Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 65 of 208
Found at i:24172785 original size:22 final size:22
Alignment explanation
Indices: 24172757--24172799 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
24172747 AATTTAATTG
*
24172757 TAAAAATATATAATTATTAATA
1 TAAAAATATATAATTAATAATA
*
24172779 TAAAAATATATATTTAATAAT
1 TAAAAATATATAATTAATAAT
24172800 TTATTGATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAAAATATATAATTAATAATA
Found at i:24173347 original size:23 final size:22
Alignment explanation
Indices: 24173303--24173357 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
24173293 ATAATAATAT
* *
24173303 TATAATATATATTTTTGTATTAA
1 TATAA-ATATAATTTTATATTAA
24173326 TATAAATATAATTTTATAATTAA
1 TATAAATATAATTTTAT-ATTAA
*
24173349 AATTAAATA
1 TA-TAAATA
24173358 AAAATTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.37
23 11 0.41
24 6 0.22
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TATAAATATAATTTTATATTAA
Found at i:24173791 original size:11 final size:11
Alignment explanation
Indices: 24173775--24173813 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
24173765 TTTATAAATA
24173775 TATAAATTAAT
1 TATAAATTAAT
*
24173786 TATAAAGTATAT
1 TATAAATTA-AT
24173798 TATTAAATTAAT
1 TA-TAAATTAAT
24173810 TATA
1 TATA
24173814 TTATAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 10 0.42
12 8 0.33
13 6 0.25
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (11 bp):
TATAAATTAAT
Found at i:24173825 original size:14 final size:17
Alignment explanation
Indices: 24173793--24173830 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
24173783 AATTATAAAG
24173793 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
24173810 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
24173824 TATATTA
1 TATATTA
24173831 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:24173938 original size:13 final size:13
Alignment explanation
Indices: 24173922--24173946 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24173912 TATATTTAAT
24173922 TATTAAATTATTA
1 TATTAAATTATTA
24173935 TATTAAATTATT
1 TATTAAATTATT
24173947 GTTGTAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTAAATTATTA
Found at i:24173959 original size:3 final size:3
Alignment explanation
Indices: 24173953--24173984 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
24173943 TATTGTTGTA
24173953 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
24173985 CAAATAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:24182132 original size:3 final size:3
Alignment explanation
Indices: 24182124--24182154 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
24182114 AGATGGCAAC
24182124 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
24182155 TTGGATTGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:24186995 original size:2 final size:2
Alignment explanation
Indices: 24186988--24187016 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
24186978 ATGTGTACAT
24186988 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
24187017 ATGAAAGTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:24189368 original size:17 final size:17
Alignment explanation
Indices: 24189346--24189381 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
24189336 AGATTGACAA
24189346 AATCCAGAAGATCAATG
1 AATCCAGAAGATCAATG
24189363 AATCCAGAAGATCAATG
1 AATCCAGAAGATCAATG
24189380 AA
1 AA
24189382 GCTAAAGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (17 bp):
AATCCAGAAGATCAATG
Found at i:24211944 original size:19 final size:20
Alignment explanation
Indices: 24211907--24211946 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
24211897 TCTTTTAGCA
* *
24211907 TTCATTTCATGCATTTGCAT
1 TTCATTACATGCATATGCAT
24211927 TTCATTACAT-CATATGCAT
1 TTCATTACATGCATATGCAT
24211946 T
1 T
24211947 AAACACAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.47
Consensus pattern (20 bp):
TTCATTACATGCATATGCAT
Found at i:24214834 original size:8 final size:7
Alignment explanation
Indices: 24214781--24214836 Score: 51
Period size: 7 Copynumber: 7.7 Consensus size: 7
24214771 TTGAGTCATT
24214781 AAAAATG
1 AAAAATG
*
24214788 ATGAAATG
1 A-AAAATG
24214796 AAAAAATG
1 -AAAAATG
*
24214804 AAAAGTG
1 AAAAATG
*
24214811 -AAAAGG
1 AAAAATG
24214817 AAAAATG
1 AAAAATG
24214824 AAAAATGG
1 AAAAAT-G
24214832 AAAAA
1 AAAAA
24214837 GTAAAATGGA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
6 4 0.10
7 18 0.46
8 16 0.41
9 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.20, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:24214834 original size:21 final size:20
Alignment explanation
Indices: 24214797--24214844 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
24214787 GATGAAATGA
* *
24214797 AAAAATGAAAAGTGAAAAGG
1 AAAAATGAAAAATGAAAAAG
24214817 AAAAATGAAAAATGGAAAAAG
1 AAAAATGAAAAAT-GAAAAAG
*
24214838 TAAAATG
1 AAAAATG
24214845 GAGAGGCCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.67, C:0.00, G:0.21, T:0.12
Consensus pattern (20 bp):
AAAAATGAAAAATGAAAAAG
Found at i:24214842 original size:14 final size:14
Alignment explanation
Indices: 24214804--24214846 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
24214794 TGAAAAAATG
24214804 AAAAGTGAAAA-GGA
1 AAAAGT-AAAATGGA
*
24214818 AAAATGAAAAATGGA
1 AAAA-GTAAAATGGA
24214833 AAAAGTAAAATGGA
1 AAAAGTAAAATGGA
24214847 GAGGCCAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.65, C:0.00, G:0.23, T:0.12
Consensus pattern (14 bp):
AAAAGTAAAATGGA
Found at i:24216653 original size:44 final size:44
Alignment explanation
Indices: 24216568--24216653 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 44
24216558 CCAGTAACTC
* * *
24216568 TATCCCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCCCCCTAGGCAGCAGTGGAATAGATCGAAGATGACAGATCT
* * * *
24216612 TATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGAT
1 TATCCCCCTAGGCAGCAGTGGAATAGATCGAAGATGACAGAT
24216654 TTTACCTCAC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (44 bp):
TATCCCCCTAGGCAGCAGTGGAATAGATCGAAGATGACAGATCT
Found at i:24216703 original size:132 final size:132
Alignment explanation
Indices: 24216098--24216695 Score: 903
Period size: 132 Copynumber: 4.5 Consensus size: 132
24216088 TTCTGCATTG
* * *
24216098 ATAGTGAAGCAGATCAAAGATGGAAGATTTTACCTCCCGGTGGTTACAGTGGAGTACATTGAAGC
1 ATAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
* * *
24216163 CAGTAATTCTACTTCCCTGGATAGCAACGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAA
66 CAGTAATTCTACTTCCCTGGACAGCAGCAGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAA
24216228 CA
131 CA
* *
24216230 ATAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGGAGC
1 ATAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
*
24216295 CAGTAATTCTACTTCCCTGGACAGCAGCAGAATAGATTAAAGATTTCAGATCTTGTCTCCCTAAA
66 CAGTAATTCTACTTCCCTGGACAGCAGCAGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAA
24216360 CA
131 CA
24216362 ATAGT-GACGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAG
1 ATAGTGGA-GCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAG
*
24216426 CCAGTAATTCTACTTTCCTGGACAGCAGCAGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAA
65 CCAGTAATTCTACTTCCCTGGACAGCAGCAGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAA
*
24216491 GCA
130 ACA
* * **
24216494 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCTTGTGGTTACAGCAGAGTACATTGAAGC
1 ATAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
* * * ** * * *
24216559 CAGTAACTCTA-TCCCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAG
66 CAGTAATTCTACT-TCCCTGGACAGCAGCAGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAA
*
24216623 GCA
130 ACA
* * * * *
24216626 GTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCACTGAGGTTACAGTGGAGTACATTGAAGC
1 ATAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
24216691 CAGTA
66 CAGTA
24216696 TTCCTATCTC
Statistics
Matches: 429, Mismatches: 34, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
131 3 0.01
132 424 0.99
133 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (132 bp):
ATAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
CAGTAATTCTACTTCCCTGGACAGCAGCAGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAA
CA
Found at i:24218170 original size:3 final size:3
Alignment explanation
Indices: 24218152--24218193 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
24218142 TTACTCTTTA
*
24218152 ATT ATT -TT TTT A-T ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
24218194 CATTTATATT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
2 4 0.11
3 32 0.89
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:24226975 original size:68 final size:67
Alignment explanation
Indices: 24226864--24227014 Score: 169
Period size: 68 Copynumber: 2.2 Consensus size: 67
24226854 AAGGAGATTT
* ** * * * * * *
24226864 AAATGTGTAAGACCATAGTTCGGTTATGGCAACATAGAGGGTCCGCTAGGATATTAAGCATTTGG
1 AAATGTGTAAGACCATAGCTCGACTATGACAACATAGAAGGTCCACCAGGACATTAAACA--TGG
24226929 -GTA
64 TGTA
* * *
24226932 AAATGTGTGAGACCATAGCTCGACTATGACGACATAGAAGGTCCACCAGGACCTTAAACATGGTG
1 AAATGTGTAAGACCATAGCTCGACTATGACAACATAGAAGGTCCACCAGGACATTAAACATGGTG
24226997 TA
66 TA
24226999 AAATGTGTAAGACCAT
1 AAATGTGTAAGACCAT
24227015 GGCTAGGCTA
Statistics
Matches: 69, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
66 3 0.04
67 18 0.26
68 48 0.70
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (67 bp):
AAATGTGTAAGACCATAGCTCGACTATGACAACATAGAAGGTCCACCAGGACATTAAACATGGTG
TA
Found at i:24229609 original size:22 final size:22
Alignment explanation
Indices: 24229577--24229640 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
24229567 TAAAAAATAA
24229577 TTTTTCCCTATAAAAACTCAAG
1 TTTTTCCCTATAAAAACTCAAG
*
24229599 TTTTTCTCTATAAAAA-TCAAG
1 TTTTTCCCTATAAAAACTCAAG
** *
24229620 TAATTCCCTATAAAATCTCAA
1 TTTTTCCCTATAAAAACTCAA
24229641 ATTTATCATT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
21 17 0.47
22 19 0.53
ACGTcount: A:0.39, C:0.20, G:0.03, T:0.38
Consensus pattern (22 bp):
TTTTTCCCTATAAAAACTCAAG
Found at i:24229618 original size:21 final size:21
Alignment explanation
Indices: 24229569--24229634 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
24229559 ATTAATTCTA
24229569 AAAAAT-AA-TTTTTCCCTAT
1 AAAAATCAAGTTTTTCCCTAT
*
24229588 AAAAACTCAAGTTTTTCTCTAT
1 AAAAA-TCAAGTTTTTCCCTAT
**
24229610 AAAAATCAAGTAATTCCCTAT
1 AAAAATCAAGTTTTTCCCTAT
24229631 AAAA
1 AAAA
24229635 TCTCAAATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.12
20 1 0.03
21 19 0.47
22 15 0.38
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.35
Consensus pattern (21 bp):
AAAAATCAAGTTTTTCCCTAT
Found at i:24231974 original size:91 final size:89
Alignment explanation
Indices: 24231859--24232040 Score: 258
Period size: 91 Copynumber: 2.0 Consensus size: 89
24231849 TCAGAGAGAA
* ** **
24231859 ACTTTACTTACAAGATTGAATTGAATGATTTAACCTCTTTCTACGTTAATGTAATATAAGTTTAA
1 ACTTCACTTACAAGATTGAATTGAATGATTTAACCTCTTTCTACCCTAATGTAATAT---TCCAA
24231924 ATTG-TTCTTTGATTGATTAGATTTTC
63 ATTGTTTCTTTGATTGATTAGATTTTC
* *
24231950 ACTTCACTTACGAGATTGAATTGAATGATTTAACCTCTTTCTACCCTAATGTAATCTTCCAAATT
1 ACTTCACTTACAAGATTGAATTGAATGATTTAACCTCTTTCTACCCTAATGTAATATTCCAAATT
24232015 GTTTTCTTTGATTGATTAGATTTTC
66 G-TTTCTTTGATTGATTAGATTTTC
24232040 A
1 A
24232041 TTTGATTCAA
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
88 7 0.09
90 23 0.28
91 52 0.63
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (89 bp):
ACTTCACTTACAAGATTGAATTGAATGATTTAACCTCTTTCTACCCTAATGTAATATTCCAAATT
GTTTCTTTGATTGATTAGATTTTC
Found at i:24233664 original size:12 final size:12
Alignment explanation
Indices: 24233647--24233672 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24233637 GAAAAATCAC
24233647 TTTTGGACCAAA
1 TTTTGGACCAAA
24233659 TTTTGGACCAAA
1 TTTTGGACCAAA
24233671 TT
1 TT
24233673 GAAAGAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (12 bp):
TTTTGGACCAAA
Found at i:24240984 original size:371 final size:370
Alignment explanation
Indices: 24240254--24240997 Score: 1267
Period size: 371 Copynumber: 2.0 Consensus size: 370
24240244 GGAATGAGAT
*
24240254 TTCATTTGGAAAACACACCAACAAATTCTAATATTTTTCTTTCCTTCCTTCATTTTCTAATATTT
1 TTCATTTGGAAAACACACCAACAAATTCTAATATTTTTCTTTCCTTCCTTCATTTTCTAATATTA
*
24240319 TTAGATTATTCTATAAAGTATTACTGCAGAAATCATTTGTAAAAATTGAGTTTCTTGTTATACAT
66 TTAGATTATTCTATAAAGTATTACTACAGAAATCATTTGTAAAAATTGAGTTTCTTGTTATACAT
** *
24240384 TGCTCAGTGTGTAGTGGACTATTCTCGTTAGTGCAAAACGCAAATAGTCATTGGCTCCATTGTAT
131 TGCTCAGTGCATAGTGGACTATTCTCGTCAGTGCAAAACGCAAATAGTCATTGGCTCCATTGTAT
*
24240449 CCTCGAGGTTAATTTGCTTGGAACTCATTTGCACACCAAAGATAGGTGGGGGCGAATATAACCTT
196 CCTCAAGGTTAATTTGCTTGGAACTCATTTGCACACCAAAGATAGGTGGGGGCGAATATAACCTT
*
24240514 AAAGATAGTGACTTGATACACGCCTTGGAGTCTTGTCCTATTTCTTCTTTTTCTGTTCGAGTTCC
261 AAAGATAGTGACTTGATACACGCCTTGGAGCCTTGTCCTATTTCTTCTTTTTCTGTTCGAGTTCC
*
24240579 GTTCATGTGTTTGAGATTTTCCTCACCCGAGATTTCG-ACTAACAA
326 GTTCATGTGTTCGAGATTTTCCTCACCCGAGATTT-GAACTAACAA
* * *
24240624 TTCATTTGGAAGACACACCAACAAATTCTTATATTCTTTCTTTCCTTCCTTTATTTTCTAATATT
1 TTCATTTGGAAAACACACCAACAAATTCTAATATT-TTTCTTTCCTTCCTTCATTTTCTAATATT
* *
24240689 ATTAGATTATTCTATAAAGTATTACTACAGAAATCTTTTGTAGAAATTGAGTTTCTTGTTATACA
65 ATTAGATTATTCTATAAAGTATTACTACAGAAATCATTTGTAAAAATTGAGTTTCTTGTTATACA
*
24240754 TTGCTCAGTGCATAGTGGACTATTCTCGTCAGTGCAAAACGCAAATAGTCATTGGCTTCATTGTA
130 TTGCTCAGTGCATAGTGGACTATTCTCGTCAGTGCAAAACGCAAATAGTCATTGGCTCCATTGTA
*
24240819 TCCTCAAGGTTAATTTGCTTGGAACTCATTTGCACACCGAAGATAGGTGGGGGCGAATATAACCT
195 TCCTCAAGGTTAATTTGCTTGGAACTCATTTGCACACCAAAGATAGGTGGGGGCGAATATAACCT
*
24240884 TAAAGATAGT-AGCTTGATACACGCCTTGGAGCCTTGTCCTATTTCTTCTTTTTCTGTTTGAGTT
260 TAAAGATAGTGA-CTTGATACACGCCTTGGAGCCTTGTCCTATTTCTTCTTTTTCTGTTCGAGTT
* * * *
24240948 CCGTTCGTGTGTTCGAGATTTTTCTTACCGGAGATTTGAACTAACAA
324 CCGTTCATGTGTTCGAGATTTTCCTCACCCGAGATTTGAACTAACAA
24240995 TTC
1 TTC
24240998 CAATTATTAT
Statistics
Matches: 351, Mismatches: 20, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
370 35 0.10
371 316 0.90
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.38
Consensus pattern (370 bp):
TTCATTTGGAAAACACACCAACAAATTCTAATATTTTTCTTTCCTTCCTTCATTTTCTAATATTA
TTAGATTATTCTATAAAGTATTACTACAGAAATCATTTGTAAAAATTGAGTTTCTTGTTATACAT
TGCTCAGTGCATAGTGGACTATTCTCGTCAGTGCAAAACGCAAATAGTCATTGGCTCCATTGTAT
CCTCAAGGTTAATTTGCTTGGAACTCATTTGCACACCAAAGATAGGTGGGGGCGAATATAACCTT
AAAGATAGTGACTTGATACACGCCTTGGAGCCTTGTCCTATTTCTTCTTTTTCTGTTCGAGTTCC
GTTCATGTGTTCGAGATTTTCCTCACCCGAGATTTGAACTAACAA
Found at i:24245573 original size:22 final size:21
Alignment explanation
Indices: 24245545--24245601 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
24245535 AATGGTATCT
24245545 ACAAATCAAATCTCTAAGATA
1 ACAAATCAAATCTCTAAGATA
* *
24245566 ACAAAATCATATCTTCTAAGATT
1 AC-AAATCAAATC-TCTAAGATA
*
24245589 ACATATCAAATCT
1 ACAAATCAAATCT
24245602 ACGATTGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
21 3 0.10
22 17 0.57
23 10 0.33
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.30
Consensus pattern (21 bp):
ACAAATCAAATCTCTAAGATA
Found at i:24246119 original size:26 final size:25
Alignment explanation
Indices: 24246071--24246178 Score: 112
Period size: 26 Copynumber: 4.3 Consensus size: 25
24246061 CTATATTATG
* * *
24246071 GGAAGCCCATAAGAG-CTATAATCA
1 GGAAGCTCAGAAGAGCCTTTAATCA
* * * *
24246095 GGAAGTTCACAAAGAACTTTTAATCA
1 GGAAGCTCA-GAAGAGCCTTTAATCA
*
24246121 GGAAGCTCAGAAGAGCCTTTAAACA
1 GGAAGCTCAGAAGAGCCTTTAATCA
24246146 GGAAGCTCATGAAGAGCCTTTAATCA
1 GGAAGCTCA-GAAGAGCCTTTAATCA
24246172 GG-AGCTC
1 GGAAGCTC
24246179 CGGATAGCCA
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
24 7 0.10
25 30 0.43
26 32 0.46
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.20
Consensus pattern (25 bp):
GGAAGCTCAGAAGAGCCTTTAATCA
Found at i:24251469 original size:32 final size:32
Alignment explanation
Indices: 24251433--24251495 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
24251423 TCAATTAAAC
* *
24251433 CCATAAAATTTATT-AAAAAAATTTACTAAAAA
1 CCATAAAAATAATTAAAAAAAATTTA-TAAAAA
24251465 CCATAAAAATAATTAAAAAAAATTTATAAAA
1 CCATAAAAATAATTAAAAAAAATTTATAAAA
24251496 GTTGTTAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (32 bp):
CCATAAAAATAATTAAAAAAAATTTATAAAAA
Found at i:24256063 original size:32 final size:30
Alignment explanation
Indices: 24256007--24256065 Score: 82
Period size: 32 Copynumber: 1.9 Consensus size: 30
24255997 TAACAATTAG
*
24256007 AAATTAATTAAATACGAATGTTTTAATAAT
1 AAATTAATTAAATACGAATATTTTAATAAT
*
24256037 AAATGTAATATAAATATGAATATTTTAAT
1 AAAT-TAAT-TAAATACGAATATTTTAAT
24256066 TATCTAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 4 0.16
31 4 0.16
32 17 0.68
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.41
Consensus pattern (30 bp):
AAATTAATTAAATACGAATATTTTAATAAT
Found at i:24258687 original size:26 final size:25
Alignment explanation
Indices: 24258639--24258746 Score: 112
Period size: 26 Copynumber: 4.3 Consensus size: 25
24258629 CTATATTATG
* * *
24258639 GGAAGCCCATAAGAG-CTATAATCA
1 GGAAGCTCAGAAGAGCCTTTAATCA
* * * *
24258663 GGAAGTTCACAAAGAACTTTTAATCA
1 GGAAGCTCA-GAAGAGCCTTTAATCA
*
24258689 GGAAGCTCAGAAGAGCCTTTAAACA
1 GGAAGCTCAGAAGAGCCTTTAATCA
24258714 GGAAGCTCATGAAGAGCCTTTAATCA
1 GGAAGCTCA-GAAGAGCCTTTAATCA
24258740 GG-AGCTC
1 GGAAGCTC
24258747 CGGATAGCCA
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
24 7 0.10
25 30 0.43
26 32 0.46
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.20
Consensus pattern (25 bp):
GGAAGCTCAGAAGAGCCTTTAATCA
Found at i:24260417 original size:4 final size:4
Alignment explanation
Indices: 24260408--24260438 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
24260398 AGAAACAACT
24260408 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
24260439 GCTAATTCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:24263880 original size:15 final size:16
Alignment explanation
Indices: 24263860--24263889 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24263850 CAGAAAGCCA
24263860 ATATTA-AAATTTTAT
1 ATATTATAAATTTTAT
24263875 ATATTATAAATTTTA
1 ATATTATAAATTTTA
24263890 ATAAAATGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATTATAAATTTTAT
Found at i:24264876 original size:18 final size:19
Alignment explanation
Indices: 24264839--24264876 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
24264829 TGGCGAGGAG
* *
24264839 AGTGATTTAGTTGTAACTT
1 AGTGAATTAGTTGAAACTT
24264858 AGTGAATTAGTT-AAACTT
1 AGTGAATTAGTTGAAACTT
24264876 A
1 A
24264877 AATCATATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.42
Consensus pattern (19 bp):
AGTGAATTAGTTGAAACTT
Found at i:24269398 original size:25 final size:25
Alignment explanation
Indices: 24269369--24269416 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
24269359 GTTAATACTA
*
24269369 TTAAAAGTGTTTTGTTAAATTCAAG
1 TTAAAAGTATTTTGTTAAATTCAAG
24269394 TTAAAAGTATTTTGTTAAATTCA
1 TTAAAAGTATTTTGTTAAATTCA
24269417 GGTTGACTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (25 bp):
TTAAAAGTATTTTGTTAAATTCAAG
Found at i:24274035 original size:43 final size:43
Alignment explanation
Indices: 24273987--24274072 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
24273977 CAAAATAAAA
* * *
24273987 ATGAAAAAGAAAAAATGGAATCATTTGGAAATGAATGTGGTTT
1 ATGAAAAAGAAAAAATAGAACCATTTGGAAATAAATGTGGTTT
*
24274030 ATGAAAATGAAAAAATAGAACCATTTGGAAATAAATGTGGTTT
1 ATGAAAAAGAAAAAATAGAACCATTTGGAAATAAATGTGGTTT
24274073 TCTCCAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.48, C:0.03, G:0.21, T:0.28
Consensus pattern (43 bp):
ATGAAAAAGAAAAAATAGAACCATTTGGAAATAAATGTGGTTT
Found at i:24276367 original size:33 final size:35
Alignment explanation
Indices: 24276330--24276426 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
24276320 ATGGTTATAT
24276330 TTAAATATTTAAAATATAATTTATATATT-C-TAA
1 TTAAATATTTAAAATATAATTTATATATTGCTTAA
* *
24276363 TTAAAT-TTTATAA-ATAATTAATATTTATTGCTTAA
1 TTAAATATTTAAAATATAATT--TATATATTGCTTAA
*
24276398 --AAATATTTAAAATTTATATTTCATATATT
1 TTAAATATTTAAAATATA-ATTT-ATATATT
24276427 AAAATATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 8 0.16
35 11 0.22
36 3 0.06
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (35 bp):
TTAAATATTTAAAATATAATTTATATATTGCTTAA
Found at i:24291687 original size:21 final size:21
Alignment explanation
Indices: 24291663--24291706 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
24291653 AAAATGATAA
24291663 AATTTTGATATAAAA-AGTGTT
1 AATTTTGAT-TAAAATAGTGTT
* *
24291684 AATTTTTATTAAAATAGTTTT
1 AATTTTGATTAAAATAGTGTT
24291705 AA
1 AA
24291707 AATACAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (21 bp):
AATTTTGATTAAAATAGTGTT
Found at i:24311702 original size:75 final size:72
Alignment explanation
Indices: 24311512--24311772 Score: 249
Period size: 70 Copynumber: 3.5 Consensus size: 72
24311502 TTTTTTGGTA
* * * *
24311512 AATTGTAAATAAGTATATATCATTGATGTAAAGTACAATAAAATACAATATAAACAATTTTTCAT
1 AATTGTAAATAAGTATAT-T-ATTGATATAAAATACAATAAAATACAATACAAACAATTTTTTAT
*
24311577 GTTTTT-TT
64 ATTTTTCTT
* * * * * *
24311585 -ATTGTAAATAAGTATATTATTGAGA-AGACATGCGATAAAATACAATACAAATAATTTTTTATT
1 AATTGTAAATAAGTATATTATTGATATA-AAATACAATAAAATACAATACAAACAATTTTTTATA
24311648 TTTTTCTT
65 TTTTTCTT
* * *
24311656 AGATTGTAAATAAGTATATATTATTAATATAAAATACAATAGAATACAAAACAAACAATTTTTTT
1 A-ATTGTAAATAAG--TATATTATTGATATAAAATACAATAAAATACAATACAAACAA-TTTTTT
* *
24311721 AAAAATTTTTCATA
62 --ATATTTTTC-TT
* *
24311735 AATTGTAAATAAGTATATTGTTGATGTAAAATACAATA
1 AATTGTAAATAAGTATATTATTGATATAAAATACAATA
24311773 GAAAATATTT
Statistics
Matches: 153, Mismatches: 24, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
69 1 0.01
70 38 0.25
71 3 0.02
72 17 0.11
73 12 0.08
75 32 0.21
76 29 0.19
78 19 0.12
79 2 0.01
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.39
Consensus pattern (72 bp):
AATTGTAAATAAGTATATTATTGATATAAAATACAATAAAATACAATACAAACAATTTTTTATAT
TTTTCTT
Found at i:24315219 original size:9 final size:9
Alignment explanation
Indices: 24315205--24315244 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
24315195 TTTGGTTAAA
24315205 AATTAACCG
1 AATTAACCG
24315214 AATTAACCG
1 AATTAACCG
*
24315223 AATTACCCG
1 AATTAACCG
*
24315232 AATTAATCG
1 AATTAACCG
24315241 AATT
1 AATT
24315245 GAATCACTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:24315373 original size:18 final size:18
Alignment explanation
Indices: 24315347--24315381 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24315337 AATTTTTATG
24315347 ATTGAGTTGGGTTGGGTA
1 ATTGAGTTGGGTTGGGTA
*
24315365 ATTGGGTTGGGTTGGGT
1 ATTGAGTTGGGTTGGGT
24315382 TGAATACTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.00, G:0.49, T:0.40
Consensus pattern (18 bp):
ATTGAGTTGGGTTGGGTA
Found at i:24320823 original size:16 final size:16
Alignment explanation
Indices: 24320793--24320855 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
24320783 TTCTCAACAT
**
24320793 AATTGTTCTTGATAAA
1 AATTGTTCTAAATAAA
* *
24320809 AATTGTTCCAAATAAT
1 AATTGTTCTAAATAAA
*
24320825 AATTATTCTTAAA-AAA
1 AATTGTTC-TAAATAAA
*
24320841 GATTGTTCTAAATAA
1 AATTGTTCTAAATAA
24320856 TGACTCTTCT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
15 4 0.11
16 29 0.81
17 3 0.08
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (16 bp):
AATTGTTCTAAATAAA
Found at i:24320827 original size:32 final size:32
Alignment explanation
Indices: 24320791--24320870 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 32
24320781 TATTCTCAAC
* *
24320791 ATAATTGTTCTTGATAAAA-ATTGTTCCAAATA
1 ATAATTATTCTT-AAAAAAGATTGTTCCAAATA
*
24320823 ATAATTATTCTTAAAAAAGATTGTTCTAAATA
1 ATAATTATTCTTAAAAAAGATTGTTCCAAATA
* * *
24320855 ATGACTCTTCTTAAAA
1 ATAATTATTCTTAAAA
24320871 TATAATTTTG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 5 0.12
32 36 0.88
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.40
Consensus pattern (32 bp):
ATAATTATTCTTAAAAAAGATTGTTCCAAATA
Found at i:24324462 original size:2 final size:2
Alignment explanation
Indices: 24324457--24324514 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
24324447 TTCCCCCAAA
24324457 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
24324499 AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG
24324515 CGATAGAGAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:24326713 original size:3 final size:3
Alignment explanation
Indices: 24326668--24326694 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
24326658 GGTAAATGAC
24326668 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
24326695 GGTAACATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:24328549 original size:175 final size:175
Alignment explanation
Indices: 24328315--24328649 Score: 501
Period size: 175 Copynumber: 1.9 Consensus size: 175
24328305 TTCAATGTAC
** * * *
24328315 TCCACTGTAACCACAGGGAGGTAAAGCCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
1 TCCACTGTAACCACAGGGAAATAAAGCCTGACGCGATCTACTCTACTATAACCTCAGAGAGATAA
* ** * * *
24328380 GATCTTTTGTTTTAATCCGCTCCACTGTAATCACAGGGAGATAGGATTACTAGCTTCAATCTGTT
66 GATCCTTCATTTTAATCCACTCCACTGTAATCACAGGGAGATAGGATTACTAACTTCAATCTGCT
*
24328445 CCGCTGTAATCTCAGGAAGATAATATCTGAAATTCTTCAGTCTGT
131 CCGCTGTAATCTCAGGAAGATAAGATCTGAAATTCTTCAGTCTGT
* * *
24328490 TCCACTGTAATCTCAGGGAAAT-AAGACCTGACGCGATCTACTCTGCTATAACCTCAGAGAGATA
1 TCCACTGTAACCACAGGGAAATAAAG-CCTGACGCGATCTACTCTACTATAACCTCAGAGAGATA
*
24328554 AGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGC
65 AGATCCTTCATTTTAATCCACTCCACTGTAATCACAGGGAGATAGGATTACTAACTTCAATCTGC
*
24328619 TCCGCTGTAATCTCAGGGAGATAAGATCTGA
130 TCCGCTGTAATCTCAGGAAGATAAGATCTGA
24328650 CACGATCTAC
Statistics
Matches: 142, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
174 3 0.02
175 139 0.98
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (175 bp):
TCCACTGTAACCACAGGGAAATAAAGCCTGACGCGATCTACTCTACTATAACCTCAGAGAGATAA
GATCCTTCATTTTAATCCACTCCACTGTAATCACAGGGAGATAGGATTACTAACTTCAATCTGCT
CCGCTGTAATCTCAGGAAGATAAGATCTGAAATTCTTCAGTCTGT
Found at i:24328650 original size:129 final size:129
Alignment explanation
Indices: 24328479--24328778 Score: 447
Period size: 129 Copynumber: 2.3 Consensus size: 129
24328469 ATCTGAAATT
* * * * * * *
24328479 CTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTATAACCT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTATAACCT
* *
24328544 CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAA
66 CAGAGAGATAAAATCCTTCATTTTAATCCACTCCACTGTAATCACAGGGAGATAGGATTACTAA
* *
24328608 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTATAACCT
* * ** *
24328673 CAGAGAGATAAAATCTTTTATTTTAATCTGCTCCACTGTAATCACAGGGAGATAGGATTACTAT
66 CAGAGAGATAAAATCCTTCATTTTAATCCACTCCACTGTAATCACAGGGAGATAGGATTACTAA
*
24328737 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAATATCTGA
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
24328779 AATTCTTCAG
Statistics
Matches: 154, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
129 154 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (129 bp):
CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTATAACCT
CAGAGAGATAAAATCCTTCATTTTAATCCACTCCACTGTAATCACAGGGAGATAGGATTACTAA
Found at i:24328803 original size:46 final size:45
Alignment explanation
Indices: 24328399--24329782 Score: 613
Period size: 44 Copynumber: 31.7 Consensus size: 45
24328389 TTTTAATCCG
* * * * *
24328399 CTCCACTGTAATCACAGGGAGATAGGAT-T-ACTAGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTCAATCTA
* * * * * *
24328443 TTCCGCTGTAATCTCAGGAAGATAATATCTGAAATTCTTCAGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCAATCTA
* * * * *
24328489 TTCCACTGTAATCTCAGGGAAATAAGACCTG-A--C-GCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTCAATCTA
** * * * ** *
24328530 CTCTGCTATAACCTCAGAGAGATAAGATCCTTCATT-TT-AATCCA
1 CTCCACTGTAATCTCAGGGAGATAAGAT-CTGAATTCTTCAATCTA
* *
24328574 CTCCACTGTAATCTCAGGGAGATAGGATTACT-AA--CTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGA-T-CTGAATTCTTCAATCTA
* * *
24328618 CTCCGCTGTAATCTCAGGGAGATAAGATCTG-A--C-ACGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTCAATCTA
* * * ** *
24328659 CTCTACTGTAA-CTTCAGAGAGATAAAATCTTTTATT-TT-AATCTG
1 CTCCACTGTAATC-TCAGGGAGATAAGATC-TGAATTCTTCAATCTA
* * * *
24328703 CTCCACTGTAATCACAGGGAGATAGGAT-T-ACTATCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTCAATCTA
* * * *
24328747 CTCCGCTGTAATCTCAGGGAGATAATATCTGAAATTCTTCAGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCAATCTA
* * * * * *
24328793 TTCCACTGTAATCTTAGGGAAATAAGACCTG-A--C-GCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTCAATCTA
** * ** *
24328834 CTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTCATT-TT-AATCCA
1 CTCCACTGTAATC-TCAGGGAGATAAGAT-CTGAATTCTTCAATCTA
*
24328878 CTCCACTGTAATCTCAGGGAGATAGGATTACT-AA--CTTCAATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGA-T-CTGAATTCTTCAATCTA
* * * *
24328922 CTCCGCTGTAATCTCAGGGAGATAAAATCTGAAATTCTTCAGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCAATCTA
* * * * * *
24328968 TTCCACTGTAATCTCAGGGAAATAAGACCTG---GC-GCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTCAATCTA
** * **
24329009 CTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTCATT-TT-AATCTA
1 CTCCACTGTAATC-TCAGGGAGATAAGAT-CTGAATTCTTCAATCTA
* *
24329053 CTCCACTGTAATCTCAGGGAGATAGGATTACT-AA--CTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGA-T-CTGAATTCTTCAATCTA
* * *
24329097 CTCCGCTGTAATCTCAGGGAGATAAGATCT-AA--C-ACGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTCAATCTA
* * ** **
24329138 CTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATT-TT-AATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGAT-CTGAATTCTTCAATCTA
* * * * *
24329182 CTCCACTGTAATCACAGAGAGATAGGAT-T-ACTATCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTCAATCTA
* ** *
24329226 CTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCAATCTA
* * * * *
24329272 TTCCACTGTAATCTCAGGGAAATAAGACCTG-A--C-GCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTCAATCTA
*** * ** *
24329313 CTCTGTTGTAA-CTTCAGAGAGATAAGATCCTTCATT-TT-AATCCA
1 CTCCACTGTAATC-TCAGGGAGATAAGAT-CTGAATTCTTCAATCTA
* * *
24329357 CTCCACTATAATCTCAGGGAGATAGGATTACT-AA--CTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGA-T-CTGAATTCTTCAATCTA
* * *
24329401 CTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCAATCTA
* * * * *
24329447 TTCCACTGTAATCTCAGGGAAATAAGACCTG-A--C-GCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTCAATCTA
** * ** *
24329488 CTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTCATT-TT-AATCCA
1 CTCCACTGTAATC-TCAGGGAGATAAGAT-CTGAATTCTTCAATCTA
* *
24329532 CTCCACTGTAATCTCAGGGAGATAGGATTACT-AA--CTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGA-T-CTGAATTCTTCAATCTA
* * * *
24329576 CTCCGCTGTAATCTCAGGGAGATAAGATCTG-A--C-ACGATATA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTCAATCTA
* * ** **
24329617 CTCTACTGTAA-CTTCAGAGAGATAAGATCATTTATT-TT-AATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGATC-TGAATTCTTCAATCTA
* * * *
24329661 CTCCACTGTAATCACAGGGAGATAGGAT-T-ACTATCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTCAATCTA
* * ** *
24329705 CTCCGCTGTAATATCAGGGAGATAAGATCTGAAATTCTTCGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCAATCTA
*
24329751 TTCCACTGTAATCTC-GAGGAGATAAGATCTGA
1 CTCCACTGTAATCTCAG-GGAGATAAGATCTGA
24329783 CGCGATCTAC
Statistics
Matches: 997, Mismatches: 242, Indels: 201
0.69 0.17 0.14
Matches are distributed among these distances:
40 7 0.01
41 206 0.21
42 42 0.04
43 28 0.03
44 467 0.47
45 28 0.03
46 211 0.21
47 8 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (45 bp):
CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTCAATCTA
Found at i:24328804 original size:175 final size:175
Alignment explanation
Indices: 24328608--24329126 Score: 867
Period size: 175 Copynumber: 3.0 Consensus size: 175
24328598 GGATTACTAA
* * * * * * *
24328608 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTT
1 CTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTT
* * * * * *
24328673 CAGAGAGATAAAATCTTTTATTTTAATCTGCTCCACTGTAATCACAGGGAGATAGGATTACTATC
66 CAGAGAGATAAGATCCTTCATTTTAATCTACTCCACTGTAATCTCAGGGAGATAGGATTACTAAC
*
24328738 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAATATCTGAAATT
131 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAATCTGAAATT
*
24328783 CTTCAGTCTGTTCCACTGTAATCTTAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTT
1 CTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTT
*
24328848 CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAAC
66 CAGAGAGATAAGATCCTTCATTTTAATCTACTCCACTGTAATCTCAGGGAGATAGGATTACTAAC
*
24328913 TTCAATCTACTCCGCTGTAATCTCAGGGAGATAAAATCTGAAATT
131 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAATCTGAAATT
*
24328958 CTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGCGCGATCTACTCTGCTGTAACTT
1 CTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTT
24329023 CAGAGAGATAAGATCCTTCATTTTAATCTACTCCACTGTAATCTCAGGGAGATAGGATTACTAAC
66 CAGAGAGATAAGATCCTTCATTTTAATCTACTCCACTGTAATCTCAGGGAGATAGGATTACTAAC
*
24329088 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
131 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAATCT
24329127 AACACGATCT
Statistics
Matches: 322, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
175 322 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (175 bp):
CTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTT
CAGAGAGATAAGATCCTTCATTTTAATCTACTCCACTGTAATCTCAGGGAGATAGGATTACTAAC
TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAATCTGAAATT
Found at i:24328836 original size:304 final size:305
Alignment explanation
Indices: 24328348--24329260 Score: 1213
Period size: 304 Copynumber: 3.0 Consensus size: 305
24328338 AAGCCTGATG
*
24328348 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTGTTTTAATCCGCTCCACTGTAATCA
1 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTGTTTTAATCTGCTCCACTGTAATCA
* * *
24328413 CAGGGAGATAGGATTACTAGCTTCAATCTGTTCCGCTGTAATCTCAGGAAGATAATATCTGAAAT
66 CAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAATATCTGAAAT
* *
24328478 TCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTATAACC
131 TCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACT
24328543 TCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAA
196 TCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAA
*
24328608 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACA-
261 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
* *
24328652 CGATCTACTCTACTGTAACTTCAGAGAGATAAAATCTTTTATTTTAATCTGCTCCACTGTAATCA
1 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTGTTTTAATCTGCTCCACTGTAATCA
24328717 CAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAATATCTGAAAT
66 CAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAATATCTGAAAT
*
24328782 TCTTCAGTCTGTTCCACTGTAATCTTAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACT
131 TCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACT
24328847 TCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAA
196 TCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAA
* *
24328912 CTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAAATCTGAAATT
261 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAA-T
* ** * * * * ***** * **
24328958 CTTCAGTCTGTTCCACTGTAA-TCTCAGGGAAATAAGA-C--CTGGCGCGATCTACTCTGCTGTA
1 C--GA-TCTACTCTACTGTAACT-TCAGAGAGATAAGATCTTTTGTTTTAATCTGCTCCACTGTA
* * * * * * *
24329019 A-CTTCAGAGAGATAAGA-TCCT-TCATTTTAATCTACTCCACTGTAATCTCAGGGAGATAGGAT
62 ATC-ACAGGGAGATAGGATTACTATC--TTCAATCTGCTCCGCTGTAATCTCAGGGAGATA--AT
* * * * * * *
24329081 -TACT--AA--CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAACACGATCTACTC
122 AT-CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTC
* * * * *
24329141 TACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCACAGAGAGATA
186 TGCTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATA
*
24329206 GGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
251 GGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
24329261 TCTTCGGTCT
Statistics
Matches: 545, Mismatches: 52, Indels: 25
0.88 0.08 0.04
Matches are distributed among these distances:
303 1 0.00
304 451 0.83
305 4 0.01
306 58 0.11
307 1 0.00
308 7 0.01
309 23 0.04
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (305 bp):
CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTGTTTTAATCTGCTCCACTGTAATCA
CAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAATATCTGAAAT
TCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACT
TCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAA
CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
Found at i:24329147 original size:129 final size:129
Alignment explanation
Indices: 24328916--24329255 Score: 468
Period size: 129 Copynumber: 2.6 Consensus size: 129
24328906 TACTAACTTC
* * * * * *
24328916 AATCTACTCCGCTGTAATCTCAGGGAGATA-AAAT-CTGAAATTCTTCAGTCTGTTCCACTGTAA
1 AATCTACTCCACTGTAATCTCAGGGAGATAGGATTACT--AA--CTTCAATCTGCTCCGCTGTAA
* * ** * *
24328979 TCTCAGGGAAATAAGACCTGGCGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCAT
62 TCTCAGGGAGATAAGATCTAACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCAT
24329044 TTT
127 TTT
24329047 AATCTACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTC
1 AATCTACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTC
*
24329112 AGGGAGATAAGATCTAACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
66 AGGGAGATAAGATCTAACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTT
** * * *
24329176 AATCCGCTCCACTGTAATCACAGAGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTC
1 AATCTACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTC
24329241 AGGGAGATAAGATCT
66 AGGGAGATAAGATCT
24329256 GAAATTCTTC
Statistics
Matches: 189, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
129 154 0.81
131 31 0.16
132 2 0.01
133 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (129 bp):
AATCTACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTC
AGGGAGATAAGATCTAACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTT
Found at i:24329212 original size:479 final size:479
Alignment explanation
Indices: 24328341--24329819 Score: 2645
Period size: 479 Copynumber: 3.1 Consensus size: 479
24328331 GGAGGTAAAG
* * * ** *
24328341 CCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTGTTTTAATCCGCTCCACT
1 CCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACT
* * * * *
24328406 GTAATCACAGGGAGATAGGATTACTAGCTTCAATCTGTTCCGCTGTAATCTCAGGAAGATAATAT
66 GTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAAT
24328471 CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGC
131 CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGC
* *
24328536 TATAACCTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGA
196 TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGA
24328601 TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACT
261 TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACT
* * *
24328666 GTAACTTCAGAGAGATAAAATCTTTTATTTTAATCTGCTCCACTGTAATCACAGGGAGATAGGAT
326 GTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCACAGGGAGATAGGAT
* *
24328731 TACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAATATCTGAAATTCTTCAGTCTGTTC
391 TACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTC
24328796 CACTGTAATCTTAGGGAAATAAGA
456 CACTGTAATCTTAGGGAAATAAGA
24328820 CCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACT
1 CCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACT
*
24328885 GTAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAAAT
66 GTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAAT
*
24328950 CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGCGCGATCTACTCTGC
131 CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGC
*
24329015 TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCTACTCCACTGTAATCTCAGGGAGATAGGA
196 TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGA
*
24329080 TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAACACGATCTACTCTACT
261 TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACT
* *
24329145 GTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCACAGAGAGATAGGAT
326 GTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCACAGGGAGATAGGAT
24329210 TACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTC
391 TACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTC
*
24329275 CACTGTAATCTCAGGGAAATAAGA
456 CACTGTAATCTTAGGGAAATAAGA
*
24329299 CCTGACGCGATCTACTCTGTTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACT
1 CCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACT
* *
24329364 ATAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
66 GTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAAT
24329429 CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGC
131 CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGC
24329494 TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGA
196 TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGA
*
24329559 TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATATACTCTACT
261 TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACT
24329624 GTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCACAGGGAGATAGGAT
326 GTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCACAGGGAGATAGGAT
*
24329689 TACTATCTTCAATCTGCTCCGCTGTAATATCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTC
391 TACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTC
* *
24329754 CACTGTAATC-TCGAGGAGATAAGA
456 CACTGTAATCTTAG-GGAAATAAGA
*
24329778 TCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGAT
1 CCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGAT
24329820 ACTTTCTTCA
Statistics
Matches: 959, Mismatches: 40, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
478 1 0.00
479 958 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (479 bp):
CCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACT
GTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAAT
CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGC
TGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGA
TTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACT
GTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCACAGGGAGATAGGAT
TACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTC
CACTGTAATCTTAGGGAAATAAGA
Found at i:24329283 original size:175 final size:175
Alignment explanation
Indices: 24329047--24329607 Score: 905
Period size: 175 Copynumber: 3.2 Consensus size: 175
24329037 CCTTCATTTT
* * * * * *
24329047 AATCTACTCCACTGTAATCTCAGGGAGATAGGAT-T-ACTAA--CTTCAATCTGCTCCGCTGTAA
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA--AATTCTTCAGTCTGTTCCACTGTAA
* * * * * *
24329108 TCTCAGGGAGATAAGATCTAACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAT
64 TCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCAT
* * * *
24329173 TTTAATCCGCTCCACTGTAATCACAGAGAGATAGGATTACTATCTTC
129 TTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC
*
24329220 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATC
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAGTCTGTTCCACTGTAATC
*
24329285 TCAGGGAAATAAGACCTGACGCGATCTACTCTGTTGTAACTTCAGAGAGATAAGATCCTTCATTT
66 TCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCATTT
*
24329350 TAATCCACTCCACTATAATCTCAGGGAGATAGGATTACTAACTTC
131 TAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC
24329395 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAGTCTGTTCCACTGTAATC
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAGTCTGTTCCACTGTAATC
24329460 TCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCATTT
66 TCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCATTT
24329525 TAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC
131 TAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC
24329570 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
24329608 CACGATATAC
Statistics
Matches: 362, Mismatches: 22, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
173 33 0.09
174 1 0.00
175 328 0.91
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (175 bp):
AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAGTCTGTTCCACTGTAATC
TCAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCATTT
TAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC
Found at i:24329347 original size:304 final size:302
Alignment explanation
Indices: 24328479--24329734 Score: 1281
Period size: 304 Copynumber: 4.1 Consensus size: 302
24328469 ATCTGAAATT
* * * * * * * * * *
24328479 CTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGCTATAACCT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAACACGATCTACTCTACTGTAACTT
*
24328544 CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAAC
66 CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGAGAGATAGGATTACTAAC
* * * * *
24328609 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTG--AC-ACGATCTACTCTACTGTAA-
131 TTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAACTTCAATCTGCTCCACTGTAAT
* * * * * **** * * * * *
24328670 CTTCAGAGAGATAAAATCTTTTATTTTAATCTGCTCCACTGTAA-TCACAGGGAGATAGGAT--T
196 C-TCAGGGAAATAAGA-C-CTGA-CGCGATCTACTCTACTGTAACT-TCAGAGAGATAAGATCCT
* * ** *
24328732 ACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATA--A-TATCTGAAA
256 TC-AT-TTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTA-CT--AA
* * * * * * * * *
24328781 TTCTTCAGTCTGTTCCACTGTAATCTTAGGGAAATAAGACCTGACGCGATCTACTCTGCTGTAAC
1 --CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAACACGATCTACTCTACTGTAAC
*
24328846 TTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTA
64 TTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGAGAGATAGGATTACTA
* * *
24328911 ACTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAAATCTGAAATTCTTCAGTCTGTTCCACTG
129 ACTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAA--CTTCAATCTGCTCCACTG
* *
24328976 TAATCTCAGGGAAATAAGACCTGGCGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTT
192 TAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT
*
24329041 CATTTTAATCTACTCCACTGTAATCTCAGGGAGATAGGATTACTAA
257 CATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAA
24329087 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAACACGATCTACTCTACTGTAACTT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAACACGATCTACTCTACTGTAACTT
* * * *
24329152 CAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCACAGAGAGATAGGATTACTATC
66 CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGAGAGATAGGATTACTAAC
* ** *
24329217 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTA
131 TTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAA--CTTCAATCTGCTCCACTGTA
**
24329282 ATCTCAGGGAAATAAGACCTGACGCGATCTACTCTGTTGTAACTTCAGAGAGATAAGATCCTTCA
194 ATCTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCA
*
24329347 TTTTAATCCACTCCACTATAATCTCAGGGAGATAGGATTACTAA
259 TTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAA
* ** *
24329391 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAA-ATTCTTCAGTCTGTTCCACTG
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-AACA--C--GA-TCTACTCTACTG
* * * **** * ** *
24329455 TAA-TCTCAGGGAAATAAGA-CC-TGA-CGCGATCTACTCTGCTGTAA-CTTCAGAGAGATAAGA
60 TAACT-TCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATC-TCAGAGAGATAGGA
* * * * * * *
24329515 -TCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGAT-T-ACTAACTTCAATCTGC
123 TTAC-TAACTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGA--AACTTCAATCTGC
* * * * *
24329577 TCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATATACTCTACTGTAACTTCAGAGAGATAA
185 TCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAA
* * * * *
24329642 GATCATTTATTTTAATCCGCTCCACTGTAATCACAGGGAGATAGGATTACTAT
250 GATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAA
*
24329695 CTTCAATCTGCTCCGCTGTAATATCAGGGAGATAAGATCT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
24329735 GAAATTCTTC
Statistics
Matches: 834, Mismatches: 95, Indels: 46
0.86 0.10 0.05
Matches are distributed among these distances:
304 642 0.77
305 6 0.01
306 118 0.14
307 6 0.01
308 11 0.01
309 50 0.06
310 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (302 bp):
CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAACACGATCTACTCTACTGTAACTT
CAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGAGAGATAGGATTACTAAC
TTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAACTTCAATCTGCTCCACTGTAAT
CTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATT
TTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAA
Found at i:24329608 original size:129 final size:129
Alignment explanation
Indices: 24329401--24329736 Score: 478
Period size: 129 Copynumber: 2.6 Consensus size: 129
24329391 CTTCAATCTG
* * * * *
24329401 CTCCGCTGTAATCTCAGGGAGATAAGA-T-CTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACT--AA--CTTCAATCTGCTCCGCTGTAATCTCAG
* * * * * *
24329464 GGAAATAAGACCTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTCATTTTAAT
62 GGAGATAAGATCTGACACGATATACTCTACTGTAACTTCAGAGAGATAAGATCATTCATTTTAAT
24329529 CCA
127 CCA
24329532 CTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAG
* *
24329597 ATAAGATCTGACACGATATACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCG
66 ATAAGATCTGACACGATATACTCTACTGTAACTTCAGAGAGATAAGATCATTCATTTTAATCCA
* * *
24329661 CTCCACTGTAATCACAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATATCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAG
24329726 ATAAGATCTGA
66 ATAAGATCTGA
24329737 AATTCTTCGG
Statistics
Matches: 187, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
129 157 0.84
131 27 0.14
132 1 0.01
133 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (129 bp):
CTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAG
ATAAGATCTGACACGATATACTCTACTGTAACTTCAGAGAGATAAGATCATTCATTTTAATCCA
Found at i:24331258 original size:8 final size:8
Alignment explanation
Indices: 24331247--24331290 Score: 81
Period size: 8 Copynumber: 5.6 Consensus size: 8
24331237 CAATTTTTAC
24331247 TTTTTCAT
1 TTTTTCAT
24331255 TTTTTCAT
1 TTTTTCAT
24331263 TTTTTCA-
1 TTTTTCAT
24331270 TTTTTCAT
1 TTTTTCAT
24331278 TTTTTCAT
1 TTTTTCAT
24331286 TTTTT
1 TTTTT
24331291 TTGACTCAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
7 7 0.20
8 28 0.80
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTCAT
Found at i:24331265 original size:15 final size:15
Alignment explanation
Indices: 24331247--24331289 Score: 77
Period size: 15 Copynumber: 2.8 Consensus size: 15
24331237 CAATTTTTAC
24331247 TTTTTCATTTTTTCAT
1 TTTTTCA-TTTTTCAT
24331263 TTTTTCATTTTTCAT
1 TTTTTCATTTTTCAT
24331278 TTTTTCATTTTT
1 TTTTTCATTTTT
24331290 TTTGACTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 20 0.74
16 7 0.26
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTCATTTTTCAT
Found at i:24332155 original size:8 final size:8
Alignment explanation
Indices: 24332142--24332226 Score: 59
Period size: 9 Copynumber: 10.0 Consensus size: 8
24332132 TTTGACTTTG
24332142 ATTTTTTT
1 ATTTTTTT
24332150 A--TTTTT
1 ATTTTTTT
24332156 ATTTTTGTT
1 ATTTTT-TT
24332165 -TTTCTTTT
1 ATTT-TTTT
24332173 GATTTTTTGAT
1 -ATTTTTT--T
*
24332184 TTTTTTTT
1 ATTTTTTT
24332192 ATTTTTTTT
1 A-TTTTTTT
24332201 ATTTTTTT
1 ATTTTTTT
*
24332209 GATTTTTTGA
1 -ATTTTTT-T
24332219 ATTTTTTT
1 ATTTTTTT
24332227 GAGTCTGAAC
Statistics
Matches: 62, Mismatches: 4, Indels: 22
0.70 0.05 0.25
Matches are distributed among these distances:
6 6 0.10
8 17 0.27
9 29 0.47
10 9 0.15
11 1 0.02
ACGTcount: A:0.12, C:0.01, G:0.06, T:0.81
Consensus pattern (8 bp):
ATTTTTTT
Found at i:24332160 original size:5 final size:6
Alignment explanation
Indices: 24332145--24332206 Score: 52
Period size: 6 Copynumber: 9.8 Consensus size: 6
24332135 GACTTTGATT
* * * * *
24332145 TTTTTA TTTTTA TTTTTG TTTTTC TTTTGA TTTTTTGA TTTTTT TTTATTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTTT-A TTTTTA TTT-TTA
24332196 TTTTTA TTTTT
1 TTTTTA TTTTT
24332207 TTGATTTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
6 30 0.65
7 15 0.33
8 1 0.02
ACGTcount: A:0.10, C:0.02, G:0.05, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:24332179 original size:19 final size:18
Alignment explanation
Indices: 24332157--24332228 Score: 85
Period size: 18 Copynumber: 3.9 Consensus size: 18
24332147 TTTATTTTTA
24332157 TTTTTGTTTTTCTTTTGAT
1 TTTTTGTTTTT-TTTTGAT
24332176 TTTTTGATTTTTTTTT-AT
1 TTTTTG-TTTTTTTTTGAT
24332194 TTTTT-TTATTTTTTTGAT
1 TTTTTGTT-TTTTTTTGAT
**
24332212 TTTTTGAATTTTTTTGA
1 TTTTTGTTTTTTTTTGA
24332229 GTCTGAACTC
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
16 2 0.04
17 7 0.15
18 23 0.49
19 10 0.21
20 5 0.11
ACGTcount: A:0.11, C:0.01, G:0.08, T:0.79
Consensus pattern (18 bp):
TTTTTGTTTTTTTTTGAT
Found at i:24332209 original size:36 final size:36
Alignment explanation
Indices: 24332146--24332226 Score: 119
Period size: 36 Copynumber: 2.2 Consensus size: 36
24332136 ACTTTGATTT
24332146 TTTTATTTTTATTTTTGTTTTTCTTTTGATTTTTTGA
1 TTTT-TTTTTATTTTTGTTTTTCTTTTGATTTTTTGA
*
24332183 TTTTTTTTTATTTTT-TTTATTTTTTTGATTTTTTGA
1 TTTTTTTTTATTTTTGTTT-TTCTTTTGATTTTTTGA
*
24332219 ATTTTTTT
1 TTTTTTTT
24332227 GAGTCTGAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
35 3 0.07
36 34 0.83
37 4 0.10
ACGTcount: A:0.11, C:0.01, G:0.06, T:0.81
Consensus pattern (36 bp):
TTTTTTTTTATTTTTGTTTTTCTTTTGATTTTTTGA
Found at i:24332216 original size:18 final size:18
Alignment explanation
Indices: 24332138--24332228 Score: 79
Period size: 18 Copynumber: 5.3 Consensus size: 18
24332128 TATTTTTGAC
24332138 TTTGA-TTTTTTTA--TT
1 TTTGATTTTTTTTATTTT
*
24332153 TTT-ATTTTTGTTT-TTCT
1 TTTGATTTTT-TTTATTTT
24332170 TTTGATTTTTTGATT-TTTT
1 TTTGATTTTTT--TTATTTT
24332189 TTT-ATTTTTTTTATTTT
1 TTTGATTTTTTTTATTTT
**
24332206 TTTGATTTTTTGAATTTT
1 TTTGATTTTTTTTATTTT
24332224 TTTGA
1 TTTGA
24332229 GTCTGAACTC
Statistics
Matches: 63, Mismatches: 4, Indels: 15
0.77 0.05 0.18
Matches are distributed among these distances:
14 1 0.02
15 7 0.11
16 5 0.08
17 12 0.19
18 30 0.48
19 8 0.13
ACGTcount: A:0.12, C:0.01, G:0.08, T:0.79
Consensus pattern (18 bp):
TTTGATTTTTTTTATTTT
Found at i:24332962 original size:17 final size:18
Alignment explanation
Indices: 24332930--24332966 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
24332920 TCGGCACAGT
24332930 ATGATTATGAATGAAAGA
1 ATGATTATGAATGAAAGA
*
24332948 ATGATT-TGGATGAAAGA
1 ATGATTATGAATGAAAGA
24332965 AT
1 AT
24332967 AAAAGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.30
Consensus pattern (18 bp):
ATGATTATGAATGAAAGA
Found at i:24335564 original size:13 final size:13
Alignment explanation
Indices: 24335543--24335597 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
24335533 TTAAAGTTAG
*
24335543 ATTATTATATTAT
1 ATTAGTATATTAT
*
24335556 ATTAGTATATTTT
1 ATTAGTATATTAT
* *
24335569 ATTTATTATTTTA-
1 A-TTAGTATATTAT
24335582 ATTAG-ATATTAT
1 ATTAGTATATTAT
24335594 ATTA
1 ATTA
24335598 AGAAAGATGA
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
11 5 0.15
12 7 0.21
13 13 0.39
14 8 0.24
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (13 bp):
ATTAGTATATTAT
Found at i:24336742 original size:12 final size:11
Alignment explanation
Indices: 24336705--24336744 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
24336695 TTCACACATT
24336705 ATTTCT-TCAA
1 ATTTCTCTCAA
*
24336715 TTTTCTCTCAA
1 ATTTCTCTCAA
24336726 ATTTCTCTCTAA
1 ATTTCTCTC-AA
24336738 ATTTCTC
1 ATTTCTC
24336745 AAAGCTCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 5 0.19
11 12 0.46
12 9 0.35
ACGTcount: A:0.23, C:0.25, G:0.00, T:0.53
Consensus pattern (11 bp):
ATTTCTCTCAA
Found at i:24338534 original size:18 final size:18
Alignment explanation
Indices: 24338511--24338549 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
24338501 ATGTCAGGTG
*
24338511 TGTATCCTAGCCCTTATA
1 TGTATCCTAACCCTTATA
24338529 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
24338547 TGT
1 TGT
24338550 TTCCCTTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.26, G:0.10, T:0.41
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:24342265 original size:125 final size:125
Alignment explanation
Indices: 24342030--24342303 Score: 368
Period size: 125 Copynumber: 2.2 Consensus size: 125
24342020 TAAGACCAAA
* * * *
24342030 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGACCTTTTTTCAGTAATTTTGCTGACATTGC
1 CAGGAACTACTGTAGAAAAA-AACGTCCACGTGGAACCTTTTTTCAGTAATTTTACTGACAGTGC
* *
24342095 ATCCTGCTTGAAGCAATTTTGACACTATTTGTTCAAAATCATCTTCTTAAAAATATTTTTT
65 ATCCTGCTTGAAGCAATTTTGACACTATTTGTTCAAAACCATCTTCTCAAAAATATTTTTT
* * *
24342156 CAGGAACTACTGTAGAAAAAAACGTCTACGTGGAAGCTTTTTTCAGTAATTTTATTGACAGTGCA
1 CAGGAACTACTGTAGAAAAAAACGTCCACGTGGAACCTTTTTTCAGTAATTTTACTGACAGTGCA
** * * * * * * *
24342221 TCCTGCTTGAAGCGTTTTTTATATTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
66 TCCTGCTTGAAGCAATTTTGACACTATTTGTTCAAAACCATCTTCTCAAAAATATTTTTT
*
24342281 CAGAAACTACTGTAGAAAAAAAC
1 CAGGAACTACTGTAGAAAAAAAC
24342304 AAAAGTTTTT
Statistics
Matches: 129, Mismatches: 19, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
125 109 0.84
126 20 0.16
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36
Consensus pattern (125 bp):
CAGGAACTACTGTAGAAAAAAACGTCCACGTGGAACCTTTTTTCAGTAATTTTACTGACAGTGCA
TCCTGCTTGAAGCAATTTTGACACTATTTGTTCAAAACCATCTTCTCAAAAATATTTTTT
Found at i:24342416 original size:34 final size:31
Alignment explanation
Indices: 24342359--24342476 Score: 112
Period size: 34 Copynumber: 3.6 Consensus size: 31
24342349 CAAAATTATT
24342359 TTTTTTAAAAA-CTAAACCATAATTTAATTAA
1 TTTTTTAAAAACCTAAACC-TAATTTAATTAA
*
24342390 TTTTCTTAAAAACCTTAAACCTTAATTTAATTTA
1 TTTT-TTAAAAACC-TAAACC-TAATTTAATTAA
* * *
24342424 TTTATTTAAAATTCCAAAAACCTAATTTAATTTA
1 TTT-TTTAAAA-ACC-TAAACCTAATTTAATTAA
**
24342458 TTTTAAAAAAACCTAAACC
1 TTTTTTAAAAACCTAAACC
24342477 CTAAACCTAC
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
31 9 0.12
32 9 0.12
33 6 0.08
34 41 0.56
35 8 0.11
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTTTAAAAACCTAAACCTAATTTAATTAA
Found at i:24342510 original size:15 final size:15
Alignment explanation
Indices: 24342490--24342520 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
24342480 AACCTACCAA
24342490 AAACCAAAAAACCCT
1 AAACCAAAAAACCCT
24342505 AAACCAAAAAACCCT
1 AAACCAAAAAACCCT
24342520 A
1 A
24342521 GGGACTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.32, G:0.00, T:0.06
Consensus pattern (15 bp):
AAACCAAAAAACCCT
Found at i:24343743 original size:41 final size:41
Alignment explanation
Indices: 24343684--24343790 Score: 187
Period size: 41 Copynumber: 2.6 Consensus size: 41
24343674 TTGCCCCTAG
*
24343684 TGTTGCGACATCAAAAGCCAATGTCGCACACTAGAAGCCAA
1 TGTTGGGACATCAAAAGCCAATGTCGCACACTAGAAGCCAA
*
24343725 TGTTGGGACATCATAAGCCAATGTCGCACACTAGAAGCCAA
1 TGTTGGGACATCAAAAGCCAATGTCGCACACTAGAAGCCAA
*
24343766 TGTTGGGACATCAGAAGCCAATGTC
1 TGTTGGGACATCAAAAGCCAATGTC
24343791 ACAACATTAG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 63 1.00
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (41 bp):
TGTTGGGACATCAAAAGCCAATGTCGCACACTAGAAGCCAA
Found at i:24343744 original size:21 final size:21
Alignment explanation
Indices: 24343684--24343789 Score: 103
Period size: 21 Copynumber: 5.1 Consensus size: 21
24343674 TTGCCCCTAG
* *
24343684 TGTTGCGACATCAAAAGCCAA
1 TGTTGGGACATCAGAAGCCAA
* *
24343705 TG-TCGCACA-CTAGAAGCCAA
1 TGTTGGGACATC-AGAAGCCAA
*
24343725 TGTTGGGACATCATAAGCCAA
1 TGTTGGGACATCAGAAGCCAA
* *
24343746 TG-TCGCACA-CTAGAAGCCAA
1 TGTTGGGACATC-AGAAGCCAA
24343766 TGTTGGGACATCAGAAGCCAA
1 TGTTGGGACATCAGAAGCCAA
24343787 TGT
1 TGT
24343790 CACAACATTA
Statistics
Matches: 67, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
19 2 0.03
20 29 0.43
21 34 0.51
22 2 0.03
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.20
Consensus pattern (21 bp):
TGTTGGGACATCAGAAGCCAA
Found at i:24344710 original size:23 final size:23
Alignment explanation
Indices: 24344657--24344729 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 23
24344647 GAAGTGCTAG
* ** *
24344657 AATGAATTGCACCGTAGTACCAG
1 AATGAATTGCACCGAAGTGTCAA
* *
24344680 AATAAATTGCACCAAAGTGTCAA
1 AATGAATTGCACCGAAGTGTCAA
**
24344703 AATGAATTGCATTGAAGTGTCAA
1 AATGAATTGCACCGAAGTGTCAA
24344726 AATG
1 AATG
24344730 CTCCCACCAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.25
Consensus pattern (23 bp):
AATGAATTGCACCGAAGTGTCAA
Found at i:24349655 original size:94 final size:94
Alignment explanation
Indices: 24349544--24349729 Score: 354
Period size: 94 Copynumber: 2.0 Consensus size: 94
24349534 TAATCAAGTC
*
24349544 AATTTGACTTTTCATATGTAAAAGGAGTTTAGTGGTCTAAAAAGAAAAACAAATGAAGCATTATG
1 AATTTGACTTTTCATATGTAAAAGGAGTTTAGTGGTCCAAAAAGAAAAACAAATGAAGCATTATG
24349609 GGCTTGACCAATTTGCATCCTTCAATGAT
66 GGCTTGACCAATTTGCATCCTTCAATGAT
24349638 AATTTGACTTTTCATATGTAAAAGGAGTTTAGTGGTCCAAAAAGAAAAACAAATGAAGCATTATG
1 AATTTGACTTTTCATATGTAAAAGGAGTTTAGTGGTCCAAAAAGAAAAACAAATGAAGCATTATG
*
24349703 GGCTTGACCAATTTGCATCCTTTAATG
66 GGCTTGACCAATTTGCATCCTTCAATG
24349730 CTTTCTCCAC
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 90 1.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (94 bp):
AATTTGACTTTTCATATGTAAAAGGAGTTTAGTGGTCCAAAAAGAAAAACAAATGAAGCATTATG
GGCTTGACCAATTTGCATCCTTCAATGAT
Found at i:24355343 original size:21 final size:21
Alignment explanation
Indices: 24355315--24355358 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
24355305 TTTTAGTTTT
24355315 ATTTT-AT-TTTGTTTT-TCC
1 ATTTTCATATTTGTTTTCTCC
*
24355333 ATTTTCATATTTGTTTTCTCT
1 ATTTTCATATTTGTTTTCTCC
24355354 ATTTT
1 ATTTT
24355359 ATGTTTCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 5 0.23
19 2 0.09
20 8 0.36
21 7 0.32
ACGTcount: A:0.14, C:0.11, G:0.05, T:0.70
Consensus pattern (21 bp):
ATTTTCATATTTGTTTTCTCC
Found at i:24358181 original size:19 final size:20
Alignment explanation
Indices: 24358127--24358184 Score: 75
Period size: 19 Copynumber: 3.0 Consensus size: 20
24358117 ATGTCACATC
*
24358127 AAAAATAATTTAAAAACTAT
1 AAAAATAATTTAAAAAATAT
* *
24358147 AAAAAT-ATTCAGAAAATA-
1 AAAAATAATTTAAAAAATAT
24358165 AAAAATAATTTAAAAAATAT
1 AAAAATAATTTAAAAAATAT
24358185 TTTAAAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
18 6 0.19
19 19 0.61
20 6 0.19
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (20 bp):
AAAAATAATTTAAAAAATAT
Found at i:24358195 original size:13 final size:12
Alignment explanation
Indices: 24358163--24358193 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
24358153 ATTCAGAAAA
*
24358163 TAAAAAATAATT
1 TAAAAAATATTT
24358175 TAAAAAATATTT
1 TAAAAAATATTT
24358187 TAAAAAA
1 TAAAAAA
24358194 ATGATTTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
TAAAAAATATTT
Found at i:24373624 original size:31 final size:29
Alignment explanation
Indices: 24373554--24373634 Score: 81
Period size: 31 Copynumber: 2.7 Consensus size: 29
24373544 GAATTAGATC
***
24373554 AAATTAAAATTTAATATATAAAATTGTACA
1 AAATTAAAATTT-ATATATAAAATAACACA
*
24373584 AAATCAAAATTTATATATAAAATAACACA
1 AAATTAAAATTTATATATAAAATAACACA
* *
24373613 TTAAATTAAAATTAATGTATAA
1 --AAATTAAAATTTATATATAA
24373635 TTTTAAGATT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 14 0.33
30 11 0.26
31 17 0.40
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (29 bp):
AAATTAAAATTTATATATAAAATAACACA
Found at i:24374413 original size:98 final size:98
Alignment explanation
Indices: 24374242--24374438 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
24374232 GTACAATAAA
*
24374242 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
24374307 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
* *
24374340 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCATAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
24374405 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
24374438 A
1 A
24374439 TTATTTTTAA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:24375139 original size:25 final size:26
Alignment explanation
Indices: 24375109--24375158 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24375099 ATATAAATAT
24375109 GAAAATATTC-ATTAAAAAAATATAG
1 GAAAATATTCGATTAAAAAAATATAG
*
24375134 GAAAATATTCGTTTAAAAAAATATA
1 GAAAATATTCGATTAAAAAAATATA
24375159 CATGTACATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.58, C:0.04, G:0.08, T:0.30
Consensus pattern (26 bp):
GAAAATATTCGATTAAAAAAATATAG
Found at i:24375937 original size:21 final size:19
Alignment explanation
Indices: 24375902--24375974 Score: 110
Period size: 19 Copynumber: 3.7 Consensus size: 19
24375892 TCATATATTT
24375902 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
24375921 TAAGATTGCATATATCATATC
1 TAAGATTGC--ATATCATATC
*
24375942 TAAGATTTCATATCATATC
1 TAAGATTGCATATCATATC
*
24375961 GAAGATTGCATATC
1 TAAGATTGCATATC
24375975 CTCAAAAATT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 31 0.63
21 18 0.37
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:24376416 original size:128 final size:128
Alignment explanation
Indices: 24376273--24376559 Score: 475
Period size: 128 Copynumber: 2.2 Consensus size: 128
24376263 ACTTCCTTAG
* *
24376273 TCTGCTTCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTATCTGCAACTTCAGAGAG
* * *
24376338 ATAAGATCTGTGATTTTAATCCGCTCTACTGCAACGTCAAGGAGATAGGATTATCGGCTTTAA
66 ATAAGATCTGTAATTTAAATCCGCTCTACTGCAACGTCAAGGAGATAGGATTATCAGCTTTAA
* *
24376401 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTATCTGTAAGTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTATCTGCAACTTCAGAGAG
* * *
24376466 ATAAGATCTGTAATTTAAATCCGCTCTACTGCAACTTCAGGGAGATAGGATTGTCAGCTTTAA
66 ATAAGATCTGTAATTTAAATCCGCTCTACTGCAACGTCAAGGAGATAGGATTATCAGCTTTAA
*
24376529 TCTGCTCCACTGCAACTTCAGGAAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
24376560 TTTGTCATCT
Statistics
Matches: 148, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
128 148 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (128 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTATCTGCAACTTCAGAGAG
ATAAGATCTGTAATTTAAATCCGCTCTACTGCAACGTCAAGGAGATAGGATTATCAGCTTTAA
Found at i:24376717 original size:44 final size:43
Alignment explanation
Indices: 24376182--24376778 Score: 247
Period size: 44 Copynumber: 13.8 Consensus size: 43
24376172 TTAGTGCTTC
* * *
24376182 AATCTACTCCACTGCAACTTTAGGGAGATAAGA-CT-TGCCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCTGTG--AT-TTT
*
24376227 AGTCTGC-CTCACTGCAACTTCAGGAGGATAAGA-CT-T-ACTTCCTT
1 AATCTGCTC-CACTGCAACTTCAGG-GGATAAGATCTGTGA-TT--TT
* * * **
24376271 AGTCTGCTTCACTGCAACTTCAGGGAGATAAGA-CT-AGA-TGC
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCTGTGATTTT
* * *
24376312 GATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGTGATTTT
1 AATCTGCTCCACTGCAACTTCAG-GGGATAAGATCTGTGATTTT
* * * * * * **
24376355 AATCCGCTCTACTGCAACGTCAAGGAGATAGGAT-TATCGGCTTT
1 AATCTGCTCCACTGCAACTTC-AGGGGATAAGATCTGT-GATTTT
* **
24376399 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-AGA-TGC
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCTGTGATTTT
* * * * * *
24376440 GATCTGCT--ATCTGTAAGTTCAGAGAGATAAGATCTGTAATTTA
1 AATCTGCTCCA-CTGCAACTTCAG-GGGATAAGATCTGTGATTTT
* * * * *
24376483 AATCCGCTCTACTGCAACTTCAGGGAGATAGGAT-TGTCAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCTGTGA-TTTT
* * * *
24376527 AATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGTCATCTTC
1 AATCTGCTCCACTGCAACTTCAGG-GGATAAGATCTGTGAT-TTT
* * * * *
24376572 AGTCTGC-CTCACTGTAACTTTAGAAGGATAAGA-CT-TGCTTACTT
1 AATCTGCTC-CACTGCAACTTCAG-GGGATAAGATCTGTGATT--TT
* * **
24376616 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-AGA-TGC
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCTGTGATTTT
* *
24376657 GATCTGCT-CTCTGCAACTTCAGAGGGATAAGATCTGTGATTTT
1 AATCTGCTCCACTGCAACTTCAG-GGGATAAGATCTGTGATTTT
* * * *
24376700 AATCCGCTCCACTGCAACTTCAGGAAGATAGGAT-TGTCGACTTT
1 AATCTGCTCCACTGCAACTTCAGG-GGATAAGATCTGT-GATTTT
* **
24376744 AATCTGCTCCACTACTGCTT-AGGGAGATAAGATCT
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCT
24376779 ACAATCTTCA
Statistics
Matches: 418, Mismatches: 90, Indels: 89
0.70 0.15 0.15
Matches are distributed among these distances:
39 1 0.00
40 57 0.14
41 30 0.07
42 9 0.02
43 52 0.12
44 202 0.48
45 66 0.16
46 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGGATAAGATCTGTGATTTT
Found at i:24376882 original size:132 final size:132
Alignment explanation
Indices: 24376745--24377710 Score: 1662
Period size: 132 Copynumber: 7.3 Consensus size: 132
24376735 GTCGACTTTA
* * *
24376745 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAG
* * * * * *
24376810 GGAAACAAGGCTTAGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGTCGTTTT
66 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTT
24376875 CG
131 CG
24376877 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAG
* *
24376942 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAATATAAGATTCACCGTCTT
66 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTT
24377007 CG
131 CG
24377009 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAG
* * *
24377074 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCTACTATCTTAGAAAGATAAGATTCGTCGTCTT
66 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTT
24377139 CG
131 CG
* *
24377141 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACATTCTCCGCTGCTGCTCAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAG
*
24377206 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAATATAAGATTCGCCGTCTT
66 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTT
24377271 CG
131 CG
* *
24377273 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAACCTTCTCCGCTGCTGTTCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAG
* * *
24377338 GGAGACAAGACTTGGCGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTT
66 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTT
24377403 CG
131 CG
*
24377405 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAG
*
24377470 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCTCACTATCTTGGAAAGATAAGATTCGCCGTCTT
66 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTT
24377535 CG
131 CG
* *
24377537 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAG
* *
24377602 GGAGACGAGGCTTGGTGGCTTAAATCTGCTTCCTACTATCTTGGAAAGATAAGATTCGCCGTCTT
66 GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTT
24377667 CG
131 CG
* *
24377669 ATCTGCTCCACTACTGTTTAGGGAGATAAGATCTATAATTTT
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTT
24377711 TATTGATCTG
Statistics
Matches: 790, Mismatches: 44, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 790 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (132 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAG
GGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTT
CG
Found at i:24376905 original size:44 final size:44
Alignment explanation
Indices: 24376725--24377700 Score: 224
Period size: 44 Copynumber: 22.2 Consensus size: 44
24376715 AACTTCAGGA
* * *
24376725 AGATAGGA-TTGTCGACTTTAATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * *
24376768 AGATAAGATCT-ACAATCTTCAACCTACTCCACTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * * *
24376812 AAACAAGGCTTAGT-GGCTTAAATCTACTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
24376856 AGATAAGATTTGTCGTTTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * *
24376900 AGATAAGATCT-ACAATTTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
24376944 AGACAAGGCTTGGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *** *
24376988 ATATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * *
24377032 AGATAAGATCT-ACAATTTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * **
24377076 AGACAAGGCTTGGT-GGCTTAAATCTGCTTCCTACTA-T-CTTAGAA
1 AGATAA-GATTTGTCGTCTTCAATCTGC-TCC-ACTACTGCTTAGGG
* *
24377120 AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * *
24377164 AGATAAGATCT-ACAATTTTCAA-CATTCTCCGCTGCTGCTCAAGG
1 AGATAAGATTTGTC-GTCTTCAATC-TGCTCCACTACTGCTTAGGG
* * * * * *
24377208 AGACAAGGCTTGGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * * *
24377252 ATATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * *
24377296 AGATAAGATCTATAATTTTCAACCTTCTCCGCTGCTG-TTCAGGG
1 AGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTT-AGGG
* * * * * *
24377340 AGACAAGACTTGGCGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGTCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
24377384 AGATAAGATTCG-CTGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTC-GTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * * *
24377428 AGATAAGATCT-ACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
24377472 AGACAAGGCTTGGT-GGCTTAAATCTGCTTCTCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTCAATCTGC-TC-CACTACTGCTTAGG-G
* * *
24377516 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * *
24377560 AGATAAGATCT-ACAATCTTCAACCTTCTCCACTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * *
24377604 AGACGAGGCTTGGT-GGCTTAAATCTGCTTCCTACTA-T-CTT-GGAA
1 AGA-TAAGATTTGTCGTCTTCAATCTGC-TCC-ACTACTGCTTAGG-G
* * * *
24377648 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGTTTAGGG
1 AGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
24377692 AGATAAGAT
1 AGATAAGAT
24377701 CTATAATTTT
Statistics
Matches: 625, Mismatches: 238, Indels: 139
0.62 0.24 0.14
Matches are distributed among these distances:
42 37 0.06
43 72 0.12
44 444 0.71
45 47 0.08
46 25 0.04
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
AGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:24378948 original size:21 final size:21
Alignment explanation
Indices: 24378919--24378964 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
24378909 TGGCCTCTCC
*
24378919 TTTTACTTTTTCTTTTTTC-CT
1 TTTTAC-TTTTCTTTTTCCTCT
*
24378940 TTTTCCTTTTCTTTTTCCTCT
1 TTTTACTTTTCTTTTTCCTCT
24378961 TTTT
1 TTTT
24378965 TTTGAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTACTTTTCTTTTTCCTCT
Found at i:24378953 original size:12 final size:13
Alignment explanation
Indices: 24378916--24378958 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 13
24378906 CCTTGGCCTC
24378916 TCCTTTTACTTTT
1 TCCTTTTACTTTT
* *
24378929 TCTTTTTTCCTTTT
1 TC-CTTTTACTTTT
24378943 TCCTTTT-CTTTT
1 TCCTTTTACTTTT
24378955 TCCT
1 TCCT
24378959 CTTTTTTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 9 0.35
13 6 0.23
14 11 0.42
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (13 bp):
TCCTTTTACTTTT
Found at i:24378962 original size:14 final size:14
Alignment explanation
Indices: 24378918--24378963 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
24378908 TTGGCCTCTC
24378918 CTTTTACTTTTTCT
1 CTTTTACTTTTTCT
* *
24378932 TTTTTCCTTTTTC-
1 CTTTTACTTTTTCT
24378945 CTTTT-CTTTTTCCT
1 CTTTTACTTTTT-CT
24378959 CTTTT
1 CTTTT
24378964 TTTTGAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 6 0.22
13 5 0.19
14 16 0.59
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (14 bp):
CTTTTACTTTTTCT
Found at i:24378963 original size:20 final size:20
Alignment explanation
Indices: 24378916--24378955 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
24378906 CCTTGGCCTC
* *
24378916 TCCTTTTACTTTTTCTTTTT
1 TCCTTTTTCCTTTTCTTTTT
24378936 TCCTTTTTCCTTTTCTTTTT
1 TCCTTTTTCCTTTTCTTTTT
24378956 CCTCTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.75
Consensus pattern (20 bp):
TCCTTTTTCCTTTTCTTTTT
Found at i:24378966 original size:12 final size:12
Alignment explanation
Indices: 24378916--24378967 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
24378906 CCTTGGCCTC
24378916 TCCTTTTACTTTT
1 TCCTTTT-CTTTT
*
24378929 TCTTTTTTCCTTTT
1 TC-CTTTT-CTTTT
24378943 TCCTTTTCTTTT
1 TCCTTTTCTTTT
24378955 TCCTCTTT-TTTT
1 TCCT-TTTCTTTT
24378967 T
1 T
24378968 GAAATATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
12 14 0.41
13 9 0.26
14 11 0.32
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (12 bp):
TCCTTTTCTTTT
Found at i:24383231 original size:98 final size:98
Alignment explanation
Indices: 24383057--24383253 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
24383047 GTACAATAAA
*
24383057 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
24383122 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
*
24383155 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
24383220 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
24383253 A
1 A
24383254 TTATTTTTTT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:24383950 original size:24 final size:26
Alignment explanation
Indices: 24383913--24383969 Score: 75
Period size: 24 Copynumber: 2.3 Consensus size: 26
24383903 ATATATACAT
*
24383913 ATAA-ATATGAAAATATTC-ATTAAA
1 ATAATATAGGAAAATATTCGATTAAA
*
24383937 A-AATATAGGAAAATATTCGTTTAAA
1 ATAATATAGGAAAATATTCGATTAAA
24383962 ATAATATA
1 ATAATATA
24383970 CATGTACATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 2 0.07
24 14 0.50
25 6 0.21
26 6 0.21
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (26 bp):
ATAATATAGGAAAATATTCGATTAAA
Found at i:24384398 original size:13 final size:13
Alignment explanation
Indices: 24384380--24384405 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24384370 AATAAAAGGG
24384380 TAAAAAATAAAAA
1 TAAAAAATAAAAA
24384393 TAAAAAATAAAAA
1 TAAAAAATAAAAA
24384406 ACTTAATTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:24384781 original size:21 final size:21
Alignment explanation
Indices: 24384729--24384799 Score: 105
Period size: 19 Copynumber: 3.6 Consensus size: 21
24384719 TCATATATTT
24384729 TAAGATTGC--ATATCATATC
1 TAAGATTGCATATATCATATC
24384748 TAAGATT--ATATATCATATC
1 TAAGATTGCATATATCATATC
24384767 TAAGATTGCATATATCATATC
1 TAAGATTGCATATATCATATC
*
24384788 TAAGATTACATA
1 TAAGATTGCATA
24384800 CCCTCAAAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
19 24 0.51
21 23 0.49
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (21 bp):
TAAGATTGCATATATCATATC
Found at i:24391410 original size:3 final size:3
Alignment explanation
Indices: 24391402--24391430 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
24391392 TCTATCTACT
24391402 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
24391431 TAATCTTGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:24404012 original size:11 final size:11
Alignment explanation
Indices: 24403996--24404022 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
24403986 TAGAAATTAG
24403996 TTTGTGAAACT
1 TTTGTGAAACT
24404007 TTTGTGAAACT
1 TTTGTGAAACT
24404018 TTTGT
1 TTTGT
24404023 ATTTATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:24405558 original size:92 final size:92
Alignment explanation
Indices: 24405422--24405615 Score: 286
Period size: 92 Copynumber: 2.1 Consensus size: 92
24405412 TTGATTTTAG
* *
24405422 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
*
24405486 TAT-TAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
24405513 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
24405578 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
24405606 CAAATTCATA
1 TAAATTCATA
24405616 AACTATAATC
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 17 0.18
92 43 0.46
93 30 0.32
94 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:24405663 original size:48 final size:52
Alignment explanation
Indices: 24405593--24405691 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
24405583 AATAATTATT
24405593 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
24405641 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
24405692 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:24405673 original size:17 final size:17
Alignment explanation
Indices: 24405648--24405681 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24405638 ATAATTTTAA
*
24405648 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
24405665 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
24405682 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:24405698 original size:17 final size:16
Alignment explanation
Indices: 24405653--24405700 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
24405643 TTTAAATTTT
24405653 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
24405670 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
24405684 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
24405701 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:24405788 original size:16 final size:17
Alignment explanation
Indices: 24405750--24405789 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
24405740 AATTTTATTA
24405750 AATAA-TATATTTTAAT
1 AATAATTATATTTTAAT
*
24405766 TAT-ATTATA-TTTAAT
1 AATAATTATATTTTAAT
24405781 AATAATTAT
1 AATAATTAT
24405790 GTTATTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
AATAATTATATTTTAAT
Found at i:24405894 original size:18 final size:17
Alignment explanation
Indices: 24405866--24405900 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24405856 ATTATTAAGA
*
24405866 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24405883 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24405901 TTATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24405900 original size:16 final size:17
Alignment explanation
Indices: 24405866--24405907 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
24405856 ATTATTAAGA
24405866 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA-TATAT
24405883 ATTTTAATTAAA-ATAT
1 ATTTTAATTAAATATAT
24405899 ATTTATAAT
1 ATTT-TAAT
24405908 AATTATGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 9 0.39
18 6 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:24406009 original size:143 final size:147
Alignment explanation
Indices: 24405854--24406124 Score: 478
Period size: 143 Copynumber: 1.9 Consensus size: 147
24405844 ATAAGAATAT
*
24405854 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATT-TATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
24405918 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
24405980 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
24405997 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
24406062 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
24406125 CAATAATCAT
Statistics
Matches: 120, Mismatches: 2, Indels: 6
0.94 0.02 0.05
Matches are distributed among these distances:
143 48 0.40
144 42 0.35
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:24406037 original size:18 final size:17
Alignment explanation
Indices: 24406009--24406043 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24405999 ATTATTAAGA
*
24406009 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24406026 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24406044 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24406254 original size:44 final size:45
Alignment explanation
Indices: 24406205--24406299 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
24406195 TTACACCTCT
* *
24406205 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
24406249 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
24406294 ATTACA
1 ATTACA
24406300 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:24406299 original size:16 final size:16
Alignment explanation
Indices: 24406278--24406310 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24406268 TTGATTTGCT
*
24406278 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
24406294 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
24406310 A
1 A
24406311 ATCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:24406320 original size:21 final size:21
Alignment explanation
Indices: 24406291--24406333 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
24406281 ACACCTCTAT
* *
24406291 TCCATTACACCTCTAATCCAA
1 TCCAATACACCGCTAATCCAA
24406312 TCCAATACACCGCTAATCCAA
1 TCCAATACACCGCTAATCCAA
24406333 T
1 T
24406334 ACAGCGAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.37, G:0.02, T:0.26
Consensus pattern (21 bp):
TCCAATACACCGCTAATCCAA
Found at i:24412504 original size:30 final size:27
Alignment explanation
Indices: 24412468--24412541 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 27
24412458 AACAGAAAGG
*
24412468 GACCAAAAAAAACATATCGATTAGTTGGGT
1 GACCAAAAAAAA-A-ATCGA-TACTTGGGT
*
24412498 GACCAAATTAAAAAAATTGATACTTGGGT
1 GACCAAA--AAAAAAATCGATACTTGGGT
24412527 GACCAAAAAAGAAAA
1 GACCAAAAAA-AAAA
24412542 AAGACACTAG
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
27 3 0.08
28 4 0.10
29 15 0.38
30 11 0.28
31 1 0.03
32 5 0.13
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.20
Consensus pattern (27 bp):
GACCAAAAAAAAAATCGATACTTGGGT
Found at i:24417893 original size:4 final size:4
Alignment explanation
Indices: 24417877--24417907 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
24417867 TAAAAATTTA
*
24417877 AAAT AAGT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
24417908 AATAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:24419319 original size:23 final size:22
Alignment explanation
Indices: 24419267--24419319 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
24419257 TCCACGTCTT
*
24419267 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
24419289 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
24419312 TTTCTTTT
1 TTTCTTTT
24419320 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:24431863 original size:9 final size:9
Alignment explanation
Indices: 24431849--24431883 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
24431839 GATTGCAAAA
24431849 AGGACGATG
1 AGGACGATG
24431858 AGGACGATG
1 AGGACGATG
* *
24431867 AGCACAATG
1 AGGACGATG
24431876 AGGACGAT
1 AGGACGAT
24431884 AAGAATGATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.37, C:0.14, G:0.37, T:0.11
Consensus pattern (9 bp):
AGGACGATG
Found at i:24432018 original size:16 final size:16
Alignment explanation
Indices: 24431997--24432032 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
24431987 TTTGGTTCGC
24431997 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
24432013 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
24432029 TGTA
1 TGTA
24432033 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:24432287 original size:18 final size:17
Alignment explanation
Indices: 24432266--24432300 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24432256 TTATTATTAA
*
24432266 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
24432284 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
24432301 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:24432433 original size:151 final size:151
Alignment explanation
Indices: 24432182--24432463 Score: 528
Period size: 151 Copynumber: 1.9 Consensus size: 151
24432172 GTAAATGATT
* *
24432182 ATTATTATTGTTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATTTTAATCATATT
1 ATTATTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATT
* *
24432247 TTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATT
66 TAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
24432312 AGCAGAAATTTGTTTTGGTAA
131 AGCAGAAATTTGTTTTGGTAA
24432333 ATTATTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATT
1 ATTATTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATT
24432398 TAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
66 TAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
24432463 A
131 A
24432464 ATTATTCTTA
Statistics
Matches: 127, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 127 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (151 bp):
ATTATTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATT
TAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
AGCAGAAATTTGTTTTGGTAA
Found at i:24432434 original size:16 final size:16
Alignment explanation
Indices: 24432397--24432438 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
24432387 TTAATCATAT
*
24432397 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
24432413 TT-AAATATATTATAA
1 TTAAAATATATTATAA
24432428 TTAAAATATAT
1 TTAAAATATAT
24432439 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:24432445 original size:14 final size:15
Alignment explanation
Indices: 24432406--24432447 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
24432396 TTTAAACATA
*
24432406 ATTATTATTAAATAT
1 ATTATAATTAAATAT
24432421 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
24432435 A-TATAATTTAATA
1 ATTATAATTAAATA
24432448 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:24432446 original size:76 final size:76
Alignment explanation
Indices: 24432219--24432447 Score: 184
Period size: 76 Copynumber: 3.0 Consensus size: 76
24432209 AGATTATTAT
* *
24432219 TATCAATAATAAATATTTTAATCATATTTTAACATAATTATTATTAAATATATTTTAATTAAAAT
1 TATCAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATATTATAATTAAAAT
24432284 ATATAATTTAA
66 ATATAATTTAA
* ** * * * **** **
24432295 TA-AAATTCTTAATAA-TTAGCA-GAAATTTGTTTTGGTAAATTATTATT-GTTAT-TTA-AATT
1 TATCAATAATAAATAATTTA--ATCATA-TT-TTAACAT-AATTATTATTAAATATATTATAATT
** * *
24432354 TTAATA-AGATTATTAA
61 AAAATATATAAT-TTAA
*
24432370 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
1 TATCAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATATTATAATTAAAAT
24432435 ATATAATTTAA
66 ATATAATTTAA
24432446 TA
1 TA
24432448 AAATTCTTAA
Statistics
Matches: 105, Mismatches: 35, Indels: 26
0.63 0.21 0.16
Matches are distributed among these distances:
73 10 0.10
74 11 0.10
75 30 0.29
76 32 0.30
77 12 0.11
78 10 0.10
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (76 bp):
TATCAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATATTATAATTAAAAT
ATATAATTTAA
Found at i:24432534 original size:121 final size:121
Alignment explanation
Indices: 24432395--24432693 Score: 480
Period size: 120 Copynumber: 2.5 Consensus size: 121
24432385 ATTTAATCAT
*
24432395 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
24432460 ATTAATTATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAAT-ATAA
66 ATTAA-TATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AA
*
24432518 A-TT-AACATAATTATTATTAAATATATTGTAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
24432581 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
* * * *
24432637 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAGATATATGATTTAATAAAATT
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
24432694 TAAAATAATT
Statistics
Matches: 167, Mismatches: 6, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
119 7 0.04
120 91 0.54
121 66 0.40
122 2 0.01
123 1 0.01
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
Found at i:24432780 original size:24 final size:25
Alignment explanation
Indices: 24432734--24432781 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
24432724 TATAAATTTG
*
24432734 TATAATTTAAAATAATAATTATTACA
1 TATAATTT-AAATAATAAGTATTACA
*
24432760 TATAATTT-AATAATTAGTATTA
1 TATAATTTAAATAATAAGTATTA
24432782 AATTTCATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 12 0.60
26 8 0.40
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (25 bp):
TATAATTTAAATAATAAGTATTACA
Found at i:24432785 original size:92 final size:92
Alignment explanation
Indices: 24432689--24432898 Score: 223
Period size: 92 Copynumber: 2.3 Consensus size: 92
24432679 TGATTTAATA
* * *
24432689 AAATTT-AAAATAATT-ATAACTAATAAATTATATTTTATAAATTTGTATAATTTAAAATAA-TA
1 AAATTTCAAAA-AATTCATAA-TAATAAATTATATTATATAAATTTATACAATTTAAAATAATTA
*
24432751 ATTATTACATATAATTTAATAATTAGTATT
64 A-TATTAAATATAATTTAATAATTAGTATT
* * * * * *
24432781 AAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAAT
1 AAATTTCAAAAAATTCATAATAATAAATTATATTATATAAATTTATACAATTTAAAATAATTAAT
* *
24432846 ATTAAATATAATTTAATAGTGA-TA-T
66 ATTAAATATAATTTAATAATTAGTATT
* *
24432871 ATAATTTCATAAAATTCTTAATAATAAA
1 A-AATTTCAAAAAATTCATAATAATAAA
24432899 ATGTTCTTAT
Statistics
Matches: 101, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
90 2 0.02
91 27 0.27
92 64 0.63
93 8 0.08
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (92 bp):
AAATTTCAAAAAATTCATAATAATAAATTATATTATATAAATTTATACAATTTAAAATAATTAAT
ATTAAATATAATTTAATAATTAGTATT
Found at i:24432906 original size:92 final size:92
Alignment explanation
Indices: 24432728--24432917 Score: 269
Period size: 92 Copynumber: 2.1 Consensus size: 92
24432718 ATATTTTATA
* * * *
24432728 AATTTGTATAATTTAAAATAATAATTATTACATATAATTTAATAATTAGTATTAAATTTCATAAA
1 AATTTATACAATTTAAAATAATAATTATTAAATATAATTTAATAATGAGTATTAAATTTCATAAA
* *
24432793 ATTCTTGATAATAAATTTTCTTATATG
66 ATTCTTAATAATAAATGTTCTTATATG
*
24432820 AATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATAGTGA-TA-TATAATTTCATA
1 AATTTATACAATTTAAAATAA-TAATTATTAAATATAATTTAATAATGAGTATTA-AATTTCATA
24432882 AAATTCTTAATAATAAAATGTTCTTATATG
64 AAATTCTTAATAAT-AAATGTTCTTATATG
24432912 AATTTA
1 AATTTA
24432918 CTAAAATCAA
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
90 2 0.02
91 24 0.27
92 59 0.67
93 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
AATTTATACAATTTAAAATAATAATTATTAAATATAATTTAATAATGAGTATTAAATTTCATAAA
ATTCTTAATAATAAATGTTCTTATATG
Found at i:24435434 original size:46 final size:45
Alignment explanation
Indices: 24435409--24435670 Score: 210
Period size: 46 Copynumber: 5.4 Consensus size: 45
24435399 GATCAAGTGA
* * *
24435409 CAAGTGGA-AAGTGATAAGTAATAGCT-TCGGCTATACTTATCTGAT
1 CAAGT-GACAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGAT
* *
24435454 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGAT
1 CAAGTGAC-AAGTGATAAGTGATAGCTATAGCTACACTTATCTGAT
*
24435500 CAAGTGACAAGTGGA-AAGTGATAAG-TAATAGCTTCGGCTATACTTATCTGAT
1 CAAGTGACAAGT-GATAAGTGAT-AGCT-ATA------GCTACACTTATCTGAT
*
24435552 CAAGTGACAAAGTGATAAGTGATAGCT-TCGGCTACACTTATCTGAT
1 CAAGTGAC-AAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGAT
*
24435598 CAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGAT
1 CAAGTGAC-------AAGTGATAAGTGATAGCTATAGCTACACTTATCTGAT
*
24435650 CAAGAGACAAAGTGATAAGTG
1 CAAGTGAC-AAGTGATAAGTG
24435671 GCTACACTTA
Statistics
Matches: 183, Mismatches: 11, Indels: 45
0.77 0.05 0.19
Matches are distributed among these distances:
44 2 0.01
45 16 0.09
46 81 0.44
47 1 0.01
51 1 0.01
52 69 0.38
53 13 0.07
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (45 bp):
CAAGTGACAAGTGATAAGTGATAGCTATAGCTACACTTATCTGAT
Found at i:24435435 original size:52 final size:51
Alignment explanation
Indices: 24435364--24435670 Score: 382
Period size: 52 Copynumber: 6.1 Consensus size: 51
24435354 ATCAAGTGAC
* *
24435364 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-G
* * *
24435416 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
24435462 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-G
* * *
24435514 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
24435560 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
24435611 AAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTG
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGTG
24435664 ATAAGTG
1 A-AAGTG
24435671 GCTACACTTA
Statistics
Matches: 221, Mismatches: 20, Indels: 27
0.82 0.07 0.10
Matches are distributed among these distances:
46 85 0.38
52 126 0.57
53 10 0.05
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
Found at i:24435470 original size:98 final size:98
Alignment explanation
Indices: 24435350--24435671 Score: 563
Period size: 98 Copynumber: 3.3 Consensus size: 98
24435340 TTTGAGTACT
24435350 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
24435415 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
24435448 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
24435513 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* **
24435546 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
* * ** *
24435611 AAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
*
24435644 TCTGATCAAGAGACAAAGTGATAAGTGG
1 TCTGATCAAGTGACAAAGTGATAAGTGG
24435672 CTACACTTAT
Statistics
Matches: 214, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 214 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Done.