAAA
1 AATTTTC-GTGTTTT-CAAA
*
21663872 AATTTTCGTG-TTTCTAA
1 AATTTTCGTGTTTTCAAA
* *
21663889 AATATTCGTG-TTT-ACA
1 AATTTTCGTGTTTTCAAA
*
21663905 AATTCTCGTGTTTTCAAA
1 AATTTTCGTGTTTTCAAA
* *
21663923 AATTCTCGTATTTT-AAA
1 AATTTTCGTGTTTTCAAA
21663940 AA
1 AA
21663942 AAAACTTTCG
Statistics
Matches: 328, Mismatches: 63, Indels: 75
0.70 0.14 0.16
Matches are distributed among these distances:
13 3 0.01
14 2 0.01
15 8 0.02
16 31 0.09
17 115 0.35
18 87 0.27
19 39 0.12
20 15 0.05
21 5 0.02
22 23 0.07
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (18 bp):
AATTTTCGTGTTTTCAAA
Found at i:21663711 original size:21 final size:21
Alignment explanation
Indices: 21663669--21663734 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 21
21663659 CTAGTGTTTC
* *
21663669 AAAAATTTTCTTGTTTTCAAAA
1 AAAAAATTTCGTGTTTT-AAAA
21663691 AAAAAATTTCGTGTTTTAAAA
1 AAAAAATTTCGTGTTTTAAAA
*
21663712 AAAATATTTCCGTGTTTTAAAA
1 AAAAAATTT-CGTGTTTTAAAA
21663734 A
1 A
21663735 TTTTCGTGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
21 12 0.30
22 28 0.70
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.41
Consensus pattern (21 bp):
AAAAAATTTCGTGTTTTAAAA
Found at i:21663713 original size:17 final size:17
Alignment explanation
Indices: 21663517--21663942 Score: 107
Period size: 18 Copynumber: 24.0 Consensus size: 17
21663507 TTTCAAAAGT
*
21663517 TTTCGTGTTTGAAAAAAA
1 TTTCGTGTTT-TAAAAAA
*
21663535 TTTTCGCG-TTTAAAAAA
1 -TTTCGTGTTTTAAAAAA
*
21663552 TTTC-TCGTATTTCAAAAA
1 TTTCGT-GT-TTTAAAAAA
* *
21663570 TTGTCGT-TTTTTATAAA
1 TT-TCGTGTTTTAAAAAA
* * *
21663587 TCTTCGTGCTTTCAATAA
1 T-TTCGTGTTTTAAAAAA
*
21663605 TCCTCGTGCTTTT-AAAAA
1 T-TTCGTG-TTTTAAAAAA
* *
21663623 TTCTCATG-TTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
21663640 TCTTCGTGTTTT-CAAAA
1 T-TTCGTGTTTTAAAAAA
* * *
21663657 TTCTAGTGTTTCAAAAAT
1 TT-TCGTGTTTTAAAAAA
*
21663675 TTTCTTGTTTTCAAAAAAAAAA
1 TTTCGTGTTTT-----AAAAAA
21663697 TTTCGTGTTTTAAAAAAAATA
1 TTTCGTGTTTT---AAAAA-A
*
21663718 TTTCCGTGTTTTAAAAAT
1 TTT-CGTGTTTTAAAAAA
21663736 TTTCGTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
21663752 TTCTC-T-TATTT--AAAA
1 TT-TCGTGT-TTTAAAAAA
*
21663767 TTT--TTTTTTAAGAAAAAA
1 TTTCGTGTTTT---AAAAAA
*
21663785 TTT--TGTTTCAAAAAAA
1 TTTCGTGTTT-TAAAAAA
* *
21663801 TGTCTTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
* *
21663817 TTCCCGTGTTTCAAAAAAAA
1 TT-TCGTGTTT--TAAAAAA
*
21663837 TGTCGTGTTTTAAGAAAA
1 TTTCGTGTTTTAA-AAAA
* * *
21663855 TTTCATTTTTTTCCAAAAAT
1 TTTC-GTGTTTT--AAAAAA
*
21663875 TTTCGTGTTTCTAAAATA
1 TTTCGTGTTT-TAAAAAA
*
21663893 -TTCGTG-TTT-ACAAA
1 TTTCGTGTTTTAAAAAA
*
21663907 TTCTCGTGTTTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
21663925 TTCTCGTATTTTAAAAAA
1 TT-TCGTGTTTTAAAAAA
21663943 AAACTTTCGT
Statistics
Matches: 310, Mismatches: 52, Indels: 91
0.68 0.11 0.20
Matches are distributed among these distances:
13 4 0.01
14 5 0.02
15 9 0.03
16 40 0.13
17 73 0.24
18 95 0.31
19 32 0.10
20 23 0.07
21 6 0.02
22 23 0.07
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.45
Consensus pattern (17 bp):
TTTCGTGTTTTAAAAAA
Found at i:21663952 original size:21 final size:19
Alignment explanation
Indices: 21663920--21663966 Score: 51
Period size: 19 Copynumber: 2.3 Consensus size: 19
21663910 TCGTGTTTTC
21663920 AAAAATTCTCGTATTTTAAAA
1 AAAAATTCTCG--TTTTAAAA
21663941 AAAAACTT-TCGTTTTAAAA
1 AAAAA-TTCTCGTTTTAAAA
21663960 AAGAAAT
1 AA-AAAT
21663967 ACTGCGCTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
19 11 0.46
20 3 0.12
21 8 0.33
22 2 0.08
ACGTcount: A:0.51, C:0.09, G:0.06, T:0.34
Consensus pattern (19 bp):
AAAAATTCTCGTTTTAAAA
Found at i:21674925 original size:45 final size:44
Alignment explanation
Indices: 21674828--21674939 Score: 111
Period size: 45 Copynumber: 2.5 Consensus size: 44
21674818 TTATGCTTAA
*
21674828 GATGAAAACCCGAAAAGGGCATCTTAAAAAAAAAAAAGGGATCAG
1 GATGAAAACCCGAAAAGGGCGTCTTAAAAAAAAAAAA-GGATCAG
** * * * *
21674873 GGCGAAAACCCGAAAAGGGCGTCTTGATTAATACAAAAA-GATTAG
1 GATGAAAACCCGAAAAGGGCGTCTT-A-AAAAAAAAAAAGGATCAG
*
21674918 GATGAAAACCCG-AGAGGGCGTC
1 GATGAAAACCCGAAAAGGGCGTC
21674940 CTAATGAAAC
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
44 9 0.16
45 37 0.67
46 1 0.02
47 8 0.15
ACGTcount: A:0.45, C:0.16, G:0.26, T:0.13
Consensus pattern (44 bp):
GATGAAAACCCGAAAAGGGCGTCTTAAAAAAAAAAAAGGATCAG
Found at i:21675933 original size:122 final size:122
Alignment explanation
Indices: 21675713--21675939 Score: 330
Period size: 122 Copynumber: 1.9 Consensus size: 122
21675703 AAGAAAATCA
* *
21675713 ACTCATATCACGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTAAAAATCAACTCATATTGCG
1 ACTCATATCACGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTAAAAATCAACTCATATTGCG
* *
21675778 AGAAGTGAGTTGAGCCTAGGGGCACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
66 AGAAGTGAGTTGAGCCTAGGGACACGCCAAGGTAATTTTAGTTTATGTTTTAAATTG
** * * *
21675835 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTCAAAATCAATTCATATTGCT
1 ACTCATATCACGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTAAAAATCAACTCATATTGCG
* **
21675900 AGAGGTGAGTTGAGCCTCA-GGACACGCTGAGGTAATTTTA
66 AGAAGTGAGTTGAGCCT-AGGGACACGCCAAGGTAATTTTA
21675940 ATTTCTGTCG
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
122 91 0.99
123 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (122 bp):
ACTCATATCACGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTAAAAATCAACTCATATTGCG
AGAAGTGAGTTGAGCCTAGGGACACGCCAAGGTAATTTTAGTTTATGTTTTAAATTG
Found at i:21676179 original size:145 final size:144
Alignment explanation
Indices: 21675867--21678079 Score: 3288
Period size: 143 Copynumber: 15.6 Consensus size: 144
21675857 TAAGCCTTTT
* **
21675867 AATTTATGTTTTTCAAAA-TCAA-TTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 AATTT-TG-TTTTCAAAATTCAACTT-ATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
* ** * *
21675930 GGTAATTTT-AATTTCTGTCGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
63 GGT-ATTTTCAATTTCTG-CTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
*
21675994 GACACGCTGAGGTAATTTC
126 GACACGTTGAGGTAATTTC
21676013 AATTTTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGT
1 AATTTTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGT
21676078 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
21676143 GTTGAGGTAATTTC
131 GTTGAGGTAATTTC
* * *
21676157 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTT-TGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
*
21676222 TAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGC--GAAATGAG-TGAG-CTC-AGACA
65 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
21676281 CGTTGAGGT-ATTT-
130 CGTTGAGGTAATTTC
* *
21676294 --TTTT-TTTT-----TT---C--ATATTGCGAG-AATGAGTTGAGCCTCAAGACACGTTGAGGT
1 AATTTTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGT
*
21676345 AATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
21676409 G-TGAGGTAATTTC
131 GTTGAGGTAATTTC
* * *
21676422 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTT-TGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
21676487 TA-TTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
21676550 CGTTGAGGTAATTTC
130 CGTTGAGGTAATTTC
* * *
21676565 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTT-TGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
*
21676630 TAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
21676694 CGTTGAGGTAATTTC
130 CGTTGAGGTAATTTC
* * *
21676709 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTT-TGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
21676774 TA-TTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
21676837 CGTTGAGGT-ATTTC
130 CGTTGAGGTAATTTC
* * *
21676851 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTT-TGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
*
21676916 TAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
21676980 CGTTGAGGTATTTTC
130 CGTTGAGGTAATTTC
*
21676995 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-GACACG-TGAGG
1 AATTT-TGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
21677058 TA-TTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
21677121 CGTTGAGGT-ATTTC
130 CGTTGAGGTAATTTC
* * *
21677135 AATTTCTG-TTTC-AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTT-TGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
*
21677198 TAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
21677262 CGTTGAGGTATTTTC
130 CGTTGAGGTAATTTC
* * * *
21677277 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTT-TG-TTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
*
21677342 GTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
64 GTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
21677406 ACGTTGAGGT-ATTTC
129 ACGTTGAGGTAATTTC
* * *
21677421 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTT-TGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
*
21677486 TAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
21677550 CGTTGAGGTAATTTC
130 CGTTGAGGTAATTTC
* * *
21677565 AATTTTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 AATTTTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGT
*
21677630 ATTTTCAATTTCTGCTTCTCAAAATTCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
21677694 GTTGAGGTAATTTT
131 GTTGAGGTAATTTC
* * *
21677708 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTT-TGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
21677773 TA-TTTCAATTTCTG--TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
21677835 CGTTGAGGTATTTTC
130 CGTTGAGGTAATTTC
* * * *
21677850 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTT-TG-TTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
*
21677915 GTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
64 GTATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* *
21677979 ACATTGAGGTATTTTC
129 ACGTTGAGGTAATTTC
* *
21677995 AATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGG-CACGCTG
1 AATTT-TG-TTTTCAAAA-TTCAACTTATATTGCGAGAAATGAGTTGAGCCTC-AGGACACGCTG
21678058 AGGTATTTTCAATTTCTGCTTT
62 AGGTATTTTCAATTTCTGCTTT
21678080 ACTAATTCTA
Statistics
Matches: 1988, Mismatches: 32, Indels: 94
0.94 0.02 0.04
Matches are distributed among these distances:
122 68 0.03
123 10 0.01
124 8 0.00
125 5 0.00
126 9 0.00
127 11 0.01
128 2 0.00
130 3 0.00
131 1 0.00
132 4 0.00
133 4 0.00
134 1 0.00
135 3 0.00
137 2 0.00
138 42 0.02
139 24 0.01
140 23 0.01
141 158 0.08
142 225 0.11
143 579 0.29
144 414 0.21
145 378 0.19
146 14 0.01
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (144 bp):
AATTTTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGT
ATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
GTTGAGGTAATTTC
Found at i:21676209 original size:72 final size:72
Alignment explanation
Indices: 21675867--21676290 Score: 610
Period size: 72 Copynumber: 5.9 Consensus size: 72
21675857 TAAGCCTTTT
* * * ** *
21675867 AATTTATGTTTTTCAAAA-TCAATTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
*
21675931 GTAATTTT
65 GTAATTTC
** * *
21675939 AATTTCTGTCGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
1 AATTTCTGT--TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGA
21676004 GGTAATTTC
64 GGTAATTTC
* *
21676013 AATTT-TGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
*
21676077 TATTTTC
66 TAATTTC
*
21676084 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
21676149 GTAATTTC
65 GTAATTTC
*
21676157 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
21676222 TAATTTC
66 TAATTTC
*
21676229 AATTTCTGTTTTCAAAATTCAACTCATATTGC--GAAATGAG-TGAG-CTC-AGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
21676289 TA
66 TA
21676291 TTTTTTTTTT
Statistics
Matches: 330, Mismatches: 17, Indels: 15
0.91 0.05 0.04
Matches are distributed among these distances:
67 15 0.05
68 3 0.01
69 4 0.01
70 8 0.02
71 64 0.19
72 105 0.32
73 77 0.23
74 54 0.16
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTC
Found at i:21676605 original size:72 final size:72
Alignment explanation
Indices: 21676303--21678075 Score: 3256
Period size: 72 Copynumber: 24.8 Consensus size: 72
21676293 TTTTTTTTTT
21676303 TCATATTGCGAG-AATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21676367 ATTCAAC
66 ATTCAAC
21676374 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21676438 ATTCAAC
66 ATTCAAC
21676445 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21676509 ATTCAAC
66 ATTCAAC
21676516 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21676581 ATTCAAC
66 ATTCAAC
21676588 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21676653 ATTCAAC
66 ATTCAAC
21676660 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21676725 ATTCAAC
66 ATTCAAC
21676732 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21676796 ATTCAAC
66 ATTCAAC
21676803 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21676867 ATTCAAC
66 ATTCAAC
21676874 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21676939 ATTCAAC
66 ATTCAAC
*
21676946 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21677011 ATTCAAC
66 ATTCAAC
21677018 TCATATTGCGAGAAATGAGTTGAGCCTC-AGACACG-TGAGGT-ATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21677080 ATTCAAC
66 ATTCAAC
21677087 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAATTTCTG-TTTC-AA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21677149 ATTCAAC
66 ATTCAAC
21677156 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21677221 ATTCAAC
66 ATTCAAC
* *
21677228 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTTCTCAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAA
21677293 AATTCAAC
65 AATTCAAC
21677301 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21677366 ATTCAAC
66 ATTCAAC
21677373 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21677437 ATTCAAC
66 ATTCAAC
21677444 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21677509 ATTCAAC
66 ATTCAAC
21677516 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT-TGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21677580 ATTCAAC
66 ATTCAAC
* *
21677587 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTTCTCAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAA
21677652 AATTCAAC
65 AATTCAAC
*
21677660 T-ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21677724 ATTCAAC
66 ATTCAAC
21677731 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAATTTCTG-TTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21677794 ATTCAAC
66 ATTCAAC
* *
21677801 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTTCTCAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAA
21677866 AATTCAAC
65 AATTCAAC
21677874 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
21677939 ATTCAAC
66 ATTCAAC
* *
21677946 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGCTTTTCAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTCAA
21678011 AACTT-AAC
65 AA-TTCAAC
* * * *
21678019 TCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTG
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG
21678076 CTTTACTAAT
Statistics
Matches: 1661, Mismatches: 22, Indels: 36
0.97 0.01 0.02
Matches are distributed among these distances:
69 107 0.06
70 87 0.05
71 506 0.30
72 740 0.45
73 219 0.13
74 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (72 bp):
TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
ATTCAAC
Found at i:21676972 original size:358 final size:359
Alignment explanation
Indices: 21676303--21678075 Score: 3277
Period size: 358 Copynumber: 5.0 Consensus size: 359
21676293 TTTTTTTTTT
21676303 TCATATTGCGAG-AATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAATTTCTGTTTTCAAA
21676367 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-TGAGGTAATTTCAATTTCTGT
65 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAATTTCTGT
21676431 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAA
129 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
21676495 TTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
194 TTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
*
21676560 ATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
259 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
21676624 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAAC
324 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAAC
21676660 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAATTTCTGTTTTCAAA
21676725 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCTGTT
65 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCTGTT
21676790 TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAAT
130 TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAAT
*
21676854 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
195 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
21676919 TTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
260 TTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
*
21676983 TGAGGTATTTTCAATTTCTGTTTTCAAAATTCAAC
325 TGAGGTAATTTCAATTTCTGTTTTCAAAATTCAAC
21677018 TCATATTGCGAGAAATGAGTTGAGCCTC-AGACACG-TGAGGTATTTCAATTTCTGTTTTCAAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCTGTTTTCAAAA
21677081 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCTG-TT
66 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCTGTTT
21677145 TC-AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
131 TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
21677209 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATT
196 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATT
*
21677274 TTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
261 TTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
21677339 GAGGTAATTTCAATTTCTGTTTTCAAAATTCAAC
326 GAGGTAATTTCAATTTCTGTTTTCAAAATTCAAC
21677373 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCTGTTTTCAAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCTGTTTTCAAAA
21677438 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
66 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCAATTTCTGTT
21677503 TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAAT
130 TTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAAT
21677568 TT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
195 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
*
21677632 TTTCAATTTCTGCTTCTCAAAATTCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
260 TTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
*
21677696 TGAGGTAATTTTAATTTCTGTTTTCAAAATTCAAC
325 TGAGGTAATTTCAATTTCTGTTTTCAAAATTCAAC
21677731 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCTG-TTTCAAAA
1 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCTGTTTTCAAAA
21677795 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGCT
66 TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTCAATTTCTG-T
*
21677860 TCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
129 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
*
21677925 TTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTA
194 TTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
* *
21677990 TTTTCAATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCAC
259 TTTTCAATTTCTGCTTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
* *
21678054 GCTGAGGTATTTTCAATTTCTG
323 GTTGAGGTAATTTCAATTTCTG
21678076 CTTTACTAAT
Statistics
Matches: 1389, Mismatches: 13, Indels: 25
0.97 0.01 0.02
Matches are distributed among these distances:
353 52 0.04
354 88 0.06
355 197 0.14
356 14 0.01
357 165 0.12
358 571 0.41
359 187 0.13
360 115 0.08
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (359 bp):
TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCTGTTTTCAAAA
TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCTGTTT
TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATT
TTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
GAGGTAATTTCAATTTCTGTTTTCAAAATTCAAC
Found at i:21678181 original size:14 final size:14
Alignment explanation
Indices: 21678159--21678191 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
21678149 TCTTTTCAAA
21678159 TTCTG-TTTTTAAT
1 TTCTGTTTTTTAAT
21678172 TTCTGTTTTTTAAT
1 TTCTGTTTTTTAAT
21678186 TTCTGT
1 TTCTGT
21678192 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.70
Consensus pattern (14 bp):
TTCTGTTTTTTAAT
Found at i:21678181 original size:86 final size:87
Alignment explanation
Indices: 21677990--21678181 Score: 214
Period size: 86 Copynumber: 2.2 Consensus size: 87
21677980 CATTGAGGTA
* * * *
21677990 TTTTCAATTTCTGCTTTTCAAAACTTAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACG
1 TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
*
21678055 CTGAGGTATTTTCAATTTCTGC
66 CTGAGGTATTTTCAAATTCTGC
* * * *
21678077 TTTACTAA-TTCTACTTTTTC-AAA-TCAACTCATATTGCAAGAGGTGAGTTGAGTCTC-AGGCC
1 TTT-TTAATTTCT-GTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGG--
*
21678138 ACACGCTGAGGTCTTTTCAAATTCTG-
62 -CACGCTGAGGTATTTTCAAATTCTGC
21678164 TTTTTAATTTCTGTTTTT
1 TTTTTAATTTCTGTTTTT
21678182 TAATTTCTGT
Statistics
Matches: 87, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
85 3 0.03
86 37 0.43
87 17 0.20
88 30 0.34
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (87 bp):
TTTTTAATTTCTGTTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACG
CTGAGGTATTTTCAAATTCTGC
Found at i:21678285 original size:53 final size:54
Alignment explanation
Indices: 21678204--21678450 Score: 380
Period size: 53 Copynumber: 4.6 Consensus size: 54
21678194 TTCAAAAAAA
* *
21678204 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
21678258 AAAAATCAA-TCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
*
21678311 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT--TTTCTATTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
* *
21678361 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCAAATTCT-GTTTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT--AATTTCTATTTTTC
*
21678416 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
21678451 TTGGCTCACG
Statistics
Matches: 179, Mismatches: 7, Indels: 13
0.90 0.04 0.07
Matches are distributed among these distances:
50 47 0.26
52 4 0.02
53 50 0.28
54 35 0.20
55 39 0.22
56 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (54 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTC
Found at i:21678719 original size:14 final size:16
Alignment explanation
Indices: 21678694--21678729 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
21678684 TTTAATTTTC
21678694 AAAATTTCAAAAAA-A
1 AAAATTTCAAAAAATA
21678709 AAAATTT-AAAAAATA
1 AAAATTTCAAAAAATA
21678724 AAAATT
1 AAAATT
21678730 GCATTTTGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (16 bp):
AAAATTTCAAAAAATA
Found at i:21678788 original size:30 final size:29
Alignment explanation
Indices: 21678725--21678841 Score: 119
Period size: 30 Copynumber: 3.9 Consensus size: 29
21678715 TAAAAAATAA
* *
21678725 AAATTGCATTTTGACACCTAAACTTT-TCCT
1 AAATTTCATTTTGAC-CCTAAACTTTCT-TT
21678755 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCC-TAAACTTTCTTT
* * *
21678785 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGA-CCCTAAACTTTCTTT
* * *
21678815 AAATTTCATTTTAATCCTAAATTTTCT
1 AAATTTCATTTTGACCCTAAACTTTCT
21678842 AAAAATTACA
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
29 12 0.16
30 57 0.78
31 4 0.05
ACGTcount: A:0.31, C:0.21, G:0.03, T:0.44
Consensus pattern (29 bp):
AAATTTCATTTTGACCCTAAACTTTCTTT
Found at i:21679106 original size:10 final size:10
Alignment explanation
Indices: 21679087--21679136 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
21679077 TTTTTCGAAG
*
21679087 GAAAAAAGAA
1 GAAAAGAGAA
21679097 GAAAAGAGAA
1 GAAAAGAGAA
21679107 GAAAAGAGAA
1 GAAAAGAGAA
* *
21679117 -AGAGGAGAA
1 GAAAAGAGAA
21679126 GAAAAGA-AA
1 GAAAAGAGAA
21679135 GA
1 GA
21679137 GTACCGGCGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAGAGAA
Found at i:21679137 original size:17 final size:19
Alignment explanation
Indices: 21679090--21679132 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
21679080 TTCGAAGGAA
21679090 AAAAGAAGAAA-A-GAGAAG
1 AAAAG-AGAAAGAGGAGAAG
21679108 AAAAGAGAAAGAGGAGAAG
1 AAAAGAGAAAGAGGAGAAG
21679127 AAAAGA
1 AAAAGA
21679133 AAGAGTACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 6 0.26
19 12 0.52
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAGAGAAAGAGGAGAAG
Found at i:21679198 original size:3 final size:3
Alignment explanation
Indices: 21679192--21679237 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
21679182 GCTAGACTTT
*
21679192 GAA GAA GAA GAA GGAA GAA GAA GGAA GAA GAA -AA GAG GAA GAA GAA
1 GAA GAA GAA GAA -GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA
21679238 AGAAAGAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:21679210 original size:10 final size:10
Alignment explanation
Indices: 21679195--21679223 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
21679185 AGACTTTGAA
21679195 GAAGAAGAAG
1 GAAGAAGAAG
21679205 GAAGAAGAAG
1 GAAGAAGAAG
21679215 GAAGAAGAA
1 GAAGAAGAA
21679224 AAGAGGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:21679210 original size:13 final size:13
Alignment explanation
Indices: 21679192--21679237 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
21679182 GCTAGACTTT
21679192 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
21679205 GAAGAAGAAGGAA-
1 GAAGAAGAA-GAAG
21679218 GAAGAA-AAG-AG
1 GAAGAAGAAGAAG
21679229 GAAGAAGAA
1 GAAGAAGAA
21679238 AGAAAGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 7 0.23
12 4 0.13
13 15 0.50
14 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:21679249 original size:24 final size:24
Alignment explanation
Indices: 21679192--21679250 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 24
21679182 GCTAGACTTT
*
21679192 GAAGAAGAAGAAGGAAGAAGAAGGAA
1 GAAGAA-AAG-AGGAAGAAGAAGAAA
21679218 GAAGAAAAGAGGAAGAAGAAAGAAA
1 GAAGAAAAGAGGAAGAAG-AAGAAA
*
21679243 GAAAAAAA
1 GAAGAAAA
21679251 AAGAAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 9 0.30
25 15 0.50
26 6 0.20
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (24 bp):
GAAGAAAAGAGGAAGAAGAAGAAA
Found at i:21679378 original size:16 final size:16
Alignment explanation
Indices: 21679359--21679389 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21679349 GAAACAAGCC
*
21679359 CAAAAAAAAATCAAAG
1 CAAAAAAAAAGCAAAG
21679375 CAAAAAAAAAGCAAA
1 CAAAAAAAAAGCAAA
21679390 AAAAAGAAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.13, G:0.06, T:0.03
Consensus pattern (16 bp):
CAAAAAAAAAGCAAAG
Found at i:21679551 original size:23 final size:22
Alignment explanation
Indices: 21679525--21679600 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 22
21679515 GCAGCCCAGC
21679525 AGAAAAAAAAAGGAAGAAAAAGA
1 AGAAAAAAAAA-GAAGAAAAAGA
21679548 AGAAAAAGAAAA-AAGAAAAAAGAA
1 AGAAAAA-AAAAGAAG-AAAAAG-A
*
21679572 AAAAAGAAAAAAGAA-AAAAAGA
1 AGAAA-AAAAAAGAAGAAAAAGA
21679594 AGAAAAA
1 AGAAAAA
21679601 GGGGGTTCAA
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
21 2 0.04
22 8 0.17
23 19 0.41
24 13 0.28
25 4 0.09
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (22 bp):
AGAAAAAAAAAGAAGAAAAAGA
Found at i:21679553 original size:22 final size:21
Alignment explanation
Indices: 21679528--21679601 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 21
21679518 GCCCAGCAGA
21679528 AAAAAAAAGGAAGAAAAAGAAG
1 AAAAAAAA-GAAGAAAAAGAAG
*
21679550 AAAAAGAAAAAAGAAAAAAGAA-
1 AAAAA-AAAGAAG-AAAAAGAAG
*
21679572 AAAAAGAAAAAAGAAAAA-AAG
1 AAAAA-AAAGAAGAAAAAGAAG
*
21679593 AAGAAAAAG
1 AAAAAAAAG
21679602 GGGGTTCAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
20 5 0.11
21 9 0.20
22 21 0.46
23 11 0.24
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (21 bp):
AAAAAAAAGAAGAAAAAGAAG
Found at i:21679556 original size:15 final size:15
Alignment explanation
Indices: 21679525--21679599 Score: 93
Period size: 15 Copynumber: 5.1 Consensus size: 15
21679515 GCAGCCCAGC
**
21679525 AGAAAAAAA-AAGGA
1 AGAAAAAAAGAAAAA
21679539 AGAAAAAGAAG-AAAA
1 AGAAAAA-AAGAAAAA
21679554 AG-AAAAAAGAAAAA
1 AGAAAAAAAGAAAAA
21679568 AGAAAAAAAGAAAAA
1 AGAAAAAAAGAAAAA
21679583 AGAAAAAAAGAAGAAA
1 AGAAAAAAAGAA-AAA
21679599 A
1 A
21679600 AGGGGGTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
13 3 0.06
14 17 0.31
15 30 0.56
16 4 0.07
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AGAAAAAAAGAAAAA
Found at i:21679562 original size:7 final size:7
Alignment explanation
Indices: 21679550--21679590 Score: 73
Period size: 7 Copynumber: 5.7 Consensus size: 7
21679540 GAAAAAGAAG
21679550 AAAAAGA
1 AAAAAGA
21679557 AAAAAGA
1 AAAAAGA
21679564 AAAAAGAA
1 AAAAAG-A
21679572 AAAAAGA
1 AAAAAGA
21679579 AAAAAGA
1 AAAAAGA
21679586 AAAAA
1 AAAAA
21679591 AGAAGAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 26 0.79
8 7 0.21
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:21680165 original size:18 final size:19
Alignment explanation
Indices: 21680140--21680195 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 19
21680130 GAAATTTTCG
**
21680140 AATTTTCGCGTTT-TCAAA
1 AATTTTCGCGTTTGAAAAA
* *
21680158 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTGAAAAA
21680177 AATTTTCGCGTTT-AAAAA
1 AATTTTCGCGTTTGAAAAA
21680195 A
1 A
21680196 TTTCTCGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
18 17 0.55
19 14 0.45
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (19 bp):
AATTTTCGCGTTTGAAAAA
Found at i:21680213 original size:37 final size:37
Alignment explanation
Indices: 21680140--21680213 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
21680130 GAAATTTTCG
* * * *
21680140 AATTTTCGCGTTTTCAAAAGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
21680177 AATTTTCGCG-TTTAAAAAATTTCTCGTATTTCAAAAA
1 AATTTTCGCGTTTTAAAAAATTT-TCGTATTTCAAAAA
21680214 TTGTCGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (37 bp):
AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
Found at i:21680314 original size:16 final size:16
Alignment explanation
Indices: 21680263--21680316 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
21680253 CGTGCTTTTA
21680263 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
21680279 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
21680297 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
21680313 AAAA
1 AAAA
21680317 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:21680332 original size:18 final size:18
Alignment explanation
Indices: 21680140--21680396 Score: 138
Period size: 17 Copynumber: 14.2 Consensus size: 18
21680130 GAAATTTTCG
*
21680140 AATTTTCGCGTTTTCAAA
1 AATTTTCGTGTTTTCAAA
* **
21680158 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGTGTTT-TCAAA
* *
21680177 AATTTTCGCG-TTTAAAA
1 AATTTTCGTGTTTTCAAA
*
21680194 AATTTCTCGT-ATTTCAAA
1 AATTT-TCGTGTTTTCAAA
* * *
21680212 AATTGTCGT-TTTTTATA
1 AATTTTCGTGTTTTCAAA
* * *
21680229 AATCTTCGTGCTTTCAAT
1 AATTTTCGTGTTTTCAAA
**
21680247 AATCCTCGTGCTTTT-AAA
1 AATTTTCGTG-TTTTCAAA
* *
21680265 AATTCTCATG-TTTCAAA
1 AATTTTCGTGTTTTCAAA
*
21680282 AATCTTCGTGTTTTC-AA
1 AATTTTCGTGTTTTCAAA
* *
21680299 AATTCTAGTG-TTTCAAA
1 AATTTTCGTGTTTTCAAA
*
21680316 AATTTTCTTGTTTTCAAAAAAA
1 AATTTTCGTGTTTTC----AAA
* *
21680338 AAATTTCGTGTTTTAAAAAA
1 AATTTTCGTGTTTT--CAAA
21680358 AATATTTCCGTGTTTT--AA
1 AAT-TTT-CGTGTTTTCAAA
21680376 AATTTTCGTGTTTT-AAA
1 AATTTTCGTGTTTTCAAA
21680393 AATT
1 AATT
21680397 CTCTATTTAA
Statistics
Matches: 184, Mismatches: 37, Indels: 37
0.71 0.14 0.14
Matches are distributed among these distances:
16 15 0.08
17 62 0.34
18 62 0.34
19 14 0.08
20 5 0.03
21 3 0.02
22 23 0.12
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (18 bp):
AATTTTCGTGTTTTCAAA
Found at i:21680355 original size:21 final size:21
Alignment explanation
Indices: 21680313--21680377 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 21
21680303 CTAGTGTTTC
* *
21680313 AAAAATTTTCTTGTTTTCAAAA
1 AAAAAATTTCGTGTTTT-AAAA
21680335 AAAAAATTTCGTGTTTTAAAA
1 AAAAAATTTCGTGTTTTAAAA
*
21680356 AAAATATTTCCGTGTTTTAAAA
1 AAAAAATTT-CGTGTTTTAAAA
21680378 TTTTCGTGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
21 12 0.31
22 27 0.69
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.42
Consensus pattern (21 bp):
AAAAAATTTCGTGTTTTAAAA
Found at i:21680357 original size:17 final size:17
Alignment explanation
Indices: 21680161--21680582 Score: 96
Period size: 17 Copynumber: 24.0 Consensus size: 17
21680151 TTTCAAAAGT
*
21680161 TTTCGTGTTTGAAAAAAA
1 TTTCGTGTTT-TAAAAAA
*
21680179 TTTTCGCG-TTTAAAAAA
1 -TTTCGTGTTTTAAAAAA
*
21680196 TTTC-TCGTATTTCAAAAA
1 TTTCGT-GT-TTTAAAAAA
* *
21680214 TTGTCGT-TTTTTATAAA
1 TT-TCGTGTTTTAAAAAA
* * *
21680231 TCTTCGTGCTTTCAATAA
1 T-TTCGTGTTTTAAAAAA
*
21680249 TCCTCGTGCTTTT-AAAAA
1 T-TTCGTG-TTTTAAAAAA
* *
21680267 TTCTCATG-TTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
21680284 TCTTCGTGTTTT-CAAAA
1 T-TTCGTGTTTTAAAAAA
* * *
21680301 TTCTAGTGTTTCAAAAAT
1 TT-TCGTGTTTTAAAAAA
*
21680319 TTTCTTGTTTTCAAAAAAAAAA
1 TTTCGTGTTTT-----AAAAAA
21680341 TTTCGTGTTTTAAAAAAAATA
1 TTTCGTGTTTT---AAAAA-A
*
21680362 TTTCCGTGTTTT-AAAAT
1 TTT-CGTGTTTTAAAAAA
21680379 TTTCGTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
*
21680395 TTCTC-T-ATTT--AAAA
1 TT-TCGTGTTTTAAAAAA
21680409 TTT--T-TTTTAAGAAAAA
1 TTTCGTGTTTT-A-AAAAA
*
21680425 TTT--TGTTTCAAAAAAA
1 TTTCGTGTTT-TAAAAAA
* *
21680441 TGTCTTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
* *
21680457 TTCCCGTGTTTCAAAAAAAAA
1 TT-TCGTGTTT---TAAAAAA
*
21680478 TGTCGTGTTTTAAGAAAA
1 TTTCGTGTTTTAA-AAAA
* *
21680496 TTTCGTTTTTTTCCAAAAAT
1 TTTCG-TGTTTT--AAAAAA
*
21680516 TTTCGTGTTTCTAAAATA
1 TTTCGTGTTT-TAAAAAA
*
21680534 -TTCGTG-TTT-ACAAA
1 TTTCGTGTTTTAAAAAA
*
21680548 TTCTCGTGTTTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
21680566 TTCTCGT-ATTTAAAAAA
1 TT-TCGTGTTTTAAAAAA
21680583 AAACTTTCGT
Statistics
Matches: 308, Mismatches: 51, Indels: 90
0.69 0.11 0.20
Matches are distributed among these distances:
12 4 0.01
13 1 0.00
14 9 0.03
15 5 0.02
16 52 0.17
17 80 0.26
18 77 0.25
19 20 0.06
20 25 0.08
21 12 0.04
22 23 0.07
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (17 bp):
TTTCGTGTTTTAAAAAA
Found at i:21680385 original size:16 final size:18
Alignment explanation
Indices: 21680356--21680393 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
21680346 TGTTTTAAAA
21680356 AAAATATTTCCGTGTTTT
1 AAAATATTTCCGTGTTTT
21680374 AAAAT-TTT-CGTGTTTT
1 AAAATATTTCCGTGTTTT
21680390 AAAA
1 AAAA
21680394 ATTCTCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 12 0.60
17 3 0.15
18 5 0.25
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (18 bp):
AAAATATTTCCGTGTTTT
Found at i:21680426 original size:16 final size:16
Alignment explanation
Indices: 21680405--21680456 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
21680395 TTCTCTATTT
*
21680405 AAAATTTT-TTTTAAGA
1 AAAATTTTGTTTCAA-A
21680421 AAAATTTTGTTTCAAA
1 AAAATTTTGTTTCAAA
*
21680437 AAAATGTCTTGTTTTAAA
1 AAAAT-T-TTGTTTCAAA
21680455 AA
1 AA
21680457 TTCCCGTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 14 0.45
17 6 0.19
18 11 0.35
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (16 bp):
AAAATTTTGTTTCAAA
Found at i:21680452 original size:35 final size:36
Alignment explanation
Indices: 21680413--21680503 Score: 84
Period size: 37 Copynumber: 2.6 Consensus size: 36
21680403 TTAAAATTTT
*
21680413 TTTTAAGAAAAATTTTGTTTC-AAAAAAATGTCTTG
1 TTTTAAGAAAAATTTTGTTTCAAAAAAAATGTCGTG
*
21680448 TTTT---AAAAATTCCCGTGTTTCAAAAAAAAATGTCGTG
1 TTTTAAGAAAAATT---TTGTTTC-AAAAAAAATGTCGTG
*
21680485 TTTTAAG-AAAATTTCGTTT
1 TTTTAAGAAAAATTTTGTTT
21680504 TTTTCCAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 15
0.70 0.06 0.24
Matches are distributed among these distances:
32 7 0.16
35 10 0.23
36 4 0.09
37 17 0.39
39 6 0.14
ACGTcount: A:0.37, C:0.09, G:0.12, T:0.42
Consensus pattern (36 bp):
TTTTAAGAAAAATTTTGTTTCAAAAAAAATGTCGTG
Found at i:21680582 original size:18 final size:18
Alignment explanation
Indices: 21680545--21680583 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
21680535 TCGTGTTTAC
* **
21680545 AAATTCTCGTGTTTTCAA
1 AAATTCTCGTATTTAAAA
21680563 AAATTCTCGTATTTAAAA
1 AAATTCTCGTATTTAAAA
21680581 AAA
1 AAA
21680584 AACTTTCGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (18 bp):
AAATTCTCGTATTTAAAA
Found at i:21681703 original size:11 final size:12
Alignment explanation
Indices: 21681688--21681726 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
21681678 ATACTAGATA
*
21681688 ATTAATTTAAAT
1 ATTAATATAAAT
21681700 -TTAATATAAAT
1 ATTAATATAAAT
*
21681711 ATTAAGATAAAT
1 ATTAATATAAAT
21681723 ATTA
1 ATTA
21681727 TTTAATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (12 bp):
ATTAATATAAAT
Found at i:21681719 original size:32 final size:32
Alignment explanation
Indices: 21681659--21681720 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
21681649 AGTGATAAGA
*
21681659 AATTTAAATATTAAGATGAATACTAGATAATT
1 AATTTAAATATTAAGATAAATACTAGATAATT
* *
21681691 AATTTAAAT-TTAATATAAATATTAAGATAA
1 AATTTAAATATTAAGATAAATACT-AGATAA
21681721 ATATTATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 11 0.42
32 15 0.58
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (32 bp):
AATTTAAATATTAAGATAAATACTAGATAATT
Found at i:21687597 original size:10 final size:10
Alignment explanation
Indices: 21687582--21687609 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
21687572 TAATTGCTTT
21687582 AAAAATTATA
1 AAAAATTATA
21687592 AAAAATTATA
1 AAAAATTATA
21687602 AAAAATTA
1 AAAAATTA
21687610 ACTAATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAAATTATA
Found at i:21688385 original size:12 final size:12
Alignment explanation
Indices: 21688368--21688392 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21688358 ACGCGAATAC
21688368 GGTATTGATGGA
1 GGTATTGATGGA
21688380 GGTATTGATGGA
1 GGTATTGATGGA
21688392 G
1 G
21688393 AAGACCTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.44, T:0.32
Consensus pattern (12 bp):
GGTATTGATGGA
Found at i:21692820 original size:19 final size:20
Alignment explanation
Indices: 21692788--21692825 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
21692778 TTATTCTATG
*
21692788 ATTTTTACATATTTTTAATA
1 ATTTTTACATATTTGTAATA
*
21692808 ATTTTTATA-ATTTGTAAT
1 ATTTTTACATATTTGTAAT
21692826 TTTATATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (20 bp):
ATTTTTACATATTTGTAATA
Found at i:21695524 original size:12 final size:12
Alignment explanation
Indices: 21695507--21695543 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
21695497 TAGAAAGCTT
21695507 GAATTAAGTTAA
1 GAATTAAGTTAA
21695519 GAATTAAGTT-A
1 GAATTAAGTTAA
21695530 GAAATTAAGTTAA
1 G-AATTAAGTTAA
21695543 G
1 G
21695544 TTTATTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 2 0.09
12 19 0.83
13 2 0.09
ACGTcount: A:0.49, C:0.00, G:0.19, T:0.32
Consensus pattern (12 bp):
GAATTAAGTTAA
Found at i:21700226 original size:16 final size:16
Alignment explanation
Indices: 21700202--21700232 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21700192 TTCAGACATT
*
21700202 ATATTAAAAAAAATAG
1 ATATGAAAAAAAATAG
21700218 ATATGAAAAAAAATA
1 ATATGAAAAAAAATA
21700233 TTTATTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (16 bp):
ATATGAAAAAAAATAG
Found at i:21710854 original size:25 final size:25
Alignment explanation
Indices: 21710826--21710889 Score: 60
Period size: 25 Copynumber: 2.5 Consensus size: 25
21710816 GACAACCATA
*
21710826 AAAATAAAAATATAGTTCAA-AAGAT
1 AAAATAAAAATA-AGTTCAAGAAAAT
*
21710851 AAAA-ACAAAATAAGTTTAAGAAAAT
1 AAAATA-AAAATAAGTTCAAGAAAAT
*
21710876 AACAATAAACATAA
1 AA-AATAAAAATAA
21710890 AAATAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
24 7 0.22
25 16 0.50
26 8 0.25
27 1 0.03
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.20
Consensus pattern (25 bp):
AAAATAAAAATAAGTTCAAGAAAAT
Found at i:21710894 original size:12 final size:12
Alignment explanation
Indices: 21710871--21710908 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
21710861 TAAGTTTAAG
*
21710871 AAAATAACAATA
1 AAAATAAAAATA
*
21710883 AACATAAAAATA
1 AAAATAAAAATA
21710895 AAAAT-AAAATA
1 AAAATAAAAATA
21710906 AAA
1 AAA
21710909 CAAATGGACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAAATA
Found at i:21710894 original size:18 final size:17
Alignment explanation
Indices: 21710871--21710908 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
21710861 TAAGTTTAAG
*
21710871 AAAATAACAATAAACATA
1 AAAATAAAAATAAA-ATA
21710889 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAATA
21710906 AAA
1 AAA
21710909 CAAATGGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.16
Consensus pattern (17 bp):
AAAATAAAAATAAAATA
Found at i:21712565 original size:20 final size:21
Alignment explanation
Indices: 21712537--21712575 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
21712527 TTAAGAATAC
*
21712537 AAATTAAATGATAA-AAAATG
1 AAATAAAATGATAATAAAATG
*
21712557 AAATAAAATTATAATAAAA
1 AAATAAAATGATAATAAAA
21712576 ACAACCAGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (21 bp):
AAATAAAATGATAATAAAATG
Found at i:21712618 original size:23 final size:23
Alignment explanation
Indices: 21712586--21712663 Score: 76
Period size: 23 Copynumber: 3.5 Consensus size: 23
21712576 ACAACCAGTA
*
21712586 AAAAAT-ATATATAACT-AATAAT
1 AAAAATAATATATAA-TAAACAAT
21712608 AAAAATAATATATAATAAACAAT
1 AAAAATAATATATAATAAACAAT
* *
21712631 --AAATAATAAACAATAAACAA-
1 AAAAATAATATATAATAAACAAT
21712651 ATAAAATAATATA
1 A-AAAATAATATA
21712664 ACTAATAAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
21 18 0.38
22 7 0.15
23 22 0.47
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (23 bp):
AAAAATAATATATAATAAACAAT
Found at i:21712622 original size:7 final size:7
Alignment explanation
Indices: 21712596--21712671 Score: 57
Period size: 7 Copynumber: 10.6 Consensus size: 7
21712586 AAAAATATAT
*
21712596 ATAACTA
1 ATAAATA
21712603 AT-AATA
1 ATAAATA
21712609 A-AAATA
1 ATAAATA
*
21712615 ATATATA
1 ATAAATA
*
21712622 ATAAACA
1 ATAAATA
21712629 ATAAATA
1 ATAAATA
*
21712636 ATAAACA
1 ATAAATA
*
21712643 ATAAACAA
1 ATAAA-TA
21712651 ATAAAATA
1 AT-AAATA
21712659 ATATAACTA
1 ATA-AA-TA
21712668 ATAA
1 ATAA
21712672 GAAAAATAGA
Statistics
Matches: 55, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
6 9 0.16
7 29 0.53
8 9 0.16
9 8 0.15
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (7 bp):
ATAAATA
Found at i:21712679 original size:21 final size:22
Alignment explanation
Indices: 21712585--21712677 Score: 79
Period size: 21 Copynumber: 4.2 Consensus size: 22
21712575 AACAACCAGT
21712585 AAAAAATATATATAACTAAT-AA
1 AAAAAATA-ATATAACTAATAAA
*
21712607 TAAAAATAATAT-A-TAATAAA
1 AAAAAATAATATAACTAATAAA
*
21712627 CAATAAATAATA-AAC-AATAAACA
1 -AAAAAATAATATAACTAAT-AA-A
*
21712650 AATAAAATAATATAACTAATAAG
1 AA-AAAATAATATAACTAATAAA
21712673 AAAAA
1 AAAAA
21712678 TAGATAAGAA
Statistics
Matches: 57, Mismatches: 5, Indels: 18
0.71 0.06 0.22
Matches are distributed among these distances:
19 4 0.07
20 3 0.05
21 17 0.30
22 14 0.25
23 11 0.19
24 5 0.09
25 3 0.05
ACGTcount: A:0.70, C:0.05, G:0.01, T:0.24
Consensus pattern (22 bp):
AAAAAATAATATAACTAATAAA
Found at i:21712679 original size:44 final size:46
Alignment explanation
Indices: 21712609--21712711 Score: 114
Period size: 44 Copynumber: 2.4 Consensus size: 46
21712599 ACTAATAATA
*
21712609 AAAATAATAT-ATAATAAACAATAAATA-ATAA-ACAATAAACAAAT
1 AAAATAATATAATAATAAACAATAAATAGATAAGA-AACAAACAAAT
*
21712653 AAAATAATATAACTAAT-AAGAA-AAATAGATAAGAAACAAACAAAT
1 AAAATAATATAA-TAATAAACAATAAATAGATAAGAAACAAACAAAT
21712698 -AAATAA-ATAA-AATA
1 AAAATAATATAATAATA
21712712 GGCAAACGGT
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
41 3 0.06
43 4 0.08
44 21 0.40
45 19 0.37
46 5 0.10
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.20
Consensus pattern (46 bp):
AAAATAATATAATAATAAACAATAAATAGATAAGAAACAAACAAAT
Found at i:21719199 original size:24 final size:26
Alignment explanation
Indices: 21719163--21719231 Score: 74
Period size: 27 Copynumber: 2.8 Consensus size: 26
21719153 TCAACTAACA
21719163 AAGAG-AG-GAAGAAA-AA-AGGAAT
1 AAGAGAAGAGAAGAAACAAGAGGAAT
*
21719185 AAGAGAAGAGAAGAAACAAGTTGGAAT
1 AAGAGAAGAGAAGAAACAAG-AGGAAT
* *
21719212 GAGAGAATAGAAGAAACAAG
1 AAGAGAAGAGAAGAAACAAG
21719232 TTTGAATGGG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
22 5 0.13
23 2 0.05
24 7 0.18
25 2 0.05
27 23 0.59
ACGTcount: A:0.59, C:0.03, G:0.30, T:0.07
Consensus pattern (26 bp):
AAGAGAAGAGAAGAAACAAGAGGAAT
Found at i:21719239 original size:27 final size:27
Alignment explanation
Indices: 21719180--21719239 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
21719170 GAAGAAAAAA
*
21719180 GGAATAAGAGAAGAGAAGAAACAAGTT
1 GGAATGAGAGAAGAGAAGAAACAAGTT
*
21719207 GGAATGAGAGAATAGAAGAAACAAGTT
1 GGAATGAGAGAAGAGAAGAAACAAGTT
*
21719234 TGAATG
1 GGAATG
21719240 GGAAAAGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.52, C:0.03, G:0.30, T:0.15
Consensus pattern (27 bp):
GGAATGAGAGAAGAGAAGAAACAAGTT
Found at i:21722398 original size:51 final size:51
Alignment explanation
Indices: 21722317--21722482 Score: 305
Period size: 51 Copynumber: 3.3 Consensus size: 51
21722307 CGGATCACAT
* *
21722317 TTATTACTTGTCACTTGTCACTGATTAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
*
21722368 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGTTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
21722419 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
21722470 TTATCACTTGTCA
1 TTATCACTTGTCA
21722483 TTGATCAGAA
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 111 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:21726668 original size:13 final size:14
Alignment explanation
Indices: 21726641--21726667 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
21726631 CTAATAAGAT
21726641 TTAAAGAAAAAAAA
1 TTAAAGAAAAAAAA
21726655 TTAAAGAAAAAAA
1 TTAAAGAAAAAAA
21726668 TGAATATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (14 bp):
TTAAAGAAAAAAAA
Found at i:21727441 original size:3 final size:3
Alignment explanation
Indices: 21727433--21727531 Score: 198
Period size: 3 Copynumber: 33.0 Consensus size: 3
21727423 GTATTTCTTC
21727433 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
21727481 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
21727529 AGA
1 AGA
21727532 TAAAAACAAA
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 96 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:21730008 original size:11 final size:11
Alignment explanation
Indices: 21729988--21730026 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
21729978 AGCTCGACCC
*
21729988 ATATTAAATAT
1 ATATTTAATAT
21729999 ATATTTAATAT
1 ATATTTAATAT
**
21730010 ATATACAATAT
1 ATATTTAATAT
21730021 ATATTT
1 ATATTT
21730027 GATTAAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (11 bp):
ATATTTAATAT
Found at i:21738228 original size:34 final size:34
Alignment explanation
Indices: 21738190--21738254 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
21738180 CCGCCAATAA
**
21738190 ATCGATAGCATCAATTTCAAACACAAAATAACAG
1 ATCGATAGCATCAACGTCAAACACAAAATAACAG
*
21738224 ATCGATAGTATCAACGTCAAACACAAAATAA
1 ATCGATAGCATCAACGTCAAACACAAAATAA
21738255 TTTGTTTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.51, C:0.20, G:0.09, T:0.20
Consensus pattern (34 bp):
ATCGATAGCATCAACGTCAAACACAAAATAACAG
Found at i:21743004 original size:21 final size:21
Alignment explanation
Indices: 21742980--21743034 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
21742970 AAAGAATGAG
*
21742980 TTTTATAGGAAATTACTTGGAT
1 TTTTATAGGAAA-AACTTGGAT
* * *
21743002 TTTTTTATGAAAAATTTGGA-
1 TTTTATAGGAAAAACTTGGAT
21743022 TTTTATAGGAAAA
1 TTTTATAGGAAAA
21743035 CCCATTTTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
20 11 0.41
21 6 0.22
22 10 0.37
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.45
Consensus pattern (21 bp):
TTTTATAGGAAAAACTTGGAT
Found at i:21749929 original size:21 final size:21
Alignment explanation
Indices: 21749905--21749958 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
21749895 TGAGCAAAAT
*
21749905 TTTGCTAATGAGAAAAAGGAG
1 TTTGCTATTGAGAAAAAGGAG
* * *
21749926 TTTGCTATTGTGGAATAGGAG
1 TTTGCTATTGAGAAAAAGGAG
21749947 TTTGCTATTGAG
1 TTTGCTATTGAG
21749959 GAGCTTCTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.06, G:0.30, T:0.35
Consensus pattern (21 bp):
TTTGCTATTGAGAAAAAGGAG
Found at i:21753716 original size:130 final size:130
Alignment explanation
Indices: 21753559--21753913 Score: 548
Period size: 130 Copynumber: 2.7 Consensus size: 130
21753549 AATGTTGTTT
*
21753559 TCTTCGATCTATTCCACTGTTGTCCAGGGAGATAGAACTACCAGCTTCAATGTACTCCACTGTAA
1 TCTTCGATCTATTCCACTGTTGTCCAGGGAGATAGAACTACCAGCTTCAATATACTCCACTGTAA
*
21753624 TCAGGGAGGTAAAATCCGCCGTCTTCGACCTGCTCCACTATTGCTTAGAGAGATAAGATCTGTAA
66 TCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTCCACTATTGCTTAGAGAGATAAGATCTGTAA
*
21753689 TCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATATACTCCACTGTAA
1 TCTTCGATCTATTCCACTGTTGTCCAGGGAGATAGAACTACCAGCTTCAATATACTCCACTGTAA
*
21753754 TCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAA
66 TCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTCCACTATTGCTTAGAGAGATAAGATCTGTAA
* *** * ** * *
21753819 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATATACTCCACTGT
1 TCTTCGATCTATTCCACTG--TTGTCCAGGGAGATAGAACTACCAGCTTCAATATACTCCACTGT
* * *
21753884 AGTCAGGGAGGTAAACTCTGCCATCTTCGA
64 AATCAGGGAGGTAAAATCCGCCATCTTCGA
21753914 TCTTCAATCT
Statistics
Matches: 206, Mismatches: 17, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
130 144 0.70
132 62 0.30
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (130 bp):
TCTTCGATCTATTCCACTGTTGTCCAGGGAGATAGAACTACCAGCTTCAATATACTCCACTGTAA
TCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTCCACTATTGCTTAGAGAGATAAGATCTGTAA
Found at i:21753790 original size:43 final size:43
Alignment explanation
Indices: 21753611--21753792 Score: 105
Period size: 43 Copynumber: 4.2 Consensus size: 43
21753601 AGCTTCAATG
* *
21753611 TACTCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTCGACC
1 TACTCCACTGTAATCAGGGAGATAAAATCCGCCATCTTCGACC
* * ** * * * * ** *
21753654 TGCTCCACTATTGCTTAGAGAGATAAGATCTGTAATCTTCGATC
1 TACTCCACT-GTAATCAGGGAGATAAAATCCGCCATCTTCGACC
* *** * ** * * **
21753698 TATTCCACTGTTGCCCAGGGAGATAGAA-CTACCAGCTTCAATA
1 TACTCCACTG-TAATCAGGGAGATAAAATCCGCCATCTTCGACC
*
21753741 TACTCCACTGTAATCAGGGAGGTAAAATCCGCCATCTTCGACC
1 TACTCCACTGTAATCAGGGAGATAAAATCCGCCATCTTCGACC
*
21753784 TGCTCCACT
1 TACTCCACT
21753793 ATTGCTTAGG
Statistics
Matches: 96, Mismatches: 40, Indels: 6
0.68 0.28 0.04
Matches are distributed among these distances:
42 12 0.12
43 43 0.45
44 41 0.43
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
TACTCCACTGTAATCAGGGAGATAAAATCCGCCATCTTCGACC
Found at i:21753880 original size:45 final size:45
Alignment explanation
Indices: 21753820--21754111 Score: 130
Period size: 45 Copynumber: 6.4 Consensus size: 45
21753810 GATCTGTAAT
*
21753820 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
* * * * * * *
21753865 CTTCAATATACTCCACTG--TAGT-CAGGGAGGTAAACTCTGCCATCTTCGAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGT-T---A---TCG-G
*
21753915 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
* * * * * * * ** **
21753960 CTTTAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
** * * * * ** * * **
21754003 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGATCTGCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTAT-C-GG
*
21754049 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
*
21754094 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
21754112 TGGTCAGGGA
Statistics
Matches: 173, Mismatches: 56, Indels: 36
0.65 0.21 0.14
Matches are distributed among these distances:
42 22 0.13
43 20 0.12
44 1 0.01
45 51 0.29
46 41 0.24
47 4 0.02
49 4 0.02
50 16 0.09
52 3 0.02
53 11 0.06
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
Found at i:21753924 original size:95 final size:95
Alignment explanation
Indices: 21753818--21754011 Score: 352
Period size: 95 Copynumber: 2.0 Consensus size: 95
21753808 AAGATCTGTA
21753818 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATATACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATATACTCCACTG
*
21753883 TAGTCAGGGAGGTAAACTCTGCCATCTTCG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCG
* *
21753913 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATATACTCCACTG
*
21753978 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCG
21754008 ATCT
1 ATCT
21754012 GCTTCGCTGC
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATATACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTCG
Found at i:21754487 original size:135 final size:134
Alignment explanation
Indices: 21753913--21754746 Score: 1476
Period size: 134 Copynumber: 6.2 Consensus size: 134
21753903 GCCATCTTCG
* *
21753913 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
21753978 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
21754043 TGCA
131 TGCA
*
21754047 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
21754112 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
21754177 TGCA
131 TGCA
*
21754181 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
* *
21754246 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAAGAAGGCCAA-AT
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGG-CAAGAT
21754310 CTGCA
130 CTGCA
*
21754315 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAGTGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
21754380 TAGTCAGGGAGGTAAAATCTGCCATCTTTTGATCTGCTTCGCTGTCAAATACAGGAAGGCAAGAT
66 TAGTCAGGGAGGTAAAATCTGCCATC-TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGAT
21754445 CTGCA
130 CTGCA
21754450 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
* *
21754515 TGGTCAGGGAGGTAAAATCTGCCATCTTTTGATCTGCTTCGCTGTCAAATACAGGAAGGCAAGAT
66 TAGTCAGGGAGGTAAAATCTGCCATC-TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGAT
21754580 CTGCA
130 CTGCA
21754585 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
* *
21754650 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTTCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
*
21754715 TGTA
131 TGCA
*
21754719 ATCTTCGATCTACTT-CAC-GCCAAATACA
1 ATCTTCAATCTA-TTCCACTGCCAAATACA
21754747 TGAAGATAAG
Statistics
Matches: 680, Mismatches: 16, Indels: 9
0.96 0.02 0.01
Matches are distributed among these distances:
133 10 0.01
134 405 0.60
135 265 0.39
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCA
Found at i:21754758 original size:45 final size:46
Alignment explanation
Indices: 21754666--21755458 Score: 401
Period size: 45 Copynumber: 17.9 Consensus size: 46
21754656 GGGAGGTAAA
* * * *
21754666 ATCTGCCATCTTCGATCTTCTTCGCTGCCAAATACAGGAAGGCAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* *
21754712 ATCTG-TAATCTTCGATCTACTTCAC-GCCAAATACATGAAGATAAG
1 ATCTGCT-ATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * ** * **
21754757 ATCTGCTTTCTTCGATCTACTTCGCCACC-AGTATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * * * * **
21754802 ATCTGC-ATCGTCAATCCACTTC-CTACC-AATATAGGAAGACCGG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * *
21754845 ATCTGCTACCTTCGATCTACTTCAC-GCC-AATACATGAATACAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * * * ** **
21754889 ATCTGCTTTCTGCAATCTACTTCGCCACC-AATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * * * *
21754934 ATCTGC-ATCTTCGATCCACTTC-CTACC-AATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * * * ** **
21754977 ATCTGATACCTTCGATCTAATTCGCCACC-AATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * * * ** **
21755022 ATCTGCTTTCTGCAATCTACTTCGCCACC-AATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * * * * * *
21755067 ATCTGC-ATCGTCAATCCACTTC-CTACC-AATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * *
21755110 ATCTACTACCTTCGATCTACTTCAC-GCC-AATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * * * ** **
21755154 ATCTGCTTTCTGCAATCTACTTCGCCACC-AATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * * * *
21755199 ATCTGC-ATCTTCGATCCACTTC-CTACC-AATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * * ** **
21755242 ATCTGATACCTTCGATCTACTTCGCCACC-AATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * * ** **
21755287 ATCTGCTTTCTGT-AATCTACTTCGCCACC-AATATGGGAAGACAAG
1 ATCTGCTATCT-TCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * * *
21755332 ATCTGC-ATCTTCGATCTACTTC-CTACC-AATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * ** **
21755375 ATCTGCTACCTTCGATCTACTTCGCCACC-AATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
* * * * *
21755420 ATTTG-TATCTTTGATCCACTTC-CTACC-AATATAGGAAGA
1 ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGA
21755459 TAGGACCTAT
Statistics
Matches: 601, Mismatches: 129, Indels: 37
0.78 0.17 0.05
Matches are distributed among these distances:
43 127 0.21
44 206 0.34
45 243 0.40
46 25 0.04
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (46 bp):
ATCTGCTATCTTCGATCTACTTCACTGCCAAATACAGGAAGACAAG
Found at i:21754858 original size:88 final size:88
Alignment explanation
Indices: 21754666--21755458 Score: 699
Period size: 88 Copynumber: 9.0 Consensus size: 88
21754656 GGGAGGTAAA
* * ** * * * *
21754666 ATCTGCCATCTTCGATCTTCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCGATCTA
1 ATCTGCTATCTTCGATCTACTTC-CCACC-AATATAGGAAGACAAGATCTG-CATCTTCAATCTA
* * *
21754731 CTTCACGCCA--AATACATGAAGATAAG
63 CTT--CGCCACCAATATAGGAAGACAAG
* * * * *
21754757 ATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGTCAATCCACT
1 ATCTGCTATCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCATCTTCAATCTACT
* **
21754822 TC-CTACCAATATAGGAAGACCGG
65 TCGCCACCAATATAGGAAGACAAG
* * * * * * * *
21754845 ATCTGCTACCTTCGATCTACTTCACGCCAATACATGAATACAAGATCTGCTTTCTGCAATCTACT
1 ATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGC-ATCTTCAATCTACT
*
21754910 TCGCCACCAATATGGGAAGACAAG
65 TCGCCACCAATATAGGAAGACAAG
* * * * * *
21754934 ATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG-ATACCTTCGATCTAA
1 ATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCAT--CTTCAATCTAC
*
21754997 TTCGCCACCAATATGGGAAGACAAG
64 TTCGCCACCAATATAGGAAGACAAG
* * * * * *
21755022 ATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCAATCCACT
1 ATCTGCTATCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCATCTTCAATCTACT
* * *
21755087 TC-CTACCAATATAGGAAGATAGG
65 TCGCCACCAATATAGGAAGACAAG
* * * * * * * *
21755110 ATCTACTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCAATCTACT
1 ATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGC-ATCTTCAATCTACT
*
21755175 TCGCCACCAATATGGGAAGACAAG
65 TCGCCACCAATATAGGAAGACAAG
* * * * *
21755199 ATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG-ATACCTTCGATCTAC
1 ATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCAT--CTTCAATCTAC
*
21755262 TTCGCCACCAATATGGGAAGACAAG
64 TTCGCCACCAATATAGGAAGACAAG
* * * *
21755287 ATCTGCTTTCTGT-AATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTAC
1 ATCTGCTATCT-TCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCATCTTCAATCTAC
* * *
21755351 TTC-CTACCAATATAGGAAGATAGG
64 TTCGCCACCAATATAGGAAGACAAG
* * * * ** *
21755375 ATCTGCTACCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATTTGTATCTTTGATCCACT
1 ATCTGCTATCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCATCTTCAATCTACT
*
21755440 TC-CTACCAATATAGGAAGA
65 TCGCCACCAATATAGGAAGA
21755459 TAGGACCTAT
Statistics
Matches: 569, Mismatches: 115, Indels: 39
0.79 0.16 0.05
Matches are distributed among these distances:
86 4 0.01
87 44 0.08
88 327 0.57
89 104 0.18
90 62 0.11
91 28 0.05
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (88 bp):
ATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCATCTTCAATCTACTT
CGCCACCAATATAGGAAGACAAG
Found at i:21755074 original size:133 final size:133
Alignment explanation
Indices: 21754748--21755421 Score: 1084
Period size: 133 Copynumber: 5.1 Consensus size: 133
21754738 CCAAATACAT
* * * * *
21754748 GAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGT
1 GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* ** * * *
21754813 CAATCCACTTCCTACCAATATAGGAAGACCGGATCTGCTACCTTCGATCTACTTC-ACGCCAATA
66 CGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATACCTTCGATCTACTTCGCCACCAATA
***
21754877 CAT
131 TGG
*
21754880 GAATACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
*
21754945 CGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATACCTTCGATCTAATTCGCCACCAATA
66 CGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATACCTTCGATCTACTTCGCCACCAATA
21755010 TGG
131 TGG
*
21755013 GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGT
1 GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* * *
21755078 CAATCCACTTCCTACCAATATAGGAAGATAGGATCT-ACTACCTTCGATCTACTTC-ACGCCAAT
66 CGATCCACTTCCTACCAATATAGGAAGATAGGATCTGA-TACCTTCGATCTACTTCGCCACCAAT
***
21755141 ACAT
130 ATGG
21755145 GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
21755210 CGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATACCTTCGATCTACTTCGCCACCAATA
66 CGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATACCTTCGATCTACTTCGCCACCAATA
21755275 TGG
131 TGG
*
21755278 GAAGACAAGATCTGCTTTCTGTAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* *
21755343 CGATCTACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCGCCACCAATA
66 CGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATACCTTCGATCTACTTCGCCACCAATA
21755408 TGG
131 TGG
21755411 GAAGACAAGAT
1 GAAGACAAGAT
21755422 TTGTATCTTT
Statistics
Matches: 503, Mismatches: 35, Indels: 7
0.92 0.06 0.01
Matches are distributed among these distances:
132 233 0.46
133 270 0.54
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (133 bp):
GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
CGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATACCTTCGATCTACTTCGCCACCAATA
TGG
Found at i:21755194 original size:265 final size:265
Alignment explanation
Indices: 21754748--21755397 Score: 1183
Period size: 265 Copynumber: 2.5 Consensus size: 265
21754738 CCAAATACAT
* * * *
21754748 GAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGT
1 GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGT
**
21754813 CAATCCACTTCCTACCAATATAGGAAGACCGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
66 CAATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
*
21754878 ATGAATACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATC
131 ATGAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATC
21754943 TTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATACCTTCGATCTAATTCGCCACCAA
196 TTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATACCTTCGATCTAATTCGCCACCAA
21755008 TATGG
261 TATGG
21755013 GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGT
1 GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGT
*
21755078 CAATCCACTTCCTACCAATATAGGAAGATAGGATCTACTACCTTCGATCTACTTCACGCCAATAC
66 CAATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
21755143 ATGAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATC
131 ATGAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATC
*
21755208 TTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATACCTTCGATCTACTTCGCCACCAA
196 TTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATACCTTCGATCTAATTCGCCACCAA
21755273 TATGG
261 TATGG
* *
21755278 GAAGACAAGATCTGCTTTCTGTAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGT
* *
21755343 CGATCTACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTC
66 CAATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTC
21755398 GCCACCAATA
Statistics
Matches: 371, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
265 371 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (265 bp):
GAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGT
CAATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
ATGAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATC
TTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGATACCTTCGATCTAATTCGCCACCAA
TATGG
Found at i:21756026 original size:108 final size:108
Alignment explanation
Indices: 21755837--21756032 Score: 329
Period size: 108 Copynumber: 1.8 Consensus size: 108
21755827 GAAAAATGCT
*
21755837 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
21755902 CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGAATAAGA
66 CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGAATAAGA
* * * **
21755945 TGAAAAAGATTATCACAATGGATAAGATGAAAATTTGTTGAGAGCAAAGCTCTAAATGAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
*
21756010 TAATCAAGATAGCAAATTTTGCT
66 CAATCAAGATAGCAAATTTTGCT
21756033 AGAATACAAA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 81 1.00
ACGTcount: A:0.47, C:0.11, G:0.17, T:0.25
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGAATAAGA
Found at i:21757296 original size:62 final size:62
Alignment explanation
Indices: 21757192--21757375 Score: 323
Period size: 62 Copynumber: 3.0 Consensus size: 62
21757182 CTAAACTCGA
* * *
21757192 CGTACTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTGATGCATGAACG
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
*
21757254 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATAAAATGTAATGTTAATGCATGAACG
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
*
21757316 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGAATGAA
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAA
21757376 GAGATACGTG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.41
Consensus pattern (62 bp):
CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
Found at i:21769909 original size:3 final size:3
Alignment explanation
Indices: 21769901--21769928 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
21769891 ACTGATGACA
21769901 ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG A
21769929 AGACAATGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:21773222 original size:58 final size:58
Alignment explanation
Indices: 21773148--21773263 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
21773138 CTTCACAATT
21773148 GAATTCGTATTACGAAACTTTAAAAAATAGAAGAAGAATGACTATTCTGCAGAATCTC
1 GAATTCGTATTACGAAACTTTAAAAAATAGAAGAAGAATGACTATTCTGCAGAATCTC
*
21773206 GAATTCGTATTACGAAACTTTAAGAAATAGAAGAAGAATGACTATTCTGCAGAATCTC
1 GAATTCGTATTACGAAACTTTAAAAAATAGAAGAAGAATGACTATTCTGCAGAATCTC
21773264 TCGTTCAGTG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (58 bp):
GAATTCGTATTACGAAACTTTAAAAAATAGAAGAAGAATGACTATTCTGCAGAATCTC
Found at i:21778336 original size:24 final size:24
Alignment explanation
Indices: 21778286--21778340 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
21778276 GACTGCGCAA
*
21778286 GAAGGAGCTGGTGAGAGCGTTAGT
1 GAAGGAGCTGGTGAGAGCGTGAGT
*
21778310 GAAGGTGCTGGTGAGAGCGCTGA-T
1 GAAGGAGCTGGTGAGAGCG-TGAGT
21778334 GAAGGAG
1 GAAGGAG
21778341 AGAGGAGAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 25 0.93
25 2 0.07
ACGTcount: A:0.25, C:0.09, G:0.47, T:0.18
Consensus pattern (24 bp):
GAAGGAGCTGGTGAGAGCGTGAGT
Found at i:21786769 original size:21 final size:22
Alignment explanation
Indices: 21786740--21786786 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
21786730 CAGAAGGAGT
*
21786740 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
21786762 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
21786783 GAGT
1 GAGT
21786787 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:21789159 original size:61 final size:61
Alignment explanation
Indices: 21789072--21789217 Score: 154
Period size: 61 Copynumber: 2.4 Consensus size: 61
21789062 TCACATCCTA
* * * * ** *
21789072 TCAATTT-GATCCTAAATATAATAAATTTAATAAATTT-AGCCTTCAATGTGTAC-AAATTTTG
1 TCAATTTAG-TCCTAATTCTAAAAAATTTAATAAATTTGA-CCCTCAACATGTACGAAA-TCTG
* * *
21789133 TCATTTTAGTTCTAATTCTAAAAAATTTAATAAATTTGACCCTCAACATTTACGAAATCTG
1 TCAATTTAGTCCTAATTCTAAAAAATTTAATAAATTTGACCCTCAACATGTACGAAATCTG
21789194 TCAATTTAGTCCTAATTCTAAAAA
1 TCAATTTAGTCCTAATTCTAAAAA
21789218 TTAAAAATTA
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
61 65 0.93
62 5 0.07
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (61 bp):
TCAATTTAGTCCTAATTCTAAAAAATTTAATAAATTTGACCCTCAACATGTACGAAATCTG
Found at i:21789538 original size:60 final size:58
Alignment explanation
Indices: 21789412--21789538 Score: 137
Period size: 60 Copynumber: 2.1 Consensus size: 58
21789402 ATGATTTTAA
* * * * * *
21789412 AATTTTTAGAGTTAGGACTAAATTGACAGGTTTGTAAGTATTGAGGGCCAAATTTATT
1 AATTTTTAGAATTAGAACTAAAATGACAAGTTTATAAGCATTGAGGGCCAAATTTATT
* * *
21789470 AATCTTTTTAGAATTAGAACTAAAATGACAAATTTTATAAGCATTGAGGGCTAAATTTGTT
1 AA--TTTTTAGAATTAGAACTAAAATGAC-AAGTTTATAAGCATTGAGGGCCAAATTTATT
21789531 GAATTTTT
1 -AATTTTT
21789539 TAAATTTAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
58 2 0.04
60 27 0.48
61 25 0.45
62 2 0.04
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.39
Consensus pattern (58 bp):
AATTTTTAGAATTAGAACTAAAATGACAAGTTTATAAGCATTGAGGGCCAAATTTATT
Found at i:21794935 original size:14 final size:15
Alignment explanation
Indices: 21794904--21794938 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
21794894 AAGTAAAATT
*
21794904 AAAAAAGAAAAGTTA
1 AAAAAAGAAAAGTAA
21794919 AAAAAAGAAAAG-AA
1 AAAAAAGAAAAGTAA
21794933 AAAAAA
1 AAAAAA
21794939 TTTAAATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (15 bp):
AAAAAAGAAAAGTAA
Found at i:21803775 original size:27 final size:28
Alignment explanation
Indices: 21803720--21803797 Score: 122
Period size: 27 Copynumber: 2.8 Consensus size: 28
21803710 GCGTGTCTCC
*
21803720 TATTTTTTAGATTTTATAGTTTTACCCT
1 TATTTTTTAGATTTTACAGTTTTACCCT
*
21803748 TATTTTTTAGATTCTACAGTTTTA-CCT
1 TATTTTTTAGATTTTACAGTTTTACCCT
*
21803775 TGTTTTTTAGATTTTACAGTTTT
1 TATTTTTTAGATTTTACAGTTTT
21803798 GTCTCTTGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 24 0.52
28 22 0.48
ACGTcount: A:0.21, C:0.10, G:0.09, T:0.60
Consensus pattern (28 bp):
TATTTTTTAGATTTTACAGTTTTACCCT
Found at i:21804565 original size:9 final size:9
Alignment explanation
Indices: 21804546--21804600 Score: 50
Period size: 9 Copynumber: 6.8 Consensus size: 9
21804536 AATTATAAAT
21804546 AATTA-TTA
1 AATTATTTA
21804554 AATTATTTA
1 AATTATTTA
21804563 AATT-TTT-
1 AATTATTTA
21804570 --TTATTTA
1 AATTATTTA
*
21804577 AATTA-CTA
1 AATTATTTA
*
21804585 AACTATTTA
1 AATTATTTA
21804594 AATTATT
1 AATTATT
21804601 GTTGTACGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
5 2 0.05
6 3 0.08
8 14 0.38
9 18 0.49
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (9 bp):
AATTATTTA
Found at i:21805428 original size:17 final size:16
Alignment explanation
Indices: 21805394--21805449 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
21805384 AGTATTGAAT
21805394 TATTAATATCTTAATA
1 TATTAATATCTTAATA
21805410 TATTAA-ATCTTTAA-A
1 TATTAATATC-TTAATA
*
21805425 TA-TAATATTTTAAATA
1 TATTAATATCTT-AATA
*
21805441 TTTTAATAT
1 TATTAATAT
21805450 AAAAATTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 5 0.15
15 10 0.30
16 12 0.36
17 6 0.18
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (16 bp):
TATTAATATCTTAATA
Found at i:21805437 original size:22 final size:22
Alignment explanation
Indices: 21805405--21805459 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
21805395 ATTAATATCT
*
21805405 TAATATATTAAATCTTTAAATA
1 TAATATATTAAATATTTAAATA
* *
21805427 TAATATTTTAAATATTTTAATA
1 TAATATATTAAATATTTAAATA
*
21805449 TAA-AAATTAAA
1 TAATATATTAAA
21805460 AAATTTTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATATATTAAATATTTAAATA
Found at i:21805669 original size:16 final size:16
Alignment explanation
Indices: 21805624--21805661 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
21805614 TTGATTATTG
* *
21805624 ATTACAACTTTATTCT
1 ATTATAACTATATTCT
21805640 ATTATAACTATATTCT
1 ATTATAACTATATTCT
21805656 ATTATA
1 ATTATA
21805662 TTAATATTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTATAACTATATTCT
Found at i:21807317 original size:16 final size:16
Alignment explanation
Indices: 21807272--21807318 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
21807262 TGAATTTCAG
*
21807272 TTTATATTTCTTTTTC
1 TTTATATTTATTTTTC
21807288 TTT-TATTTACTTTTATC
1 TTTATATTTA-TTTT-TC
21807305 TTTAT-TTTATTTTT
1 TTTATATTTATTTTT
21807319 TTCCTCTCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
15 6 0.22
16 11 0.41
17 9 0.33
18 1 0.04
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTATATTTATTTTTC
Found at i:21807546 original size:47 final size:47
Alignment explanation
Indices: 21807488--21807579 Score: 166
Period size: 47 Copynumber: 2.0 Consensus size: 47
21807478 GTATTTACTC
*
21807488 AAACACCTTGTGTGTTTTTCTTGTGACTTTTCTATAGGCGAATTTTA
1 AAACACCTTGTGTGTATTTCTTGTGACTTTTCTATAGGCGAATTTTA
*
21807535 AAACACTTTGTGTGTATTTCTTGTGACTTTTCTATAGGCGAATTT
1 AAACACCTTGTGTGTATTTCTTGTGACTTTTCTATAGGCGAATTT
21807580 GAAATTAAGC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.22, C:0.14, G:0.17, T:0.47
Consensus pattern (47 bp):
AAACACCTTGTGTGTATTTCTTGTGACTTTTCTATAGGCGAATTTTA
Found at i:21812730 original size:23 final size:22
Alignment explanation
Indices: 21812691--21812738 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
21812681 CAGGCTATAA
*
21812691 TTTTTCAATGTTCTA-TTAATGT
1 TTTTTCAAGGTTCTATTTAAT-T
*
21812713 TTTTTTAAGGTTCTTATTTAATT
1 TTTTTCAAGGTTC-TATTTAATT
21812736 TTT
1 TTT
21812739 AATTGTTGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 11 0.50
23 6 0.27
24 5 0.23
ACGTcount: A:0.21, C:0.06, G:0.08, T:0.65
Consensus pattern (22 bp):
TTTTTCAAGGTTCTATTTAATT
Found at i:21812774 original size:23 final size:25
Alignment explanation
Indices: 21812748--21812809 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 25
21812738 TAATTGTTGG
*
21812748 TTTTATTTTTATTTATT-TTC-AAT
1 TTTTATTTTTATCTATTCTTCTAAT
*
21812771 TTTT-TCTTTTATCTCTTCTTCTAAT
1 TTTTAT-TTTTATCTATTCTTCTAAT
21812796 TTTTAATTATTTAT
1 TTTT-ATT-TTTAT
21812810 GTCAAGTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
22 1 0.03
23 13 0.42
24 3 0.10
25 7 0.23
26 1 0.03
27 6 0.19
ACGTcount: A:0.19, C:0.10, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTTATTTTTATCTATTCTTCTAAT
Found at i:21815133 original size:21 final size:19
Alignment explanation
Indices: 21815091--21815134 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
21815081 ATTTAGATCA
* *
21815091 TGAATCAATACAAACTGAT
1 TGAATCAATAAAAAATGAT
21815110 TGAATCAACTAAAAAATCGAT
1 TGAATCAA-TAAAAAAT-GAT
21815131 TGAA
1 TGAA
21815135 CTAGATCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 8 0.38
20 6 0.29
21 7 0.33
ACGTcount: A:0.50, C:0.14, G:0.11, T:0.25
Consensus pattern (19 bp):
TGAATCAATAAAAAATGAT
Found at i:21815734 original size:23 final size:23
Alignment explanation
Indices: 21815616--21815734 Score: 89
Period size: 23 Copynumber: 5.2 Consensus size: 23
21815606 CAATTCTTTG
* * *
21815616 AAGGCATCATAGAATACACCATA
1 AAGGCATCACAAAATACACCACA
* * ** *
21815639 AAGGCAGCACAGAATATGCCATA
1 AAGGCATCACAAAATACACCACA
* * *
21815662 AAGACATCACAAGAA-ACGCAACA
1 AAGGCATCACAA-AATACACCACA
**
21815685 AATACATCACAAAATACGA-CACA
1 AAGGCATCACAAAATAC-ACCACA
21815708 AAGGCATCACAAAATACACCACA
1 AAGGCATCACAAAATACACCACA
21815731 AAGG
1 AAGG
21815735 TTTTCTAAAG
Statistics
Matches: 77, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
22 3 0.04
23 72 0.94
24 2 0.03
ACGTcount: A:0.51, C:0.24, G:0.13, T:0.11
Consensus pattern (23 bp):
AAGGCATCACAAAATACACCACA
Found at i:21823151 original size:27 final size:27
Alignment explanation
Indices: 21823111--21823165 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
21823101 TATAACTTCT
*
21823111 ATCAATTAACCATTTCAAACACATACC
1 ATCAATCAACCATTTCAAACACATACC
*
21823138 ATCAATCAATCATTTCAAACACATACC
1 ATCAATCAACCATTTCAAACACATACC
21823165 A
1 A
21823166 AACATAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.25
Consensus pattern (27 bp):
ATCAATCAACCATTTCAAACACATACC
Found at i:21824064 original size:26 final size:26
Alignment explanation
Indices: 21824035--21824187 Score: 85
Period size: 26 Copynumber: 6.2 Consensus size: 26
21824025 TCCGCTCTCA
21824035 AGCCATATAATAGGAAGCTCACAAAG
1 AGCCATATAATAGGAAGCTCACAAAG
*
21824061 AGCCAT-TAATTGAGAAGCTCACAAAG
1 AGCCATATAATAG-GAAGCTCACAAAG
* *
21824087 AG-C-T-T-ATCAGGAAGCTTATC--TG
1 AGCCATATAAT-AGGAAGCTCA-CAAAG
* *
21824109 -GCTATATAATAGGAAGCTCA-TAAG
1 AGCCATATAATAGGAAGCTCACAAAG
* * *
21824133 AGCCATA-ATTAGGAAGTTCATAAAG
1 AGCCATATAATAGGAAGCTCACAAAG
* * * *
21824158 A-ACTTTTAATCAGGAAGCTCACGAAG
1 AGCCATATAAT-AGGAAGCTCACAAAG
21824184 AGCC
1 AGCC
21824188 TTTAATCAAG
Statistics
Matches: 94, Mismatches: 19, Indels: 27
0.67 0.14 0.19
Matches are distributed among these distances:
21 1 0.01
22 1 0.01
23 10 0.11
24 28 0.30
25 19 0.20
26 34 0.36
27 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (26 bp):
AGCCATATAATAGGAAGCTCACAAAG
Found at i:21825330 original size:30 final size:30
Alignment explanation
Indices: 21825294--21825448 Score: 133
Period size: 30 Copynumber: 5.2 Consensus size: 30
21825284 TATTTTTTTG
*
21825294 CATTTTAACCCCTATACTTTTCAAAATTTA
1 CATTTTAACCCCTAAACTTTTCAAAATTTA
21825324 CATTTTAACCCC-AAACTTTTCTAAAATTTA
1 CATTTTAACCCCTAAACTTTTC-AAAATTTA
* *
21825354 CATTTTGA-CCCTAAAACATTTT-GAAA-TTA
1 CATTTTAACCCCT-AAAC-TTTTCAAAATTTA
* * *
21825383 CATTTTGACCCCTAGACTTTCTCAAAA-TTG
1 CATTTTAACCCCTAAACTTT-TCAAAATTTA
* * * *
21825413 CACTTTGACCCCTAAAC-TCTCAAGAAATTA
1 CATTTTAACCCCTAAACTTTTCAA-AATTTA
21825443 CATTTT
1 CATTTT
21825449 GGCCTATATT
Statistics
Matches: 105, Mismatches: 11, Indels: 18
0.78 0.08 0.13
Matches are distributed among these distances:
28 7 0.07
29 29 0.28
30 61 0.58
31 4 0.04
32 4 0.04
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.38
Consensus pattern (30 bp):
CATTTTAACCCCTAAACTTTTCAAAATTTA
Found at i:21826308 original size:17 final size:17
Alignment explanation
Indices: 21826279--21826324 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
21826269 TTTAAAATCG
21826279 TGTTTCAAAAATTT-TCA
1 TGTTTC-AAAATTTCTCA
*
21826296 TGTCTTCAAAATTTCTCG
1 TGT-TTCAAAATTTCTCA
21826314 TGTTTCAAAAT
1 TGTTTCAAAAT
21826325 AATAATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.30, C:0.15, G:0.09, T:0.46
Consensus pattern (17 bp):
TGTTTCAAAATTTCTCA
Found at i:21826543 original size:21 final size:21
Alignment explanation
Indices: 21826519--21826558 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
21826509 TCATGTTTTC
21826519 GTGTTTTCAAAAAAAATTCTA
1 GTGTTTTCAAAAAAAATTCTA
*
21826540 GTGTTTTTAAAAAAAATTC
1 GTGTTTTCAAAAAAAATTC
21826559 GTGTCTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.40
Consensus pattern (21 bp):
GTGTTTTCAAAAAAAATTCTA
Found at i:21826606 original size:17 final size:17
Alignment explanation
Indices: 21826576--21826760 Score: 65
Period size: 18 Copynumber: 10.5 Consensus size: 17
21826566 AAAATAAATA
* *
21826576 AAAAAATTCATGTTTTC
1 AAAAATTTCGTGTTTTC
21826593 AAAAATTTCGTGTTTTTC
1 AAAAATTTCGTG-TTTTC
* ****
21826611 AAAATTTTTCGTGTCAAA
1 AAAA-ATTTCGTGTTTTC
* *
21826629 AAAAATTTC-TCATGTATC
1 AAAAATTTCGT-GT-TTTC
** *
21826647 GAAAAAAATCATG-TTTC
1 -AAAAATTTCGTGTTTTC
* *
21826664 AAAAATTTTCATGTTTTT
1 AAAAA-TTTCGTGTTTTC
* *
21826682 AAAAGTTTTCGCGTTTTC
1 AAAA-ATTTCGTGTTTTC
*
21826700 AAAAAAATCTCGTG-TTTC
1 --AAAAATTTCGTGTTTTC
*
21826718 -AAATTTTCGTGTTTTC
1 AAAAATTTCGTGTTTTC
21826734 AAAAATTTC-TCGTATTTC
1 AAAAATTTCGT-GT-TTTC
*
21826752 AAAATTTTC
1 AAAAATTTC
21826761 ACTTTTTGCG
Statistics
Matches: 123, Mismatches: 30, Indels: 29
0.68 0.16 0.16
Matches are distributed among these distances:
15 9 0.07
16 11 0.09
17 32 0.26
18 47 0.38
19 19 0.15
20 5 0.04
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (17 bp):
AAAAATTTCGTGTTTTC
Found at i:21826732 original size:34 final size:35
Alignment explanation
Indices: 21826682--21826760 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 35
21826672 TCATGTTTTT
*
21826682 AAAAGTTTTCGCGTTTTCAAAAAAATCTCGTGTTTC
1 AAAA-TTTTCGCGTTTTCAAAAAAATCTCGTATTTC
* **
21826718 -AAATTTTCGTGTTTTCAAAAATTTCTCGTATTTC
1 AAAATTTTCGCGTTTTCAAAAAAATCTCGTATTTC
21826752 AAAATTTTC
1 AAAATTTTC
21826761 ACTTTTTGCG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 27 0.71
35 11 0.29
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.44
Consensus pattern (35 bp):
AAAATTTTCGCGTTTTCAAAAAAATCTCGTATTTC
Found at i:21826873 original size:17 final size:18
Alignment explanation
Indices: 21826844--21827230 Score: 185
Period size: 17 Copynumber: 22.3 Consensus size: 18
21826834 TAAAAAAATA
*
21826844 GTGTTTCAAAAAATGTGTC
1 GTGTTTCTAAAAAT-TGTC
*
21826863 GTGTTT-TAAAAATTTTC
1 GTGTTTCTAAAAATTGTC
21826880 GTGTTTCT-AAAATT-TCC
1 GTGTTTCTAAAAATTGT-C
* *
21826897 CTGTTT-TAAAAATTCTC
1 GTGTTTCTAAAAATTGTC
* * *
21826914 GT-ATTCCAAAAAATGTC
1 GTGTTTCTAAAAATTGTC
*
21826931 GTGTTT-TAAAAATTTTC
1 GTGTTTCTAAAAATTGTC
21826948 GTGTTTCT-AAAATT-TCC
1 GTGTTTCTAAAAATTGT-C
* **
21826965 CTGTTT-TAAAAATTCCC
1 GTGTTTCTAAAAATTGTC
* *
21826982 GT-ATTCCAAAAATTGTC
1 GTGTTTCTAAAAATTGTC
*
21826999 GTGTTT-TAAAAATTTTC
1 GTGTTTCTAAAAATTGTC
*
21827016 GTATTTCT-AAAATT-TCC
1 GTGTTTCTAAAAATTGT-C
* **
21827033 CTGTTT-TAAAAATTCCC
1 GTGTTTCTAAAAATTGTC
* * * * *
21827050 GTATTCCAAAAAAATGTA
1 GTGTTTCTAAAAATTGTC
*
21827068 GTGTTT-TAAAAATTTTC
1 GTGTTTCTAAAAATTGTC
21827085 GTGTTTCT-AAAATT-TCC
1 GTGTTTCTAAAAATTGT-C
* *
21827102 CTGTTT-TAAAAATTCTC
1 GTGTTTCTAAAAATTGTC
* *
21827119 GT-ATTCCAAAAATTGTC
1 GTGTTTCTAAAAATTGTC
21827136 GTGTTT-TAAAAACTT-TC
1 GTGTTTCTAAAAA-TTGTC
* * *
21827153 TTGTTT-TTAAAATTCTC
1 GTGTTTCTAAAAATTGTC
* *
21827170 GTATTTC-AAAAGTT-TCC
1 GTGTTTCTAAAAATTGT-C
* *
21827187 GTGTTTCAAAAAAAAATTCTC
1 GTGTTTC---TAAAAATTGTC
*
21827208 GTGTTTC-AAAAATTTTC
1 GTGTTTCTAAAAATTGTC
21827225 GTGTTT
1 GTGTTT
21827231 TTTAATTGTA
Statistics
Matches: 280, Mismatches: 56, Indels: 66
0.70 0.14 0.16
Matches are distributed among these distances:
16 17 0.06
17 212 0.76
18 30 0.11
19 6 0.02
21 14 0.05
22 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (18 bp):
GTGTTTCTAAAAATTGTC
Found at i:21826902 original size:34 final size:33
Alignment explanation
Indices: 21826864--21827166 Score: 273
Period size: 34 Copynumber: 8.9 Consensus size: 33
21826854 AAATGTGTCG
*
21826864 TGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCC
1 TGTTTTAAAAATTTTCGTATTTCTAAAATTT-CC
* * * * *
21826898 TGTTTTAAAAATTCTCGTATTCCAAAAAATGTCG
1 TGTTTTAAAAATTTTCGTATTTC-TAAAATTTCC
*
21826932 TGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCC
1 TGTTTTAAAAATTTTCGTATTTCTAAAATTT-CC
** * * *
21826966 TGTTTTAAAAATTCCCGTATTCCAAAAATTGTCG
1 TGTTTTAAAAATTTTCGTATTTCTAAAATT-TCC
21827000 TGTTTTAAAAATTTTCGTATTTCTAAAATTTCCC
1 TGTTTTAAAAATTTTCGTATTTCTAAAATTT-CC
** * * * **
21827034 TGTTTTAAAAATTCCCGTATTCCAAAAAAATGTAG
1 TGTTTTAAAAATTTTCGTATTTC--TAAAATTTCC
*
21827069 TGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCC
1 TGTTTTAAAAATTTTCGTATTTCTAAAATTT-CC
* * * *
21827103 TGTTTTAAAAATTCTCGTATTCCAAAAATTGTCG
1 TGTTTTAAAAATTTTCGTATTTCTAAAATT-TCC
* * * *
21827137 TGTTTTAAAAACTTTCTTGTTTTTAAAATT
1 TGTTTTAAAAATTTTCGTATTTCTAAAATT
21827167 CTCGTATTTC
Statistics
Matches: 211, Mismatches: 50, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
33 13 0.06
34 165 0.78
35 27 0.13
36 6 0.03
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (33 bp):
TGTTTTAAAAATTTTCGTATTTCTAAAATTTCC
Found at i:21826939 original size:68 final size:68
Alignment explanation
Indices: 21826850--21827166 Score: 526
Period size: 68 Copynumber: 4.6 Consensus size: 68
21826840 AATAGTGTTT
*
21826850 CAAAAAATGTGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAAATTCTCG
1 CAAAAAA--TGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAAATTCCCG
21826915 TATTC
64 TATTC
21826920 CAAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAAATTCCCGTA
1 CAAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAAATTCCCGTA
21826985 TTC
66 TTC
* *
21826988 CAAAAATTGTCGTGTTTTAAAAATTTTCGTATTTCTAAAATTTCCCTGTTTTAAAAATTCCCGTA
1 CAAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAAATTCCCGTA
21827053 TTC
66 TTC
* *
21827056 CAAAAAAATGTAGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAAATTCTCGT
1 C-AAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAAATTCCCGT
21827121 ATTC
65 ATTC
* * * *
21827125 CAAAAATTGTCGTGTTTTAAAAACTTTCTTGTTTTTAAAATT
1 CAAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATT
21827167 CTCGTATTTC
Statistics
Matches: 234, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
68 163 0.70
69 64 0.27
70 7 0.03
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (68 bp):
CAAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAAATTCCCGTA
TTC
Found at i:21827197 original size:68 final size:67
Alignment explanation
Indices: 21826852--21827230 Score: 483
Period size: 68 Copynumber: 5.5 Consensus size: 67
21826842 TAGTGTTTCA
*
21826852 AAAAATGTGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAAATTCTCGTA
1 AAAAAT-TGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAATTTC-CGTA
21826917 TTCC
64 TTCC
* *
21826921 AAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAAATTCCCGTAT
1 AAAAATTGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTT-AAAATTTCCGTAT
21826986 TCC
65 TCC
* *
21826989 AAAAATTGTCGTGTTTTAAAAATTTTCGTATTTCTAAAATTTCCCTGTTTTAAAAATTCCCGTAT
1 AAAAATTGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTT-AAAATTTCCGTAT
21827054 TCC
65 TCC
* * *
21827057 AAAAAAATGTAGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAAATTCTCGTA
1 -AAAAATTGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAATTTC-CGTA
21827122 TTCC
64 TTCC
* * * *
21827126 AAAAATTGTCGTGTTTTAAAAACTTTCTTGTTTTTAAAA-TTCTC-GTATTTCAAAAGTTTCCGT
1 AAAAATTGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGT-TTT-AAAA-TTTCCGT
* *
21827189 GTTTCAAAA
63 -ATTC---C
* *
21827198 AAAAATTCTCGTGTTTCAAAAATTTTCGTGTTT
1 AAAAATTGTCGTGTTTTAAAAATTTTCGTGTTT
21827231 TTTAATTGTA
Statistics
Matches: 277, Mismatches: 23, Indels: 17
0.87 0.07 0.05
Matches are distributed among these distances:
66 2 0.01
67 7 0.03
68 166 0.60
69 73 0.26
72 29 0.10
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (67 bp):
AAAAATTGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTCCCTGTTTTAAAATTTCCGTATT
CC
Found at i:21833842 original size:16 final size:15
Alignment explanation
Indices: 21833802--21833839 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
21833792 TCACGCTGAG
21833802 GTATTTTTAATTTAT
1 GTATTTTTAATTTAT
21833817 GTATTTTTAATTTAT
1 GTATTTTTAATTTAT
21833832 GTATTTTT
1 GTATTTTT
21833840 TAAAAAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (15 bp):
GTATTTTTAATTTAT
Found at i:21834017 original size:74 final size:74
Alignment explanation
Indices: 21833817--21834800 Score: 744
Period size: 74 Copynumber: 12.9 Consensus size: 74
21833807 TTTAATTTAT
* *
21833817 GTATTTTTAATTT-ATGTATTTTTTAAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCG
1 GTATTTTTAATTTCA-GTCTTTTTT--TAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCG
21833881 GGTCACGCTGAG
63 GGTCACGCTGAG
* * *
21833893 GTA-TTTTAATTT-ATGCCTTTTTTTAAAATCAACTCATAATACAGAGGTGAGTTGAGTCTTGGG
1 GTATTTTTAATTTCA-GTCTTTTTTTAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGG
21833956 TCACGCTGAG
65 TCACGCTGAG
*
21833966 GTGTTTTTAATTTCAGTCTTTTTTTAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGT
1 GTATTTTTAATTTCAGTCTTTTTTTAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGT
21834031 CACGCTGAG
66 CACGCTGAG
*
21834040 ATATTTTTAATTTC-GATCTTTTTTTTAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCG
1 GTATTTTTAATTTCAG-TC-TTTTTTT-AAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCG
21834104 GGTCACGCTGAG
63 GGTCACGCTGAG
* *
21834116 GTATTTTTAAATTCAGTCTTTTTTTTTAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGG
1 GTATTTTTAATTTCAGTC-TTTTTTTAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGG
*
21834181 TCACGCTGAT
65 TCACGCTGAG
* * * *
21834191 GTATTTTTAATTCCTGTCTTTTTTT-AAATCAACTCATAATATGAGAGGTGAGTTGAGCCTCAGG
1 GTATTTTTAATTTCAGTCTTTTTTTAAAATCAACTCATAATA-CAGAGGTGAGTTGAGCCTCGGG
21834255 TCACGCTGAG
65 TCACGCTGAG
** * * *
21834265 GTATTTCTTTTAAATTTTTGTTTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 GTA--T-TTTT-AATTTCAG-TCTTTTTTT----AAAATCAACTCATAATAC-AGAGGTGAGTTG
** * *
21834330 AGCCTCGGACCATGCCGAG
56 AGCCTCGGGTCACGCTGAG
*** * * *
21834349 GTATTTCTTTTAAATTT-ATGT-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCC
1 GTA--T-TTTT-AATTTCA-GTCTTTTTTTAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCC
** *
21834412 TCGGACCATGCTGAG
60 TCGGGTCACGCTGAG
*** * *
21834427 GTATTTCTTTTAAATTT-ATGT-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 GTA--T-TTTT-AATTTCA-GTCTTTTTTTAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCC
** * * *
21834490 TCGGACCATGCCGAT
60 TCGGGTCACGCTGAG
* *** * *
21834505 GTATTTCTTTTAAATTTCTGT-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 GTA--T-TTTT-AATTTCAGTCTTTT-TTTAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCC
* ** * *
21834569 TTGGACCATGCCGAG
60 TCGGGTCACGCTGAG
* ** * *
21834584 GTATTTCTTTTAAATTTC--TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 GTA--T-TTTT-AATTTCAGTCTTTTTTTAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCT
*
21834647 CGGGTCACGCCGAG
61 CGGGTCACGCTGAG
* ** * * *
21834661 GTATTTTTCAA-TTCA-TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 GTATTTTT-AATTTCAGTCTTTTTTTAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGG
21834724 G-CACATG-TCGAG
64 GTCAC--GCT-GAG
** * * ** * * *
21834736 GTATTTTCGATTT--TTGTTTTTCGAAGATCAACTCATAATCCAAGAGGTGAGTTGAGTCTCGGG
1 GTATTTTTAATTTCAGTCTTTTTTTAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGG
21834799 TC
65 TC
21834801 GCACGCCGAG
Statistics
Matches: 816, Mismatches: 63, Indels: 59
0.87 0.07 0.06
Matches are distributed among these distances:
73 72 0.09
74 215 0.26
75 103 0.13
76 75 0.09
77 56 0.07
78 156 0.19
79 76 0.09
82 4 0.00
83 1 0.00
84 58 0.07
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (74 bp):
GTATTTTTAATTTCAGTCTTTTTTTAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGT
CACGCTGAG
Found at i:21834419 original size:78 final size:78
Alignment explanation
Indices: 21834216--21834741 Score: 742
Period size: 78 Copynumber: 6.7 Consensus size: 78
21834206 GTCTTTTTTT
* ** * * *
21834216 AAATCAACTCATAATATGAGAGGTGAGTTGAGCCTCAGG-TCACGCTGAGGTATTTCTTTTAAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACCATGCCGAGGTATTTCTTTTAAAT
*
21834280 TTTTGTTTTTTTTTTCAAAA
65 TTATG-----TTTTTC-AAA
21834300 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAATT
21834365 TATGTTTTTCAAA
66 TATGTTTTTCAAA
* *
21834378 AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGACCATGCTGAGGTATTTCTTTTAAATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAATT
21834443 TATGTTTTTCAAA
66 TATGTTTTTCAAA
*
21834456 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGATGTATTTCTTTTAAATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAATT
*
21834521 TCTGTTTTTCAAAA
66 TATGTTTTTC-AAA
*
21834535 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGACCATGCCGAGGTATTTCTTTTAAATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAATT
*
21834600 TCTGTTTTTC-AA
66 TATGTTTTTCAAA
** * *
21834612 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTA--T-TTTTCAATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAATT
*
21834674 CATGTTTTTC-AA
66 TATGTTTTTCAAA
*
21834686 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACATGTCGAGGTATTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGAC-CATGCCGAGGTATTT
21834742 TCGATTTTTG
Statistics
Matches: 411, Mismatches: 25, Indels: 19
0.90 0.05 0.04
Matches are distributed among these distances:
74 54 0.13
75 13 0.03
77 51 0.12
78 150 0.36
79 82 0.20
83 2 0.00
84 59 0.14
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.35
Consensus pattern (78 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAATT
TATGTTTTTCAAA
Found at i:21834509 original size:156 final size:153
Alignment explanation
Indices: 21833836--21834721 Score: 808
Period size: 156 Copynumber: 5.8 Consensus size: 153
21833826 ATTTATGTAT
* * * ** *
21833836 TTTTTAAAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA-TTT
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCACGCCGAGGTATTTT
* ** * * * * **
21833899 T-AATTTATGCCTTTTT-TTAAAATCAACTCATAATAC-AGAGGTGAGTTGAGTCTTGGGTCACG
66 TAAATTCATG--TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCACG
*
21833961 CTGAGG--TGT-TTTT-AATTTCA-G
129 CTGAGGTATTTCTTTTAAATTT-ATG
*** * * ** * *
21833982 TCTTTTTTTAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGATATTT
1 T-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCACGCCGAGGTATTT
* * ** * * **
21834046 TTAATTTCGATCTTTTTTTTAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCAC
65 TTAAATTC-AT-GTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCAC
* *
21834110 GCTGAGGTA--T-TTTTAAATTCAGTC
128 GCTGAGGTATTTCTTTTAAATTTA-TG
**** * * ** * *
21834134 TTTTTTTTTAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGATGTATTTT
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCACGCCGAGGTATTTT
* *** * ** *
21834198 T-AATTCCTGTCTTTT-TTTAAATCAACTCATAATATGAGAGGTGAGTTGAGCCTCAGG-TCACG
66 TAAATTCATGT-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACCACG
*
21834260 CTGAGGTATTTCTTTTAAATTTTTG
129 CTGAGGTATTTCTTTTAAATTTATG
*
21834285 TTTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGG
1 -----TTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCACGCCGAGG
* *
21834350 TATTTCTTTTAAATTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCG
60 TA--T-TTTTAAATTCATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
21834415 GACCATGCTGAGGTATTTCTTTTAAATTTATG
122 GACCACGCTGAGGTATTTCTTTTAAATTTATG
* *
21834447 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGATGTATTTC
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCACGCCGAGGTA--T-
*
21834512 TTTTAAATTTC-TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGACC
63 TTTTAAA-TTCATGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACC
* * *
21834576 ATGCCGAGGTATTTCTTTTAAATTTCTG
126 ACGCTGAGGTATTTCTTTTAAATTTATG
**
21834604 TTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTATTTT
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCACGCCGAGGTATTTT
*
21834668 TCAATTCATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66 TAAATTCATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
21834722 AGGCACATGT
Statistics
Matches: 648, Mismatches: 59, Indels: 61
0.84 0.08 0.08
Matches are distributed among these distances:
146 1 0.00
147 55 0.08
148 22 0.03
149 44 0.07
150 63 0.10
151 104 0.16
152 13 0.02
153 14 0.02
154 1 0.00
156 128 0.20
157 97 0.15
158 29 0.04
160 1 0.00
161 10 0.02
162 66 0.10
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (153 bp):
TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCACGCCGAGGTATTTT
TAAATTCATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCACGCT
GAGGTATTTCTTTTAAATTTATG
Found at i:21834578 original size:79 final size:78
Alignment explanation
Indices: 21834066--21834741 Score: 735
Period size: 78 Copynumber: 8.7 Consensus size: 78
21834056 TCTTTTTTTT
* * ** * *
21834066 AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA--T-TTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
*
21834127 TTCAGTCT-TTTTT-T
66 TT---TCTGTTTTTCA
** * * ** * * *
21834141 TTAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGATGTA--T-TTTT-AA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
* *
21834201 TTCCTGTCTTTT-T
66 TTTCTGT-TTTTCA
** * ** * * *
21834214 TTAAATCAACTCATAATATGAGAGGTGAGTTGAGCCTCAGG-TCACGCTGAGGTATTTCTTTTAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACCATGCCGAGGTATTTCTTTTAA
*
21834278 ATTTTTGTTTTTTTTTTCAA
65 ATTTCTG-----TTTTTC-A
21834298 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
*
21834363 TTTATGTTTTTCA
66 TTTCTGTTTTTCA
* *
21834376 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGACCATGCTGAGGTATTTCTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
*
21834441 TTTATGTTTTTCA
66 TTTCTGTTTTTCA
*
21834454 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGATGTATTTCTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
21834519 TTTCTGTTTTTCAA
66 TTTCTGTTTTTC-A
*
21834533 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGACCATGCCGAGGTATTTCTTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
21834598 TTTCTGTTTTTC-
66 TTTCTGTTTTTCA
** * *
21834610 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTA--T-TTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
21834672 -TTCATGTTTTTC-
66 TTTC-TGTTTTTCA
*
21834684 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACATGTCGAGGTATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGAC-CATGCCGAGGTATTT
21834742 TCGATTTTTG
Statistics
Matches: 545, Mismatches: 34, Indels: 42
0.88 0.05 0.07
Matches are distributed among these distances:
71 2 0.00
72 1 0.00
73 26 0.05
74 86 0.16
75 70 0.13
76 1 0.00
77 55 0.10
78 156 0.29
79 82 0.15
82 4 0.01
83 3 0.01
84 59 0.11
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (78 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATTTCTTTTAAA
TTTCTGTTTTTCA
Done.