Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 58 of 208
Found at i:22110422 original size:24 final size:23
Alignment explanation
Indices: 22110395--22110446 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
22110385 TATAAATAAA
*
22110395 TTATGACAAAAAATTATAATATTT
1 TTAT-ACAAAAAAGTATAATATTT
* * *
22110419 TTATATAAATAAGTATATTATTT
1 TTATACAAAAAAGTATAATATTT
22110442 TTATA
1 TTATA
22110447 ATGTATAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (23 bp):
TTATACAAAAAAGTATAATATTT
Found at i:22111709 original size:252 final size:252
Alignment explanation
Indices: 22111264--22111769 Score: 985
Period size: 252 Copynumber: 2.0 Consensus size: 252
22111254 TCAATCACCA
22111264 ATCTAGTTCTAAAAACTTTGGTTTTGATCTAGATCTCTTCCGTCTTTGGCTTTTAGAGGAGATAA
1 ATCTAGTTCTAAAAACTTTGGTTTTGATCTAGATCTCTTCCGTCTTTGGCTTTTAGAGGAGATAA
22111329 TTCAGAAGATCGTTGGGATACCTCCACCTCATTCAGCAACCGGGGTTGACAAGATTATTTGGAGA
66 TTCAGAAGATCGTTGGGATACCTCCACCTCATTCAGCAACCGGGGTTGACAAGATTATTTGGAGA
22111394 GGTACTTCGACTTGTGGTTTCTCCCTTAAAAATGCTTATATGAAGCTTCAGGAGGGATCGTGGAA
131 GGTACTTCGACTTGTGGTTTCTCCCTTAAAAATGCTTATATGAAGCTTCAGGAGGGATCGTGGAA
*
22111459 TCTGAAAGAGCCTATGTGAAGAATTTCATGGAAATTTCAAGGACCCCAATAGATTAG
196 TCCGAAAGAGCCTATGTGAAGAATTTCATGGAAATTTCAAGGACCCCAATAGATTAG
22111516 ATCTAGTTCTAAAAACTTTGGTTTTGATCTAGATCTCTTCCGTCTTTGGCTTTTAGAGGAGATAA
1 ATCTAGTTCTAAAAACTTTGGTTTTGATCTAGATCTCTTCCGTCTTTGGCTTTTAGAGGAGATAA
* *
22111581 TTCAGAAGATCGTTGGGATACCTCCACCTTATTCGGCAACCGGGGTTGACAAGATTATTTGGAGA
66 TTCAGAAGATCGTTGGGATACCTCCACCTCATTCAGCAACCGGGGTTGACAAGATTATTTGGAGA
22111646 GGTACTTCGACTTGTGGTTTCTCCCTTAAAAATGCTTATATGAAGCTTCAGGAGGGATCGTGGAA
131 GGTACTTCGACTTGTGGTTTCTCCCTTAAAAATGCTTATATGAAGCTTCAGGAGGGATCGTGGAA
22111711 TCCGAAAGAGCCTATGTGAAGAATTTCATGGAAATTTCAAGGACCCCAATAGATTAG
196 TCCGAAAGAGCCTATGTGAAGAATTTCATGGAAATTTCAAGGACCCCAATAGATTAG
22111768 AT
1 AT
22111770 TATTTATTTG
Statistics
Matches: 251, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
252 251 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (252 bp):
ATCTAGTTCTAAAAACTTTGGTTTTGATCTAGATCTCTTCCGTCTTTGGCTTTTAGAGGAGATAA
TTCAGAAGATCGTTGGGATACCTCCACCTCATTCAGCAACCGGGGTTGACAAGATTATTTGGAGA
GGTACTTCGACTTGTGGTTTCTCCCTTAAAAATGCTTATATGAAGCTTCAGGAGGGATCGTGGAA
TCCGAAAGAGCCTATGTGAAGAATTTCATGGAAATTTCAAGGACCCCAATAGATTAG
Found at i:22118695 original size:20 final size:20
Alignment explanation
Indices: 22118670--22118709 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
22118660 AATATTTTTC
*
22118670 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
22118690 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
22118710 TTATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:22118716 original size:34 final size:34
Alignment explanation
Indices: 22118658--22118723 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
22118648 CAAACACCAG
* *
22118658 AAAATATTTTTCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTAC-GAAAAGT
*
22118693 AAAACATTTTCCAG-AAATTATTTTACGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACGAAAA
22118724 ATATTTTACT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 5 0.18
34 11 0.39
35 12 0.43
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.35
Consensus pattern (34 bp):
AAAACATTTTCCAGTAAATCATTTTACGAAAAGT
Found at i:22120360 original size:20 final size:20
Alignment explanation
Indices: 22120309--22120362 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
22120299 AGGATGGTTA
22120309 ATTATTATTTCTATTTAAACT
1 ATTATTATTT-TATTTAAACT
*
22120330 -TGT-TTATTTTTATTTAAGCT
1 AT-TATTA-TTTTATTTAAACT
22120350 ATTATTATTTTAT
1 ATTATTATTTTAT
22120363 GTTTAATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
20 20 0.71
21 8 0.29
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.63
Consensus pattern (20 bp):
ATTATTATTTTATTTAAACT
Found at i:22123903 original size:11 final size:11
Alignment explanation
Indices: 22123887--22123918 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
22123877 AGAGAGAAAG
22123887 AAAAGGAAAAT
1 AAAAGGAAAAT
22123898 AAAAGGAAAAT
1 AAAAGGAAAAT
*
22123909 AAAAAGAAAA
1 AAAAGGAAAA
22123919 GGGAGAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.06
Consensus pattern (11 bp):
AAAAGGAAAAT
Found at i:22124053 original size:2 final size:2
Alignment explanation
Indices: 22124046--22124073 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22124036 CAATTTCTTT
22124046 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
22124074 GAAACTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:22136619 original size:65 final size:65
Alignment explanation
Indices: 22136550--22136676 Score: 209
Period size: 65 Copynumber: 2.0 Consensus size: 65
22136540 AATAGTAAAT
* *
22136550 ATATATTTATAACCCTAAACCTCGGATTATAAAGAGGTGCTAATGTAATAAACTTAGTTAAAAAA
1 ATATATTTATAACCCTAAACCTCGAATCATAAAGAGGTGCTAATGTAATAAACTTAGTTAAAAAA
* * *
22136615 ATATATTTATAATCCTAAACCTCGAATCATAAAGAGGTGTTGATGTAATAAACTTAGTTAAA
1 ATATATTTATAACCCTAAACCTCGAATCATAAAGAGGTGCTAATGTAATAAACTTAGTTAAA
22136677 CTAAGATGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (65 bp):
ATATATTTATAACCCTAAACCTCGAATCATAAAGAGGTGCTAATGTAATAAACTTAGTTAAAAAA
Found at i:22140832 original size:16 final size:17
Alignment explanation
Indices: 22140808--22140841 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
22140798 AGATGAAATC
*
22140808 TTTATTTAAT-TTAATT
1 TTTACTTAATGTTAATT
22140824 TTTACTTAATGTTAATT
1 TTTACTTAATGTTAATT
22140841 T
1 T
22140842 AAAATATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (17 bp):
TTTACTTAATGTTAATT
Found at i:22167797 original size:14 final size:14
Alignment explanation
Indices: 22167778--22167804 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22167768 ATAATCTGTC
22167778 GTTGTTGCCTTACT
1 GTTGTTGCCTTACT
22167792 GTTGTTGCCTTAC
1 GTTGTTGCCTTAC
22167805 AGTTCCATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.22, G:0.22, T:0.48
Consensus pattern (14 bp):
GTTGTTGCCTTACT
Found at i:22168005 original size:12 final size:12
Alignment explanation
Indices: 22167988--22168017 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
22167978 TATTTGAAAT
*
22167988 TTTATATTCTGG
1 TTTATAATCTGG
22168000 TTTATAATCTGG
1 TTTATAATCTGG
22168012 TTTATA
1 TTTATA
22168018 CCTTGTTGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.07, G:0.13, T:0.57
Consensus pattern (12 bp):
TTTATAATCTGG
Found at i:22169592 original size:13 final size:13
Alignment explanation
Indices: 22169574--22169598 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22169564 GGCCGGGTCT
22169574 GGACAAAATTTCA
1 GGACAAAATTTCA
22169587 GGACAAAATTTC
1 GGACAAAATTTC
22169599 GGGTCGGGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (13 bp):
GGACAAAATTTCA
Found at i:22171252 original size:23 final size:23
Alignment explanation
Indices: 22171225--22171346 Score: 181
Period size: 23 Copynumber: 5.3 Consensus size: 23
22171215 AGTGTTATTG
*
22171225 ATCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
22171248 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
22171271 AACAGTGCTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
22171294 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
22171317 AACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
22171340 ATCAGTG
1 ATCAGTG
22171347 TTGCACTTAT
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 86 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:22171297 original size:46 final size:46
Alignment explanation
Indices: 22171227--22171346 Score: 204
Period size: 46 Copynumber: 2.6 Consensus size: 46
22171217 TGTTATTGAT
*
22171227 CAGTGGTAGCTTCGGCTACGTTTCAGTGGTAGCTTCGGCTACATAA
1 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATAA
* *
22171273 CAGTGCTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATAA
1 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATAA
*
22171319 CAGTGGTAGCTTCGGCTACATATCAGTG
1 CAGTGGTAGCTTCGGCTACATTTCAGTG
22171347 TTGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.31
Consensus pattern (46 bp):
CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATAA
Found at i:22174371 original size:46 final size:46
Alignment explanation
Indices: 22174296--22174434 Score: 174
Period size: 46 Copynumber: 3.0 Consensus size: 46
22174286 ACAATGCTAT
*
22174296 AACTCAGTATGGTTTT-ATTCACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCATT-ACTGGAATACCATACCTACTTTTCAC
* * *
22174342 AACTCAGTATGGTTTTCCTTACTGGAATACCATACCTACGTTCCAC
1 AACTCAGTATGGTTTTCATTACTGGAATACCATACCTACTTTTCAC
* * * *
22174388 AACTCAGTATAGTTTTCTTTTCT-GAACTATCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCATTACTGGAA-TACCATACCTACTTTTCAC
22174434 A
1 A
22174435 CTTTGCCATG
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
45 3 0.04
46 76 0.94
47 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.37
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCATTACTGGAATACCATACCTACTTTTCAC
Found at i:22176592 original size:25 final size:25
Alignment explanation
Indices: 22176564--22176626 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
22176554 TACGAGCACT
*
22176564 TAACGGGAAGCTC-TTTCAAGCCATA
1 TAACGGGAAGCTCATGT-AAGCCATA
* *
22176589 TAACGGGAAGCTCATGTGAGCCATG
1 TAACGGGAAGCTCATGTAAGCCATA
22176614 TAACGGGAAGCTC
1 TAACGGGAAGCTC
22176627 CGGAGAACTA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 32 0.94
26 2 0.06
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (25 bp):
TAACGGGAAGCTCATGTAAGCCATA
Found at i:22185889 original size:18 final size:17
Alignment explanation
Indices: 22185866--22185899 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
22185856 TTTTTTGATC
22185866 AAATATATATTATATATT
1 AAATATATATTA-ATATT
22185884 AAATATATATTAATAT
1 AAATATATATTAATAT
22185900 GGGCCGGGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AAATATATATTAATATT
Found at i:22187663 original size:15 final size:15
Alignment explanation
Indices: 22187638--22187670 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
22187628 TATTATTTAA
22187638 ATTTTAAAA-TTATT
1 ATTTTAAAATTTATT
22187652 ATTTTCAAAATTTATT
1 ATTTT-AAAATTTATT
22187668 ATT
1 ATT
22187671 AAAATAAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 4 0.24
16 8 0.47
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTTAAAATTTATT
Found at i:22188711 original size:27 final size:27
Alignment explanation
Indices: 22188673--22188736 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
22188663 TAGGGACTAG
*
22188673 GGAGGCACCATTAAAAGTGCCTCATAA
1 GGAGGCGCCATTAAAAGTGCCTCATAA
*
22188700 GGAGGCGCCATTAAAAGTGCCTCATAG
1 GGAGGCGCCATTAAAAGTGCCTCATAA
22188727 GGAGGCGCCA
1 GGAGGCGCCA
22188737 ATGGGTAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.31, C:0.23, G:0.30, T:0.16
Consensus pattern (27 bp):
GGAGGCGCCATTAAAAGTGCCTCATAA
Found at i:22188790 original size:19 final size:19
Alignment explanation
Indices: 22188741--22188906 Score: 124
Period size: 19 Copynumber: 8.3 Consensus size: 19
22188731 GCGCCAATGG
*
22188741 GTAATTTTGTATGTATATT
1 GTAATTTTGTATGAATATT
22188760 GTAACTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
22188781 ATAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
22188800 GTAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
* * *
22188823 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
*
22188843 GT-ATTTTGTATGAATAGT
1 GTAATTTTGTATGAATATT
22188861 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
22188882 GTAATTTTTTATGAATATT
1 GTAATTTTGTATGAATATT
22188901 GTAATT
1 GTAATT
22188907 ATTTTATAAT
Statistics
Matches: 118, Mismatches: 14, Indels: 30
0.73 0.09 0.19
Matches are distributed among these distances:
17 5 0.04
18 3 0.03
19 48 0.41
20 13 0.11
21 37 0.31
22 4 0.03
23 4 0.03
24 3 0.03
25 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.14, T:0.55
Consensus pattern (19 bp):
GTAATTTTGTATGAATATT
Found at i:22188919 original size:101 final size:101
Alignment explanation
Indices: 22188744--22189001 Score: 399
Period size: 101 Copynumber: 2.5 Consensus size: 101
22188734 CCAATGGGTA
* * * *
22188744 ATTTTGTATGTATATTGTAACTTTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTATT
1 ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
22188809 TTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
66 TTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
*
22188845 ATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
1 ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
*
22188910 TTATAATTAATTTTGTATTTATAGTTTTTGATTAGT
66 TTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
22188946 ATTTTGTATGAATATTGTAATTGTATAATTTTGTATGAATATTGTAATTATTTTAT
1 ATTTTGTATGAATATTGTAA---T-T--TTTTGTATGAATATTGTAATT-TTTTAT
22189002 AATTAATTTT
Statistics
Matches: 143, Mismatches: 7, Indels: 7
0.91 0.04 0.04
Matches are distributed among these distances:
101 114 0.80
104 1 0.01
105 1 0.01
107 21 0.15
108 6 0.04
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (101 bp):
ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
TTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
Found at i:22188983 original size:88 final size:87
Alignment explanation
Indices: 22188883--22189161 Score: 446
Period size: 88 Copynumber: 3.3 Consensus size: 87
22188873 ATGAATATTG
*
22188883 TAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTAT
1 TAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTAT
22188948 TTTGTATGAATATTGTAATTGTA
66 TTTGTATGAATATTGTAATT-TA
*
22188971 TAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGGTTAGTAT
1 TAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTAT
22189036 TTTGTATG-A-A---T-A-TTA
66 TTTGTATGAATATTGTAATTTA
* *
22189051 TAATGTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTAGATTAGTAT
1 TAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTAT
*
22189116 TTTGTATGAATATTGTAATTTTG
66 TTTGTATGAATATTGTAA-TTTA
22189139 TAATTTTGTATGAATATTGTAAT
1 TAATTTTGTATGAATATTGTAAT
22189162 ATTGTTTGTA
Statistics
Matches: 176, Mismatches: 7, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
80 72 0.41
81 2 0.01
82 2 0.01
83 1 0.01
85 1 0.01
86 2 0.01
87 1 0.01
88 95 0.54
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.57
Consensus pattern (87 bp):
TAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTAT
TTTGTATGAATATTGTAATTTA
Found at i:22189060 original size:80 final size:80
Alignment explanation
Indices: 22188969--22189140 Score: 308
Period size: 80 Copynumber: 2.1 Consensus size: 80
22188959 ATTGTAATTG
* *
22188969 TATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGGTTAGT
1 TATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTAGATTAGT
22189034 ATTTTGTATGAATAT
66 ATTTTGTATGAATAT
*
22189049 TATAATGTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTAGATTAGT
1 TATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTAGATTAGT
22189114 ATTTTGTATGAATAT
66 ATTTTGTATGAATAT
*
22189129 TGTAATTTTGTA
1 TATAATTTTGTA
22189141 ATTTTGTATG
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 87 1.00
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (80 bp):
TATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTAGATTAGT
ATTTTGTATGAATAT
Found at i:22189061 original size:19 final size:19
Alignment explanation
Indices: 22189037--22189073 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
22189027 GGTTAGTATT
22189037 TTGTATGAATATTATAATG
1 TTGTATGAATATTATAATG
*
22189056 TTGTATGAATATTGTAAT
1 TTGTATGAATATTATAAT
22189074 TATTTTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (19 bp):
TTGTATGAATATTATAATG
Found at i:22189138 original size:19 final size:19
Alignment explanation
Indices: 22189136--22189204 Score: 102
Period size: 19 Copynumber: 3.4 Consensus size: 19
22189126 TATTGTAATT
22189136 TTGTAATTTTGTATGAATA
1 TTGTAATTTTGTATGAATA
22189155 TTGTAATATTGTTTGTATGAATA
1 TTGT-A-A-T-TTTGTATGAATA
22189178 TTGTAATTTTGTATGAATA
1 TTGTAATTTTGTATGAATA
22189197 TTGTAATT
1 TTGTAATT
22189205 ATTTTATAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
19 24 0.52
20 2 0.04
21 2 0.04
22 2 0.04
23 16 0.35
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.54
Consensus pattern (19 bp):
TTGTAATTTTGTATGAATA
Found at i:22189144 original size:27 final size:27
Alignment explanation
Indices: 22189114--22189190 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
22189104 TTAGATTAGT
22189114 ATTTTGTATGAATATTGTAATTTTGTA
1 ATTTTGTATGAATATTGTAATTTTGTA
*
22189141 ATTTTGTATGAATATTGTAATATTG--
1 ATTTTGTATGAATATTGTAATTTTGTA
22189166 --TTTGTATGAATATTGTAATTTTGTA
1 ATTTTGTATGAATATTGTAATTTTGTA
22189191 TGAATATTGT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
23 22 0.48
27 24 0.52
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (27 bp):
ATTTTGTATGAATATTGTAATTTTGTA
Found at i:22189585 original size:7 final size:7
Alignment explanation
Indices: 22189573--22189597 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22189563 ATGGAACAGG
22189573 AAAATGA
1 AAAATGA
22189580 AAAATGA
1 AAAATGA
22189587 AAAATGA
1 AAAATGA
22189594 AAAA
1 AAAA
22189598 AAAAAGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (7 bp):
AAAATGA
Found at i:22192117 original size:4 final size:4
Alignment explanation
Indices: 22192101--22192145 Score: 81
Period size: 4 Copynumber: 11.2 Consensus size: 4
22192091 CAAAAAAGGC
*
22192101 TACA TACA GACA TACA TACA TACA TACA TACA TACA TACA TACA T
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA T
22192146 TCAGATTAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.24
Consensus pattern (4 bp):
TACA
Found at i:22195722 original size:17 final size:18
Alignment explanation
Indices: 22195702--22195743 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
22195692 CTTTAAATAA
22195702 AAAAATTTAAACAATTT-
1 AAAAATTTAAACAATTTC
* * *
22195719 AAAAATATAAATATTTTC
1 AAAAATTTAAACAATTTC
22195737 AAAAATT
1 AAAAATT
22195744 CAAAACATGT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAAATTTAAACAATTTC
Found at i:22196710 original size:21 final size:22
Alignment explanation
Indices: 22196684--22196741 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
22196674 AATTTTAGAA
22196684 TTTTTTAAAATTTT-AAAGATT
1 TTTTTTAAAATTTTAAAAGATT
* *
22196705 TTTTTT-GAATTTTACAAAGTTT
1 TTTTTTAAAATTTTA-AAAGATT
*
22196727 TTTTTTCATAATTTT
1 TTTTTT-AAAATTTT
22196742 TGAAAATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 6 0.20
21 6 0.20
22 12 0.40
24 6 0.20
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.62
Consensus pattern (22 bp):
TTTTTTAAAATTTTAAAAGATT
Found at i:22198319 original size:103 final size:101
Alignment explanation
Indices: 22198162--22198422 Score: 285
Period size: 103 Copynumber: 2.6 Consensus size: 101
22198152 GTTTTCTTTG
* * * * * * * *
22198162 TGCCGTAGTCCAACTATGGTCTTACACAT--GCATTGCCATGGCCCTACCATGGTCTTACATTTG
1 TGCCATAGCCCAACTATGGTCTTACATATAAACACTGCCATGGTCCAACCATGGTCTTAC-TTTC
* * *
22198225 TA-GTGCCATAACCCAATTATGGTCTTATCATCAAAA
65 AAGGTGCCATAACCCAATTACGGTATTATCATCAAAA
* * *
22198261 TGCCATAGCCCAGCTATGGTCTTACACATATATATACTGCCATGGTCCAACCATGGTCTTACTTT
1 TGCCATAGCCCAACTATGGTCTT--ACATATAAACACTGCCATGGTCCAACCATGGTCTTACTTT
* * * *
22198326 CAAGGTGTCATAACCCAGTTACGGTATTTTCATTAAAA
64 CAAGGTGCCATAACCCAATTACGGTATTATCATCAAAA
* * *
22198364 TGTCATAGCCCAACTATGGTCTTACATTTAAACACTGTCATGGTCCAACCATGGTCTTA
1 TGCCATAGCCCAACTATGGTCTTACATATAAACACTGCCATGGTCCAACCATGGTCTTA
22198423 TCCATCAATT
Statistics
Matches: 134, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
99 20 0.15
101 37 0.28
102 4 0.03
103 73 0.54
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (101 bp):
TGCCATAGCCCAACTATGGTCTTACATATAAACACTGCCATGGTCCAACCATGGTCTTACTTTCA
AGGTGCCATAACCCAATTACGGTATTATCATCAAAA
Found at i:22198395 original size:33 final size:33
Alignment explanation
Indices: 22198162--22198422 Score: 96
Period size: 33 Copynumber: 7.7 Consensus size: 33
22198152 GTTTTCTTTG
* * ** ** *
22198162 TGCCGTAGTCCAACTATGGTCTTACACATGCAT
1 TGCCATAGCCCAACTATGGTCTTACATTTAAAA
* * * ** *
22198195 TGCCATGGCCCTACCATGGTCTTACATTTGTAG
1 TGCCATAGCCCAACTATGGTCTTACATTTAAAA
* * *
22198228 TGCCATAACCCAATTATGGTCTTATCA-TCAAAA
1 TGCCATAGCCCAACTATGGTCTTA-CATTTAAAA
* * *
22198261 TGCCATAGCCCAGCTATGGTCTTACACATATATATAC
1 TGCCATAGCCCAACTATGGTCTT--ACAT-T-TAAAA
* * * **
22198298 TGCCATGGTCCAACCATGGTCTTAC-TTTCAAGG
1 TGCCATAGCCCAACTATGGTCTTACATTT-AAAA
* * ** * * *
22198331 TGTCATAACCCAGTTACGGTATTTTCA-TTAAAA
1 TGCCATAGCCCAACTATGGT-CTTACATTTAAAA
*
22198364 TGTCATAGCCCAACTATGGTCTTACATTTAAACA
1 TGCCATAGCCCAACTATGGTCTTACATTTAAA-A
* * * *
22198398 CTGTCATGGTCCAACCATGGTCTTA
1 -TGCCATAGCCCAACTATGGTCTTA
22198423 TCCATCAATT
Statistics
Matches: 164, Mismatches: 52, Indels: 22
0.69 0.22 0.09
Matches are distributed among these distances:
32 5 0.03
33 102 0.62
34 11 0.07
35 24 0.15
36 1 0.01
37 21 0.13
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (33 bp):
TGCCATAGCCCAACTATGGTCTTACATTTAAAA
Found at i:22200169 original size:41 final size:43
Alignment explanation
Indices: 22200083--22200170 Score: 117
Period size: 41 Copynumber: 2.1 Consensus size: 43
22200073 TCAAATTTAA
* *
22200083 TTTAATTATTTTATTTTTTATTTTGAAGTAAATAAGATTACATT
1 TTTAATTATTTTA-TTTTTATTTTGAAGCAAATAAGATTAAATT
* *
22200127 TTTAATTGTTTTA-TTTT-TTTTGAAGCAAATAATATTAAATT
1 TTTAATTATTTTATTTTTATTTTGAAGCAAATAAGATTAAATT
22200168 TTT
1 TTT
22200171 CAAGTTTATA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
41 24 0.60
42 4 0.10
44 12 0.30
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (43 bp):
TTTAATTATTTTATTTTTATTTTGAAGCAAATAAGATTAAATT
Found at i:22200183 original size:41 final size:42
Alignment explanation
Indices: 22200092--22200183 Score: 109
Period size: 41 Copynumber: 2.2 Consensus size: 42
22200082 ATTTAATTAT
* * *
22200092 TTTATTTTTTATTTTGAAGTAAATAAGATTACATTTTTAATTG
1 TTTATATTTTATTTTGAAGCAAATAAGATTAAATTTTTAA-TG
*
22200135 TTT-TATTTT-TTTTGAAGCAAATAATATTAAATTTTTCAA-G
1 TTTATATTTTATTTTGAAGCAAATAAGATTAAATTTTT-AATG
22200175 TTTATATTT
1 TTTATATTT
22200184 AAAACTTAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
40 4 0.09
41 29 0.67
42 7 0.16
43 3 0.07
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.57
Consensus pattern (42 bp):
TTTATATTTTATTTTGAAGCAAATAAGATTAAATTTTTAATG
Found at i:22218763 original size:4 final size:4
Alignment explanation
Indices: 22218754--22218778 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
22218744 AACCACTTGC
22218754 TTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT T
22218779 ATTGTTGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:22227687 original size:14 final size:14
Alignment explanation
Indices: 22227668--22227696 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22227658 ATTTCATTCT
22227668 TGTACTTTTTAAAC
1 TGTACTTTTTAAAC
22227682 TGTACTTTTTAAAC
1 TGTACTTTTTAAAC
22227696 T
1 T
22227697 TTGAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TGTACTTTTTAAAC
Found at i:22227998 original size:21 final size:19
Alignment explanation
Indices: 22227956--22228002 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
22227946 AATAAAATAA
*
22227956 AATAAAATATTAATTAGTT
1 AATAAAATAGTAATTAGTT
*
22227975 AATAATAATAGTAATTGGGTT
1 AATAA-AATAGTAATT-AGTT
22227996 AATAAAA
1 AATAAAA
22228003 ATATATTAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 5 0.21
20 11 0.46
21 8 0.33
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.36
Consensus pattern (19 bp):
AATAAAATAGTAATTAGTT
Found at i:22228005 original size:21 final size:20
Alignment explanation
Indices: 22227959--22228005 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
22227949 AAAATAAAAT
*
22227959 AAAATATTAATTAGTTAATA
1 AAAATAGTAATTAGTTAATA
* *
22227979 ATAATAGTAATTGGGTTAATA
1 AAAATAGTAATT-AGTTAATA
22228000 AAAATA
1 AAAATA
22228006 TATTAGTGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.36
Consensus pattern (20 bp):
AAAATAGTAATTAGTTAATA
Found at i:22229490 original size:15 final size:16
Alignment explanation
Indices: 22229458--22229491 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22229448 CATTATGTTG
22229458 TGTTATGCGAACCCTA
1 TGTTATGCGAACCCTA
*
22229474 TGTTATGTGAA-CCTA
1 TGTTATGCGAACCCTA
22229489 TGT
1 TGT
22229492 GTATTGCGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.38
Consensus pattern (16 bp):
TGTTATGCGAACCCTA
Found at i:22231392 original size:15 final size:14
Alignment explanation
Indices: 22231371--22231406 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
22231361 ATGATCCTTA
*
22231371 ATAATTATCTTAAT
1 ATAATTATCCTAAT
22231385 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
22231400 ATAATTA
1 ATAATTA
22231407 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:22232011 original size:29 final size:29
Alignment explanation
Indices: 22231979--22232037 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
22231969 ATAAAATTAA
*
22231979 ATCCTAAAATTAAATGATCCTTA-ATAATT
1 ATCCTAAAATT-AATGATCCTAATATAATT
* *
22232008 ATCCTAATATTAATTATCCTAATATAATT
1 ATCCTAAAATTAATGATCCTAATATAATT
22232037 A
1 A
22232038 AAATAGAGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.41
Consensus pattern (29 bp):
ATCCTAAAATTAATGATCCTAATATAATT
Found at i:22232023 original size:15 final size:14
Alignment explanation
Indices: 22232002--22232037 Score: 63
Period size: 15 Copynumber: 2.5 Consensus size: 14
22231992 ATGATCCTTA
22232002 ATAATTATCCTAAT
1 ATAATTATCCTAAT
22232016 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
22232031 ATAATTA
1 ATAATTA
22232038 AAATAGAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:22232448 original size:631 final size:630
Alignment explanation
Indices: 22231230--22232498 Score: 2466
Period size: 631 Copynumber: 2.0 Consensus size: 630
22231220 AAAAAGATGG
22231230 ATGCCTTTTGAGTCATTCACCCCCTATTTATAGTGCTAGGGGAGATAGTCTAATACTACTTAAAC
1 ATGCCTTTTGAGTCATTCACCCCCTATTTATAGTGCTAGGGGAGATAGTCTAATACTACTTAAAC
22231295 TTCCAAAAGATAAATACATTTAACTGAAGATAAATAAAGATAAATAAAATTAAATCCTAAAATTA
66 TTCCAAAAGATAAATACATTTAACTGAAGATAAATAAAGATAAATAAAATTAAATCCTAAAATTA
*
22231360 AATGATCCTTAATAATTATCTTAATATTAATTATCCTAATATAATTAAAATAGAGTCTGATAGAA
131 AATGATCCTTAATAATTATCCTAATATTAATTATCCTAATATAATTAAAATAGAGTCTGATAGAA
22231425 TAAAATCTCTTCTTTTTGCATTTCAACCCTTGTTTCCTCCATGCTTGCACTTTTGGCATCAACTT
196 TAAAATCTCTTCTTTTTGCATTTCAACCCTTGTTTCCTCCATGCTTGCACTTTTGGCATCAACTT
*
22231490 TTCCTTGTGTTGCACATTGGCCCATTTTATCTCTAAATTCACGCTTTTGGCCCTTAATTTTGTTT
261 TTCCTTGTGTTGCACATTGGCCCATTTTATCTCTAAATTCACGCTTTTGGCCCTTAATTTTGCTT
22231555 TTGCCTCAAATTTAGTCCCTATGAGATAAAAGATCATAAATAGCGCAAATTAGAAGGATCATACT
326 TTGCCTCAAATTTAGTCCCTATGAGATAAAAGATCATAAATAGCGCAAATTAGAAGGATCATACT
22231620 CAGAATAAATATATAATTAATACATAAAGATACATTATTCTAGAGTGTTATCAATTTCTATAAAG
391 CAGAATAAATATATAATTAATACATAAAGATACATTATTCTAGAGTGTTATCAATTTCTATAAAG
22231685 GATTTTTGTAGTAATACTTTATAAAATAATCTAATAATATTAGAAAATAAAGGAAGGAAAGAAAT
456 GATTTTTGTAGTAATACTTTATAAAATAATCTAATAATATTAGAAAATAAAGGAAGGAAAGAAAT
* *
22231750 AATATTAGAATTTGTTGGTGTGATTTCCAAATGAAATCTCATTCCTATTTATAGGAATTTTCATG
521 AATAGTAGAATTTGTTGGTGTGATTTCCAAATGAAATCGCATTCCTATTTATAGGAATTTTCATG
22231815 TCTCTTCATAGAGACATCTTTCAATATGTGTCTTTCTGAATAATA
586 TCTCTTCATAGAGACATCTTTCAATATGTGTCTTTCTGAATAATA
22231860 ATGCCTTTTGAGTCATTTCACCCCCTATTTATAGTGCTAGGGGAGATAGTCTAATACTACTTAAA
1 ATGCCTTTTGAGTCA-TTCACCCCCTATTTATAGTGCTAGGGGAGATAGTCTAATACTACTTAAA
22231925 CTTCCAAAAGATAAATACATTTAACTGAAGATAAATAAAGATAAATAAAATTAAATCCTAAAATT
65 CTTCCAAAAGATAAATACATTTAACTGAAGATAAATAAAGATAAATAAAATTAAATCCTAAAATT
22231990 AAATGATCCTTAATAATTATCCTAATATTAATTATCCTAATATAATTAAAATAGAGTCTGATAGA
130 AAATGATCCTTAATAATTATCCTAATATTAATTATCCTAATATAATTAAAATAGAGTCTGATAGA
22232055 ATAAAATCTCTTCTTTTTGCATTTCAACCCTTGTTTCCTCCATGCTTGCACTTTTGGCATCAACT
195 ATAAAATCTCTTCTTTTTGCATTTCAACCCTTGTTTCCTCCATGCTTGCACTTTTGGCATCAACT
22232120 TTTCCTTGTGTTGCACATTGGCCCATTTTATCTCTAAATTCACGCTTTTGGCCCTTAATTTTGCT
260 TTTCCTTGTGTTGCACATTGGCCCATTTTATCTCTAAATTCACGCTTTTGGCCCTTAATTTTGCT
*
22232185 TTTGCCTCAAATTTAGTCCCTATGAGATAAAAGATCATAAATAGCTCAAATTAGAAGGATCATAC
325 TTTGCCTCAAATTTAGTCCCTATGAGATAAAAGATCATAAATAGCGCAAATTAGAAGGATCATAC
*
22232250 TCAGAATAAATATATAATTAATACATAAAGATACGTTATTCTAGAGTGTTATCAATTTCTATAAA
390 TCAGAATAAATATATAATTAATACATAAAGATACATTATTCTAGAGTGTTATCAATTTCTATAAA
22232315 GGATTTTTGTAGTAATACTTTATAAAATAATCTAATAATATTAGAAAATAAAGGAAGGAAAGAAA
455 GGATTTTTGTAGTAATACTTTATAAAATAATCTAATAATATTAGAAAATAAAGGAAGGAAAGAAA
22232380 TAATAGTAGAATTTGTTGGTGTGATTTCCAAATGAAATCGCATTCCTATTTATAGGAATTTTCAT
520 TAATAGTAGAATTTGTTGGTGTGATTTCCAAATGAAATCGCATTCCTATTTATAGGAATTTTCAT
22232445 GTCTCTTCATAGAGACATCTTTCAATATGTGTCTTTCTGAATAATA
585 GTCTCTTCATAGAGACATCTTTCAATATGTGTCTTTCTGAATAATA
*
22232491 ATGTCTTT
1 ATGCCTTT
22232499 AAAATAAACA
Statistics
Matches: 631, Mismatches: 7, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
630 15 0.02
631 616 0.98
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (630 bp):
ATGCCTTTTGAGTCATTCACCCCCTATTTATAGTGCTAGGGGAGATAGTCTAATACTACTTAAAC
TTCCAAAAGATAAATACATTTAACTGAAGATAAATAAAGATAAATAAAATTAAATCCTAAAATTA
AATGATCCTTAATAATTATCCTAATATTAATTATCCTAATATAATTAAAATAGAGTCTGATAGAA
TAAAATCTCTTCTTTTTGCATTTCAACCCTTGTTTCCTCCATGCTTGCACTTTTGGCATCAACTT
TTCCTTGTGTTGCACATTGGCCCATTTTATCTCTAAATTCACGCTTTTGGCCCTTAATTTTGCTT
TTGCCTCAAATTTAGTCCCTATGAGATAAAAGATCATAAATAGCGCAAATTAGAAGGATCATACT
CAGAATAAATATATAATTAATACATAAAGATACATTATTCTAGAGTGTTATCAATTTCTATAAAG
GATTTTTGTAGTAATACTTTATAAAATAATCTAATAATATTAGAAAATAAAGGAAGGAAAGAAAT
AATAGTAGAATTTGTTGGTGTGATTTCCAAATGAAATCGCATTCCTATTTATAGGAATTTTCATG
TCTCTTCATAGAGACATCTTTCAATATGTGTCTTTCTGAATAATA
Found at i:22233129 original size:18 final size:18
Alignment explanation
Indices: 22233106--22233140 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
22233096 AGTACATAGG
22233106 TTTGCCGAAATGGGGAGT
1 TTTGCCGAAATGGGGAGT
22233124 TTTGCCGAAATGGGGAG
1 TTTGCCGAAATGGGGAG
22233141 GGCTCGCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.11, G:0.40, T:0.26
Consensus pattern (18 bp):
TTTGCCGAAATGGGGAGT
Found at i:22235192 original size:21 final size:21
Alignment explanation
Indices: 22235166--22235223 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
22235156 CGAAACTTAG
22235166 ATTACTATTATTATTATTAT-T
1 ATTACTATTATTATT-TTATCT
* *
22235187 ATTACTACTCTTA-TTTATCT
1 ATTACTATTATTATTTTATCT
22235207 ATTTACTATTATTATTT
1 A-TTACTATTATTATTT
22235224 GTTTATTAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
19 4 0.13
20 3 0.10
21 21 0.70
22 2 0.07
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTACTATTATTATTTTATCT
Found at i:22235230 original size:21 final size:20
Alignment explanation
Indices: 22235167--22235230 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 20
22235157 GAAACTTAGA
22235167 TTACTATTATTATTATTATTA-
1 TTACTATTATTATT-TT-TTAT
* * *
22235188 TTACTACTCTTATTTATCTAT
1 TTACTATTATTATTT-TTTAT
22235209 TTACTATTATTATTTGTTTAT
1 TTACTATTATTATTT-TTTAT
22235230 T
1 T
22235231 AGTGTACGAT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
20 3 0.09
21 31 0.91
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.62
Consensus pattern (20 bp):
TTACTATTATTATTTTTTAT
Found at i:22250893 original size:13 final size:13
Alignment explanation
Indices: 22250877--22250920 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
22250867 TATATAAAAA
22250877 TAATATAATTTTT
1 TAATATAATTTTT
*
22250890 TAATAT--TTTATA
1 TAATATAATTT-TT
22250902 TAATATAATTTTT
1 TAATATAATTTTT
22250915 TAATAT
1 TAATAT
22250921 GGGCCGATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 3 0.12
12 7 0.27
13 13 0.50
14 3 0.12
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TAATATAATTTTT
Found at i:22259468 original size:3 final size:3
Alignment explanation
Indices: 22259462--22259513 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
22259452 TTGGGCTTCA
* * * * *
22259462 CTT CTT CTT CTT CTT CCT CTT CTT CTC CTT CAT CAT CAT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
22259510 CTT C
1 CTT C
22259514 ATCTCCCTCT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.06, C:0.38, G:0.00, T:0.56
Consensus pattern (3 bp):
CTT
Found at i:22274172 original size:17 final size:17
Alignment explanation
Indices: 22274150--22274184 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
22274140 CAATTACTTA
22274150 GCTTAACAGAATAGTTT
1 GCTTAACAGAATAGTTT
22274167 GCTTAACAGAATAGTTT
1 GCTTAACAGAATAGTTT
22274184 G
1 G
22274185 TGAAGCACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (17 bp):
GCTTAACAGAATAGTTT
Found at i:22277760 original size:34 final size:32
Alignment explanation
Indices: 22277722--22277824 Score: 95
Period size: 34 Copynumber: 3.1 Consensus size: 32
22277712 TAATTTATAT
*
22277722 TTTATGATCATTATATCAAACTATTTAAATATTA
1 TTTATG-TCATTATATTAAA-TATTTAAATATTA
*
22277756 TTTAT-T-ATTATACTTAAATTTTTAAAATATT-
1 TTTATGTCATTATA-TTAAATATTT-AAATATTA
* *
22277787 TTTTTGTCTAATATATTAAATTATTTAAATATTA
1 TTTATGTC-ATTATATTAAA-TATTTAAATATTA
22277821 TTTA
1 TTTA
22277825 AATTATTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
31 14 0.25
32 13 0.23
33 12 0.21
34 17 0.30
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (32 bp):
TTTATGTCATTATATTAAATATTTAAATATTA
Found at i:22277837 original size:33 final size:31
Alignment explanation
Indices: 22277674--22277824 Score: 100
Period size: 33 Copynumber: 4.9 Consensus size: 31
22277664 ATATTCATAT
*
22277674 TTATATT-AATTATTTAAA-ATATATTTA-AA
1 TTATATTAAATTATTTAAATAT-TATTTATTA
* * * * *
22277703 TT-T-TTAGATTAATTTATATTTTA-TGATCA
1 TTATATTAAATT-ATTTAAATATTATTTATTA
* *
22277732 TTATATCAAACTATTTAAATATTATTTATTA
1 TTATATTAAATTATTTAAATATTATTTATTA
* *
22277763 TTATACTTAAATT-TTTAAAATATTTTTTTGTCTA
1 TTATA-TTAAATTATTT-AAATA-TTATTTAT-TA
*
22277797 ATATATTAAATTATTTAAATATTATTTA
1 TTATATTAAATTATTTAAATATTATTTA
22277825 AATTATTTTA
Statistics
Matches: 91, Mismatches: 19, Indels: 21
0.69 0.15 0.16
Matches are distributed among these distances:
27 2 0.02
28 6 0.07
29 13 0.14
30 12 0.13
31 16 0.18
32 15 0.16
33 18 0.20
34 9 0.10
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (31 bp):
TTATATTAAATTATTTAAATATTATTTATTA
Found at i:22278726 original size:25 final size:24
Alignment explanation
Indices: 22278694--22278747 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
22278684 ATTGAACATC
*
22278694 AAATTAATTGAGAATT-TATAAAAA
1 AAATTAATTG-GAATTCAATAAAAA
*
22278718 AAATGTAATTGGACTTCAATAAAAA
1 AAAT-TAATTGGAATTCAATAAAAA
22278743 AAATT
1 AAATT
22278748 TTAACATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.56, C:0.04, G:0.09, T:0.31
Consensus pattern (24 bp):
AAATTAATTGGAATTCAATAAAAA
Found at i:22283186 original size:57 final size:57
Alignment explanation
Indices: 22283095--22283222 Score: 202
Period size: 57 Copynumber: 2.2 Consensus size: 57
22283085 TTAACATGAG
* *
22283095 CCTAAAGTCACCAAAATAGAAACAGGGCCTACCTAAATTGACTCTAAAGGACCCAAA
1 CCTAAAGTCACCAAAACAGAAACAGGGCCCACCTAAATTGACTCTAAAGGACCCAAA
* * * *
22283152 CCTAAAGTTACCAAAACGGAAACAGGTCCCACCTAAATTGATTCTAAAGGACCCAAA
1 CCTAAAGTCACCAAAACAGAAACAGGGCCCACCTAAATTGACTCTAAAGGACCCAAA
22283209 CCTAAAGTCACCAA
1 CCTAAAGTCACCAA
22283223 GGAACCCAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 64 1.00
ACGTcount: A:0.43, C:0.27, G:0.13, T:0.16
Consensus pattern (57 bp):
CCTAAAGTCACCAAAACAGAAACAGGGCCCACCTAAATTGACTCTAAAGGACCCAAA
Found at i:22286682 original size:26 final size:26
Alignment explanation
Indices: 22286653--22286728 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
22286643 CTATATTTTC
*
22286653 AAATTAAACTATGATTTAAATTAATA
1 AAATTAAACCATGATTTAAATTAATA
*
22286679 AAATTAAACCATGATTTGAATTAATA
1 AAATTAAACCATGATTTAAATTAATA
*
22286705 AAACTAAACCATGATTTAAATTAA
1 AAATTAAACCATGATTTAAATTAA
22286729 CACTTCATTC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (26 bp):
AAATTAAACCATGATTTAAATTAATA
Found at i:22289122 original size:2 final size:2
Alignment explanation
Indices: 22289115--22289146 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
22289105 TACACAGATA
22289115 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
22289147 CATGTATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:22296626 original size:2 final size:2
Alignment explanation
Indices: 22296615--22296665 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
22296605 TCAAAGCAAC
22296615 CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
22296656 CT CT CT CT CT
1 CT CT CT CT CT
22296666 TTTTGGGTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Found at i:22300740 original size:38 final size:38
Alignment explanation
Indices: 22300658--22300733 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
22300648 TAAACAAGTA
22300658 AATAAAATAAAATAAAATCATCATATATATTATGTTAG
1 AATAAAATAAAATAAAATCATCATATATATTATGTTAG
22300696 AATAAAATAAAATAAAATCATCATATATATTATGTTAG
1 AATAAAATAAAATAAAATCATCATATATATTATGTTAG
22300734 TCTAAAAGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.34
Consensus pattern (38 bp):
AATAAAATAAAATAAAATCATCATATATATTATGTTAG
Found at i:22302446 original size:42 final size:42
Alignment explanation
Indices: 22302395--22302680 Score: 441
Period size: 42 Copynumber: 6.8 Consensus size: 42
22302385 GTTTACAAAC
* *
22302395 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
22302437 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
22302479 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* *
22302521 AAAAACGCCGCTAAAGAACATGTTCTTTTGCGGCG-TTTGTAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG-AA
* *
22302563 AAAAATGCCACTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
22302605 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
** *
22302646 GGAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG
22302681 TTTTTTTTCT
Statistics
Matches: 227, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
41 36 0.16
42 188 0.83
43 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:22302698 original size:84 final size:82
Alignment explanation
Indices: 22302395--22302766 Score: 438
Period size: 84 Copynumber: 4.5 Consensus size: 82
22302385 GTTTACAAAC
* * *
22302395 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
22302460 TCTTTAGCGGCGCTTAGAA
66 TCTTTAGCGGCGCTT--AA
22302479 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
* *
22302544 TCTTTTGCGGCGTTTGTAA
66 TCTTTAGCGGCG-CT-TAA
* * *
22302563 AAAAATGCCACTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
22302628 TCTTTAGCGGCGCTTAA
66 TCTTTAGCGGCGCTTAA
** * ****** *
22302645 GGGAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTCTAATCGCCGCTAAAGAACAT
1 -AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG-CTTAGAAAAAAACGCCGCTAAAGAACAT
* ** **
22302710 GTTCTTTAGTGGCATTTTT
64 GTTCTTTAGCGGCGCTTAA
* * * * *
22302729 ACAAACGCCGCAAAAGAACAGGTTCTTTAGTGGCGCTT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
22302767 TTATACAAAA
Statistics
Matches: 249, Mismatches: 35, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
82 5 0.02
83 60 0.24
84 182 0.73
85 1 0.00
86 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (82 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
TCTTTAGCGGCGCTTAA
Found at i:22302703 original size:126 final size:127
Alignment explanation
Indices: 22302395--22302766 Score: 459
Period size: 126 Copynumber: 3.0 Consensus size: 127
22302385 GTTTACAAAC
* * * *
22302395 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAG-AAAAAAA-CGCCGCTAAAGATCAT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAAAAAAATCGCCGCTAAAGAACAT
*
22302458 GTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
65 GTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* *
22302521 AAAAACGCCGCTAAAGAACATGTTCTTTTGCGGCGTTTGTAAAAAAAT-GCCACTAAAGAACATG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAATCGCCGCTAAAGAACATG
*
22302585 TTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AG
66 TTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
** * * *****
22302646 GGAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTCTAATCGCCGCTAAAGAACATG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAATCGCCGCTAAAGAACATG
* * *** * * * *
22302711 TTCTTTAGTGGC-ATT-TTTACAAACGCCGCAAAAGAACAGGTTCTTTAGTGGCGCTT
66 TTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTT
22302767 TTATACAAAA
Statistics
Matches: 215, Mismatches: 28, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
124 34 0.16
125 44 0.20
126 137 0.64
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (127 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAATCGCCGCTAAAGAACATG
TTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:22302856 original size:14 final size:14
Alignment explanation
Indices: 22302833--22302866 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
22302823 GCCCTCCTGT
*
22302833 AGCAAAATTTCAAA
1 AGCAACATTTCAAA
22302847 AGCAACATTTCAAA
1 AGCAACATTTCAAA
22302861 AGCAAC
1 AGCAAC
22302867 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (14 bp):
AGCAACATTTCAAA
Found at i:22303157 original size:21 final size:21
Alignment explanation
Indices: 22303089--22303159 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
22303079 TTTTGCTCTG
* *
22303089 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
22303110 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
22303131 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
22303152 CTCTGCTT
1 CTCTGCTT
22303160 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:22308658 original size:11 final size:9
Alignment explanation
Indices: 22308610--22308774 Score: 69
Period size: 7 Copynumber: 19.0 Consensus size: 9
22308600 AATTGCAATG
22308610 GTAAGTTAT
1 GTAAGTTAT
22308619 GTAAGTTAT
1 GTAAGTTAT
22308628 GTAAGTTAAAT
1 GTAAGTT--AT
22308639 GT-A-TTAT
1 GTAAGTTAT
22308646 GTAAGTTAAAT
1 GTAAGTT--AT
22308657 GTAAG-T-T
1 GTAAGTTAT
22308664 GTAAGTTAT
1 GTAAGTTAT
*
22308673 -TATGTATTAT
1 GTAAG--TTAT
22308683 GTAAG-T-T
1 GTAAGTTAT
22308690 GTAAGTTAAAT
1 GTAAGTT--AT
*
22308701 GT-A-TTGT
1 GTAAGTTAT
22308708 GTAAG-T-T
1 GTAAGTTAT
22308715 GTAAGTTAAAT
1 GTAAGTT--AT
22308726 GT-A-TTAT
1 GTAAGTTAT
22308733 GTAAG-T-T
1 GTAAGTTAT
22308740 GTAAGTTAT
1 GTAAGTTAT
*
22308749 -TATGTATTAT
1 GTAAG--TTAT
22308759 GTAAG-T-T
1 GTAAGTTAT
22308766 GTAAGTTAT
1 GTAAGTTAT
22308775 TATGTATTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 60
0.65 0.03 0.32
Matches are distributed among these distances:
7 41 0.34
8 18 0.15
9 27 0.22
10 12 0.10
11 23 0.19
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:22308685 original size:19 final size:19
Alignment explanation
Indices: 22308624--22309041 Score: 82
Period size: 18 Copynumber: 21.6 Consensus size: 19
22308614 GTTATGTAAG
*
22308624 TTATGTAAGTTA-AATGTA
1 TTATGTAAGTTATTATGTA
*
22308642 TTATGTAAGTTA-AATGTAA
1 TTATGTAAGTTATTATGT-A
*
22308661 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
22308679 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
*
22308704 TTGTGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
* *
22308729 TTATGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
22308745 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
22308763 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
*
22308781 TTGTGTAAGTTGCAAGTTAAATGTA
1 TTATGTAAGTT---A-TT--ATGTA
* *
22308806 TTATGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
22308822 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
22308840 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
* * *
22308858 TTGTGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
22308874 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
22308892 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
*
22308910 TTGTGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
* * *
22308935 TTATGTCAGTCA-AATGTA
1 TTATGTAAGTTATTATGTA
22308953 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
* *
22308978 TTATGTAAGTT-GTAAGTTA
1 TTATGTAAGTTATTATG-TA
*
22308997 TTATGT-A-TTATGTAAGTA
1 TTATGTAAGTTAT-TATGTA
*
22309015 --ATGTAAGTTA-AATGTA
1 TTATGTAAGTTATTATGTA
22309031 TTATGTAAGTT
1 TTATGTAAGTT
22309042 GTAAGTTATT
Statistics
Matches: 301, Mismatches: 43, Indels: 112
0.66 0.09 0.25
Matches are distributed among these distances:
14 3 0.01
15 18 0.06
16 19 0.06
17 6 0.02
18 83 0.28
19 71 0.24
20 5 0.02
21 3 0.01
22 4 0.01
23 8 0.03
24 3 0.01
25 78 0.26
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (19 bp):
TTATGTAAGTTATTATGTA
Found at i:22308689 original size:26 final size:26
Alignment explanation
Indices: 22308655--22309060 Score: 579
Period size: 26 Copynumber: 16.1 Consensus size: 26
22308645 TGTAAGTTAA
22308655 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
22308681 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
22308706 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
22308731 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
22308757 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* * *
22308783 GTGTAAGTTGCAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
22308808 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
22308834 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
22308860 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
22308886 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
22308912 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
22308937 ATGTCA---GTCA---A--ATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
22308955 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
22308980 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
22309006 ATGTAAGTAATGTAAGTTA-AATGTATT
1 ATGTAAGT--TGTAAGTTATTATGTATT
22309033 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
22309059 AT
1 AT
22309061 TTAATAAAAT
Statistics
Matches: 345, Mismatches: 22, Indels: 26
0.88 0.06 0.07
Matches are distributed among these distances:
18 12 0.03
19 1 0.00
21 3 0.01
22 3 0.01
24 1 0.00
25 113 0.33
26 188 0.54
27 15 0.04
28 9 0.03
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (26 bp):
ATGTAAGTTGTAAGTTATTATGTATT
Found at i:22309030 original size:53 final size:51
Alignment explanation
Indices: 22308655--22309060 Score: 571
Period size: 51 Copynumber: 8.0 Consensus size: 51
22308645 TGTAAGTTAA
* *
22308655 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATT
*
22308706 GTGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
* * * *
22308757 ATGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGCAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATT
*
22308808 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATT
* *
22308860 GTGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATT
* * *
22308912 GTGTAAGTTGTAAGTTAAATGTATTATGTCA---GTCA---A--ATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
22308955 ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
22309006 ATGTAAGTAATGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGT--TGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
22309059 AT
1 AT
22309061 TTAATAAAAT
Statistics
Matches: 324, Mismatches: 18, Indels: 24
0.89 0.05 0.07
Matches are distributed among these distances:
43 36 0.11
45 1 0.00
46 3 0.01
48 3 0.01
49 1 0.00
50 24 0.07
51 114 0.35
52 97 0.30
53 45 0.14
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (51 bp):
ATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATT
Found at i:22309053 original size:19 final size:19
Alignment explanation
Indices: 22308830--22309056 Score: 100
Period size: 19 Copynumber: 12.5 Consensus size: 19
22308820 AGTTATTATG
22308830 TATTATGTAAGTTGTAAGT
1 TATTATGTAAGTTGTAAGT
22308849 TATTATGT-A-TTGT--GT
1 TATTATGTAAGTTGTAAGT
* * * *
22308864 AAGT-TGTAAGTTATTA-T
1 TATTATGTAAGTTGTAAGT
22308881 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
22308901 TATTATGT-A-TTGT--GT
1 TATTATGTAAGTTGTAAGT
* * *
22308916 AAGT-TGTAAG-T-TAAAT
1 TATTATGTAAGTTGTAAGT
* * *
22308932 GTATTATGTCAG-T-CAAAT
1 -TATTATGTAAGTTGTAAGT
22308950 GTATTATGTAAGTTGTAAGTTAAAT
1 -TATTATGTAAGTTGTAAG-----T
22308975 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
*
22308995 TATTATGT-ATTATGTAAG-
1 TATTATGTAAGT-TGTAAGT
*
22309013 TA--ATGTAAG-T-TAAAT
1 TATTATGTAAGTTGTAAGT
22309028 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
22309048 TATTATGTA
1 TATTATGTA
22309057 TTATTTAATA
Statistics
Matches: 159, Mismatches: 21, Indels: 56
0.67 0.09 0.24
Matches are distributed among these distances:
14 10 0.06
15 12 0.08
16 10 0.06
17 12 0.08
18 36 0.23
19 51 0.32
20 8 0.05
25 20 0.13
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.47
Consensus pattern (19 bp):
TATTATGTAAGTTGTAAGT
Found at i:22309180 original size:73 final size:73
Alignment explanation
Indices: 22309097--22309246 Score: 300
Period size: 73 Copynumber: 2.1 Consensus size: 73
22309087 ACATTACTAA
22309097 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
22309162 TATTTTTT
66 TATTTTTT
22309170 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
22309235 TATTTTTT
66 TATTTTTT
22309243 TATA
1 TATA
22309247 TTTTATTTTA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.41, C:0.07, G:0.01, T:0.51
Consensus pattern (73 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTT
Found at i:22309240 original size:35 final size:35
Alignment explanation
Indices: 22309128--22309240 Score: 104
Period size: 35 Copynumber: 3.1 Consensus size: 35
22309118 ATAAAATAAC
22309128 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
1 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
* * **** *
22309163 ATTTT-TTTATAATTATTAATAATATTTAATAAAATA-AC
1 ATTTTATTT-TAA-TAGT--CAAT-TTTAATATTCCACAT
22309201 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
1 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
22309236 ATTTT
1 ATTTT
22309241 TTTATATTTT
Statistics
Matches: 57, Mismatches: 14, Indels: 14
0.67 0.16 0.16
Matches are distributed among these distances:
34 11 0.19
35 17 0.30
36 3 0.05
37 3 0.05
38 12 0.21
39 11 0.19
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (35 bp):
ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
Found at i:22309411 original size:13 final size:13
Alignment explanation
Indices: 22309393--22309463 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
22309383 ATTTATAATT
22309393 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
22309406 ATTTAAGTAACAT
1 ATTTAAGTAATAA
22309419 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
22309432 ATTTAAGTAACAT
1 ATTTAAGTAATAA
22309445 ATTTAAGTAATAA
1 ATTTAAGTAATAA
22309458 ATTTAA
1 ATTTAA
22309464 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:22309422 original size:26 final size:26
Alignment explanation
Indices: 22309392--22309463 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
22309382 TATTTATAAT
22309392 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
22309418 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
22309444 TATTTAAGTAATAAATTTAA
1 TATTTAAGTAATAAATTTAA
22309464 ACAAATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (26 bp):
TATTTAAGTAATAAATTTAAGTAACA
Found at i:22309490 original size:17 final size:17
Alignment explanation
Indices: 22309468--22309511 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
22309458 ATTTAAACAA
22309468 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
22309485 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
22309502 ATTTTAGTAA
1 ATTTTAGTAA
22309512 TAAATTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Found at i:22312833 original size:23 final size:24
Alignment explanation
Indices: 22312807--22312857 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
22312797 TAATTTAAAT
22312807 ATTATCAA-TATTTAAAATTATT-A
1 ATTATCAATTATTT-AAATTATTCA
* *
22312830 ATTATTAATTATTTATATTATTCA
1 ATTATCAATTATTTAAATTATTCA
22312854 ATTA
1 ATTA
22312858 ATGTATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 14 0.58
24 10 0.42
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
ATTATCAATTATTTAAATTATTCA
Found at i:22312841 original size:14 final size:17
Alignment explanation
Indices: 22312822--22312857 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
22312812 CAATATTTAA
22312822 AATTA-TTA-ATTATT-
1 AATTATTTATATTATTC
22312836 AATTATTTATATTATTC
1 AATTATTTATATTATTC
22312853 AATTA
1 AATTA
22312858 ATGTATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 5 0.26
15 3 0.16
16 6 0.32
17 5 0.26
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
AATTATTTATATTATTC
Found at i:22313925 original size:113 final size:113
Alignment explanation
Indices: 22313591--22313992 Score: 386
Period size: 114 Copynumber: 3.5 Consensus size: 113
22313581 CATGGTTAAG
* * * * *
22313591 ACCAAAACTG-TGCGTTTAGGTAAAGATCTTTTGCGGCGCTTATCAAAAAGCGCCGCTAATAATA
1 ACCAAAAC-GCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTAACAAAAAGCGCCGCTAATACT-
* * * * * *
22313655 TGATTTAGTGGCGATTTCTCGTAAGCGCCACTAATTCTAATATACCTCAAT
64 T-ATTTAGCGGCGTTTTATCGTAAGCGCCACTAATTATAGTATACATCAAT
* * **
22313706 ACC-AAACTCTGCGTTTTGGTGT--GCATATCTTGCGGCGCTTAACTGAAAGCGCCGCTAATACT
1 ACCAAAACGCTGCGTTTTGGT-TAAG-ATATTTTGCGGCGCTTAACAAAAAGCGCCGCTAATAC-
* *
22313768 GTTATTTAGCGGCGTTTTATTGTAAGCGCCACTAATTATAGTATACATCGAT
63 -TTATTTAGCGGCGTTTTATCGTAAGCGCCACTAATTATAGTATACATCAAT
** * * *
22313820 ACCAAAACGCTGCGTTTTGGTTAAGAT-TTTTGCGGCGCTTCCCACAATGCGCCGCTATTACTTA
1 ACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTAACAAAAAGCGCCGCTAATACTTA
* * *
22313884 CTTTAGCGGCGTTTTATCATAATCGCCACTAATTATTGTATACATCAAT
66 -TTTAGCGGCGTTTTATCGTAAGCGCCACTAATTATAGTATACATCAAT
* * * * * *
22313933 ACAAAAACGATGCATTTTGGTCT-TGAGATTTTGCGGCGCATAACCAAAAA-CGCCGCTAAT
1 ACCAAAACGCTGCGTTTTGGT-TAAGATATTTTGCGGCGCTTAA-CAAAAAGCGCCGCTAAT
22313993 TATGTTCTTT
Statistics
Matches: 234, Mismatches: 41, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
112 3 0.01
113 64 0.27
114 139 0.59
115 26 0.11
116 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (113 bp):
ACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTAACAAAAAGCGCCGCTAATACTTA
TTTAGCGGCGTTTTATCGTAAGCGCCACTAATTATAGTATACATCAAT
Found at i:22315357 original size:22 final size:23
Alignment explanation
Indices: 22315332--22315381 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
22315322 TTTCTTGTTG
*
22315332 TTTTATCT-CTATTTTGCTACCA
1 TTTTATCTACTATGTTGCTACCA
* *
22315354 TTTTA-CTATTATGTTGCTACTA
1 TTTTATCTACTATGTTGCTACCA
22315376 TTTTAT
1 TTTTAT
22315382 TGTTATTGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.20, C:0.16, G:0.06, T:0.58
Consensus pattern (23 bp):
TTTTATCTACTATGTTGCTACCA
Found at i:22317280 original size:3 final size:3
Alignment explanation
Indices: 22317274--22317310 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
22317264 ATCAAAACAA
22317274 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
22317311 GTCCAAACTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:22320603 original size:14 final size:14
Alignment explanation
Indices: 22320586--22320622 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
22320576 ATAAATTTGA
22320586 AATAATAAT-TATT
1 AATAATAATATATT
22320599 GAATAATAATATATT
1 -AATAATAATATATT
22320614 AA-AATAATA
1 AATAATAATA
22320623 AATTTGAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.32
14 11 0.50
15 4 0.18
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (14 bp):
AATAATAATATATT
Found at i:22322878 original size:38 final size:38
Alignment explanation
Indices: 22322805--22323037 Score: 296
Period size: 38 Copynumber: 6.0 Consensus size: 38
22322795 GGTAGCTTTA
22322805 GCTACACTTATCTGATCAAGTG--AAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAAAGTGATAAGT
*
22322841 GCTATACTTATCTGATCAAGTGAAAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAAAGTGATAAGT
* *
22322879 GCTACACTTATCTGATCAA-TAGACAAAGTGATAAGTGGTAACTTT
1 GCTACACTTATCTGATCAAGT-GA-AAA---A-AAGTGATAA--GT
22322924 AGCTACACTTATCTGATCAAGTG--AAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGAAAAAAAGTGATAAGT
* *
22322961 GCTATACTTATCTAATCAAGTGAAAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAAAGTGATAAGT
*
22322999 GCTATACTTATCTGATCAAGTGAAAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAAAGTGATAAGT
22323037 G
1 G
22323038 GTAGCTTAGC
Statistics
Matches: 174, Mismatches: 9, Indels: 26
0.83 0.04 0.12
Matches are distributed among these distances:
36 41 0.24
37 2 0.01
38 86 0.49
39 11 0.06
40 1 0.01
42 1 0.01
43 10 0.06
45 1 0.01
46 20 0.11
47 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (38 bp):
GCTACACTTATCTGATCAAGTGAAAAAAAGTGATAAGT
Found at i:22322907 original size:74 final size:75
Alignment explanation
Indices: 22322805--22323037 Score: 303
Period size: 74 Copynumber: 3.0 Consensus size: 75
22322795 GGTAGCTTTA
22322805 GCTACACTTATCTGATCAAGT-GAAAAAGTGATAAGTGCTATACTTATCTGATCAAGTGAAAAAA
1 GCTACACTTATCTGATCAAGTAGAAAAAGTGATAAGTGCTATACTTATCTGATCAAGTGAAAAAA
22322869 AGTGATAAGT
66 AGTGATAAGT
*
22322879 GCTACACTTATCTGATCAA-TAGACAAAGTGATAAGTGGTAACTTTAGCTACACTTATCTGATCA
1 GCTACACTTATCTGATCAAGTAGAAAAAGTGATAAGT-G---C--TA--T--ACTTATCTGATCA
22322943 AGTG--AAAAAGTGATAAGT
56 AGTGAAAAAAAGTGATAAGT
* * *
22322961 GCTATACTTATCTAATCAAGTGAAAAAAAGTGATAAGTGCTATACTTATCTGATCAAGTGAAAAA
1 GCTACACTTATCTGATCAAGT-AGAAAAAGTGATAAGTGCTATACTTATCTGATCAAGTGAAAAA
22323026 AAGTGATAAGT
65 AAGTGATAAGT
22323037 G
1 G
22323038 GTAGCTTAGC
Statistics
Matches: 139, Mismatches: 5, Indels: 28
0.81 0.03 0.16
Matches are distributed among these distances:
73 1 0.01
74 50 0.36
75 1 0.01
76 16 0.12
78 3 0.02
80 3 0.02
82 32 0.23
83 2 0.01
84 31 0.22
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (75 bp):
GCTACACTTATCTGATCAAGTAGAAAAAGTGATAAGTGCTATACTTATCTGATCAAGTGAAAAAA
AGTGATAAGT
Found at i:22322982 original size:120 final size:120
Alignment explanation
Indices: 22322769--22323080 Score: 504
Period size: 120 Copynumber: 2.6 Consensus size: 120
22322759 TTTGAGTACT
* *
22322769 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAATAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
*
22322834 GATAAGTGCTATACTTATCTGATCAAGTGAAAAAAAGTGATAAGTGCTACACTTA
66 GATAAGTGCTATACTTATCTAATCAAGTGAAAAAAAGTGATAAGTGCTACACTTA
* *
22322889 TCTGATCAATAGACAAAGTGATAAGTGGTAACTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAATAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
*
22322954 GATAAGTGCTATACTTATCTAATCAAGTGAAAAAAAGTGATAAGTGCTATACTTA
66 GATAAGTGCTATACTTATCTAATCAAGTGAAAAAAAGTGATAAGTGCTACACTTA
* * *
22323009 TCTGATCAAGTGAAAAAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATC-AGGGACAAA
1 TCTGATCAA-T-AGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAA
22323072 -TGATAAGTG
64 GTGATAAGTG
22323081 ATCATACATA
Statistics
Matches: 180, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
119 9 0.05
120 131 0.73
121 21 0.12
122 19 0.11
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (120 bp):
TCTGATCAATAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
GATAAGTGCTATACTTATCTAATCAAGTGAAAAAAAGTGATAAGTGCTACACTTA
Found at i:22330335 original size:42 final size:42
Alignment explanation
Indices: 22330273--22330379 Score: 110
Period size: 42 Copynumber: 2.5 Consensus size: 42
22330263 AGTTAACTCA
* * *
22330273 TATGAGTTTCTGTCTAACCC-TAACGAGTTTCAGTTCAGCTCT
1 TATGAGCTTCAGTTTAACCCTTAACGAGTTTC-GTTCAGCTCT
* ** *
22330315 TTTGAGCTTCAGTTTAACCCTTATGGATTTTCGTTCAGCTCT
1 TATGAGCTTCAGTTTAACCCTTAACGAGTTTCGTTCAGCTCT
*
22330357 TATGAGCTTCCA-TTCAACCCTTA
1 TATGAGCTT-CAGTTTAACCCTTA
22330380 TGGGTTTCCG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 44 0.81
43 10 0.19
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (42 bp):
TATGAGCTTCAGTTTAACCCTTAACGAGTTTCGTTCAGCTCT
Found at i:22330372 original size:21 final size:21
Alignment explanation
Indices: 22330348--22330408 Score: 50
Period size: 21 Copynumber: 2.9 Consensus size: 21
22330338 TGGATTTTCG
*
22330348 TTCAGCTCTTATGAGCTTCCA
1 TTCAGCACTTATGAGCTTCCA
* * * * *
22330369 TTCAACCCTTATGGGTTTCCG
1 TTCAGCACTTATGAGCTTCCA
* *
22330390 TTTAGCACTTATGTGCTTC
1 TTCAGCACTTATGAGCTTC
22330409 TATGCAGCCT
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.41
Consensus pattern (21 bp):
TTCAGCACTTATGAGCTTCCA
Found at i:22330380 original size:42 final size:43
Alignment explanation
Indices: 22330300--22330408 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 43
22330290 CCCTAACGAG
* *
22330300 TTTCAGTTCAGCTCTTTTGAGCTT-CAGTTTAACCCTTATGGAT
1 TTTC-GTTCAGCTCTTATGAGCTTCCAGTTCAACCCTTATGGAT
*
22330343 TTTCGTTCAGCTCTTATGAGCTTCCA-TTCAACCCTTATGGGT
1 TTTCGTTCAGCTCTTATGAGCTTCCAGTTCAACCCTTATGGAT
* * * *
22330385 TTCCGTTTAGCACTTATGTGCTTC
1 TTTCGTTCAGCTCTTATGAGCTTC
22330409 TATGCAGCCT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
42 52 0.90
43 6 0.10
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.43
Consensus pattern (43 bp):
TTTCGTTCAGCTCTTATGAGCTTCCAGTTCAACCCTTATGGAT
Found at i:22333509 original size:42 final size:42
Alignment explanation
Indices: 22333458--22333566 Score: 137
Period size: 42 Copynumber: 2.6 Consensus size: 42
22333448 CCTTAACGAG
* *
22333458 TTTCAGTTCAGCTCTTTTGAGCTTCAGTTTAACCCTCATGGGT
1 TTTC-GTTCAGCTCTTATGAGCTTCAGTTCAACCCTCATGGGT
* *
22333501 TTTCGTTCAGCTCTTATGAGCTTCCGTTCAACCCTTATGGGT
1 TTTCGTTCAGCTCTTATGAGCTTCAGTTCAACCCTCATGGGT
* * * *
22333543 TTCCGTTTAGCACTTATGTGCTTC
1 TTTCGTTCAGCTCTTATGAGCTTC
22333567 TGTGTAGCCT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 54 0.93
43 4 0.07
ACGTcount: A:0.15, C:0.25, G:0.18, T:0.42
Consensus pattern (42 bp):
TTTCGTTCAGCTCTTATGAGCTTCAGTTCAACCCTCATGGGT
Found at i:22333530 original size:21 final size:21
Alignment explanation
Indices: 22333397--22333549 Score: 69
Period size: 21 Copynumber: 7.3 Consensus size: 21
22333387 CATGTTTACT
* * *
22333397 TTCCGTTTAGCTCTCATGAGC
1 TTCCGTTCAACTCTTATGAGC
* * *
22333418 TTCAGTT-AACTCATATGAGT
1 TTCCGTTCAACTCTTATGAGC
* *
22333438 TTCCG-TCTAAC-CTTAACGAGT
1 TTCCGTTC-AACTCTT-ATGAGC
* * *
22333459 TTCAGTTCAGCTCTTTTGAGC
1 TTCCGTTCAACTCTTATGAGC
* * * * * *
22333480 TTCAGTTTAACCCTCATGGGT
1 TTCCGTTCAACTCTTATGAGC
* *
22333501 TTTCGTTCAGCTCTTATGAGC
1 TTCCGTTCAACTCTTATGAGC
* * *
22333522 TTCCGTTCAACCCTTATGGGT
1 TTCCGTTCAACTCTTATGAGC
22333543 TTCCGTT
1 TTCCGTT
22333550 TAGCACTTAT
Statistics
Matches: 94, Mismatches: 33, Indels: 10
0.69 0.24 0.07
Matches are distributed among these distances:
19 1 0.01
20 15 0.16
21 73 0.78
22 5 0.05
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.40
Consensus pattern (21 bp):
TTCCGTTCAACTCTTATGAGC
Found at i:22333558 original size:21 final size:21
Alignment explanation
Indices: 22333495--22333560 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
22333485 TTTAACCCTC
* *
22333495 ATGGGTTTTCGTTCAGCTCTT
1 ATGGGTTTCCGTTCAGCACTT
* * * *
22333516 ATGAGCTTCCGTTCAACCCTT
1 ATGGGTTTCCGTTCAGCACTT
*
22333537 ATGGGTTTCCGTTTAGCACTT
1 ATGGGTTTCCGTTCAGCACTT
22333558 ATG
1 ATG
22333561 TGCTTCTGTG
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.41
Consensus pattern (21 bp):
ATGGGTTTCCGTTCAGCACTT
Found at i:22341914 original size:12 final size:12
Alignment explanation
Indices: 22341897--22341929 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
22341887 CGACCTGTCC
22341897 ATATTAATTTTT
1 ATATTAATTTTT
22341909 ATATT-ATTTTT
1 ATATTAATTTTT
22341920 ATA-TAATTTT
1 ATATTAATTTT
22341930 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:22342087 original size:30 final size:30
Alignment explanation
Indices: 22342051--22342115 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
22342041 CAACTTAACA
*
22342051 AACAAATGCCTCTAAAATATTAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
* *
22342081 AACAAATGTCTTTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
22342111 AACAA
1 AACAA
22342116 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.14, G:0.03, T:0.26
Consensus pattern (30 bp):
AACAAATGCCTCTAAAATAATAACAAAATT
Found at i:22343379 original size:16 final size:15
Alignment explanation
Indices: 22343358--22343405 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
22343348 GATGGGAATA
22343358 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
22343374 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
22343389 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
22343405 A
1 A
22343406 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:22343388 original size:8 final size:8
Alignment explanation
Indices: 22343354--22343405 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
22343344 CAATGATGGG
*
22343354 AATAATAA
1 AATATTAA
22343362 AATATATAA
1 AATAT-TAA
22343371 AATA-TAA
1 AATATTAA
22343378 AATATTAA
1 AATATTAA
*
22343386 AATATCAA
1 AATATTAA
*
22343394 AATATTAG
1 AATATTAA
22343402 AATA
1 AATA
22343406 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:22343405 original size:24 final size:24
Alignment explanation
Indices: 22343353--22343409 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
22343343 ACAATGATGG
*
22343353 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
22343377 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
22343401 GAATAATAA
1 GAATAATAA
22343410 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:22343569 original size:23 final size:22
Alignment explanation
Indices: 22343518--22343571 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
22343508 ATACTACATC
22343518 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
22343537 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
22343560 AATATGTACATA
1 AATATGTACATA
22343572 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:22343618 original size:22 final size:24
Alignment explanation
Indices: 22343534--22343619 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
22343524 TACATATATA
* *
22343534 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
22343557 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
22343582 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
22343605 -AAGATATATACATAA
1 AAAAATATATACATAA
22343620 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:22343669 original size:25 final size:25
Alignment explanation
Indices: 22343641--22343774 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
22343631 GAAAAAATAT
22343641 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
22343666 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* * *
22343691 ATATATATACGTAATATAAAATTTAA-
1 ATATATA-A-ATAATATAATATTAAAG
** *
22343717 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
22343739 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
22343762 AAATAT-AATAATA
1 ATATATAAATAATA
22343775 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 18 0.21
24 5 0.06
25 33 0.39
26 2 0.02
27 10 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:22343698 original size:29 final size:28
Alignment explanation
Indices: 22343608--22343699 Score: 66
Period size: 29 Copynumber: 3.3 Consensus size: 28
22343598 TATAGTTAAG
* * *
22343608 ATATATACATAAGATAACAT-GTAGAAAAA
1 ATATATATATAA-ATAAAATAGTA-AAAAT
* *
22343637 ATATATATATAAAT--AATA-TAATATT
1 ATATATATATAAATAAAATAGTAAAAAT
* *
22343662 AAAGATATATAAATAAAATAGTATAAAAT
1 ATATATATATAAATAAAATAGTA-AAAAT
22343691 ATATATATA
1 ATATATATA
22343700 CGTAATATAA
Statistics
Matches: 47, Mismatches: 11, Indels: 10
0.69 0.16 0.15
Matches are distributed among these distances:
25 14 0.30
26 4 0.09
27 4 0.09
28 4 0.09
29 21 0.45
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (28 bp):
ATATATATATAAATAAAATAGTAAAAAT
Found at i:22344375 original size:30 final size:30
Alignment explanation
Indices: 22344255--22344399 Score: 186
Period size: 30 Copynumber: 4.8 Consensus size: 30
22344245 TAGGTACAAG
* *
22344255 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
22344285 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
*
22344315 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
22344345 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
22344375 TGGTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
22344400 TGAGAAAAGT
Statistics
Matches: 103, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
29 2 0.02
30 101 0.98
ACGTcount: A:0.20, C:0.04, G:0.48, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:22345479 original size:14 final size:14
Alignment explanation
Indices: 22345460--22345494 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
22345450 GAGTCGATTT
22345460 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
22345474 TTGAAAACCAGAAA
1 TTGAAAAACAGAAA
22345488 TTGAAAA
1 TTGAAAA
22345495 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:22345564 original size:89 final size:87
Alignment explanation
Indices: 22345387--22345550 Score: 240
Period size: 89 Copynumber: 1.9 Consensus size: 87
22345377 GAGTTAATTT
* *
22345387 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGA-AAACCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATG
*
22345451 AGTCGATTTTTGAAAAACAGAAA
65 AGTCAATTTTTGAAAAACAGAAA
* *
22345474 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGT--CCCAAGGCTCAACTCACCTCTCGCAATAT
*
22345539 GAGTTAATTTTT
64 GAGTCAATTTTT
22345551 TATGAACATA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
86 3 0.04
87 29 0.43
89 36 0.53
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (87 bp):
TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGA
GTCAATTTTTGAAAAACAGAAA
Found at i:22345609 original size:73 final size:71
Alignment explanation
Indices: 22345514--22345712 Score: 256
Period size: 73 Copynumber: 2.8 Consensus size: 71
22345504 GTGTGAGCCA
* *
22345514 AGGCTCAACTCACCTCTTGCAATATGAGTTAATTTTTTATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTATGAACATAAATTAAAACCACCTCAGC
22345579 GTGTCCTG
66 --GTCCTG
* ** * * **
22345587 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTATGAACATAAATTAAAACCACCTCAGC
*
22345652 GTCTTG
66 GTCCTG
* *
22345658 AGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTT-TGAAACATAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTATG-AACATAAATTAAAA
22345713 AAACGAAAAT
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
71 52 0.48
73 56 0.52
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTATGAACATAAATTAAAACCACCTCAGC
GTCCTG
Found at i:22345822 original size:72 final size:73
Alignment explanation
Indices: 22345711--22346775 Score: 681
Period size: 74 Copynumber: 13.9 Consensus size: 73
22345701 CATAAATTAA
* *
22345711 AAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
22345776 GA-AATT-
66 GATATTTG
*
22345782 AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAA-ACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
22345847 TGATTTTTG
65 TGATATTTG
** * * *
22345856 AAAAATGGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAA-CAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
22345921 TGATTTTTTTT
65 TGA--TATTTG
** * * * ** *
22345932 ACGAACAGAAATTGAAAAGACCTTAGCATGTGAGCCGAGGCTTAACTCACCTCTCGCAATATGAG
1 AAAAACAAAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
* *
22345997 TTAATTTTTG
64 TTGATATTTG
* * * * *
22346007 ATAAATAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTC
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
22346072 GATTTTTG
66 GATATTTG
* * *
22346080 AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACA-AAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
22346145 TGATTTTTTTTT
65 TGA---TATTTG
** * *** *** * *
22346157 ACGAACAGAAATTGAAAA-ACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGACTCAACTCAC
1 AAAAACAAAAATTGAAAATAC-CTCA--G-CGTGTCC-C-G-A-G-G-CTC-A-ACT-----CAC
* *
22346221 CTCTCGCAATATGAGTTAATTTTTG
49 CTCTCGCAATATGAGTTGATATTTG
* * * *
22346246 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
22346311 GATTTTTTTG
66 GA--TATTTG
* * ** * * ** * * * *
22346321 AAAAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAG-CATGTGAGC-CGAGGCTCAACTCA
1 AAAAACAAAAATTG-A-AA-A-TACCT---CAG-CGT--GTCCCGAG-GCTC-A-ACTCACCTCT
* * * *
22346384 C-C--TCTCGCAATATGAGT-TAATT
53 CGCAATAT-G-AGT-TGA-TAT-TTG
**** *
22346406 TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 AAAAACAAA----AATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
22346471 AGTTGATTTTTG
62 AGTTGATATTTG
* * *
22346483 AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACA-AAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
22346548 TGATTTTTTTT
65 TGA--TATTTG
** * * ** *
22346559 ACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTTAACTCACCTCTCGCAATATGAG
1 AAAAACAAAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
* *
22346624 TTAATTTTTG
64 TTGATATTTG
* * * * *
22346634 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAATATGAGTC
1 AAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
22346699 GATTTTTG
66 GATATTTG
* * * *
22346707 AAAAACAGAAATTTAAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACA-AAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
22346772 TGAT
65 TGAT
22346776 TTTTTTTACG
Statistics
Matches: 775, Mismatches: 154, Indels: 127
0.73 0.15 0.12
Matches are distributed among these distances:
71 4 0.01
72 60 0.08
73 115 0.15
74 221 0.29
75 107 0.14
76 28 0.04
77 87 0.11
78 18 0.02
79 13 0.02
80 7 0.01
81 6 0.01
82 6 0.01
83 6 0.01
84 8 0.01
85 18 0.02
86 14 0.02
87 6 0.01
88 1 0.00
89 27 0.03
90 2 0.00
92 21 0.03
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (73 bp):
AAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATATTTG
Found at i:22346056 original size:224 final size:218
Alignment explanation
Indices: 22345474--22348224 Score: 1985
Period size: 224 Copynumber: 12.1 Consensus size: 218
22345464 AAAACAGAAA
* *
22345474 TTGA-AAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATA
1 TTGACAAA-CAGAAATTGAAAATACCTCAGC--GTG-GCCGAGGCTCAACTCACCTCTCGCAATA
* ** * * **
22345538 TGAGTTAATTTTTTATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
62 TGAGTTAATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* *** * * * *
22345603 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCT-TGAGGTTCAAC
127 TCGCAATATGAGTTGATTTTTGAAAAATGGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAAC
* *
22345667 TCACTTCTCGCAATATGAGTTGATTTTT
192 TCACCTCTCGCAATATGAGTTGA-ATTT
* *
22345695 TTGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
1 TTG--AC---------AAACA-G-AAATTGAAAATACCTCAGCGTGGCC-GAGGCTCAACTCACC
* * * * *
22345760 TCTCGCAATATGAGTTGAA--ATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGC
52 TCTCGCAATATGAGTT-AATTTTTGAAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
*
22345822 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATGGAAATTTAAAAATACCTCAGCGTG
115 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATGGAAA-TTGAAAATACCTCAGCGTG
*
22345887 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
179 TCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTT
* * * * *
22345929 TTTACGAACAGAAATTGAAAAGACCTTAGCATGTGAGCCGAGGCTTAACTCACCTCTCGCAATAT
1 TTGACAAACAGAAATTGAAAATACCTCAGC--GTG-GCCGAGGCTCAACTCACCTCTCGCAATAT
* * *
22345994 GAGTTAATTTTTGATAAATAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCT
63 GAGTTAATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* ** *
22346059 CGCAATATGAGTCGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAA
128 CGCAATATGAGTTGATTTTTGAAAAATGGAAA-TTGAAAATACCTCAGCGTGTCC-GAGGCTCAA
*
22346124 CTCACCTCTCGCAATATGAGTTGATTTTTTT
191 CTCACCTCTCGCAATATGAGTTGA---ATTT
* * *
22346155 TTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGACTCAACTCA
1 TT--G-AC----------AAACAGAAATTGAAAATACCTCAGC--GTG-GCCGAGGCTCAACTCA
* *
22346220 CCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGC
50 CCTCTCGCAATATGAGTTAATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
*
22346285 TCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAGAACAGAAATTGA
115 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG----A-A-AAA-T---G----GAAATTGA
* *
22346350 AAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTT
164 AAATACCTCAGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
* *
22346407 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTG-GCCGAGGCTCAACTCACCTCTCGCAATATGA
* * *
22346472 GTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
65 GTTAATTTTTGAAAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* ** ** * * *
22346537 GCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTT
129 GCAATATGAGTTGA--TTTTTGAAAAATGGAAATTGAAAATACCTCAGC--GTG-TCCGAGGCTC
22346602 AACTCACCTCTCGCAATATGAGTT-AATTT
189 AACTCACCTCTCGCAATATGAGTTGAATTT
* * *
22346631 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTG-GCCGAGGCTCAACTCACCTCTCGCAATATGA
** * * *
22346696 GTCGATTTTTGAAAAACAGAAATTTAAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
65 GTTAATTTTTGAAAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
*
22346761 GCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCAT
129 GCAATATGAGTTGA---TTTTT--G-A-A-AAA-TG-------GAAATTGAAAATACCTCAGC--
*
22346826 GTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTT
176 GTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
* * *
22346869 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGGC-CGAGGCTCAACTCACCTCTCGCAATATGA
* * *
22346934 GTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAACTCACCTCTCG
65 GTTAATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
**
22346999 CAATATGAGTTGATTTTAAAAACAGAAATTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAG
130 CAATATGAGTTGATTTT--TGA-A-AAA-TG-------GAAATTGAAAATACCTCAGCGTGT---
* * *
22347064 CCAAGGCTCAACTCACCTCTTGCAATATGAGCT-AATTT
180 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
** * * *
22347102 TTGATGAACATAAATT-AAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAATTGAAAA-TACCTCAGCGTGGCC-GAGGCTCAACTCACCTCTCGCAATATG
* * * * *
22347166 AGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACTTCTC
64 AGTTAATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* *
22347229 GCAATATGAGTTGATTTTTTTTTTAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCG
129 GCAATATGAGTTGA-----TTTTT-GA-A-AAA-T--------GGAAATTGAAAATACCTCAGCG
*
22347294 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA--A
177 TGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
* * * * **
22347335 TT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAAGCTCAACTCACCTCTTACAATATG
1 TTGACAA-ACAGAAATTGAAAATACCTCAGCGTG-GCCGAGGCTCAACTCACCTCTCGCAATATG
* * * *
22347399 AGCTGA-TTTTGAAAAAGTAGAAATT--AA--A----A--G-G---T-----TCAACCCACCTCT
64 AGTTAATTTTTGAAAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* * ** * *
22347444 CGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAAC
128 CGCAATATGAGTTGATTTTTGAAAAATGGAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAAC
* ***
22347509 TCACCTCTCGCAATATGAATTGAAAAA
192 TCACCTCTCGCAATATGAGTTGAATTT
* * * *
22347536 AT-AC-CACAG---TGTG----TA----A---T--CTGAAGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAAT-TGAAAATACCTCAGCGTGGCCGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
22347583 GTTGATTTTTTTTTAAAAAAACTGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTC
65 GTT-A---ATTTTT-GAAAAACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTC
* * * *
22347647 ACCTCTCGCAATATAAGTTGATTTTTTTTTG-AAAATAGAAATTGAAAATACCTCAACGTGTCTT
122 ACCTCTCGCAATATGAGTTGA----TTTTTGAAAAATGGAAATTGAAAATACCTCAGCGTGTC-C
** *
22347711 GAGGCTCAACTCATTTCTCGCAATATAAGTTGAA-TT
182 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
* *
22347747 TTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGGCC-GAGGCTCAACTCACCTCTCGCAATATGA
* * ** *
22347811 GTTGATTTTTTTTTACGAACAGAAATTGAAGAATAGAAATAAGACCTCAGCATGTGAGCC-GAGG
65 GTT-A--ATTTTTGAAAAACAGAAATTG-A-AAT-----T---ACCTCAGC--GTG-TCCTGAGG
* * ** *
22347875 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTG
114 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATGGAAATTGAAAATACCTCAGCGTG
* * *
22347940 TGAACCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTT
179 T---CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---ATTT
* * * ** *
22347986 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGGC-CGAGGCTCAACTCACCTCTCGCAATATGA
**
22348050 GTTGAA-TTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTC
65 GTT-AATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* * ** *
22348113 GCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
129 GCAATATGAGTTGA---TTTTTGAAAAATGGAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCA
*
22348178 ACTCACCTCTAGCAATATGAGTTG-A-TT
190 ACTCACCTCTCGCAATATGAGTTGAATTT
* *
22348205 TTGAAAAACAAAAATT-AAAA
1 TTGACAAACAGAAATTGAAAA
22348225 GGCTTAACTC
Statistics
Matches: 2135, Mismatches: 209, Indels: 374
0.79 0.08 0.14
Matches are distributed among these distances:
183 29 0.01
186 1 0.00
188 10 0.00
189 6 0.00
190 2 0.00
192 1 0.00
193 2 0.00
196 2 0.00
197 2 0.00
199 60 0.03
200 1 0.00
201 4 0.00
208 3 0.00
209 26 0.01
210 1 0.00
211 5 0.00
212 62 0.03
213 5 0.00
214 2 0.00
215 1 0.00
216 26 0.01
218 2 0.00
219 10 0.00
220 10 0.00
221 21 0.01
222 6 0.00
223 72 0.03
224 369 0.17
225 20 0.01
226 52 0.02
227 10 0.00
228 36 0.02
229 3 0.00
230 4 0.00
231 114 0.05
232 74 0.03
233 254 0.12
234 97 0.05
235 52 0.02
236 79 0.04
237 104 0.05
238 202 0.09
239 218 0.10
241 6 0.00
243 1 0.00
245 1 0.00
246 1 0.00
247 3 0.00
249 2 0.00
250 1 0.00
252 5 0.00
254 14 0.01
255 5 0.00
256 34 0.02
257 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (218 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGGCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTAATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTGAAAAATGGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGAATTT
Found at i:22346179 original size:14 final size:14
Alignment explanation
Indices: 22346160--22346188 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22346150 TTTTTTTACG
22346160 AACAGAAATTGAAA
1 AACAGAAATTGAAA
22346174 AACAGAAATTGAAA
1 AACAGAAATTGAAA
22346188 A
1 A
22346189 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:22346233 original size:92 final size:91
Alignment explanation
Indices: 22346077--22346244 Score: 248
Period size: 92 Copynumber: 1.8 Consensus size: 91
22346067 GAGTCGATTT
* * * *
22346077 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCATGTACTGAGACTCAACTCACCTCTCGCAATATG
*
22346142 AGTTGATTTTTTTTTACGAACAGAAA
66 AGTTAATTTTTTTTTACGAACAGAAA
* *
22346168 TTGAAAAACAGAAA-TTGAAAAGACCTCAGCATGTGAGTCGAGACTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCATGT-ACT-GAGACTCAACTCACCTCTCGCAATA
22346232 TGAGTTAATTTTT
64 TGAGTTAATTTTT
22346245 GACAAACAGA
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
90 17 0.25
91 15 0.22
92 36 0.53
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (91 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCATGTACTGAGACTCAACTCACCTCTCGCAATATG
AGTTAATTTTTTTTTACGAACAGAAA
Found at i:22346341 original size:14 final size:14
Alignment explanation
Indices: 22346318--22346352 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
22346308 GTTGATTTTT
22346318 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
22346332 TTGAAGAACAGAAA
1 TTGAAAAACAGAAA
22346346 TTGAAAA
1 TTGAAAA
22346353 GACCTCAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:22346350 original size:89 final size:88
Alignment explanation
Indices: 22346249--22346425 Score: 257
Period size: 89 Copynumber: 2.0 Consensus size: 88
22346239 ATTTTTGACA
** * *
22346249 AACAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGA
1 AACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-A
*
22346313 TTTTTTTGAAAAACAGAAATTGAAG
65 -ATTTTTGAAAAACAGAAATTGAAG
*
22346338 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
*
22346403 ATTTTTGACAAACAGAAATTGAA
65 ATTTTTGAAAAACAGAAATTGAA
22346426 ATTACCTCAG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
89 43 0.54
90 1 0.01
91 35 0.44
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (88 bp):
AACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
TTTTTGAAAAACAGAAATTGAAG
Found at i:22346567 original size:627 final size:620
Alignment explanation
Indices: 22345112--22348224 Score: 2845
Period size: 627 Copynumber: 5.1 Consensus size: 620
22345102 TGTGAACCCA
* *
22345112 AGGCTCAACTCACATCTCGCAATATGAGTTG-ATTTTTGAAAAACAGAAATTTAAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAACAGAAA-TTGAAAATACCTCA
* * * *
22345176 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGA
65 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTAA
* *
22345241 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTTACGAA
128 AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAA
22345306 CAGAAATTGAAGAACATAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCG
193 C---------AG-----AAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCG
22345371 CAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTC
244 CAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTC
*
22345436 ACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTGAAAACCAGAAATTGAAAATACCTC
309 ACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAA-T------------TTAAAAATACCTC
* * * * *
22345501 AGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGTT-A-ATTTTTTATGAACATAAA
361 AGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAA
* * **
22345563 TT--AAAAC------------CACCTCAGCGTGT-CCT-GAGGCTCAACTCACCTCTCGCAATAT
423 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACCTCTCGCAATAT
* *
22345612 GAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACTCA-CTTC
488 GAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTT-
*
22345674 TCGCAATATGAGTTGATTTTTTTG-AAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGC
552 TCGCAATATGAGTTGATTTTTTTGAAAACAGAAATT--AAAAA-G-AAATTGAAAATACCTCAGC
22345738 GTG-TCCTG
613 GTGATCC-G
* *
22345746 AGGCTCAACTCACCTCTCGCAATATGAGTTGAA--ATT-AAAACACAAAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAA-ACAGAAATTGAAAATACCTCA
* **
22345808 GCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATGGAAATTTAAA
65 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA-TTAAA
22345873 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAAC
129 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAAC
* *
22345938 AGAAATTGAAAAGACCTTAGCATGTGAGCCGAGGCTTAACTCACCTCTCGCAATATGAGTTAATT
194 AGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATT
* *
22346003 TTTGATAAATAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
259 TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
22346068 AGTCGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
324 AGTCGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
22346133 CGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGC
389 CGCAATATGAGTTGA-TTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGC
* *
22346198 ATGTGAGTCGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAA
453 ATGTGAGTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAA
**
22346263 TTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACA
518 TTACCTCAGCGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTG-AAAACA
* *
22346328 GAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCG
582 GAAATT-AA-AA-AGAAATTGAAAATACCTCAGC--GTGATCCG
* *
22346372 AGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGACAAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAACAGAAATTGAAAATACCTCAG
22346436 CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
66 CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA-TTAAAA
22346501 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACA
130 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACA
*
22346566 GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTTAACTCACCTCTCGCAATATGAGTTAATTT
195 GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
*
22346631 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAATATGA
260 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
22346696 GTCGATTTTTGAAAAACAGAAATTTAAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
325 GTCGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
22346761 GCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCAT
390 GCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCAT
*
22346826 GTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATT
455 GTGAGTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATT
*
22346891 ACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAGA
520 ACCTCAGCGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGA-AAACAGA
* *
22346954 AATT-----GAAA-T-----TACCTCAGCGTGTTCTG
584 AATTAAAAAGAAATTGAAAATACCTCAGCGTGATCCG
* *
22346980 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAACAGAAATTGAAAACCAGAAATTGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT-----------TTGAAAAACAGAAATTGA
* * * * * **
22347045 AAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAA
55 AAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
* **
22347110 CATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
118 CAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * * ** * *
22347173 TTTTGACAAACAAAAATTGAAATTACCTCAGC--GT---CTTGAGGCTCAACTCACTTCTCGCAA
183 TTTTTACGAACAGAAATTGAAAAGACCTCAGCATGTGAGC-CGAGGCTCAACTCACCTCTCGCAA
* * * *
22347233 TATGAGTTGATTTTTTTTTTAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTC
247 TATGAGTT-A----ATTTTT-GAC---------AAACA-G-AAATTGAAATTACCTCAGCGTGTC
* * ** * *
22347298 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATT-AAAACACA-AAAATTGAAAATACC
295 CCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAA-ACAGAAATTTAAAAATACC
* * * ** *
22347360 TCAGCGTGCCCCGAAGCTCAACTCACCTCTTACAATATGAGCTGA----TTTT--G-A-A-AAA-
359 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAAT
* *
22347415 -G-----TAGAAATT----A-A----A--A---G-GT------TCAACCCACCTCTCGCAATATG
424 TGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACCTCTCGCAATATG
* * * *
22347453 AGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTC
489 AGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTTTC
* * *
22347518 GCAATATGA----A-----TTG--AA-A-AAA-TACCACAG---TGTG----TA----ATC-TGA
554 GCAATATGAGTTGATTTTTTTGAAAACAGAAATTA-AAAAGAAAT-TGAAAATACCTCAGCGTGA
22347557 ----
617 TCCG
* * *
22347557 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAAAACTGAAATTGAAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---ATTTTT-GAAAAACAGAAATTGAAAATACC
** * *
22347621 TCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTG-AAAATAG
62 TCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGAAAAACAG
* * * ** * *
22347685 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA--ATTT
121 AAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * ** *
22347748 TGA-AAACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATAT
186 TTACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATAT
* * * **
22347809 GAGTTGATTTTTTTTTACGAACAGAAATTGAAGAATAGAAATAAGACCTCAGCATGTGAGCCGAG
250 GAGTT-A--ATTTTTGACAAACAGAAATTG-A-AAT-----T---ACCTCAGC--GTGTCCCGAG
** * * *
22347874 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCG
300 GCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCG
* *
22347938 TGTGAACC-AAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTT-----------TTG-
365 TGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGA
* * ** * ** *
22347989 AAAACAGAAATTGAAAATACCTCA--ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGT
427 AAAACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
22348052 TGAATTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA-TTTCTCGC
492 TGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTT-TCGC
** * *
22348115 AATATGAGTTGATTTTTTT-TTAAC--------AACAGAAATTGAAATTACCTCAGCGTG-TCCT
556 AATATGAGTTGATTTTTTTGAAAACAGAAATTAAAAAGAAATTGAAAATACCTCAGCGTGATCC-
22348170 G
620 G
* *
22348171 AGGCTCAACTCACCTCTAGCAATATGAGTTG-A-TTTTGAAAAACAAAAATT-AAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAACAGAAATTGAAAA
22348225 GGCTTAACTC
Statistics
Matches: 2140, Mismatches: 170, Indels: 364
0.80 0.06 0.14
Matches are distributed among these distances:
559 6 0.00
560 2 0.00
561 5 0.00
566 1 0.00
568 2 0.00
569 63 0.03
570 2 0.00
571 73 0.03
572 83 0.04
573 46 0.02
574 27 0.01
575 2 0.00
576 30 0.01
577 12 0.01
579 4 0.00
580 1 0.00
581 6 0.00
582 4 0.00
583 2 0.00
585 1 0.00
586 8 0.00
589 2 0.00
590 1 0.00
593 92 0.04
594 1 0.00
595 55 0.03
596 29 0.01
599 6 0.00
600 1 0.00
601 4 0.00
602 30 0.01
603 2 0.00
604 21 0.01
605 22 0.01
607 5 0.00
608 39 0.02
609 18 0.01
610 15 0.01
614 9 0.00
615 58 0.03
616 6 0.00
617 149 0.07
619 40 0.02
620 37 0.02
621 122 0.06
622 48 0.02
623 41 0.02
624 41 0.02
625 15 0.01
626 197 0.09
627 355 0.17
628 3 0.00
630 72 0.03
631 73 0.03
632 112 0.05
633 8 0.00
634 30 0.01
635 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (620 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAACAGAAATTGAAAATACCTCAG
CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAA
TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAG
AAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTT
TGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TCGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATG
TGAGTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTA
CCTCAGCGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAACAGAAA
TTAAAAAGAAATTGAAAATACCTCAGCGTGATCCG
Found at i:22346805 original size:14 final size:14
Alignment explanation
Indices: 22346786--22346814 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22346776 TTTTTTTACG
22346786 AACAGAAATTGAAA
1 AACAGAAATTGAAA
22346800 AACAGAAATTGAAA
1 AACAGAAATTGAAA
22346814 A
1 A
22346815 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:22346858 original size:91 final size:88
Alignment explanation
Indices: 22346704--22346888 Score: 257
Period size: 91 Copynumber: 2.1 Consensus size: 88
22346694 GAGTCGATTT
* * *
22346704 TTGAAAAACAGAAATTTAAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
22346769 AGTTGATTTTTTTTACGAACAGAAA
66 AGTTGA--TTTTTGACAAACAGAAA
*
22346794 TTGAAAAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
22346857 ATGAGTTGATTTTTGACAAACAGAAA
63 ATGAGTTGATTTTTGACAAACAGAAA
22346883 TTGAAA
1 TTGAAA
22346889 TTACCTCAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
89 34 0.40
90 14 0.16
91 36 0.42
92 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (88 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTGACAAACAGAAA
Found at i:22346952 original size:73 final size:73
Alignment explanation
Indices: 22346794--22347032 Score: 367
Period size: 73 Copynumber: 3.3 Consensus size: 73
22346784 CGAACAGAAA
* ** ** *
22346794 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGACAAACAGAAATTGAAATTACCTCAGC--GTGTTCTGAGGCTCAACTCACCTCTCGCAATAT
22346859 GAGTTGATTT
64 GAGTTGATTT
22346869 TTGACAAACAGAAATTGAAATTACCTCAGCGTG-TCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTTC-TGAGGCTCAACTCACCTCTCGCAATATG
22346933 AGTTGATTT
65 AGTTGATTT
22346942 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGA
22347007 GTTGA-TT
66 GTTGATTT
*
22347014 TT-AAAAACAGAAATTGAAA
1 TTGACAAACAGAAATTGAAA
22347033 ACCAGAAATT
Statistics
Matches: 156, Mismatches: 6, Indels: 8
0.92 0.04 0.05
Matches are distributed among these distances:
71 16 0.10
72 5 0.03
73 106 0.68
74 2 0.01
75 27 0.17
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (73 bp):
TTGACAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:22347038 original size:14 final size:14
Alignment explanation
Indices: 22347016--22347047 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
22347006 AGTTGATTTT
22347016 AAAAACAGAAATTG
1 AAAAACAGAAATTG
*
22347030 AAAACCAGAAATTG
1 AAAAACAGAAATTG
22347044 AAAA
1 AAAA
22347048 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.66, C:0.09, G:0.12, T:0.12
Consensus pattern (14 bp):
AAAAACAGAAATTG
Found at i:22347102 original size:87 final size:85
Alignment explanation
Indices: 22346942--22347102 Score: 225
Period size: 87 Copynumber: 1.9 Consensus size: 85
22346932 GAGTTGATTT
* * **
22346942 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTGCCAAGGCTCAACTCACCTCTCGCAATATGA
* *
22347007 GTTGATTTTAAAAACAGAAA
66 GCTAATTTTAAAAACAGAAA
*
22347027 TTGA-AAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATA
1 TTGACAAA-CAGAAATTGAAAATACCTCAGCGTGT--GCCAAGGCTCAACTCACCTCTCGCAATA
22347091 TGAGCTAATTTT
63 TGAGCTAATTTT
22347103 TGATGAACAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
84 3 0.05
85 29 0.44
87 34 0.52
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (85 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGTGCCAAGGCTCAACTCACCTCTCGCAATATGA
GCTAATTTTAAAAACAGAAA
Found at i:22347132 original size:233 final size:227
Alignment explanation
Indices: 22346168--22348220 Score: 1771
Period size: 233 Copynumber: 9.1 Consensus size: 227
22346158 CGAACAGAAA
* ** * ** *
22346168 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGACTCAACTCACCTCTCGCAATAT
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGT-CCT-GAGGCTCAACTCACCTCTCGCAATAT
* * *
22346233 GAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTT
64 GAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* *
22346298 CGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCA
129 CGCAATATGAGTTGA---TTTT----AAC--AAATTGAA-AACAGAAATTGAAAATACCTCAGCG
22346363 TGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
184 TGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
*
22346407 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
22346472 GTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
66 GTTGATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* * * * *
22346537 GCAATATGAGTTGATTTT-----TTTTACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGA
130 GCAATATGAGTTGATTTTAACAAATTGA-AAACAGAAATTGAAAATACCTCAGCGTGTGAGCCGA
*
22346597 GGCTTAACTCACCTCTCGCAATATGAGTTAATTT
194 GGCTCAACTCACCTCTCGCAATATGAGTTAATTT
* *
22346631 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
22346696 GTCGATTTTTGAAAAACAGAAATTTAAAAATACTTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
66 GTTGATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* *
22346761 GCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCAT
130 GCAATATGAGTTGA----TTTT---AAC--AAATTG-AAAACAGAAATTGAAAATACCTCAGCGT
*
22346826 GTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
185 GTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
*
22346869 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
22346934 GTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAACTCACCTCTCG
66 GTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
22346999 CAATATGAGTTGATTTTAAAAACAGAAATTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAG
131 CAATATGAGTTGATTTT---AAC--AAATTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTGAG
* * *
22347064 CCAAGGCTCAACTCACCTCTTGCAATATGAGCTAATTT
190 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
** * * **
22347102 TTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
22347167 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACTTCTCG
66 GTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
* *
22347230 CAATATGAGTTGATTTTTTTTTTAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGT
131 CAATATGAGTTGA------TTTT-AAC--AAATTGAAAACA-G-AAATTGAAAATACCTCAGCGT
*
22347295 GT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA--A
185 GTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTT
* * * * * * **
22347335 TT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAAGCTCAACTCACCTCTTACAATATG
1 TTGACAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * * * *
22347399 AGCTGA-TTTTGA-AAA-AG---TAGAAATTA----A---------AAGGTTCAACCCACCTCTC
65 AGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* *
22347445 GCAATATGAGTTGA-TT---C---TTGACAAACAGAAATTGAAATTACCTCATCGTGT---CCTG
130 GCAATATGAGTTGATTTTAACAAATTGA-AAACAGAAATTGAAAATACCTCAGCGTGTGAGCC-G
22347500 AGGCTCAACTCACCTCTCGCAATAT--G--AA---
193 AGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
* * * *
22347528 TT--------GAAA---AAA-TACCACAGTGTGTAATCTGAAGCTCAACTCACCTCTCGCAATAT
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
* * * * *
22347581 GAGTTGATTTTTTTTTAAAAAAACTGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAAC
64 GAGTTGA----TTTTT-GACAAACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAAC
* *** * *
22347645 TCACCTCTCGCAATATAAGTTGATTTT---TTTTTGAAAATAGAAATTGAAAATACCTCAACGTG
121 TCACCTCTCGCAATATGAGTTGATTTTAACAAATTGAAAACAGAAATTGAAAATACCTCAGCGTG
* ** *
22347707 T---CTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAA-TT
186 TGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTT
22347747 TTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
22347811 GTTGATTTTTTTTTACGAACAGAAATTGAAGAATAGAAATAAGACCTCAGCATGTGAGCC-GAGG
66 GTTGA---TTTTTGACAAACAGAAATTG-A-AAT-----T---ACCTCAGC--GTG-TCCTGAGG
* *
22347875 CTCAACTCACCTCTCGCAATATGAGTT-AATTT------TTGACAAACAGAAATTGAAATTACCT
115 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAACAAATTGA-AAACAGAAATTGAAAATACCT
* * * *
22347933 CAGCGTGTGAACCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTT
179 CAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-A---ATTT
* * * ** *
22347986 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* **
22348050 GTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCG
66 GTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
** * *
22348114 CAATATGAGTTGATTTT----TTTTTAACAACAGAAATTGAAATTACCTCAGCGTGT---CCTGA
131 CAATATGAGTTGATTTTAACAAATTGAA-AACAGAAATTGAAAATACCTCAGCGTGTGAGCC-GA
* *
22348172 GGCTCAACTCACCTCTAGCAATATGAGTTGA-TT
194 GGCTCAACTCACCTCTCGCAATATGAGTTAATTT
* *
22348205 TTGAAAAACAAAAATT
1 TTGACAAACAGAAATT
22348221 AAAAGGCTTA
Statistics
Matches: 1561, Mismatches: 146, Indels: 233
0.80 0.08 0.12
Matches are distributed among these distances:
181 10 0.01
182 3 0.00
183 31 0.02
185 3 0.00
188 4 0.00
189 1 0.00
190 3 0.00
191 1 0.00
193 2 0.00
194 9 0.01
197 1 0.00
198 1 0.00
199 50 0.03
200 4 0.00
201 4 0.00
205 1 0.00
209 31 0.02
210 2 0.00
212 51 0.03
213 4 0.00
214 1 0.00
216 29 0.02
217 2 0.00
219 8 0.01
220 10 0.01
222 2 0.00
223 35 0.02
224 244 0.16
225 9 0.01
226 46 0.03
227 17 0.01
228 41 0.03
229 3 0.00
230 12 0.01
231 38 0.02
232 16 0.01
233 259 0.17
234 30 0.02
235 66 0.04
236 75 0.05
237 103 0.07
238 203 0.13
239 96 0.06
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (227 bp):
TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTAACAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGG
CTCAACTCACCTCTCGCAATATGAGTTAATTT
Found at i:22347143 original size:160 final size:159
Alignment explanation
Indices: 22346869--22347194 Score: 451
Period size: 160 Copynumber: 2.0 Consensus size: 159
22346859 GAGTTGATTT
* **
22346869 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTGTCTCAAGGCTCAACTCACCTCTCGCAATATGA
* * * ** *
22346934 GTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAACTCACCTCTCG
65 GCTAATTTTTGACAAACAGAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
*
22346999 CAATATGAGTTGA-TTTT-AAAAACAGAAA
130 CAATATGAGTTGATTTTTGAAAAACAAAAA
*
22347027 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTTGCAATA
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCGTGT---CTCAAGGCTCAACTCACCTCTCGCAATA
** *
22347091 TGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
62 TGAGCTAATTTTTGACAAACAGAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
22347156 TCGCAATATGAGTTGATTTTTGACAAACAAAAA
127 TCGCAATATGAGTTGATTTTTGAAAAACAAAAA
22347189 TTGAAA
1 TTGAAA
22347195 TTACCTCAGC
Statistics
Matches: 147, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
157 3 0.02
158 29 0.20
160 95 0.65
161 5 0.03
162 15 0.10
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (159 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCTCAAGGCTCAACTCACCTCTCGCAATATGAG
CTAATTTTTGACAAACAGAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTGAAAAACAAAAA
Found at i:22347257 original size:73 final size:72
Alignment explanation
Indices: 22347067--22347267 Score: 251
Period size: 73 Copynumber: 2.8 Consensus size: 72
22347057 GTGTGAGCCA
* * * *
22347067 AGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATAAACATAAATTAAAACCACCTCAGC
22347132 GTGTCCTG
66 G-GTCCTG
* * * **
22347140 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATAAACATAAATTAAAACCACCTCAGC
*
22347205 -GTCTTG
66 GGTCCTG
* **
22347211 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTTAAACATAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGATAAACATAAATTAAAA
22347268 AAACGAAAAT
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
71 36 0.33
73 74 0.67
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (72 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATAAACATAAATTAAAACCACCTCAGC
GGTCCTG
Found at i:22347379 original size:72 final size:73
Alignment explanation
Indices: 22347259--22347400 Score: 214
Period size: 72 Copynumber: 2.0 Consensus size: 73
22347249 TTTTAAACAT
* * * * *
22347259 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAAGCTCAACTCACCTCTCACAAT
22347324 ATGAGTTG
66 ATGAGTTG
* *
22347332 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAAGCTCAACTCACCTCTTACAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAAGCTCAACTCACCTCTCACAAT
22347396 ATGAG
66 ATGAG
22347401 CTGATTTTGA
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
72 57 0.92
73 5 0.08
ACGTcount: A:0.40, C:0.24, G:0.14, T:0.22
Consensus pattern (73 bp):
AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAAGCTCAACTCACCTCTCACAAT
ATGAGTTG
Found at i:22347734 original size:76 final size:75
Alignment explanation
Indices: 22347552--22348206 Score: 636
Period size: 76 Copynumber: 8.5 Consensus size: 75
22347542 CAGTGTGTAA
* * *
22347552 TCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAAAACTGAAATTGAAAA
1 TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTT--GAAAACAGAAATTGAAAA
*
22347617 TACCTCAGCATGTG
64 TACCTCA--ACGTG
* * * *
22347631 AACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAATAGAAATTGAAAAT
1 -TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAAAT
22347696 ACCTCAACGTG
65 ACCTCAACGTG
** * * *
22347707 TCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA----ATTTTGAAAACAGAAATTGAAATT
1 TC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAAAT
*
22347768 ACCTCAGCGTG
65 ACCTCAACGTG
*
22347779 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTT-ACGAACAGAAATTGAAGA
1 T-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGA-AAACAGAAATT---G-
*
22347843 ATAGAAATAAGACCTCAGCATGTG
60 --A-AAAT---ACCTCA--ACGTG
* * * *
22347867 AGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-A---ATTTTTGACAAACAGAAATTGAAAT
1 -TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGA-AAACAGAAATTGAAAA
*
22347928 TACCTCAGCGTG
64 TACCTCAACGTG
** *
22347940 TGAACCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAA
1 T---CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAA
22348005 ATACCTCAACGTG
63 ATACCTCAACGTG
** * * *
22348018 TCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA----ATTTTGAAAACAGAAATTGAAATT
1 TC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAAAT
*
22348079 ACCTCAGCGTG
65 ACCTCAACGTG
** *
22348090 TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTT-AACAACAGAAATTGAAAT
1 T-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAA-AACAGAAATTGAAAA
*
22348154 TACCTCAGCGTG
64 TACCTCAACGTG
*
22348166 TCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 T-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
22348207 GAAAAACAAA
Statistics
Matches: 491, Mismatches: 49, Indels: 74
0.80 0.08 0.12
Matches are distributed among these distances:
72 129 0.26
73 5 0.01
75 42 0.09
76 149 0.30
78 52 0.11
79 9 0.02
80 41 0.08
82 2 0.00
83 3 0.01
84 5 0.01
85 12 0.02
86 6 0.01
87 1 0.00
88 35 0.07
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (75 bp):
TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATA
CCTCAACGTG
Found at i:22347820 original size:148 final size:147
Alignment explanation
Indices: 22347558--22348220 Score: 760
Period size: 148 Copynumber: 4.3 Consensus size: 147
22347548 GTAATCTGAA
* * * * *
22347558 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAAAACTGAAATTGAAAATACCTC
1 GCTCAACTCACCTCTCGCAATATAAGTTGA----ATTTT--GAAAACAGAAATTGAAATTACCTC
* *
22347623 AGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAATAGAAA
60 AGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAA
22347688 TTGAAAATACCTCAACGTGTCTTGAG
122 TTGAAAATACCTCAACGTGTCTTGAG
**
22347714 GCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
* *
22347779 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTT-ACGAACAGAAATTGAAGA
66 TCC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGA-AAACAGAAATT---G-
* * *
22347843 ATAGAAATAAGACCTCAGCATGTGAGC-CGAG
125 --A-AAAT---ACCTCA--ACGTG-TCTTGAG
*
22347874 GCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGACAAACAGAAATTGAAATTACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATAAGTTGAA-TTTTGA-AAACAGAAATTGAAATTACCTCAGCG
*
22347938 TGTGAACCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGA
64 TGT---CCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGA
22348003 AAATACCTCAACGTGTCTTGAG
126 AAATACCTCAACGTGTCTTGAG
**
22348025 GCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
** * *
22348090 TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTT-AACAACAGAAATTGAAAT
66 TCC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAA-AACAGAAATTGAAAA
* *
22348154 TACCTCAGCGTGTCCTGAG
129 TACCTCAACGTGTCTTGAG
* * *
22348173 GCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT
1 GCTCAACTCACCTCTCGCAATATAAGTTGAATTTTG-AAAACAGAAATT
22348221 AAAAGGCTTA
Statistics
Matches: 443, Mismatches: 38, Indels: 60
0.82 0.07 0.11
Matches are distributed among these distances:
147 13 0.03
148 158 0.36
150 54 0.12
151 39 0.09
152 6 0.01
153 6 0.01
154 1 0.00
155 4 0.01
156 31 0.07
157 1 0.00
158 6 0.01
159 2 0.00
160 39 0.09
161 30 0.07
163 50 0.11
164 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (147 bp):
GCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
TCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATA
CCTCAACGTGTCTTGAG
Found at i:22348370 original size:70 final size:70
Alignment explanation
Indices: 22348224--22348398 Score: 219
Period size: 70 Copynumber: 2.5 Consensus size: 70
22348214 AAAAATTAAA
* * * * * **
22348224 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
22348288 CCCCG
66 CCCCG
* *
22348293 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAA-AAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
22348357 GTCTTG
65 GCCCCG
22348363 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
22348399 CCTTGGAAAG
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
69 25 0.27
70 62 0.68
71 4 0.04
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:22356176 original size:18 final size:18
Alignment explanation
Indices: 22356140--22356175 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
22356130 TTTAGAGCAC
*
22356140 TATAAAAAAATTCTAAAA
1 TATAAAAAAATCCTAAAA
22356158 TATAAGAAAAATCCTAAA
1 TATAA-AAAAATCCTAAA
22356176 TCTAATAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.64, C:0.08, G:0.03, T:0.25
Consensus pattern (18 bp):
TATAAAAAAATCCTAAAA
Done.