Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 64 of 208
Found at i:23911341 original size:79 final size:81
Alignment explanation
Indices: 23911205--23911389 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
23911195 TTGAATGATG
*
23911205 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
23911269 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
23911284 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
23911346 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
23911364 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23911390 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:23911403 original size:40 final size:40
Alignment explanation
Indices: 23911206--23911389 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
23911196 TGAATGATGT
* * * *
23911206 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
23911246 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
23911286 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
23911324 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
23911365 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
23911390 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:23911411 original size:79 final size:79
Alignment explanation
Indices: 23911258--23911422 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
23911248 GGACTAAGAT
* **
23911258 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
23911323 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
23911337 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
23911400 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
23911416 CCGAAGG
1 CCGAAGG
23911423 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:23913092 original size:24 final size:24
Alignment explanation
Indices: 23913061--23913226 Score: 73
Period size: 24 Copynumber: 6.6 Consensus size: 24
23913051 CATATAACAA
23913061 GAAGCTCATAAGAGCCATAATCGG
1 GAAGCTCATAAGAGCCATAATCGG
** *
23913085 GAAGCTCATGCGAGCCATTATCGG
1 GAAGCTCATAAGAGCCATAATCGG
* * * * *
23913109 GTAGCT-TTGGAGAGCCATTAATTGA
1 GAAGCTCAT-AAGAGCCA-TAATCGG
* ***
23913134 GAAGCTCATGAGAGAGCCTTTAATTTT
1 GAAGCTCAT-A-AGAGCC-ATAATCGG
* * *
23913161 AAAGCTCATGAAAGAGCCCTTAATCAG
1 GAAGCTCAT--AAGAG-CCATAATCGG
** * *
23913188 GAAGCTCCGAAGAGCTATATATTGG
1 GAAGCTCATAAGAGCCATA-ATCGG
23913213 GAAGCTCATAAGAG
1 GAAGCTCATAAGAG
23913227 TTGCGGTGTG
Statistics
Matches: 105, Mismatches: 29, Indels: 15
0.70 0.19 0.10
Matches are distributed among these distances:
23 1 0.01
24 36 0.34
25 29 0.28
26 2 0.02
27 34 0.32
28 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23
Consensus pattern (24 bp):
GAAGCTCATAAGAGCCATAATCGG
Found at i:23913156 original size:27 final size:26
Alignment explanation
Indices: 23913118--23913184 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
23913108 GGTAGCTTTG
23913118 GAGAGCCATTAATTGAGAAGCTCATGA
1 GAGAGCCATTAATTGA-AAGCTCATGA
* *
23913145 GAGAGCCTTTAATTTTAAAGCTCATGA
1 GAGAGCCATTAA-TTGAAAGCTCATGA
* *
23913172 AAGAGCCCTTAAT
1 GAGAGCCATTAAT
23913185 CAGGAAGCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.03
27 31 0.89
28 3 0.09
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (26 bp):
GAGAGCCATTAATTGAAAGCTCATGA
Found at i:23913192 original size:27 final size:27
Alignment explanation
Indices: 23913134--23913194 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
23913124 CATTAATTGA
* * ***
23913134 GAAGCTCATGAGAGAGCCTTTAATTTT
1 GAAGCTCATGAAAGAGCCCTTAATCAG
*
23913161 AAAGCTCATGAAAGAGCCCTTAATCAG
1 GAAGCTCATGAAAGAGCCCTTAATCAG
23913188 GAAGCTC
1 GAAGCTC
23913195 CGAAGAGCTA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAGCTCATGAAAGAGCCCTTAATCAG
Found at i:23913306 original size:24 final size:25
Alignment explanation
Indices: 23913279--23913330 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
23913269 GATGCTCAAA
* *
23913279 AGAGCTAT-TAACGGGAAGCTCATG
1 AGAGCCATATAACAGGAAGCTCATG
* *
23913303 AGAGCCATATATCAGGAAGCTCTTG
1 AGAGCCATATAACAGGAAGCTCATG
23913328 AGA
1 AGA
23913331 TTCATATATC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (25 bp):
AGAGCCATATAACAGGAAGCTCATG
Found at i:23913379 original size:24 final size:25
Alignment explanation
Indices: 23913292--23913379 Score: 88
Period size: 25 Copynumber: 3.6 Consensus size: 25
23913282 GCTATTAACG
* **
23913292 GGAAGCTCATGAGAGCCATATATCA
1 GGAAGCTCTTGAGATTCATATATCA
23913317 GGAAGCTCTTGAGATTCATATATCA
1 GGAAGCTCTTGAGATTCATATATCA
** * **
23913342 TAAAACTCAAGAGATTCA-ATATCA
1 GGAAGCTCTTGAGATTCATATATCA
*
23913366 GGATGCTCTTGAGA
1 GGAAGCTCTTGAGA
23913380 GCTAATAACG
Statistics
Matches: 49, Mismatches: 14, Indels: 1
0.77 0.22 0.02
Matches are distributed among these distances:
24 14 0.29
25 35 0.71
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26
Consensus pattern (25 bp):
GGAAGCTCTTGAGATTCATATATCA
Found at i:23914929 original size:190 final size:188
Alignment explanation
Indices: 23914600--23914944 Score: 654
Period size: 190 Copynumber: 1.8 Consensus size: 188
23914590 TCGAAACTAA
23914600 TATTTCGATTTCACTGAAAACGGCTATTACACACTCGTATTTTTGAGTTACTTCATTTTGATTTA
1 TATTTCGATTTCACTGAAAACGGCTATTACACACTCGTATTTTTGAGTTACTTCATTTTGATTTA
*
23914665 TAAGGGTTTCATGATACTCTATTTTGTAGATCTCATTATTTTTTGGCATTGGTTGATGATTTCTC
66 TAAGGGTTTCATGATACTCTATTTTGTAGATCTCATTATTTTTTGGCATTGGCTGATGATTTCTC
23914730 TCATGCTATTTGGGTATATCTCATTATTTTTTGGCATTGGTTGATGATTTCTCTCGTGC
131 TCATGCTATTTGGGTATATCT-ATTATTTTTTGGCATTGGTTGATGATTTCTCTCGTGC
23914789 TATTTCGATTTCACTGAAAACGGGCTATTACACACTCGTATTTTTGAGTTACTTCATTTTGATTT
1 TATTTCGATTTCACTGAAAAC-GGCTATTACACACTCGTATTTTTGAGTTACTTCATTTTGATTT
23914854 ATAAGGGTTTCATGATACTCTATTTTGTAGATCTCATTATTTTTTGGCATTGGCTGATGATTTCT
65 ATAAGGGTTTCATGATACTCTATTTTGTAGATCTCATTATTTTTTGGCATTGGCTGATGATTTCT
*
23914919 CTCGTGCTATTTGGGTATATCTATTA
130 CTCATGCTATTTGGGTATATCTATTA
23914945 ATTACTAAGG
Statistics
Matches: 153, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
189 25 0.16
190 128 0.84
ACGTcount: A:0.21, C:0.15, G:0.17, T:0.47
Consensus pattern (188 bp):
TATTTCGATTTCACTGAAAACGGCTATTACACACTCGTATTTTTGAGTTACTTCATTTTGATTTA
TAAGGGTTTCATGATACTCTATTTTGTAGATCTCATTATTTTTTGGCATTGGCTGATGATTTCTC
TCATGCTATTTGGGTATATCTATTATTTTTTGGCATTGGTTGATGATTTCTCTCGTGC
Found at i:23923019 original size:35 final size:35
Alignment explanation
Indices: 23922980--23923048 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
23922970 ACTTGCCTCT
23922980 TCCCACTCTCCCATGCTGTCTGCCACCAACACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAACACCAC
* *
23923015 TCCCACTCTTCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAACACCA
23923049 TCACACACCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.19, C:0.49, G:0.10, T:0.22
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAACACCAC
Found at i:23924390 original size:23 final size:23
Alignment explanation
Indices: 23924355--23924408 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
23924345 TCATTATTTT
*
23924355 CTATTATTGTTATTAATATACTA
1 CTATTATTCTTATTAATATACTA
* * *
23924378 TTATTATTCTTATTAATGTATTA
1 CTATTATTCTTATTAATATACTA
23924401 CTATTATT
1 CTATTATT
23924409 TTTTTTACTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.57
Consensus pattern (23 bp):
CTATTATTCTTATTAATATACTA
Found at i:23924457 original size:3 final size:3
Alignment explanation
Indices: 23924197--23924439 Score: 58
Period size: 3 Copynumber: 81.7 Consensus size: 3
23924187 TTATATTTAT
* * * * *
23924197 TTA TTAA TT- TTA TTA TTT TTG CTA TTA TTA TTA TTA TCA TTA TTT
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
23924242 TTA TT- CTG TTA TTG TTA TTA TT- TCTC TTG TTG TT- TTCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TT-A TTA TTA
* * * * *
23924286 TT- TATA TTA TTG TTA GTA CTA TTA GTA CTCT- TTA GT- TTA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA -T-TA TTA TTA TTA TTA TTA
** * * * *
23924331 TTA TTA TTA TT- TCG TCA TTA TTT TCTA TTA TTG TTA TTA ATA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
* * * * * *
23924375 CTA TTA TTA TTC TTA TTAA TGTA TTA CTA TTA TTT TTT TTA CT- TTA
1 TTA TTA TTA TTA TTA TT-A T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* *
23924421 TTA TTA -CA TTA TTA CTA TT
1 TTA TTA TTA TTA TTA TTA TT
23924440 GCTATCATCA
Statistics
Matches: 175, Mismatches: 45, Indels: 40
0.67 0.17 0.15
Matches are distributed among these distances:
2 14 0.08
3 146 0.83
4 13 0.07
5 2 0.01
ACGTcount: A:0.25, C:0.07, G:0.05, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:23924526 original size:3 final size:3
Alignment explanation
Indices: 23924518--23924581 Score: 101
Period size: 3 Copynumber: 21.3 Consensus size: 3
23924508 ATATATTTAC
** *
23924518 ATT ATT ATT GCT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
23924566 ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT A
23924582 GACATAACAT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:23930546 original size:11 final size:10
Alignment explanation
Indices: 23930529--23930582 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 10
23930519 CAGTGGAGGC
23930529 AAAAAAAAAG
1 AAAAAAAAAG
23930539 ACAAAAAAAAG
1 A-AAAAAAAAG
*
23930550 TAAAAAAACGAG
1 -AAAAAAA-AAG
23930562 AAAATAAAAAG
1 AAAA-AAAAAG
23930573 CAAAAAAAAA
1 -AAAAAAAAA
23930583 ACCAAATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
10 1 0.03
11 26 0.70
12 10 0.27
ACGTcount: A:0.81, C:0.06, G:0.09, T:0.04
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:23930589 original size:23 final size:22
Alignment explanation
Indices: 23930527--23930593 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 22
23930517 TTCAGTGGAG
23930527 GCAAAAAAAAAGACAAA-AAAAA
1 GCAAAAAAAAA-ACAAATAAAAA
* *
23930549 GTAAAAAAACGAGA-AAATAAAAA
1 GCAAAAAAA--AAACAAATAAAAA
23930572 GCAAAAAAAAAACCAAATAAAA
1 GCAAAAAAAAAA-CAAATAAAA
23930594 GAAAAACCTC
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
21 2 0.06
22 11 0.31
23 22 0.61
24 1 0.03
ACGTcount: A:0.78, C:0.09, G:0.09, T:0.04
Consensus pattern (22 bp):
GCAAAAAAAAAACAAATAAAAA
Found at i:23931029 original size:6 final size:6
Alignment explanation
Indices: 23931020--23931065 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
23931010 AAAAAAAACG
* *
23931020 AAAAGA AAAATA AAAA-A AGAA-A AAAAGAA AAAAGA AAAAGA AAAAG
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAG-A AAAAGA AAAAGA AAAAG
23931066 GAGAGGCCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
5 8 0.23
6 21 0.60
7 6 0.17
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:23931029 original size:15 final size:13
Alignment explanation
Indices: 23931009--23931064 Score: 58
Period size: 15 Copynumber: 3.8 Consensus size: 13
23930999 TACTTCACTT
23931009 GAAAAAAAACGAAAA
1 GAAAAAAAA--AAAA
23931024 GAAAAATAAAAAAA
1 GAAAAA-AAAAAAA
23931038 GAAAAAAAGAAAAAA
1 G-AAAAAA-AAAAAA
23931053 GAAAAAGAAAAA
1 GAAAAA-AAAAA
23931065 GGAGAGGCCA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
14 15 0.41
15 19 0.51
16 3 0.08
ACGTcount: A:0.84, C:0.02, G:0.12, T:0.02
Consensus pattern (13 bp):
GAAAAAAAAAAAA
Found at i:23931036 original size:8 final size:8
Alignment explanation
Indices: 23931025--23931058 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
23931015 AAACGAAAAG
*
23931025 AAAAATAA
1 AAAAAGAA
23931033 AAAAAGAA
1 AAAAAGAA
23931041 AAAAAG-A
1 AAAAAGAA
23931048 AAAAAGAA
1 AAAAAGAA
23931056 AAA
1 AAA
23931059 GAAAAAGGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (8 bp):
AAAAAGAA
Found at i:23931042 original size:7 final size:7
Alignment explanation
Indices: 23931020--23931064 Score: 58
Period size: 7 Copynumber: 6.4 Consensus size: 7
23931010 AAAAAAAACG
23931020 AAAAGAA
1 AAAAGAA
23931027 AAATA-AA
1 AAA-AGAA
23931034 AAAAGAAA
1 AAAAG-AA
23931042 AAAAGAA
1 AAAAGAA
23931049 AAAAG-A
1 AAAAGAA
23931055 AAAAGAA
1 AAAAGAA
23931062 AAA
1 AAA
23931065 GGAGAGGCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
6 7 0.21
7 19 0.56
8 8 0.24
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (7 bp):
AAAAGAA
Found at i:23932305 original size:132 final size:131
Alignment explanation
Indices: 23932068--23932567 Score: 772
Period size: 132 Copynumber: 3.8 Consensus size: 131
23932058 TGAAGTCATT
* * **
23932068 AAAGCAAACCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTC-TGTCTTCCTA
* *
23932133 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAATTAGATCGC
65 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
23932198 AG
130 AG
23932200 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCATGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTC-TGTCTTCCTA
* *
23932265 TATTGGTAGGAAGTGGATCGACGATGCAGAT-TCTGTCTTCCTATATTGGTAG-GAAGTAGATCG
65 TATTGGTAGGAAGTGGATCGACGATGCAGATCT-TGTCTTCCCATATTGGTGGCGAAGTAGATCG
23932328 AAG
129 AAG
23932331 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGT-CTGTCTTCCTA
* *
23932396 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGACGAAGTAGATCGA
65 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
23932461 AG
130 AG
* * * *
23932463 AAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGAT-GCAGATTCTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAG-GTCTGTCTTCCTA
* * *
23932527 TATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
65 TATTGGTAGGAAGTGGATCGACG-ATGCAGATCTTGTCTTC
23932568 ATGTATTGGC
Statistics
Matches: 342, Mismatches: 20, Indels: 12
0.91 0.05 0.03
Matches are distributed among these distances:
131 157 0.46
132 185 0.54
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (131 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCTGTCTTCCTAT
ATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAA
G
Found at i:23932458 original size:219 final size:219
Alignment explanation
Indices: 23932230--23932772 Score: 840
Period size: 219 Copynumber: 2.5 Consensus size: 219
23932220 GTATTGGCGT
* * * * * *
23932230 GAAGTAGATCAAAGATAA-CAGGTCATGTCTTCCTATATTGGTAG-GAAGTGGATCGACGATGCA
1 GAAGTAGATCGAAGA-AAGCAGATCATATCTTCATATATTGG-AGTGAAGTAGATCGAAGATGCA
23932293 GATTCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
64 GATTCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
*
23932358 CGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGC
129 CGTGAAGTAGATCAAAGATAACAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGC
23932423 AGATCTTGTCTTCCCATACTGGTGAC
194 AGATCTTGTCTTCCCATACTGGTGAC
* * *
23932449 GAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGA
1 GAAGTAGATCGAAGAAAGCAGATCATATCTTCATATATTGGAGTGAAGTAGATCGAAGATGCAGA
23932514 TTCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCG
66 TTCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCG
*
23932579 TGAAGTAGATCAAAGATAACAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATTGACGATGCAG
131 TGAAGTAGATCAAAGATAACAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAG
*
23932644 ATCTTGTCTTCCCATACTGGTGGC
196 ATCTTGTCTTCCCATACTGGTGAC
* * *
23932668 GAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATTGCAG
1 GAAGTAGATCGAAGAAAGCAGATCATATCTTCATATATTGGAGTGAAGTAGATCGAAGA-TGCAG
* * * *
23932733 A-TCTTGCCTTCCTGTATTTGGCAGAGAAGCAGATCGAAGA
65 ATTC-TGTCTTCCTATA-TTGGTAG-GAAGTAGATCGAAGA
23932773 TGGGAGATTT
Statistics
Matches: 302, Mismatches: 16, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
218 3 0.01
219 263 0.87
220 16 0.05
221 6 0.02
222 14 0.05
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (219 bp):
GAAGTAGATCGAAGAAAGCAGATCATATCTTCATATATTGGAGTGAAGTAGATCGAAGATGCAGA
TTCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCG
TGAAGTAGATCAAAGATAACAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAG
ATCTTGTCTTCCCATACTGGTGAC
Found at i:23932567 original size:263 final size:263
Alignment explanation
Indices: 23932068--23932594 Score: 810
Period size: 263 Copynumber: 2.0 Consensus size: 263
23932058 TGAAGTCATT
** *
23932068 AAAGCAAACCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAAACCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTA
* * * *
23932133 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAATTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGACGAAGTAGATCGA
*
23932198 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCATGTCTTCC
131 AGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCATGTCTTCC
* * * *
23932263 TATATTGGTAGGAAGTGGATCGACGATGCAGATTCTGTCTTCCTATATTGGTAG-GAAGTAGATC
196 TATATTGGTAGGAAGTAGATCGAAGAAGCAGATTCTGTCTTCATATATTGG-AGTGAAGTAGATC
*
23932327 GAAG
260 AAAG
* *
23932331 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTA
1 AAAGCAAACCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTA
23932396 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGACGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGACGAAGTAGATCGA
* * *
23932461 AGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGAT-GCAGATTC-TGTCTTC
131 AGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAG-GTCATGTCTTC
* *
23932524 CTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA-TCTTGTCTTCATGTATTGGCGTGAAGTAGA
195 CTATATTGGTAGGAAGTAGATCGAAG-AAGCAGATTC-TGTCTTCATATATTGGAGTGAAGTAGA
23932588 TCAAAG
258 TCAAAG
23932594 A
1 A
23932595 TAACAGGTCC
Statistics
Matches: 240, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
262 37 0.15
263 203 0.85
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (263 bp):
AAAGCAAACCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTA
TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGACGAAGTAGATCGA
AGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCATGTCTTCC
TATATTGGTAGGAAGTAGATCGAAGAAGCAGATTCTGTCTTCATATATTGGAGTGAAGTAGATCA
AAG
Found at i:23932718 original size:263 final size:261
Alignment explanation
Indices: 23932080--23932774 Score: 772
Period size: 263 Copynumber: 2.6 Consensus size: 261
23932070 AGCAAACCTT
* * ** *
23932080 GTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAGGAA
1 GTCTTCATATATTGGAGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTATATTGGTAGGAA
* * *
23932145 GTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAATTAGATCGCAGAAAGCAGATC
66 GTGGATCGACGATGCAGATCTTGTCTTCCCATATTGG-CGCGAAGTAGATCGAAGAAAGCAGATC
* *
23932210 TTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCATGTCTTCCTATATTGGTAGG
130 TTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT-GCAGGTCATGTCTTCCTATATTGGTAGG
* * * * *
23932275 AAGTGGATCGACGATGCAGATTCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGAT
194 AAGTAGATCGAAGAAGCAGATTCTGTCTTCATATATTGGTAGGAAGTAGATCAAAGAAAGCAGAT
**
23932340 CTT
259 CCG
* * * *
23932343 GTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTATATTGGTAGGAA
1 GTCTTCATATATTGGAGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTATATTGGTAGGAA
* *
23932408 GTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGACGAAGTAGATCGAAGAAAGCAGATC
66 GTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGCG-CGAAGTAGATCGAAGAAAGCAGATC
* *
23932473 TTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGATTC-TGTCTTCCTATATTGGTAGG
130 TTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAG-GTCATGTCTTCCTATATTGGTAGG
* *
23932537 AAGTAGATCGAAGAAAGCAGA-TCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAA-C
194 AAGTAGATCGAAG-AAGCAGATTC-TGTCTTCATATATTGGTAG-GAAGTAGATCAAAGA-AAGC
*
23932599 AGGTCCG
255 AGATCCG
* * ** * * * * *
23932606 GTCTTCCTATATTGGTAG-GAAGTGGATTGACGAT-GCAGATCTTGTCTTCCCATACTGGTGGCG
1 GTCTTCATATATTGG-AGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTATATTGGTAG-G
* * * * *** * **
23932669 AAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATTGCAGA
64 AAGTGGATCGACG-ATGCAGATCTTGTCTTCCCATATTGGCGCGAAGTAGATCGAAGAAAGCAGA
* * * *
23932734 TCTTGCCTTCCTGTATTTGGCAGAGAAGCAGATCGAAGATG
128 TCTTGTCTTCATGTA-TTGGC-GTGAAGTAGATCGAAGATG
23932775 GGAGATTTTA
Statistics
Matches: 370, Mismatches: 51, Indels: 20
0.84 0.12 0.05
Matches are distributed among these distances:
262 59 0.16
263 265 0.72
264 29 0.08
265 17 0.05
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (261 bp):
GTCTTCATATATTGGAGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTATATTGGTAGGAA
GTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGCGCGAAGTAGATCGAAGAAAGCAGATCT
TGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGGTCATGTCTTCCTATATTGGTAGGAA
GTAGATCGAAGAAGCAGATTCTGTCTTCATATATTGGTAGGAAGTAGATCAAAGAAAGCAGATCC
G
Found at i:23932744 original size:132 final size:131
Alignment explanation
Indices: 23932077--23932774 Score: 550
Period size: 132 Copynumber: 5.3 Consensus size: 131
23932067 TAAAGCAAAC
* * * * * * *
23932077 CTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAG-GTCTTGTCTTCCTATATTGGTA
1 CTTGTCTTCCTGTATTGGAGTGAAGTAGATCGAAGAT-GCAGATTC-TGTCTTCCCATACTGGTA
* * * * *** * * * * *
23932141 GGAAGTGGATCGACG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAATTAGATCGCAGAAAGC
64 GGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
23932205 AGAT
128 AGAT
* * * * * * *
23932209 CTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAG-GTCATGTCTTCCTATATTGGTA
1 CTTGTCTTCCTGTATTGGAGTGAAGTAGATCGAAGAT-GCAGATTC-TGTCTTCCCATACTGGTA
* * * * * * * *
23932273 GGAAGTGGATCGACG-ATGCAGAT-TCTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAG
64 GGAAGTAGATCGAAGAAAGCAGATCT-TATCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
23932335 CAGAT
127 CAGAT
* * * * * * * *
23932340 CTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTATATTGGTAG
1 CTTGTCTTCCTGTATTGGAGTGAAGTAGATCGAAGAT-GCAGATTCTGTCTTCCCATACTGGTAG
* * * * *** * * * *
23932405 GAAGTGGATCGACG-ATGCAGATCTTGTCTTCCCATACTGGTGACGAAGTAGATCGAAGAAAGCA
65 GAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCG-TGAAGTAGATCGAAGATAGCA
23932469 GAT
129 GAT
* * * * *
23932472 CTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGATTCTGTCTTCCTATATTGGTAGG
1 CTTGTCTTCCTGTATTGGAGTGAAGTAGATCGAAGATGCAGATTCTGTCTTCCCATACTGGTAGG
* * * *
23932537 AAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGG
66 AAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGA
23932602 T
131 T
** * * * * *
23932603 CCGGTCTTCCTATATTGGTAG-GAAGTGGATTGACGATGCAGA-TCTTGTCTTCCCATACTGGTG
1 CTTGTCTTCCTGTATTGG-AGTGAAGTAGATCGAAGATGCAGATTC-TGTCTTCCCATACTGGTA
*
23932666 GCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATTGC
64 G-GAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
23932731 AGAT
128 AGAT
* * *
23932735 CTTGCCTTCCTGTATTTGGCAGAGAAGCAGATCGAAGATG
1 CTTGTCTTCCTGTA-TTGG-AGTGAAGTAGATCGAAGATG
23932775 GGAGATTTTA
Statistics
Matches: 499, Mismatches: 56, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
130 3 0.01
131 221 0.44
132 256 0.51
133 6 0.01
134 13 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (131 bp):
CTTGTCTTCCTGTATTGGAGTGAAGTAGATCGAAGATGCAGATTCTGTCTTCCCATACTGGTAGG
AAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGA
T
Found at i:23932993 original size:88 final size:92
Alignment explanation
Indices: 23932887--23933283 Score: 232
Period size: 88 Copynumber: 4.4 Consensus size: 92
23932877 CCTAAGCAGT
* **
23932887 AGTGGAGTAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCC
1 AGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAGTACATTGAAGCC
*
23932949 GATA-ATTCTATCTTCCTGTATTTGAC
66 GATAGATTCTATCTCCCTGTATTTGAC
* * * * * * * * * * * **
23932975 AGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGAT
1 AGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAGTACATTGAAGCC
* * * *
23933040 GGTAGATTTTACCTCCCTG-A-CT-AC
66 GATAGATTCTATCTCCCTGTATTTGAC
* * ** ** * * * * * * *
23933064 AGTGGAGTACATTGAAGCCGATA-ATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
1 AGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAGTACATTGAAG-C
* * *
23933128 TG-TAGA-TCT-TGCCTTCCTGTATTTGGC
65 CGATAGATTCTAT--CTCCCTGTATTTGAC
* * **
23933155 AG-CGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGC
1 AGTGGAA-TAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAGTACATTGAAGC
*
23933216 CGATA-ATTCTATCTCCCTGTATTTGGC
65 CGATAGATTCTATCTCCCTGTATTTGAC
* * * *
23933243 AGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAT
1 AGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGTAT
23933284 TTGGCAGCGA
Statistics
Matches: 220, Mismatches: 71, Indels: 34
0.68 0.22 0.10
Matches are distributed among these distances:
87 2 0.01
88 112 0.51
89 47 0.21
90 7 0.03
91 29 0.13
92 23 0.10
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (92 bp):
AGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAGTACATTGAAGCC
GATAGATTCTATCTCCCTGTATTTGAC
Found at i:23933085 original size:134 final size:134
Alignment explanation
Indices: 23932701--23933502 Score: 1256
Period size: 134 Copynumber: 6.0 Consensus size: 134
23932691 CTTATCTTCA
* *
23932701 TGTA-TTGGC-GT-GAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAGAAGC
1 TGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
* * *
23932763 AGATCGAAGATGGGAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
65 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
23932828 CTCCC
130 CTCCC
* ** * **** * * * *
23932833 TGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATC-TCC-CTAAGCAGTAGTGGAGTA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
23932896 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
66 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
*
23932961 TTCC
131 TCCC
*
23932965 TGTATTTGACAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
* *
23933030 GATCGAAGATGGTAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
66 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
23933095 TCCC
131 TCCC
*
23933099 TGTATTTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
23933164 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
66 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
23933229 TCCC
131 TCCC
23933233 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
* *
23933298 GATCAAAGATGGCAGATTTTACCTCCCTGACTATAGTGGAGTACATTGAAGCCGATAACTCTATC
66 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
23933363 TCCC
131 TCCC
*
23933367 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
* * * * * * *
23933432 GGTCGAAGATGGCGGATTTTACCTCCCTGATTACGGTGGAGTACATTAAAGCC-AGTAGTTCTAT
66 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGA-TAATTCTAT
23933496 CTCCC
130 CTCCC
23933501 TG
1 TG
23933503 GGCAACAGTA
Statistics
Matches: 614, Mismatches: 50, Indels: 10
0.91 0.07 0.01
Matches are distributed among these distances:
132 116 0.19
133 12 0.02
134 483 0.79
135 3 0.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (134 bp):
TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
TCCC
Found at i:23933156 original size:46 final size:46
Alignment explanation
Indices: 23932685--23933424 Score: 251
Period size: 46 Copynumber: 16.6 Consensus size: 46
23932675 ATCGAAGAAA
* * * *
23932685 GCAGATCTTATCTTCATGTA-TTGGC-GT-GAAGTAGATCGAAGATT
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATT
* * * * * *
23932729 GCAGATCTTGCCTTCCTGTATTTGGCAG-AGAAGCAGATCGAAGATG
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATT
* * * * * * **
23932775 GGAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CC
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * *
23932817 G-ATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
1 GCAGATCT-TACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * **** * * ** *
23932863 ACAGATCTTATCTCCC--TAAGCAGTAGTGGAGTAGATCAAAGATG
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * * * * **
23932907 GCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CC
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * * *
23932949 G-ATAAT-TCTATCTTCCTGTATTTGACAGTGGAATAGATTGAAGATT
1 GCA-GATCT-TACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * * * * *
23932995 GCAGATCTTGCCTTCCTGTATTTGGCAG-CGAAGCAGATCGAAGATG
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATT
* * * * * * **
23933041 GTAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CC
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* *
23933083 G-ATAAT-TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
1 GCA-GATCT-TACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * * * * ** *
23933129 GTAGATCTTGCCTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATG
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATT
* * * * * **
23933175 GCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CC
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* *
23933217 G-ATAAT-TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
1 GCA-GATCT-TACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * * * ** *
23933263 GCAGATCTTGCCTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATG
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATT
* * * * **
23933309 GCAGATTTTACCTCCCTG-ACTAT---AGTGGAGTACATTGAAG-CC
1 GCAGATCTTACCTCCCTGTA-TTTGGCAGTGGAATAGATTGAAGATT
* * *
23933351 G-ATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
1 GCAGATCT-TACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
*
23933397 GCAGATCTTACCTTCCTGTATTTGGCAG
1 GCAGATCTTACCTCCCTGTATTTGGCAG
23933425 CGAAGCAGGT
Statistics
Matches: 492, Mismatches: 154, Indels: 98
0.66 0.21 0.13
Matches are distributed among these distances:
41 12 0.02
42 57 0.12
43 56 0.11
44 64 0.13
45 99 0.20
46 190 0.39
47 14 0.03
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (46 bp):
GCAGATCTTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
Found at i:23933972 original size:35 final size:35
Alignment explanation
Indices: 23933933--23934001 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
23933923 ACTTGCCTCT
23933933 TCCCACTCTCCCATGCTGTCTGCCACCAACACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAACACCAC
*
23933968 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAACACCA
23934002 TCACACACCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.19, C:0.51, G:0.10, T:0.20
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAACACCAC
Found at i:23934342 original size:22 final size:22
Alignment explanation
Indices: 23934317--23934361 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
23934307 AAAAGGGGGG
* *
23934317 ATCGATGGTATTTTGGGGAAGA
1 ATCGATGGTATTTTAGAGAAGA
*
23934339 ATCGATTGTATTTTAGAGAAGA
1 ATCGATGGTATTTTAGAGAAGA
23934361 A
1 A
23934362 CGTTTGTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.33
Consensus pattern (22 bp):
ATCGATGGTATTTTAGAGAAGA
Found at i:23935346 original size:23 final size:22
Alignment explanation
Indices: 23935296--23935371 Score: 64
Period size: 23 Copynumber: 3.4 Consensus size: 22
23935286 TCATTATTTT
* *
23935296 CTATTATTGTTATTAATATACTA
1 CTATTATTCTTATTAAT-TATTA
*
23935319 TTATTATTCTTATTAATGTATTA
1 CTATTATTCTTATTAAT-TATTA
* * *
23935342 CTATTTTTTTTACTTTATTATTA
1 CTATTATTCTTA-TTAATTATTA
23935365 C-ATTATT
1 CTATTATT
23935372 ACTATTGCTA
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
22 5 0.12
23 34 0.79
24 4 0.09
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.61
Consensus pattern (22 bp):
CTATTATTCTTATTAATTATTA
Found at i:23935464 original size:3 final size:3
Alignment explanation
Indices: 23935456--23935519 Score: 101
Period size: 3 Copynumber: 21.3 Consensus size: 3
23935446 ATATATTTAC
** *
23935456 ATT ATT ATT GCT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
23935504 ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT A
23935520 GACATAACAT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:23940584 original size:36 final size:36
Alignment explanation
Indices: 23940536--23940604 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
23940526 ACTTGATTAA
* *
23940536 TACAATACTAATATTTTTATAATTCAATTAGAACAT
1 TACAATACTAATATTTTAAAAATTCAATTAGAACAT
*
23940572 TACAATATTAATATTTTAAAAATTCAATTAGAA
1 TACAATACTAATATTTTAAAAATTCAATTAGAA
23940605 GTTTAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.48, C:0.09, G:0.03, T:0.41
Consensus pattern (36 bp):
TACAATACTAATATTTTAAAAATTCAATTAGAACAT
Found at i:23947402 original size:16 final size:16
Alignment explanation
Indices: 23947381--23947448 Score: 102
Period size: 16 Copynumber: 4.2 Consensus size: 16
23947371 TTTGGTTCAC
23947381 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGA
23947397 TGTATTGGATTAGA-A
1 TGTATTGGATTAGAGA
*
23947412 GTGTATTGGATTAGAGG
1 -TGTATTGGATTAGAGA
*
23947429 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGA
23947445 TGTA
1 TGTA
23947449 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
15 1 0.02
16 48 0.98
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGA
Found at i:23947420 original size:32 final size:32
Alignment explanation
Indices: 23947381--23947448 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
23947371 TTTGGTTCAC
23947381 TGTATTGGATTAGAGATGTATTGGATTAGAAG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
* *
23947413 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
23947445 TGTA
1 TGTA
23947449 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGATGTATTGGATTAGAAG
Found at i:23951334 original size:52 final size:52
Alignment explanation
Indices: 23951272--23951370 Score: 180
Period size: 52 Copynumber: 1.9 Consensus size: 52
23951262 AAACCAAACG
23951272 ACGTGTTAAAGAGGTATTAAGTGGGGCCCACCGATTAAGGGTGTATTAGCTT
1 ACGTGTTAAAGAGGTATTAAGTGGGGCCCACCGATTAAGGGTGTATTAGCTT
* *
23951324 ACGTGTTAAAGAGGTATTAGGTGGGGCCCACCGATTAGGGGTGTATT
1 ACGTGTTAAAGAGGTATTAAGTGGGGCCCACCGATTAAGGGTGTATT
23951371 GGCTAAGCCA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.25, C:0.13, G:0.33, T:0.28
Consensus pattern (52 bp):
ACGTGTTAAAGAGGTATTAAGTGGGGCCCACCGATTAAGGGTGTATTAGCTT
Found at i:23953907 original size:16 final size:16
Alignment explanation
Indices: 23953868--23953909 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
23953858 AAAAATATAA
*
23953868 AAATATATTTTAAAAT
1 AAATATATTTAAAAAT
*
23953884 -ATTAATATTTAAAAAT
1 AAAT-ATATTTAAAAAT
23953900 AAATATATTT
1 AAATATATTT
23953910 GCAAAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
15 2 0.10
16 17 0.81
17 2 0.10
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATATATTTAAAAAT
Found at i:23957716 original size:15 final size:15
Alignment explanation
Indices: 23957696--23957746 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
23957686 ACAACAGTAT
23957696 AACGTAAGTGACTAA
1 AACGTAAGTGACTAA
* *
23957711 AACGTAA-T-ATTTTA
1 AACGTAAGTGA-CTAA
*
23957725 AACATAAGTGACTAA
1 AACGTAAGTGACTAA
23957740 AACGTAA
1 AACGTAA
23957747 TATTTTAAAC
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
13 1 0.04
14 9 0.33
15 16 0.59
16 1 0.04
ACGTcount: A:0.49, C:0.12, G:0.14, T:0.25
Consensus pattern (15 bp):
AACGTAAGTGACTAA
Found at i:23957737 original size:29 final size:29
Alignment explanation
Indices: 23957700--23957775 Score: 134
Period size: 29 Copynumber: 2.6 Consensus size: 29
23957690 CAGTATAACG
23957700 TAAGTGACTAAAACGTAATATTTTAAACA
1 TAAGTGACTAAAACGTAATATTTTAAACA
23957729 TAAGTGACTAAAACGTAATATTTTAAACA
1 TAAGTGACTAAAACGTAATATTTTAAACA
* *
23957758 TAAGTGACCAAAATGTAA
1 TAAGTGACTAAAACGTAA
23957776 CTTAAAGTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.49, C:0.11, G:0.12, T:0.29
Consensus pattern (29 bp):
TAAGTGACTAAAACGTAATATTTTAAACA
Found at i:23961260 original size:20 final size:18
Alignment explanation
Indices: 23961230--23961281 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 18
23961220 AGTTTTATTC
23961230 AATAA-TTAATTATTATA
1 AATAATTTAATTATTATA
*
23961247 ATTATAATTTAATTATTTTA
1 A--ATAATTTAATTATTATA
23961267 AAT-ATTTAATTATTA
1 AATAATTTAATTATTA
23961282 GAACTTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
17 12 0.40
18 2 0.07
19 4 0.13
20 12 0.40
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AATAATTTAATTATTATA
Found at i:23961273 original size:17 final size:17
Alignment explanation
Indices: 23961230--23961281 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 17
23961220 AGTTTTATTC
*
23961230 AATAATTAATTATTATA
1 AATATTTAATTATTATA
*
23961247 ATTATAATTTAATTATTTTA
1 A--AT-ATTTAATTATTATA
23961267 AATATTTAATTATTA
1 AATATTTAATTATTA
23961282 GAACTTCTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 12 0.41
18 2 0.07
19 2 0.07
20 13 0.45
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
AATATTTAATTATTATA
Found at i:23965218 original size:11 final size:11
Alignment explanation
Indices: 23965187--23965275 Score: 72
Period size: 11 Copynumber: 8.0 Consensus size: 11
23965177 CAAATATATC
*
23965187 TAAAATAGTAA
1 TAAAATAATAA
*
23965198 CAAAATTAATAA
1 TAAAA-TAATAA
23965210 TAAAATAATAA
1 TAAAATAATAA
* *
23965221 -ATATATAATAT
1 TA-AAATAATAA
*
23965232 TCAAATAATAA
1 TAAAATAATAA
*
23965243 TAAAATAATAG
1 TAAAATAATAA
* *
23965254 CAATATAATAA
1 TAAAATAATAA
*
23965265 TAAAATGATAA
1 TAAAATAATAA
23965276 CAAAGCAATG
Statistics
Matches: 59, Mismatches: 16, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
10 1 0.02
11 49 0.83
12 9 0.15
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.29
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:23966836 original size:131 final size:133
Alignment explanation
Indices: 23966660--23966915 Score: 381
Period size: 131 Copynumber: 1.9 Consensus size: 133
23966650 TAAAAAACAC
* * * *
23966660 ACTAAATTAATACATTTCAAACATAATGTACTTAAAGAATGTAAAATAATAAAATATGAGAATAA
1 ACTAAATTAATACATTTCAAACATAATCTACTAAAAGAATGTAAAATAATAAAATACGAAAATAA
* * *
23966725 TATA-TTTT-TTGAAAGTGAGAAAATCTGGAAAAAAAATACGAACAAATAGCCGAAATAATATTT
66 TATATTTTTATTGAAAGTAAGAAAATCAGGAAAAAAAATACGAACAAAGAGCCGAAATAATATTT
23966788 TTT
131 TTT
* *
23966791 ACTAAATTAATACATTTCAAAGATAATCTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
1 ACTAAATTAATACATTTCAAACATAATCTACTAAAAGAATGTAAAATAATAAAATACGAAAATAA
* * * *
23966856 TATATTTTTATTGAAAGTAATAAAATCAGGGAAAAAAATACGAATAAAGGGCCGAAATAA
66 TATATTTTTATTGAAAGTAAGAAAATCAGGAAAAAAAATACGAACAAAGAGCCGAAATAA
23966916 GGGTTTTTTT
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
131 63 0.57
132 4 0.04
133 43 0.39
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.29
Consensus pattern (133 bp):
ACTAAATTAATACATTTCAAACATAATCTACTAAAAGAATGTAAAATAATAAAATACGAAAATAA
TATATTTTTATTGAAAGTAAGAAAATCAGGAAAAAAAATACGAACAAAGAGCCGAAATAATATTT
TTT
Found at i:23967077 original size:156 final size:154
Alignment explanation
Indices: 23966791--23967243 Score: 691
Period size: 156 Copynumber: 2.9 Consensus size: 154
23966781 AATATTTTTT
* *
23966791 ACTAAATTAATACATTTCAAAGATAATCTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
1 ACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
23966856 TATATTTTTATTGAAAGTAATAAAATCAGGGAAAAAAATACGAATAAAGGGCCGAAATAAGGGTT
66 TAT-TTTTTATTGAAAGTAATAAAATC-GGGAAAAAAATACGAATAAAGGGCCGAAATAAGGGTT
23966921 TTTTTA-AAATTTTATTTAAAAAACAC
129 TTTTTATAAA-TTTATTTAAAAAACAC
* *
23966947 AGTAAATTAATACATTTTAAACATAATGTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
1 ACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
* *
23967012 TATGTTTTTATTGAAAGTAATAAATATCGGGAAAAAAATACGAACAAATGGCCGAAATAAGGGTT
66 TAT-TTTTTATTGAAAGTAATAAA-ATCGGGAAAAAAATACGAATAAAGGGCCGAAATAAGGGTT
23967077 TTTTTATAAATTTATTTAAAAAACAC
129 TTTTTATAAATTTATTTAAAAAACAC
* * *
23967103 ACTAAATTAATATATTTCAAATATAATGTACTAAAATAATGTAAAATAATAAAATTA-AAAAATA
1 ACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA-TACGAAAATA
* *
23967167 GTATATTTT-TT-AAAGGTAATAAAATCCGGGAAAAAAATACGAATAAAGGGCCGAAATAAGGG-
65 ATATTTTTTATTGAAA-GTAATAAAAT-CGGGAAAAAAATACGAATAAAGGGCCGAAATAAGGGT
23967229 TTTTTTACTAAATTT
128 TTTTTTA-TAAATTT
23967244 GTTTTGAAGT
Statistics
Matches: 275, Mismatches: 16, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
153 12 0.04
154 51 0.19
155 4 0.01
156 200 0.73
157 8 0.03
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (154 bp):
ACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
TATTTTTTATTGAAAGTAATAAAATCGGGAAAAAAATACGAATAAAGGGCCGAAATAAGGGTTTT
TTTATAAATTTATTTAAAAAACAC
Found at i:23967633 original size:15 final size:15
Alignment explanation
Indices: 23967613--23967641 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23967603 ACATACCAGC
23967613 ATAAATTTAATTATT
1 ATAAATTTAATTATT
23967628 ATAAATTTAATTAT
1 ATAAATTTAATTAT
23967642 AATTACACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATAAATTTAATTATT
Found at i:23967753 original size:15 final size:15
Alignment explanation
Indices: 23967733--23967761 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23967723 ACATACCTGC
23967733 ATAAATTTAATTATT
1 ATAAATTTAATTATT
23967748 ATAAATTTAATTAT
1 ATAAATTTAATTAT
23967762 AATTACACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATAAATTTAATTATT
Found at i:23967806 original size:120 final size:120
Alignment explanation
Indices: 23967593--23967831 Score: 460
Period size: 120 Copynumber: 2.0 Consensus size: 120
23967583 TACTATGGAA
23967593 TTGGTCATTCACATACCAGCATAAATTTAATTATTATAAATTTAATTATAATTACACATAACAAT
1 TTGGTCATTCACATACCAGCATAAATTTAATTATTATAAATTTAATTATAATTACACATAACAAT
23967658 TTTACAGCATAAGCTCAATTCCGACCCGATCTTGACGATTGTCCAACATGATAGC
66 TTTACAGCATAAGCTCAATTCCGACCCGATCTTGACGATTGTCCAACATGATAGC
*
23967713 TTGGTCATTCACATACCTGCATAAATTTAATTATTATAAATTTAATTATAATTACACATAACAAT
1 TTGGTCATTCACATACCAGCATAAATTTAATTATTATAAATTTAATTATAATTACACATAACAAT
*
23967778 TTTACAGCATAAGCTCAATTCTGACCCGATCTTGACGATTGTCCAACATGATAG
66 TTTACAGCATAAGCTCAATTCCGACCCGATCTTGACGATTGTCCAACATGATAG
23967832 TTTCGCTGAG
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 117 1.00
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.34
Consensus pattern (120 bp):
TTGGTCATTCACATACCAGCATAAATTTAATTATTATAAATTTAATTATAATTACACATAACAAT
TTTACAGCATAAGCTCAATTCCGACCCGATCTTGACGATTGTCCAACATGATAGC
Found at i:23970785 original size:23 final size:23
Alignment explanation
Indices: 23970740--23970786 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
23970730 TAAAAATAAT
*
23970740 AACTAACAATAATATAATGTAAA
1 AACTAACAATAATATAATCTAAA
*
23970763 AACTAACAATCATACTAA-CTAAA
1 AACTAACAATAATA-TAATCTAAA
23970786 A
1 A
23970787 TAATAATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.60, C:0.15, G:0.02, T:0.23
Consensus pattern (23 bp):
AACTAACAATAATATAATCTAAA
Found at i:23976358 original size:11 final size:11
Alignment explanation
Indices: 23976342--23976368 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
23976332 TATTAAATAC
23976342 AATAATAAAAT
1 AATAATAAAAT
23976353 AATAATAAAAT
1 AATAATAAAAT
23976364 AATAA
1 AATAA
23976369 AATATCTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:23979472 original size:16 final size:17
Alignment explanation
Indices: 23979441--23979474 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
23979431 CATTTATATA
23979441 TTTTTTAAAATATTTAT
1 TTTTTTAAAATATTTAT
*
23979458 TTTTTTAATAT-TTTAT
1 TTTTTTAAAATATTTAT
23979474 T
1 T
23979475 GAATTCTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAAAATATTTAT
Found at i:23983537 original size:36 final size:37
Alignment explanation
Indices: 23983492--23983567 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 37
23983482 TTAGCTACAC
23983492 TTATCACTTATCTGATCAAGTGAAAAAGTGATAAGTG
1 TTATCACTTATCTGATCAAGTGAAAAAGTGATAAGTG
*
23983529 TTAT-ACTTATCTGATCAAGTGACAAAGTGATAAGTG
1 TTATCACTTATCTGATCAAGTGAAAAAGTGATAAGTG
23983565 TTA
1 TTA
23983568 GTCTTAGCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 34 0.89
37 4 0.11
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (37 bp):
TTATCACTTATCTGATCAAGTGAAAAAGTGATAAGTG
Found at i:23983610 original size:89 final size:89
Alignment explanation
Indices: 23983449--23983653 Score: 217
Period size: 89 Copynumber: 2.3 Consensus size: 89
23983439 TTTGAGTACT
* **
23983449 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCACTTATCTGATCAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTAT-ACTGATCTGAGAAAGTG
* *
23983514 AAAAAGTGATAAG-T-GTTATACTTA
65 AAAAAGTGAT-AGCTAGCTACACTTA
*
23983538 TCTGATCAAGTGACAAAGTGATAAGTGTTAG-TCTTAGCTACACTTAT-CTGATCAAGTGAGAAA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCT-TTAGCTACACTTATACTGATC---TGAGAAA
* *
23983601 GTG-ATAAGTGGTAGCCTAGCTACACTTA
62 GTGAAAAAGTGATAG-CTAGCTACACTTA
*
23983629 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
23983654 ATCATACGTA
Statistics
Matches: 100, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
87 5 0.05
88 3 0.03
89 63 0.63
90 14 0.14
91 15 0.15
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (89 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATACTGATCTGAGAAAGTGA
AAAAGTGATAGCTAGCTACACTTA
Found at i:23990534 original size:21 final size:21
Alignment explanation
Indices: 23990508--23990551 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
23990498 TATAATTATG
23990508 TAATCAG-TTACCATCCATACC
1 TAATCAGATT-CCATCCATACC
23990529 TAATCAGATTCCATCCATACC
1 TAATCAGATTCCATCCATACC
23990550 TA
1 TA
23990552 TTATTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.34, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TAATCAGATTCCATCCATACC
Found at i:23994973 original size:6 final size:6
Alignment explanation
Indices: 23994962--23995012 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
23994952 AATATGTGTA
23994962 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
23995010 TAT
1 TAT
23995013 CTGGAGATGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (6 bp):
TATATG
Found at i:23995756 original size:27 final size:27
Alignment explanation
Indices: 23995704--23995756 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
23995694 TTAAAATACT
* * *
23995704 AAGTAATGTATTATATATTTATTTTAA
1 AAGTAATATATAATATATTTAATTTAA
23995731 AAGTAATATATAAT-TATTTAAATTTA
1 AAGTAATATATAATATATTT-AATTTA
23995757 TTTATTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (27 bp):
AAGTAATATATAATATATTTAATTTAA
Found at i:23997190 original size:88 final size:84
Alignment explanation
Indices: 23997034--23997307 Score: 316
Period size: 88 Copynumber: 3.1 Consensus size: 84
23997024 TTAAGGGTGT
* * *
23997034 AAAAA-GCCCTCAAACTTTTTCAAAAAAAGCAATTAAGTTCCTACCTTTTTTTGCACACAATTAG
1 AAAAATGCCCTCAAACTTTTTCAAAAAAAGCAATTAAG-CCCT--TTTTTTTTGCACTCAATT-G
*
23997098 GTACTTGAACTTTCAAGATGCATA
62 GTACTTGAACTTTCAA-ATGCATC
* * *
23997122 AAAAATGCCGTCAAACTTTTTCAAAAATAGTAATTAAGCCCCTTTTTATTTTGCACTCAATTGCG
1 AAAAATGCCCTCAAACTTTTTCAAAAAAAGCAATTAAG-CCCTTTTT-TTTTGCACTCAATTG-G
23997187 TACTTGAACTTTCAAAATGCATC
63 TACTTGAACTTTC-AAATGCATC
* * *
23997210 AAAAAGGCCCTCAAACTTTTTCAAAAAAAAAGCAATTAAGCTCTTTTTTTTGGCACTCAATTGGG
1 AAAAATGCCCTCAAACTTTTTC--AAAAAAAGCAATTAAGCCCTTTTTTTTTGCACTCAATT-GG
* **
23997275 TATTTGAACAGTCAAATGCATC
63 TACTTGAACTTTCAAATGCATC
23997297 AAAAATGCCCT
1 AAAAATGCCCT
23997308 TTGACCATTA
Statistics
Matches: 161, Mismatches: 18, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
87 23 0.14
88 82 0.51
89 42 0.26
90 14 0.09
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.32
Consensus pattern (84 bp):
AAAAATGCCCTCAAACTTTTTCAAAAAAAGCAATTAAGCCCTTTTTTTTTGCACTCAATTGGTAC
TTGAACTTTCAAATGCATC
Found at i:23997419 original size:10 final size:10
Alignment explanation
Indices: 23997404--23997537 Score: 64
Period size: 10 Copynumber: 13.4 Consensus size: 10
23997394 ACATGTGGCA
23997404 AAAAAATTAT
1 AAAAAATTAT
23997414 AAAAAA-T-T
1 AAAAAATTAT
**
23997422 -AAATTTTAAT
1 AAAAAATT-AT
*
23997432 AGAAAA-TAT
1 AAAAAATTAT
*
23997441 ATAAAATTTAT
1 A-AAAAATTAT
* *
23997452 TAAAAATTAGA
1 AAAAAATTA-T
23997463 AAATAAATT-T
1 AAA-AAATTAT
*
23997473 ATAAAAATCAT
1 A-AAAAATTAT
23997484 AAAAAATTAT
1 AAAAAATTAT
* *
23997494 AAAAAAATGT
1 AAAAAATTAT
**
23997504 AAAATTTTAT
1 AAAAAATTAT
*
23997514 -AAAAATCATT
1 AAAAAATTA-T
23997524 AAAAAATTAT
1 AAAAAATTAT
23997534 AAAA
1 AAAA
23997538 TGCATAAAAA
Statistics
Matches: 88, Mismatches: 24, Indels: 24
0.65 0.18 0.18
Matches are distributed among these distances:
7 3 0.03
8 2 0.02
9 9 0.10
10 51 0.58
11 18 0.20
12 5 0.06
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.32
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:23997450 original size:21 final size:19
Alignment explanation
Indices: 23997412--23997519 Score: 51
Period size: 21 Copynumber: 5.4 Consensus size: 19
23997402 CAAAAAAATT
* *
23997412 ATAAAAAAT-TAAATTTTA
1 ATAAAAATTATAAAATTTA
23997430 ATAGAAAATATATAAAATTTA
1 ATA-AAAAT-TATAAAATTTA
* * *
23997451 TTAAAAATTAGAAAATAAATTT
1 ATAAAAATTATAAAAT---TTA
*
23997473 ATAAAAATCATAAAAAATTATA
1 ATAAAAAT--TATAAAATT-TA
* *
23997495 A-AAAAA-TGTAAAATTTT
1 ATAAAAATTATAAAATTTA
23997512 ATAAAAAT
1 ATAAAAAT
23997520 CATTAAAAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 21
0.68 0.11 0.21
Matches are distributed among these distances:
17 2 0.03
18 15 0.22
19 11 0.16
20 6 0.09
21 16 0.24
22 11 0.16
24 7 0.10
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (19 bp):
ATAAAAATTATAAAATTTA
Found at i:23997489 original size:32 final size:33
Alignment explanation
Indices: 23997434--23997538 Score: 86
Period size: 32 Copynumber: 3.0 Consensus size: 33
23997424 ATTTTAATAG
* * * * *
23997434 AAAATATATAAAATTTATTAAAAATTAGAAAAT
1 AAAATTTATAAAAATCATAAAAAATTAAAAAAT
23997467 -AAATTTATAAAAATCATAAAAAATTATAAAAAAATGT
1 AAAATTTATAAAAATCATAAAAAA-T-T-AAAAAA--T
*
23997504 AAAATTTTATAAAAATCATTAAAAAATTATAAAAT
1 AAAA-TTTATAAAAATCA-TAAAAAATTAAAAAAT
23997539 GCATAAAAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
32 19 0.33
33 1 0.02
34 1 0.02
35 6 0.10
37 6 0.10
38 4 0.07
39 14 0.24
40 7 0.12
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (33 bp):
AAAATTTATAAAAATCATAAAAAATTAAAAAAT
Found at i:23997498 original size:20 final size:20
Alignment explanation
Indices: 23997471--23997537 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 20
23997461 GAAAATAAAT
23997471 TTAT-AAAAATCATAAAAAA
1 TTATAAAAAATCATAAAAAA
**
23997490 TTATAAAAAA--ATGTAAAA
1 TTATAAAAAATCATAAAAAA
*
23997508 TTTTATAAAAATCATTAAAAAA
1 TTATA-AAAAATCA-TAAAAAA
23997530 TTATAAAA
1 TTATAAAA
23997538 TGCATAAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
18 10 0.27
19 9 0.24
20 5 0.14
21 4 0.11
22 9 0.24
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.31
Consensus pattern (20 bp):
TTATAAAAAATCATAAAAAA
Found at i:23997522 original size:39 final size:39
Alignment explanation
Indices: 23997404--23997537 Score: 134
Period size: 42 Copynumber: 3.4 Consensus size: 39
23997394 ACATGTGGCA
23997404 AAAAAATTAT-AAAAAAT-T-AAATTTTAATAGAAAAT-AT
1 AAAAAATTATAAAAAAATGTAAAATTTT-ATA-AAAATCAT
* * *
23997441 ATAAAATTTATTAAAAATTAG-AAAATAAATTTATAAAAATCAT
1 A-AAAAATTATAAAAAAAT-GTAAAAT---TTTATAAAAATCAT
23997484 AAAAAATTATAAAAAAATGTAAAATTTTATAAAAATCATT
1 AAAAAATTATAAAAAAATGTAAAATTTTATAAAAATCA-T
23997524 AAAAAATTATAAAA
1 AAAAAATTATAAAA
23997538 TGCATAAAAA
Statistics
Matches: 81, Mismatches: 5, Indels: 19
0.77 0.05 0.18
Matches are distributed among these distances:
37 1 0.01
38 8 0.10
39 19 0.23
40 15 0.19
41 5 0.06
42 24 0.30
43 6 0.07
44 3 0.04
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.32
Consensus pattern (39 bp):
AAAAAATTATAAAAAAATGTAAAATTTTATAAAAATCAT
Found at i:23997547 original size:20 final size:20
Alignment explanation
Indices: 23997434--23997547 Score: 74
Period size: 20 Copynumber: 5.7 Consensus size: 20
23997424 ATTTTAATAG
* *
23997434 AAAAT-ATATAAAATTTATTA
1 AAAATCATAAAAAAATTA-TA
* *
23997454 AAAATTAGAAAATAAATTTATA
1 AAAATCATAAAA-AAA-TTATA
23997476 AAAATCAT-AAAAAATTATA
1 AAAATCATAAAAAAATTATA
* * **
23997495 AAAA-AATGTAAAATTTTATA
1 AAAATCAT-AAAAAAATTATA
*
23997515 AAAATCATTAAAAAATTAT-
1 AAAATCATAAAAAAATTATA
23997534 AAAATGCATAAAAA
1 AAAAT-CATAAAAA
23997548 GGACCTTTAA
Statistics
Matches: 75, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
18 2 0.03
19 14 0.19
20 37 0.49
21 9 0.12
22 10 0.13
23 3 0.04
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (20 bp):
AAAATCATAAAAAAATTATA
Found at i:23997818 original size:27 final size:25
Alignment explanation
Indices: 23997787--23997863 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 25
23997777 GACTTTATAA
23997787 AATTTATAATTTTTTTATATTTCTAT
1 AATTTATAATTTTTTTATATTT-TAT
23997813 ATATTTATAATTTTTTTATGATTTTAT
1 A-ATTTATAATTTTTTTAT-ATTTTAT
* *
23997840 AATTTTTAATATTTTTATAGTTTT
1 AATTTATAATTTTTTTATA-TTTT
23997864 TTATTAAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
25 1 0.02
26 20 0.43
27 21 0.46
28 4 0.09
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (25 bp):
AATTTATAATTTTTTTATATTTTAT
Found at i:23997845 original size:18 final size:18
Alignment explanation
Indices: 23997798--23997867 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
23997788 ATTTATAATT
*
23997798 TTTTTAT-A-TTTCTATA
1 TTTTTATAATTTTTTATA
*
23997814 TATTTATAATTTTTT-TA
1 TTTTTATAATTTTTTATA
*
23997831 TGATTTTATAATTTTTAATA
1 T--TTTTATAATTTTTTATA
*
23997851 TTTTTATAGTTTTTTAT
1 TTTTTATAATTTTTTAT
23997868 TAAAATTCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
16 6 0.14
17 4 0.09
18 18 0.42
19 12 0.28
20 3 0.07
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTTATAATTTTTTATA
Found at i:23997864 original size:19 final size:18
Alignment explanation
Indices: 23997742--23997866 Score: 60
Period size: 18 Copynumber: 6.9 Consensus size: 18
23997732 CTTTTCTATG
* *
23997742 ATTTTTATATCTCTTTACT
1 ATTTTTATAT-TTTTTAAT
**
23997761 -TTTTTATATTTTTTACG
1 ATTTTTATATTTTTTAAT
* * * *
23997778 ACTTTATAAAATTTATAAT
1 A-TTTTTATATTTTTTAAT
* *
23997797 TTTTTTATA-TTTCT-AT
1 ATTTTTATATTTTTTAAT
* *
23997813 ATATTTATAATTTTTTTAT
1 ATTTTTAT-ATTTTTTAAT
*
23997832 GA-TTTTATAATTTTTAAT
1 -ATTTTTATATTTTTTAAT
23997850 ATTTTTATAGTTTTTTA
1 ATTTTTATA-TTTTTTA
23997867 TTAAAATTCA
Statistics
Matches: 79, Mismatches: 19, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
16 8 0.10
17 12 0.15
18 34 0.43
19 24 0.30
20 1 0.01
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (18 bp):
ATTTTTATATTTTTTAAT
Found at i:23998179 original size:36 final size:38
Alignment explanation
Indices: 23998125--23998195 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 38
23998115 CTGAATATAA
*
23998125 TAAATATATATTTTTTA-TTTTTAATTTTAAAATACTT
1 TAAAAATATATTTTTTATTTTTTAATTTTAAAATACTT
*
23998162 TAAAAATAT-TTTTTTATTTTTTATTTTTAAAATA
1 TAAAAATATATTTTTTATTTTTTAATTTTAAAATA
23998196 TTTTTTGTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 7 0.23
37 24 0.77
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (38 bp):
TAAAAATATATTTTTTATTTTTTAATTTTAAAATACTT
Found at i:23999604 original size:21 final size:21
Alignment explanation
Indices: 23999580--23999621 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
23999570 AAAAAAATTA
*
23999580 ATTAGTTTTATTATCATTATT
1 ATTACTTTTATTATCATTATT
* *
23999601 ATTACTTTTATTTTTATTATT
1 ATTACTTTTATTATCATTATT
23999622 TGCCTTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTACTTTTATTATCATTATT
Found at i:24012924 original size:256 final size:257
Alignment explanation
Indices: 24012464--24013120 Score: 1066
Period size: 256 Copynumber: 2.6 Consensus size: 257
24012454 GAATCTCAAA
*
24012464 TCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* *
24012529 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAAGTGACAGTAGAGTGGATCGTGTCAGGT
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATCAGGT
24012594 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
131 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
*
24012659 TAGAGCGGATTAAAATAAAAGATCTTA-TCTCTGAAGTGACAGTAAAGTGGATCGTATCAGG
196 TAGAGCGGATTAAAATAAAAGATCTTACTCTCTGAAGTGACAGTAAAGTAGATCGTATCAGG
* * *
24012720 TTTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
*
24012785 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATTAGGT
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATCAGGT
* * *
24012850 CTTATCTTCTTGAGATTACAGCGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAGATTACAG
131 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
* * *
24012915 T-GTAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGG
196 TAG-AGCGGATTAAAATAAAAGATCTTA-CTCTCTGAAGTGACAGTAAAGTAGATCGTATCAGG
* *
24012978 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATTCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* ** * * * * *
24013043 GTGGAGCGAATTAAAATAAAAAATCTTATCTCTCTGAAGTTATAGTGGAGTAGATCGTATCAAGT
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATCAGGT
24013108 CTTATCTCCCTGA
131 CTTATCTCCCTGA
24013121 CGTTGCAGTG
Statistics
Matches: 368, Mismatches: 30, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
255 1 0.00
256 209 0.57
258 158 0.43
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (257 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATCAGGT
CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
TAGAGCGGATTAAAATAAAAGATCTTACTCTCTGAAGTGACAGTAAAGTAGATCGTATCAGG
Found at i:24013137 original size:129 final size:129
Alignment explanation
Indices: 24012464--24013120 Score: 1057
Period size: 129 Copynumber: 5.1 Consensus size: 129
24012454 GAATCTCAAA
*
24012464 TCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* * *
24012529 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAAGTGACAGTAGAGTGGATCGTGTCAGG
66 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATCAGG
24012593 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* *
24012658 GTAGAGCGGATTAAAATAAAAGATCTTA--TCTCTGAAGTGACAGTAAAGTGGATCGTATCAGG
66 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATCAGG
* * *
24012720 TTTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* *
24012785 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATTAGG
66 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATCAGG
* * *
24012849 TCTTATCTTCTTGAGATTACAGCGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* * * *
24012914 GTGTAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGG
66 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATCAGG
* *
24012978 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATTCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* * * * * * *
24013043 GTGGAGCGAATTAAAATAAAAAATCTTATCTCTCTGAAGTTATAGTGGAGTAGATCGTATCAAG
66 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATCAGG
24013107 TCTTATCTCCCTGA
1 TCTTATCTCCCTGA
24013121 CGTTGCAGTG
Statistics
Matches: 490, Mismatches: 36, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
127 119 0.24
129 371 0.76
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (129 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATCAGG
Found at i:24014781 original size:28 final size:27
Alignment explanation
Indices: 24014743--24014864 Score: 69
Period size: 26 Copynumber: 4.4 Consensus size: 27
24014733 TTATATACAT
*
24014743 TATATC-TTATA-CCTTATATTATTTA
1 TATATCTTTATATACTTATATTATTTA
*
24014768 TATATCTTTATATACGCATTTTAATTTCCATATCTA
1 TATATCTTTATATA--C-TTAT-A-TT--AT-T-TA
24014804 TATA-CTTTATAT-CTTAT-TTATTTA
1 TATATCTTTATATACTTATATTATTTA
* * *
24014828 TATATCCTTGTATACATATATT-TTTA
1 TATATCTTTATATACTTATATTATTTA
24014854 TATAT-TTTATA
1 TATATCTTTATA
24014865 ATGCATACAT
Statistics
Matches: 75, Mismatches: 8, Indels: 28
0.68 0.07 0.25
Matches are distributed among these distances:
24 6 0.08
25 17 0.23
26 20 0.27
27 2 0.03
28 2 0.03
29 1 0.01
30 3 0.04
31 4 0.05
32 3 0.04
34 2 0.03
35 9 0.12
36 6 0.08
ACGTcount: A:0.31, C:0.11, G:0.02, T:0.56
Consensus pattern (27 bp):
TATATCTTTATATACTTATATTATTTA
Found at i:24017455 original size:29 final size:30
Alignment explanation
Indices: 24017391--24017458 Score: 93
Period size: 31 Copynumber: 2.3 Consensus size: 30
24017381 AATATTAAAA
24017391 TTATACATGAATTTTGATTCAATGTGTAATG
1 TTATACATGAATTTTGATT-AATGTGTAATG
* * *
24017422 TTATACATGAATTTTGATT-TTGTGTGATT
1 TTATACATGAATTTTGATTAATGTGTAATG
24017451 TTATACAT
1 TTATACAT
24017459 AAAAATTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 15 0.44
31 19 0.56
ACGTcount: A:0.29, C:0.06, G:0.15, T:0.50
Consensus pattern (30 bp):
TTATACATGAATTTTGATTAATGTGTAATG
Found at i:24019260 original size:20 final size:21
Alignment explanation
Indices: 24019235--24019278 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
24019225 AGGCCTGGCT
*
24019235 CGGG-AAAAAATTCATAGGCC
1 CGGGAAAAAAATTCATAAGCC
*
24019255 CGGGAAAAAAATTTATAAGCC
1 CGGGAAAAAAATTCATAAGCC
24019276 CGG
1 CGG
24019279 CCCGGCCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.41, C:0.18, G:0.25, T:0.16
Consensus pattern (21 bp):
CGGGAAAAAAATTCATAAGCC
Found at i:24019363 original size:10 final size:10
Alignment explanation
Indices: 24019348--24019441 Score: 51
Period size: 8 Copynumber: 9.8 Consensus size: 10
24019338 AAAAATTTAT
24019348 TTTAAAAATA
1 TTTAAAAATA
24019358 TTT-AAAA-A
1 TTTAAAAATA
24019366 -TTAAAAA-A
1 TTTAAAAATA
*
24019374 -TTAAAAGTA
1 TTTAAAAATA
*
24019383 TTTTTAAAATA
1 -TTTAAAAATA
**
24019394 TTTTTAAA-A
1 TTTAAAAATA
*
24019403 -TTAAAAAAA
1 TTTAAAAATA
24019412 TTTAAAAAAAGTA
1 TTT--AAAAA-TA
24019425 TTTAAAAAT-
1 TTTAAAAATA
24019434 TTTAAAAA
1 TTTAAAAA
24019442 ATAAAATAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 19
0.72 0.07 0.20
Matches are distributed among these distances:
7 2 0.03
8 17 0.25
9 15 0.22
10 13 0.19
11 12 0.18
12 5 0.07
13 4 0.06
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (10 bp):
TTTAAAAATA
Found at i:24019397 original size:11 final size:11
Alignment explanation
Indices: 24019374--24019403 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
24019364 AATTAAAAAA
24019374 TTAAAAGTATTT
1 TTAAAA-TATTT
24019386 TTAAAATATTT
1 TTAAAATATTT
24019397 TTAAAAT
1 TTAAAAT
24019404 TAAAAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.67
12 6 0.33
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (11 bp):
TTAAAATATTT
Found at i:24019435 original size:8 final size:9
Alignment explanation
Indices: 24019346--24019441 Score: 54
Period size: 10 Copynumber: 10.1 Consensus size: 9
24019336 AAAAAAATTT
24019346 ATTTTAAAA
1 ATTTTAAAA
24019355 ATATTTAAAA
1 AT-TTTAAAA
24019365 A--TTAAAA
1 ATTTTAAAA
*
24019372 A-ATTAAAA
1 ATTTTAAAA
24019380 GTATTTTTAAAA
1 --A-TTTTAAAA
*
24019392 TATTTTTAAA
1 -ATTTTAAAA
**
24019402 ATTAAAAAA
1 ATTTTAAAA
*
24019411 ATTTAAAAAA
1 ATTT-TAAAA
24019421 AGTATTTAAAA
1 A-T-TTTAAAA
24019432 ATTTTAAAA
1 ATTTTAAAA
24019441 A
1 A
24019442 ATAAAATAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
7 7 0.10
8 6 0.08
9 19 0.27
10 23 0.32
11 8 0.11
12 8 0.11
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:24019459 original size:39 final size:40
Alignment explanation
Indices: 24019313--24019460 Score: 128
Period size: 40 Copynumber: 3.7 Consensus size: 40
24019303 CCAAAAATTT
* *
24019313 ATTTTAAAAATTAAAACAAAAATAAAAAAATTTATTTTAAAA
1 ATTTTAAAAAATAAAA-AAAAATAAAAAAA-GTATTTTAAAA
* *
24019355 ATATTT-AAAAAT--TAAAAAAT--TAAAAGTATTTTTAAAA
1 AT-TTTAAAAAATAAAAAAAAATAAAAAAAGTA-TTTTAAAA
* * **
24019392 TATTTTTAAAATTAAAAAAATTTAAAAAAAGTA-TTTAAAA
1 -ATTTTAAAAAATAAAAAAAAATAAAAAAAGTATTTTAAAA
24019432 ATTTTAAAAAATAAAATAAAAATAAAAAA
1 ATTTTAAAAAATAAAA-AAAAATAAAAAA
24019461 TTATTGTATT
Statistics
Matches: 84, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
36 2 0.02
37 15 0.18
38 7 0.08
39 20 0.24
40 23 0.27
42 14 0.17
43 3 0.04
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (40 bp):
ATTTTAAAAAATAAAAAAAAATAAAAAAAGTATTTTAAAA
Found at i:24042446 original size:24 final size:24
Alignment explanation
Indices: 24042375--24042446 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
24042365 TCGTTCTGTG
* *
24042375 GCAAAGAATGAATTGACAGTAAAT
1 GCAAAGGATGAATTGACGGTAAAT
*
24042399 GCAAAGGATGAATTGACGATAAAT
1 GCAAAGGATGAATTGACGGTAAAT
* *
24042423 GCAAAGGATGAATTAACGGCAAAT
1 GCAAAGGATGAATTGACGGTAAAT
24042447 TACCCAAGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.47, C:0.10, G:0.24, T:0.19
Consensus pattern (24 bp):
GCAAAGGATGAATTGACGGTAAAT
Found at i:24042548 original size:21 final size:21
Alignment explanation
Indices: 24042523--24042586 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
24042513 TGAGCTTCTA
24042523 TTAACTCATATGAGTTTCCGT
1 TTAACTCATATGAGTTTCCGT
* *
24042544 TTAAC-CCTAATGGGTTTCCGT
1 TTAACTCAT-ATGAGTTTCCGT
* * *
24042565 TTAGCTCTTATGAGCTTCCGT
1 TTAACTCATATGAGTTTCCGT
24042586 T
1 T
24042587 CAACCTTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 2 0.06
21 31 0.89
22 2 0.06
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (21 bp):
TTAACTCATATGAGTTTCCGT
Found at i:24042578 original size:42 final size:42
Alignment explanation
Indices: 24042531--24042624 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
24042521 TATTAACTCA
* * ** *
24042531 TATGAGTTTCCGTTTAACCCTAATGGGTTTCCGTTTAGCTCT
1 TATGAGCTTCCGTTCAACCCTAATAAGTTTCCGTTTAGCACT
* * *
24042573 TATGAGCTTCCGTTCAACCTTTATAAGTTTCTGTTTAGCACT
1 TATGAGCTTCCGTTCAACCCTAATAAGTTTCCGTTTAGCACT
*
24042615 TATGTGCTTC
1 TATGAGCTTC
24042625 TGTTTAGCCT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.18, C:0.21, G:0.17, T:0.44
Consensus pattern (42 bp):
TATGAGCTTCCGTTCAACCCTAATAAGTTTCCGTTTAGCACT
Found at i:24042644 original size:19 final size:21
Alignment explanation
Indices: 24042601--24042645 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
24042591 CTTTATAAGT
* *
24042601 TTCTGTTTAGCACTTATGTGC
1 TTCTGTTTAGCACTTACGGGC
24042622 TTCTGTTTAGC-CTT-CGGGC
1 TTCTGTTTAGCACTTACGGGC
24042641 TTCTG
1 TTCTG
24042646 AAAACGATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.36
20 3 0.14
21 11 0.50
ACGTcount: A:0.09, C:0.22, G:0.22, T:0.47
Consensus pattern (21 bp):
TTCTGTTTAGCACTTACGGGC
Found at i:24049174 original size:17 final size:18
Alignment explanation
Indices: 24049147--24049180 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
24049137 AAGCTATTAG
24049147 AAAATTAAAATAAAAAAT
1 AAAATTAAAATAAAAAAT
24049165 AAAA-TAAAATAAAAAA
1 AAAATTAAAATAAAAAA
24049181 GCTACCGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAATTAAAATAAAAAAT
Found at i:24062925 original size:88 final size:89
Alignment explanation
Indices: 24062791--24062962 Score: 226
Period size: 88 Copynumber: 1.9 Consensus size: 89
24062781 AGAAAATATT
* ** *
24062791 TTTTTTACACTCAATTTAGGTACTTAAGTTTTTAAAATATATCAAAAAGACCCTCAAA-TCTTTT
1 TTTTTTACACTCAATTGAGGTACTTAAACTTTCAAAATATATCAAAAAGACCCTCAAACT-TTTT
24062855 CA-AAAAAAGCAATCAAGCCCCTTAC
65 CATAAAAAA-CAATCAAGCCCCTTAC
* *
24062880 TTTTTTGCACTCAATTGA-GTACTTAAACTTTCAAAA-AGTATCAAAAAGATCCTCAAACTTTTT
1 TTTTTTACACTCAATTGAGGTACTTAAACTTTCAAAATA-TATCAAAAAGACCCTCAAACTTTTT
*
24062943 CATAAAAAACAATTAAGCCC
65 CATAAAAAACAATCAAGCCC
24062963 ATGCATTTAT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
87 1 0.01
88 49 0.67
89 23 0.32
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (89 bp):
TTTTTTACACTCAATTGAGGTACTTAAACTTTCAAAATATATCAAAAAGACCCTCAAACTTTTTC
ATAAAAAACAATCAAGCCCCTTAC
Found at i:24063004 original size:18 final size:18
Alignment explanation
Indices: 24062971--24063026 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 18
24062961 CCATGCATTT
24062971 ATTAAAAAATAT-TAAAA
1 ATTAAAAAATATATAAAA
24062988 ATTAAAAAATATATAAAA
1 ATTAAAAAATATATAAAA
* *
24063006 ATCGTAATAATTATATAAAA
1 AT--TAAAAAATATATAAAA
24063026 A
1 A
24063027 ATTGTACATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
17 12 0.35
18 7 0.21
20 15 0.44
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (18 bp):
ATTAAAAAATATATAAAA
Found at i:24063114 original size:21 final size:21
Alignment explanation
Indices: 24063090--24063134 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
24063080 AAAAAATTAT
* *
24063090 AAAATTTTATAAAATCGT-AAG
1 AAAATTATACAAAAT-GTAAAG
24063111 AAAATTATACAAAATGTAAAG
1 AAAATTATACAAAATGTAAAG
24063132 AAA
1 AAA
24063135 TATAAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.60, C:0.04, G:0.09, T:0.27
Consensus pattern (21 bp):
AAAATTATACAAAATGTAAAG
Found at i:24063373 original size:18 final size:18
Alignment explanation
Indices: 24063352--24063409 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
24063342 AAATTTATTT
24063352 TTTATATTTTTATTAAAA
1 TTTATATTTTTATTAAAA
*
24063370 TTTAATAATTTTT-CTAAAA
1 TTT-AT-ATTTTTATTAAAA
*
24063389 TTTAT-TATTTATTATAAA
1 TTTATATTTTTATTA-AAA
24063407 TTT
1 TTT
24063410 TTTCTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
16 4 0.12
17 2 0.06
18 11 0.33
19 10 0.30
20 6 0.18
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTATATTTTTATTAAAA
Found at i:24063388 original size:44 final size:46
Alignment explanation
Indices: 24063302--24063400 Score: 132
Period size: 44 Copynumber: 2.2 Consensus size: 46
24063292 GGGTCGTTAA
*
24063302 ATTTTTTATGATTTTTATAAAAAATTTCTAATTTTTAATAAAATTT
1 ATTTTTTATGATTTTTATAAAAAATTTATAATTTTTAATAAAATTT
* *
24063348 ATTTTTTAT-ATTTTTAT-TAAAATTTAATAATTTTT-CTAAAATTT
1 ATTTTTTATGATTTTTATAAAAAATTT-ATAATTTTTAATAAAATTT
*
24063392 ATTATTTAT
1 ATTTTTTAT
24063401 TATAAATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
44 23 0.48
45 16 0.33
46 9 0.19
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (46 bp):
ATTTTTTATGATTTTTATAAAAAATTTATAATTTTTAATAAAATTT
Found at i:24063406 original size:19 final size:18
Alignment explanation
Indices: 24063352--24063406 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
24063342 AAATTTATTT
24063352 TTTA-TATTTTTATTAAAA
1 TTTATTATTTTTA-TAAAA
* *
24063370 TTTAATAATTTTTCTAAAA
1 TTT-ATTATTTTTATAAAA
24063389 TTTATTATTTATTATAAA
1 TTTATTATTT-TTATAAA
24063407 TTTTTTCTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
18 9 0.30
19 15 0.50
20 6 0.20
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTATTATTTTTATAAAA
Found at i:24063938 original size:119 final size:122
Alignment explanation
Indices: 24063792--24064039 Score: 348
Period size: 125 Copynumber: 2.0 Consensus size: 122
24063782 AGAATTTGTG
* *
24063792 TTTTTTTTTGTCTAAGTTAGACTTTAAAAT-TGACAATTG-T-T-C-TCAGGGTTTATAAT-T-T
1 TTTTTTTTTGTCTAAGTTAGACGTT-AAATGTGACAATTGTTGTACATCACGGTTTATAATCTCT
*
24063850 TTTTTTGTCTAAATTAGGCCCTAGGCTTGACAATTATTCTAACATTGGGGCTTGTACTT
65 TTTTTTGTCTAAATTA-GCCCTAGGCTTGACAATTATCCTAACATTGGGGCTTGTACTT
* *
24063909 TTTTTGTTGTTGTCTAAGTTAGACGTTAAATGTGACAATTGTTGTCACATTACGGTTTATACTCT
1 TTTTT-TT-TTGTCTAAGTTAGACGTTAAATGTGACAATTGTTGT-ACATCACGGTTTATAATCT
*
24063974 CTTTTTTTGTCTAAATTAGCCTTAGGCTTGACAATTATCCTAACATTGGGGCTTGTACTT
63 CTTTTTTTGTCTAAATTAGCCCTAGGCTTGACAATTATCCTAACATTGGGGCTTGTACTT
24064034 TTTTTT
1 TTTTTT
24064040 GTCAAAGTTA
Statistics
Matches: 115, Mismatches: 6, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
117 5 0.04
118 6 0.05
119 26 0.23
120 1 0.01
121 1 0.01
123 1 0.01
124 12 0.10
125 46 0.40
126 17 0.15
ACGTcount: A:0.23, C:0.14, G:0.17, T:0.47
Consensus pattern (122 bp):
TTTTTTTTTGTCTAAGTTAGACGTTAAATGTGACAATTGTTGTACATCACGGTTTATAATCTCTT
TTTTTGTCTAAATTAGCCCTAGGCTTGACAATTATCCTAACATTGGGGCTTGTACTT
Found at i:24063945 original size:64 final size:61
Alignment explanation
Indices: 24063847--24064039 Score: 181
Period size: 64 Copynumber: 3.1 Consensus size: 61
24063837 GGGTTTATAA
* **
24063847 TTTTTTTTTGTCTAAATTAGGCCCTAGGCTTGACAATTATTCTAACATTGGGGCTTGTACTT
1 TTTTTTTTTGTCTAAATTA-GCCTTAGAATTGACAATTATTCTAACATTGGGGCTTGTACTT
* * * * * ** * * *
24063909 TTTTTGTTGTTGTCTAAGTTAGACGTTA-AATGTGACAATTGTTGTCACATTACGGTTTATACTC
1 TTTTT-TT-TTGTCTAAATTAG-CCTTAGAAT-TGACAATTATTCTAACATTGGGGCTTGTACTT
* ** *
24063973 TCTTTTTTTGTCTAAATTAGCCTTAGGCTTGACAATTATCCTAACATTGGGGCTTGTACTT
1 TTTTTTTTTGTCTAAATTAGCCTTAGAATTGACAATTATTCTAACATTGGGGCTTGTACTT
24064034 TTTTTT
1 TTTTTT
24064040 GTCAAAGTTA
Statistics
Matches: 98, Mismatches: 28, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
61 32 0.33
62 18 0.18
63 6 0.06
64 42 0.43
ACGTcount: A:0.21, C:0.15, G:0.17, T:0.47
Consensus pattern (61 bp):
TTTTTTTTTGTCTAAATTAGCCTTAGAATTGACAATTATTCTAACATTGGGGCTTGTACTT
Found at i:24067168 original size:93 final size:93
Alignment explanation
Indices: 24066969--24067157 Score: 369
Period size: 93 Copynumber: 2.0 Consensus size: 93
24066959 CTTATTTGAA
*
24066969 TATTAAAAATTTTAATTATAAATAAATTAAACGGTCACATTTTTATAAATACTAATATTTTAACA
1 TATTAAAAAATTTAATTATAAATAAATTAAACGGTCACATTTTTATAAATACTAATATTTTAACA
24067034 AATTGATTATTGAATTAAATAAGATAAT
66 AATTGATTATTGAATTAAATAAGATAAT
24067062 TATTAAAAAATTTAATTATAAATAAATTAAACGGTCACATTTTTATAAATACTAATATTTTAACA
1 TATTAAAAAATTTAATTATAAATAAATTAAACGGTCACATTTTTATAAATACTAATATTTTAACA
24067127 AATTGATTATTGAATTAAATAAGATAAT
66 AATTGATTATTGAATTAAATAAGATAAT
24067155 TAT
1 TAT
24067158 ATTCATATTT
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 95 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (93 bp):
TATTAAAAAATTTAATTATAAATAAATTAAACGGTCACATTTTTATAAATACTAATATTTTAACA
AATTGATTATTGAATTAAATAAGATAAT
Found at i:24067654 original size:22 final size:22
Alignment explanation
Indices: 24067629--24067671 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
24067619 TATCCAAATA
24067629 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
24067651 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
24067672 AATAGTGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:24067684 original size:11 final size:11
Alignment explanation
Indices: 24067636--24067677 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
24067626 ATAATAACAA
24067636 CAAAATAGTAG
1 CAAAATAGTAG
* *
24067647 CAACATAATAG
1 CAAAATAGTAG
*
24067658 TAAAATAGTAG
1 CAAAATAGTAG
24067669 CAAAATAGT
1 CAAAATAGT
24067678 GAGAAAACAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.55, C:0.10, G:0.14, T:0.21
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:24069604 original size:8 final size:8
Alignment explanation
Indices: 24069591--24069615 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
24069581 ATGTCAAATC
24069591 TTTGTCTT
1 TTTGTCTT
24069599 TTTGTCTT
1 TTTGTCTT
24069607 TTTGTCTT
1 TTTGTCTT
24069615 T
1 T
24069616 ATCATGTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.12, T:0.76
Consensus pattern (8 bp):
TTTGTCTT
Found at i:24091835 original size:4 final size:4
Alignment explanation
Indices: 24091826--24091853 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
24091816 GAGCGCTTAT
24091826 TTAA TTAA TTAA TTAA TTAA TTAA TTAA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA
24091854 AATTTTGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TTAA
Found at i:24093913 original size:23 final size:24
Alignment explanation
Indices: 24093887--24093933 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
24093877 GACTAATTCG
* *
24093887 ATTTTTTAAAT-ATATATTTAAAA
1 ATTTTATAAATAATAAATTTAAAA
*
24093910 ATTTTATCAATAATAAATTTAAAA
1 ATTTTATAAATAATAAATTTAAAA
24093934 TAATAACAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
ATTTTATAAATAATAAATTTAAAA
Found at i:24100465 original size:17 final size:16
Alignment explanation
Indices: 24100443--24100476 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24100433 ATTATATAAT
24100443 TAATGATAATTAAATTA
1 TAATGAT-ATTAAATTA
*
24100460 TAATGATATTATATTA
1 TAATGATATTAAATTA
24100476 T
1 T
24100477 TAAATAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (16 bp):
TAATGATATTAAATTA
Found at i:24103135 original size:7 final size:7
Alignment explanation
Indices: 24103123--24103147 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
24103113 TTAAAATAAA
24103123 TAAATTT
1 TAAATTT
24103130 TAAATTT
1 TAAATTT
24103137 TAAATTT
1 TAAATTT
24103144 TAAA
1 TAAA
24103148 CATTAAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
TAAATTT
Found at i:24113683 original size:18 final size:18
Alignment explanation
Indices: 24113660--24113752 Score: 134
Period size: 18 Copynumber: 5.2 Consensus size: 18
24113650 CCCAACTACT
*
24113660 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
24113678 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
24113696 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
24113714 GTATACGTGAATAGTGA-T
1 GTATACGTGAATAGT-ACC
24113732 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
24113750 GTA
1 GTA
24113753 AACGGTCGTA
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
17 1 0.01
18 66 0.97
19 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:24113712 original size:36 final size:36
Alignment explanation
Indices: 24113660--24113752 Score: 150
Period size: 36 Copynumber: 2.6 Consensus size: 36
24113650 CCCAACTACT
* *
24113660 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGAC
* *
24113696 GTATACGTGAATAGTACTGTATACGTGAATAGTGAT
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGAC
24113732 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
24113753 AACGGTCGTA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGAC
Found at i:24114609 original size:3 final size:3
Alignment explanation
Indices: 24114601--24114633 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
24114591 GTTTGACATC
*
24114601 TCT TCT TCT TCT TAT TC- TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
24114634 TTACTGTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:24118893 original size:19 final size:20
Alignment explanation
Indices: 24118871--24118908 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
24118861 CATTAAAAAT
24118871 AAAATTAAT-ATTTTATTAA
1 AAAATTAATCATTTTATTAA
*
24118890 AAAATTCATCATTTTATTA
1 AAAATTAATCATTTTATTA
24118909 TTAAAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
AAAATTAATCATTTTATTAA
Found at i:24119354 original size:22 final size:22
Alignment explanation
Indices: 24119329--24119372 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
24119319 TAGTAACTCA
24119329 TGATAAATTA-ATTAATTTAATT
1 TGATAAATTATATTAA-TTAATT
*
24119351 TGATAACTTATATTAATTAATT
1 TGATAAATTATATTAATTAATT
24119373 AAACTTGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (22 bp):
TGATAAATTATATTAATTAATT
Found at i:24119358 original size:32 final size:31
Alignment explanation
Indices: 24119298--24119374 Score: 84
Period size: 32 Copynumber: 2.5 Consensus size: 31
24119288 ATCGTAAACT
* *
24119298 TATAAATTGATTACTTGAATTTAGTAACTCA
1 TATAAATTAATTAATTGAATTTAGTAACTCA
* *
24119329 TGATAAATTAATTAATTTAATTT-GATAACTTA
1 T-ATAAATTAATTAATTGAATTTAG-TAACTCA
*
24119361 TATTAATTAATTAA
1 TATAAATTAATTAA
24119375 ACTTGTTAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
31 14 0.36
32 25 0.64
ACGTcount: A:0.43, C:0.05, G:0.06, T:0.45
Consensus pattern (31 bp):
TATAAATTAATTAATTGAATTTAGTAACTCA
Found at i:24128660 original size:18 final size:19
Alignment explanation
Indices: 24128621--24128661 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
24128611 TCTCTCTAAA
*
24128621 AAAATACAAAATAATTTTT
1 AAAATACAAAATAATTTAT
*
24128640 AAAATTCAAAAT-ATTTAT
1 AAAATACAAAATAATTTAT
24128658 AAAA
1 AAAA
24128662 AATTATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAATACAAAATAATTTAT
Found at i:24128691 original size:18 final size:19
Alignment explanation
Indices: 24128668--24128715 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
24128658 AAAAAATTAT
*
24128668 AAAATT-TATATTTTTAAA
1 AAAATTATAAATTTTTAAA
24128686 AAAATTATAAATTTTTAAA
1 AAAATTATAAATTTTTAAA
*
24128705 AAAATTCTAAA
1 AAAATTATAAA
24128716 GAATATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 6 0.22
19 21 0.78
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATTATAAATTTTTAAA
Found at i:24133146 original size:28 final size:28
Alignment explanation
Indices: 24133115--24133168 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
24133105 GGGGAACATG
24133115 CTGTGTAATTTACCATTTTTAGTTAATA
1 CTGTGTAATTTACCATTTTTAGTTAATA
24133143 CTGTGTAATTTACCATTTTTAGTTAA
1 CTGTGTAATTTACCATTTTTAGTTAA
24133169 GTTTTTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (28 bp):
CTGTGTAATTTACCATTTTTAGTTAATA
Found at i:24139139 original size:3 final size:3
Alignment explanation
Indices: 24139131--24139163 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
24139121 TGCACGGTTT
24139131 GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA
1 GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA
24139164 TTTACTTACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GTA
Found at i:24150304 original size:25 final size:24
Alignment explanation
Indices: 24150248--24150304 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 24
24150238 TAATTTATGT
*
24150248 ATAAATAAGAAATAGAAAGGAAAT
1 ATAAATAAGAAATAGAAAGGAAAA
24150272 ATCAAA-ATAGAAATAGAAATGGAATAA
1 AT-AAATA-AGAAATAGAAA-GGAA-AA
24150299 ATAAAT
1 ATAAAT
24150305 CCATGTATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
24 3 0.11
25 14 0.52
26 7 0.26
27 3 0.11
ACGTcount: A:0.65, C:0.02, G:0.14, T:0.19
Consensus pattern (24 bp):
ATAAATAAGAAATAGAAAGGAAAA
Found at i:24150417 original size:14 final size:14
Alignment explanation
Indices: 24150398--24150429 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
24150388 AGTTTGTTAC
24150398 AAAATAATAATAAT
1 AAAATAATAATAAT
24150412 AAAATAATAATAAT
1 AAAATAATAATAAT
24150426 AAAA
1 AAAA
24150430 CATCAAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (14 bp):
AAAATAATAATAAT
Found at i:24150497 original size:68 final size:69
Alignment explanation
Indices: 24150408--24150553 Score: 249
Period size: 68 Copynumber: 2.1 Consensus size: 69
24150398 AAAATAATAA
* *
24150408 TAATAAAATAATAATAATAAAACATCAAGTTTGTTTTACTAATCAAATGCTAGATTTTGTTACAA
1 TAATACAATAATAATAATAAAACATCAAGTTTATTTTACTAATCAAATGCTAGATTTTGTTACAA
*
24150473 CCAT
66 CAAT
*
24150477 TAATACAA-AATAATAATAAAACATCAAGTTTATTTTACTAATCAAATGTTAGATTTTGTTACAA
1 TAATACAATAATAATAATAAAACATCAAGTTTATTTTACTAATCAAATGCTAGATTTTGTTACAA
24150541 CAAT
66 CAAT
24150545 TAATACAAT
1 TAATACAAT
24150554 TAATTCAATT
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
68 65 0.90
69 7 0.10
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.36
Consensus pattern (69 bp):
TAATACAATAATAATAATAAAACATCAAGTTTATTTTACTAATCAAATGCTAGATTTTGTTACAA
CAAT
Found at i:24150554 original size:9 final size:9
Alignment explanation
Indices: 24150540--24150592 Score: 74
Period size: 9 Copynumber: 6.1 Consensus size: 9
24150530 TTTTGTTACA
24150540 ACAATTAAT
1 ACAATTAAT
24150549 ACAATTAAT
1 ACAATTAAT
*
24150558 TCAATT-A-
1 ACAATTAAT
24150565 ACAATTAAT
1 ACAATTAAT
*
24150574 ACAATTACT
1 ACAATTAAT
24150583 ACAATTAAT
1 ACAATTAAT
24150592 A
1 A
24150593 ATTTGATAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 5 0.13
8 2 0.05
9 31 0.82
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (9 bp):
ACAATTAAT
Found at i:24150570 original size:16 final size:17
Alignment explanation
Indices: 24150549--24150592 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
24150539 AACAATTAAT
*
24150549 ACAATTAATTCAATTA-
1 ACAATTAATACAATTAC
24150565 ACAATTAATACAATTAC
1 ACAATTAATACAATTAC
24150582 TACAATTAATA
1 -ACAATTAATA
24150593 ATTTGATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 15 0.60
18 10 0.40
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (17 bp):
ACAATTAATACAATTAC
Found at i:24150573 original size:25 final size:25
Alignment explanation
Indices: 24150539--24150595 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
24150529 ATTTTGTTAC
*
24150539 AACAATTAATACAATTAATTCAATT
1 AACAATTAATACAATTAATACAATT
*
24150564 AACAATTAATACAATTACTACAATT
1 AACAATTAATACAATTAATACAATT
*
24150589 AATAATT
1 AACAATT
24150596 TGATAATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (25 bp):
AACAATTAATACAATTAATACAATT
Found at i:24150595 original size:16 final size:16
Alignment explanation
Indices: 24150541--24150595 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 16
24150531 TTTGTTACAA
24150541 CAATTAATACAATTAATT
1 CAATT-ATACAATTAA-T
24150559 CAATTA-ACAATTAAT
1 CAATTATACAATTAAT
24150574 ACAATTACTACAATTAAT
1 -CAATTA-TACAATTAAT
24150592 -AATT
1 CAATT
24150596 TGATAATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
15 1 0.03
16 18 0.53
17 1 0.03
18 14 0.41
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (16 bp):
CAATTATACAATTAAT
Found at i:24150686 original size:16 final size:16
Alignment explanation
Indices: 24150665--24150706 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
24150655 AATAATTTGA
*
24150665 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
24150681 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
24150697 TAGTTTTAAT
1 TAATTTTAAT
24150707 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:24150740 original size:23 final size:23
Alignment explanation
Indices: 24150682--24150741 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 23
24150672 ACTAACAATT
* * * *
24150682 AATTTTAA-TAACAATTAGTTTT
1 AATTTTAATTAAAAAATAATTTA
24150704 AATTTT-ATTAAAAAATAATTTA
1 AATTTTAATTAAAAAATAATTTA
24150726 AATTTTAATTAAAAAA
1 AATTTTAATTAAAAAA
24150742 GGGTCGAGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 1 0.03
22 22 0.69
23 9 0.28
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
AATTTTAATTAAAAAATAATTTA
Found at i:24151688 original size:26 final size:26
Alignment explanation
Indices: 24151645--24151708 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
24151635 TTCTTTAATT
*
24151645 TTTTATAATATTTTT-AAAAATATAAA
1 TTTTA-AAAATTTTTAAAAAATATAAA
* * *
24151671 TTTTAGAAATTTTATAAAAAATTTGAA
1 TTTTAAAAATTTT-TAAAAAATATAAA
24151698 TTTTAAAAATT
1 TTTTAAAAATT
24151709 ATTTTGAACT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
25 6 0.19
26 6 0.19
27 19 0.61
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (26 bp):
TTTTAAAAATTTTTAAAAAATATAAA
Found at i:24151729 original size:14 final size:14
Alignment explanation
Indices: 24151710--24151739 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
24151700 TTAAAAATTA
*
24151710 TTTTGAACTTTTTG
1 TTTTGAAATTTTTG
24151724 TTTTGAAATTTTTG
1 TTTTGAAATTTTTG
24151738 TT
1 TT
24151740 GAGAGAGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.03, G:0.13, T:0.67
Consensus pattern (14 bp):
TTTTGAAATTTTTG
Found at i:24153856 original size:21 final size:21
Alignment explanation
Indices: 24153818--24153868 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
24153808 CATTGTTTCT
** * *
24153818 AATCTCACTGCTATAGTATCC
1 AATCTCACCACTACAGTAACC
*
24153839 AATCTCACCACTACAGTAACT
1 AATCTCACCACTACAGTAACC
24153860 AATCTCACC
1 AATCTCACC
24153869 GCCACTGCTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.33, G:0.06, T:0.27
Consensus pattern (21 bp):
AATCTCACCACTACAGTAACC
Found at i:24157849 original size:24 final size:24
Alignment explanation
Indices: 24157817--24157867 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
24157807 TACTTGGGTA
*
24157817 ATTTGCCGTCAATTCATCCTTTAC
1 ATTTGCCGTCAATTCATCATTTAC
* *
24157841 ATTTTCCGTCAGTTCATCATTTAC
1 ATTTGCCGTCAATTCATCATTTAC
24157865 ATT
1 ATT
24157868 CGTAGTGCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.25, G:0.08, T:0.45
Consensus pattern (24 bp):
ATTTGCCGTCAATTCATCATTTAC
Found at i:24167749 original size:21 final size:21
Alignment explanation
Indices: 24167723--24167763 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
24167713 AGACGAGCAA
* *
24167723 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
24167744 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
24167764 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Done.