Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 71 of 208
Found at i:26022620 original size:41 final size:41
Alignment explanation
Indices: 26022558--26022667 Score: 175
Period size: 41 Copynumber: 2.7 Consensus size: 41
26022548 ATTTAACATC
* *
26022558 TTCAGATCACCAGCACTTAGCCTGCTAGGTTTATAACCTGA
1 TTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGA
* * *
26022599 TTCATATCACCGGCACTTAGCCTACTAGGCTTATAGCCTGA
1 TTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGA
26022640 TTCAGATCACCGGCACTTAGCCTGCTAG
1 TTCAGATCACCGGCACTTAGCCTGCTAG
26022668 ACGTAAAGTC
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (41 bp):
TTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGA
Found at i:26022691 original size:41 final size:41
Alignment explanation
Indices: 26022658--26022763 Score: 212
Period size: 41 Copynumber: 2.6 Consensus size: 41
26022648 ACCGGCACTT
26022658 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
26022699 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
26022740 AGCCTGCTAGACGTAAAGTCTGAA
1 AGCCTGCTAGACGTAAAGTCTGAA
26022764 TTATCTCATT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 65 1.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
Found at i:26022695 original size:82 final size:82
Alignment explanation
Indices: 26022558--26022763 Score: 193
Period size: 82 Copynumber: 2.5 Consensus size: 82
26022548 ATTTAACATC
* *** * ** *
26022558 TTCAGATCACCAGCACTTAGCCTGCTAGGTTTATAA-CCTGATTCATATCACCGGCA-CTTAGCC
1 TTCAGATCACCGGCACTTAGCCTGCTAGACGTA-AAGTCTGAAACATATCACCGGCATC-AAGCC
* * *
26022621 TACTAGGCTTATAGCCTGA
64 TACTAGACGTAAAGCCTGA
* *
26022640 TTCAGATCACCGGCACTTAGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCAAGCCTG
1 TTCAGATCACCGGCACTTAGCCTGCTAGACGTAAAGTCTGAAACATATCACCGGCATCAAGCCTA
*
26022705 CTAGACGTAAAGTCTGA
66 CTAGACGTAAAGCCTGA
** ** *
26022722 AACATTTCACCGGCA-TCAAGCCTGCTAGACGTAAAGTCTGAA
1 TTCAGATCACCGGCACT-TAGCCTGCTAGACGTAAAGTCTGAA
26022764 TTATCTCATT
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
81 3 0.03
82 98 0.96
83 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (82 bp):
TTCAGATCACCGGCACTTAGCCTGCTAGACGTAAAGTCTGAAACATATCACCGGCATCAAGCCTA
CTAGACGTAAAGCCTGA
Found at i:26030375 original size:41 final size:41
Alignment explanation
Indices: 26030313--26030422 Score: 166
Period size: 41 Copynumber: 2.7 Consensus size: 41
26030303 ATTTAATATC
*
26030313 TTCAGATCACCAGCACTTAGCCTGCTAGGTTTATAACCTGA
1 TTCAGATCACCAGCACTTAGCCTGCTAGGCTTATAACCTGA
* * *
26030354 TTCATATCACCAGCACTTAGCCTACTAGGCTTATAGCCTGA
1 TTCAGATCACCAGCACTTAGCCTGCTAGGCTTATAACCTGA
* *
26030395 TTCGGATCACCGGCACTTAGCCTGCTAG
1 TTCAGATCACCAGCACTTAGCCTGCTAG
26030423 ACGTAAAGTC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (41 bp):
TTCAGATCACCAGCACTTAGCCTGCTAGGCTTATAACCTGA
Found at i:26030446 original size:41 final size:41
Alignment explanation
Indices: 26030413--26030518 Score: 212
Period size: 41 Copynumber: 2.6 Consensus size: 41
26030403 ACCGGCACTT
26030413 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
26030454 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
26030495 AGCCTGCTAGACGTAAAGTCTGAA
1 AGCCTGCTAGACGTAAAGTCTGAA
26030519 TTATCTCATT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 65 1.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
Found at i:26038662 original size:11 final size:11
Alignment explanation
Indices: 26038646--26038670 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26038636 TTTTTTCTTT
26038646 TTAAATTTTAC
1 TTAAATTTTAC
26038657 TTAAATTTTAC
1 TTAAATTTTAC
26038668 TTA
1 TTA
26038671 CAAGTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (11 bp):
TTAAATTTTAC
Found at i:26050923 original size:26 final size:26
Alignment explanation
Indices: 26050893--26050947 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
26050883 GACCCTTAAC
26050893 AAACAAAAATTACTAAATTCCACTCT
1 AAACAAAAATTACTAAATTCCACTCT
26050919 AAACAAAAATTACTAAATTCCACTCT
1 AAACAAAAATTACTAAATTCCACTCT
26050945 AAA
1 AAA
26050948 GGTACCATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.25
Consensus pattern (26 bp):
AAACAAAAATTACTAAATTCCACTCT
Found at i:26058638 original size:19 final size:19
Alignment explanation
Indices: 26058635--26058678 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
26058625 TTTAAAATAC
*
26058635 TTTTAAAATAATTTTTTAT
1 TTTTAAAATAATTTTTTAA
26058654 TTTTAAAATAATTTTTTAA
1 TTTTAAAATAATTTTTTAA
26058673 TGTTTA
1 T-TTTA
26058679 TTTTAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTAAAATAATTTTTTAA
Found at i:26058656 original size:18 final size:19
Alignment explanation
Indices: 26058635--26058671 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
26058625 TTTAAAATAC
26058635 TTTTAAAATAATTTTTTAT
1 TTTTAAAATAATTTTTTAT
26058654 TTTTAAAATAATTTTTTA
1 TTTTAAAATAATTTTTTA
26058672 ATGTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTAAAATAATTTTTTAT
Found at i:26059557 original size:25 final size:25
Alignment explanation
Indices: 26059529--26059577 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
26059519 TAGGAAGTAA
*
26059529 AATAAAAATAAAAACATATGTATAG
1 AATAAAAATAAAAACATACGTATAG
* * *
26059554 AATATATATATAAACATACGTATA
1 AATAAAAATAAAAACATACGTATA
26059578 CTATATAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (25 bp):
AATAAAAATAAAAACATACGTATAG
Found at i:26059859 original size:15 final size:15
Alignment explanation
Indices: 26059841--26059869 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26059831 AAATGTAAAC
26059841 AAATTTGAAAATAAT
1 AAATTTGAAAATAAT
26059856 AAATTTGAAAATAA
1 AAATTTGAAAATAA
26059870 ATAATAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (15 bp):
AAATTTGAAAATAAT
Found at i:26059919 original size:23 final size:23
Alignment explanation
Indices: 26059892--26059937 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26059882 AAAGAGATTT
* *
26059892 TAAATCAACAATATACAAATCAA
1 TAAATAAACAATACACAAATCAA
**
26059915 TAAATAAATTATACACAAATCAA
1 TAAATAAACAATACACAAATCAA
26059938 CAAAATAAGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.15, G:0.00, T:0.24
Consensus pattern (23 bp):
TAAATAAACAATACACAAATCAA
Found at i:26060172 original size:21 final size:21
Alignment explanation
Indices: 26060144--26060200 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
26060134 AATCATATCT
26060144 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
*
26060165 TTTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
26060186 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
26060201 CCTTGAAGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:26061944 original size:251 final size:252
Alignment explanation
Indices: 26061494--26061996 Score: 864
Period size: 251 Copynumber: 2.0 Consensus size: 252
26061484 ATTGACATTG
* *
26061494 ATGGGAGTTTTAATCTGGTAATTGCTGATGAAAACTTATTGTATTTTCATTTCTGATGAATGCAA
1 ATGGGAGTTTTAATCTAGTAATTACTGATGAAAACTTATTGTATTTTCATTTCTGATGAATGCAA
* *
26061559 GGTTCTTCCATGCACTACCTATCGTTTTCACGATGAAACTATGAAATTTTAGTATATTTTGCTCG
66 GATTCTTCCATGCACTACCTATCGTTTTCACGATGAAACTATGAAATTTTAGTATATTTTGCTAG
* * *
26061624 GCATTTTGGTTAGTGGAAGCATTGCCATTAGGTTCATATTTTGAAGTAGATGATTCAGAAACAAT
131 GCATTTTGGTTAGTGGAAGCATTCCCATTAAGTTCATACTTTGAAGTAGATGATTCAGAAACAAT
*
26061689 GTATTATGAATGGATTTAGCGAAAGATTGTATGAACTATGCAATGTTTTGGTAATGT
196 GTATTATGAATAGATTTAGCGAAAGATTGTATGAACTATGCAATGTTTTGGTAATGT
*
26061746 ATGGGA-TTTTAATCTAGTAATTACTGATGAAAACTTGTTGTATTTTCATTTCTGATGAATGCAA
1 ATGGGAGTTTTAATCTAGTAATTACTGATGAAAACTTATTGTATTTTCATTTCTGATGAATGCAA
* * * * *
26061810 GATTCTTCCGTGCACTAGCTATCTTTTTCATGATGAAACTGTGAAATTTTAGTATATTTTGCTAG
66 GATTCTTCCATGCACTACCTATCGTTTTCACGATGAAACTATGAAATTTTAGTATATTTTGCTAG
26061875 GCATTTTGGTTAGTGGAAGCATTCCCATTAAGTTCATACTTTGAAGTAGATGATTCAGAAACAAT
131 GCATTTTGGTTAGTGGAAGCATTCCCATTAAGTTCATACTTTGAAGTAGATGATTCAGAAACAAT
*
26061940 GTATTATGAATAGATTTAGTGAAAGATTGTATGAACTATGCAATGTTTTGGTAATGT
196 GTATTATGAATAGATTTAGCGAAAGATTGTATGAACTATGCAATGTTTTGGTAATGT
26061997 GCTGCTTTCA
Statistics
Matches: 236, Mismatches: 15, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
251 230 0.97
252 6 0.03
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (252 bp):
ATGGGAGTTTTAATCTAGTAATTACTGATGAAAACTTATTGTATTTTCATTTCTGATGAATGCAA
GATTCTTCCATGCACTACCTATCGTTTTCACGATGAAACTATGAAATTTTAGTATATTTTGCTAG
GCATTTTGGTTAGTGGAAGCATTCCCATTAAGTTCATACTTTGAAGTAGATGATTCAGAAACAAT
GTATTATGAATAGATTTAGCGAAAGATTGTATGAACTATGCAATGTTTTGGTAATGT
Found at i:26062875 original size:6 final size:6
Alignment explanation
Indices: 26062866--26062900 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
26062856 GAGATTGGGG
26062866 TTGGAT TTGGAT TTGGAT TTGGAT TTGGAT TTGGA
1 TTGGAT TTGGAT TTGGAT TTGGAT TTGGAT TTGGA
26062901 GTTGTTTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.00, G:0.34, T:0.49
Consensus pattern (6 bp):
TTGGAT
Found at i:26064873 original size:2 final size:2
Alignment explanation
Indices: 26064866--26064928 Score: 119
Period size: 2 Copynumber: 32.0 Consensus size: 2
26064856 TGTAAATTAG
26064866 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
26064908 CT C- CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT
26064929 TGGAAAGAAA
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 59 0.98
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:26071555 original size:18 final size:17
Alignment explanation
Indices: 26071515--26071561 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
26071505 CGTGTAAGTG
*
26071515 TATAAAAATAATAATGA
1 TATAAAAATAATAATAA
26071532 TGATAAAAATAATGAATAA
1 T-ATAAAAATAAT-AATAA
*
26071551 TATAATAATAA
1 TATAAAAATAA
26071562 GGATACAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 1 0.04
18 20 0.77
19 5 0.19
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (17 bp):
TATAAAAATAATAATAA
Found at i:26071557 original size:15 final size:15
Alignment explanation
Indices: 26071520--26071576 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
26071510 AAGTGTATAA
26071520 AAATAATAATGATGAT
1 AAATAATAATGA-GAT
26071536 AAA-AATAATGA-AT
1 AAATAATAATGAGAT
*
26071549 AATATAATAATAAGGAT
1 AA-ATAATAATGA-GAT
26071566 ACAATAATAAT
1 A-AATAATAAT
26071577 ATTAACAAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
13 4 0.11
14 1 0.03
15 15 0.43
16 3 0.09
17 11 0.31
18 1 0.03
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (15 bp):
AAATAATAATGAGAT
Found at i:26073162 original size:44 final size:44
Alignment explanation
Indices: 26073103--26073199 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
26073093 CTGTAACCTC
* * * *
26073103 AGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTACTGCCT
1 AGGGAGATAAAATCTGCAATCTTCCATCTACTCCACTACTCCCT
* * * **
26073147 AGGGAGATAAGATCTGTAATCTTCCATCTATTCCACTGTTCCCT
1 AGGGAGATAAAATCTGCAATCTTCCATCTACTCCACTACTCCCT
26073191 AGGGAGATA
1 AGGGAGATA
26073200 GAATTACTGG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (44 bp):
AGGGAGATAAAATCTGCAATCTTCCATCTACTCCACTACTCCCT
Found at i:26073491 original size:43 final size:43
Alignment explanation
Indices: 26073432--26073624 Score: 108
Period size: 43 Copynumber: 4.4 Consensus size: 43
26073422 GATCTAAAAT
26073432 CTTCAATCTA-TACCACTGCTGCCCAGGGAAGTAGAATTACTGG
1 CTTCAATCTACT-CCACTGCTGCCCAGGGAAGTAGAATTACTGG
* * * * ***
26073475 CTTCAATGTACTCCACTG-TAACCACAGGGAGGTAAAATTCACCAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAAGTAGAATT-ACTGG
* * * ** * * *
26073520 CTTTAATCTTCTCCACTACTG-CTTGGGGAG-ACAA-TATCTGAAAT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTA-CTG---G
* * *
26073564 ATTCAATCTATTCCATTGCTGCCCAGGGAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
*
26073607 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
26073625 TAACCACAGG
Statistics
Matches: 104, Mismatches: 34, Indels: 24
0.64 0.21 0.15
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 4 0.04
43 35 0.34
44 31 0.30
45 22 0.21
46 7 0.07
47 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
Found at i:26073725 original size:44 final size:44
Alignment explanation
Indices: 26073677--26073992 Score: 167
Period size: 44 Copynumber: 7.2 Consensus size: 44
26073667 CTACTGCTTG
*
26073677 GGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCA
1 GGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* * * **
26073721 GGGAGAT-AGA-AT-TACTAGCTTCAATGTACTCCACTGTAACCTCA
1 GGGAGATAAGATCTGTA--ATCTTCAATCTACTCCACTGTTGCC-CA
* * **** ** * * ** **
26073765 GGGAGGTAAAATCCACCATCTTTGATCTGCTCTACTACTGCTTA
1 GGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* *
26073809 GGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCA
1 GGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* * * **
26073853 GGGAGAT-AGA-AT-TACAGGCTTCAATGTACTCCACTGTAACCTCA
1 GGGAGATAAGATCTGTA-A-TCTTCAATCTACTCCACTGTTGCC-CA
* * * **** * ** *
26073897 GAGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTGCCTA
1 GGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* * *
26073941 AGGAGACAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCA
1 GGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
26073985 GGGAGATA
1 GGGAGATA
26073993 GAATTACTGG
Statistics
Matches: 184, Mismatches: 76, Indels: 24
0.65 0.27 0.08
Matches are distributed among these distances:
41 4 0.02
42 3 0.02
43 44 0.24
44 97 0.53
45 35 0.19
46 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (44 bp):
GGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
Found at i:26074033 original size:44 final size:45
Alignment explanation
Indices: 26073696--26074042 Score: 118
Period size: 44 Copynumber: 7.9 Consensus size: 45
26073686 GATCTGTAAT
* ** *
26073696 CTTCAATCTATTCCACTGTTGCC-CAGGGAGATAGAAT-TACTAG
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAGAATCTACTGG
* * * * ***
26073739 CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCAT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAGAATCTACTGG
** * * * *
26073784 CTTTGATCTGCTCTAC--T-ACTGCTTAGGGAGATA-AGATCTGTAAT--
1 CTTCAATCTACTCCACTGTAAC--CTCAGGGAGATAGA-ATC--TACTGG
* * *
26073828 CTTCAATCTATTCCACTGCT-GCC-CAGGGAGATAGAAT-TACAGG
1 CTTCAATCTACTCCACTG-TAACCTCAGGGAGATAGAATCTACTGG
* * * * * ***
26073871 CTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCCACCAT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAGAATCTACTGG
* * * * * *
26073916 CTTCGATCTACTCCACTACT-GCCT-AAGGAGACA-AGATCTGTAAT--
1 CTTCAATCTACTCCACT-GTAACCTCAGGGAGATAGA-ATC--TACTGG
* **
26073960 CTTCAATCTATTCCACTGTTGCC-CAGGGAGATAGAAT-TACTGG
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAGAATCTACTGG
* * *
26074003 CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAGAATCT
26074043 GCCATCAACC
Statistics
Matches: 216, Mismatches: 61, Indels: 52
0.66 0.19 0.16
Matches are distributed among these distances:
41 5 0.02
42 3 0.01
43 60 0.28
44 105 0.49
45 38 0.18
46 3 0.01
47 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGTAACCTCAGGGAGATAGAATCTACTGG
Found at i:26074048 original size:132 final size:132
Alignment explanation
Indices: 26073061--26074041 Score: 1459
Period size: 132 Copynumber: 7.4 Consensus size: 132
26073051 GCAACTTTAA
* **
26073061 GGAGATAGGAA-TATTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
1 GGAGATA-GAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCT
* * * * *
26073125 TCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCCATCTATTCCACTG-TTCC
65 TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
26073189 CTAG
130 C-AG
* *
26073193 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCCCAGGGAGGTAAAATCCACCATCTT
1 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTT
* * * *
26073258 TGATCTGCTCCACTACTGCTTAGGGAGATAAAACCTGTAATCTTTAATCTATTCGACTGCAATG-
66 TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGC--TGC
26073322 CCAG
129 CCAG
* * *
26073326 GGAGATAGAATTACTGGTTTCAATGTACTCCACTGCAACCTCCGGGAGGTAAAATCCACCATCTT
1 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTT
* * ** *
26073391 TGATATGCTCCACTACTGCTTAGGGAGACAAGATCTAAAATCTTCAATCTATACCACTGCTGCCC
66 TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
26073456 AG
131 AG
* *
26073458 GGA-AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCT
1 GGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCT
* * * * * * * *
26073522 TTAATCTTCTCCACTACTGCTTGGGGAGACAATATCTGAAATATTCAATCTATTCCATTGCTGCC
65 TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
26073587 CAG
130 CAG
* *
26073590 GGA-AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCT
1 GGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCT
* *
26073654 TTGATCTGCTCCACTACTGCTTGGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCC
65 TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
26073719 CAG
130 CAG
*
26073722 GGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTT
1 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTT
*
26073787 TGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
66 TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
26073852 AG
131 AG
* *
26073854 GGAGATAGAATTACAGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCCACCATCTT
1 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTT
* * * * * *
26073919 CGATCTACTCCACTACTGCCTAAGGAGACAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCC
66 TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
26073984 AG
131 AG
26073986 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATC
1 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATC
26074042 TGCCATCAAC
Statistics
Matches: 776, Mismatches: 66, Indels: 14
0.91 0.08 0.02
Matches are distributed among these distances:
131 6 0.01
132 651 0.84
133 116 0.15
134 2 0.00
135 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (132 bp):
GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTT
TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
AG
Found at i:26078382 original size:13 final size:13
Alignment explanation
Indices: 26078364--26078389 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26078354 TGTTTAATTT
26078364 TTTACTAGAAAAC
1 TTTACTAGAAAAC
26078377 TTTACTAGAAAAC
1 TTTACTAGAAAAC
26078390 AAATCTCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
TTTACTAGAAAAC
Found at i:26080369 original size:18 final size:17
Alignment explanation
Indices: 26080329--26080375 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
26080319 CGTGTAAGTG
*
26080329 TATAAAAATAATAATGA
1 TATAAAAATAATAATAA
26080346 TGATAAAAATAATGAATAA
1 T-ATAAAAATAAT-AATAA
*
26080365 TATAATAATAA
1 TATAAAAATAA
26080376 GGATACAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 1 0.04
18 20 0.77
19 5 0.19
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (17 bp):
TATAAAAATAATAATAA
Found at i:26080371 original size:15 final size:15
Alignment explanation
Indices: 26080334--26080390 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
26080324 AAGTGTATAA
26080334 AAATAATAATGATGAT
1 AAATAATAATGA-GAT
26080350 AAA-AATAATGA-AT
1 AAATAATAATGAGAT
*
26080363 AATATAATAATAAGGAT
1 AA-ATAATAATGA-GAT
26080380 ACAATAATAAT
1 A-AATAATAAT
26080391 ATTAACAAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
13 4 0.11
14 1 0.03
15 15 0.43
16 3 0.09
17 11 0.31
18 1 0.03
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (15 bp):
AAATAATAATGAGAT
Found at i:26085103 original size:25 final size:26
Alignment explanation
Indices: 26085072--26085128 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
26085062 CTGTAATTCC
*
26085072 TAAAAACCT-TAACCCTAACAAAA-T
1 TAAAAAACTCTAACCCTAACAAAATT
* *
26085096 TAAAAAACTCTAACTCTATCAAAATT
1 TAAAAAACTCTAACCCTAACAAAATT
26085122 TAAAAAA
1 TAAAAAA
26085129 AAATCCAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 8 0.29
25 12 0.43
26 8 0.29
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (26 bp):
TAAAAAACTCTAACCCTAACAAAATT
Found at i:26091523 original size:16 final size:16
Alignment explanation
Indices: 26091502--26091540 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
26091492 TGAATTACTG
26091502 ATTACAGCTCTATTAT
1 ATTACAGCTCTATTAT
* *
26091518 ATTACAACTCTATTTT
1 ATTACAGCTCTATTAT
26091534 ATTACAG
1 ATTACAG
26091541 TAAGCCAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.33, C:0.18, G:0.05, T:0.44
Consensus pattern (16 bp):
ATTACAGCTCTATTAT
Found at i:26091741 original size:16 final size:16
Alignment explanation
Indices: 26091720--26091750 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26091710 CACTGAAATT
*
26091720 GAATAGGATTGTAATG
1 GAATAGAATTGTAATG
26091736 GAATAGAATTGTAAT
1 GAATAGAATTGTAAT
26091751 TTGTAATTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.26, T:0.32
Consensus pattern (16 bp):
GAATAGAATTGTAATG
Found at i:26109103 original size:24 final size:24
Alignment explanation
Indices: 26109066--26109111 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
26109056 CAGTAAGTAT
* *
26109066 ATAAAATTTGAAAATTAATTTAAA
1 ATAAAATATAAAAATTAATTTAAA
*
26109090 ATAAAATATAAAAATTTATTTA
1 ATAAAATATAAAAATTAATTTA
26109112 CATATTAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
ATAAAATATAAAAATTAATTTAAA
Found at i:26117056 original size:42 final size:43
Alignment explanation
Indices: 26116959--26117062 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 43
26116949 AGAAGTAAGG
* * *
26116959 ACACACAGTCGTGTCCCAGCCTGTGTAACTCACTGACTTGACT
1 ACACACGGTCGTGTCCCAGCCTATGTAACTCACTAACTTGACT
** * * *
26117002 -CACACGACCGTGTGCTAGCTTATGTAACTCACTAACTTGA-T
1 ACACACGGTCGTGTCCCAGCCTATGTAACTCACTAACTTGACT
*
26117043 ACACACGGTCGTGTCTCAGC
1 ACACACGGTCGTGTCCCAGC
26117063 TCGTGTCTCA
Statistics
Matches: 47, Mismatches: 13, Indels: 3
0.75 0.21 0.05
Matches are distributed among these distances:
41 1 0.02
42 46 0.98
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (43 bp):
ACACACGGTCGTGTCCCAGCCTATGTAACTCACTAACTTGACT
Found at i:26120074 original size:30 final size:30
Alignment explanation
Indices: 26120028--26120121 Score: 134
Period size: 30 Copynumber: 3.1 Consensus size: 30
26120018 ATTTCTTATG
* *
26120028 CCAATATCTCGATACCCATATATTTGATTTT
1 CCAATAT-TTGATACCCATATATTTGACTTT
*
26120059 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATATTTGACTTT
* *
26120089 CCATTATTTGATAACCATATATTTGACTTT
1 CCAATATTTGATACCCATATATTTGACTTT
26120119 CCA
1 CCA
26120122 TAAATGATTG
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 50 0.88
31 7 0.12
ACGTcount: A:0.29, C:0.22, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATATTTGACTTT
Found at i:26120083 original size:15 final size:15
Alignment explanation
Indices: 26120038--26120114 Score: 68
Period size: 15 Copynumber: 5.1 Consensus size: 15
26120028 CCAATATCTC
26120038 GATACCCATATATTT
1 GATACCCATATATTT
**
26120053 GATTTTCCA-ATATTT
1 GA-TACCCATATATTT
*
26120068 GATACCCATATCTTT
1 GATACCCATATATTT
**
26120083 GACTTTCCAT-TATTT
1 GA-TACCCATATATTT
*
26120098 GATAACCATATATTT
1 GATACCCATATATTT
26120113 GA
1 GA
26120115 CTTTCCATAA
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
14 9 0.19
15 30 0.62
16 9 0.19
ACGTcount: A:0.30, C:0.18, G:0.08, T:0.44
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:26124734 original size:30 final size:30
Alignment explanation
Indices: 26124688--26124781 Score: 134
Period size: 30 Copynumber: 3.1 Consensus size: 30
26124678 ATTTCTTATG
* *
26124688 CCAATATCTCGATACCCATATATTTGATTTT
1 CCAATAT-TTGATACCCATATATTTGACTTT
*
26124719 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATATTTGACTTT
* *
26124749 CCATTATTTGATAACCATATATTTGACTTT
1 CCAATATTTGATACCCATATATTTGACTTT
26124779 CCA
1 CCA
26124782 TAAATGATTG
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 50 0.88
31 7 0.12
ACGTcount: A:0.29, C:0.22, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATATTTGACTTT
Found at i:26124743 original size:15 final size:15
Alignment explanation
Indices: 26124698--26124774 Score: 68
Period size: 15 Copynumber: 5.1 Consensus size: 15
26124688 CCAATATCTC
26124698 GATACCCATATATTT
1 GATACCCATATATTT
**
26124713 GATTTTCCA-ATATTT
1 GA-TACCCATATATTT
*
26124728 GATACCCATATCTTT
1 GATACCCATATATTT
**
26124743 GACTTTCCAT-TATTT
1 GA-TACCCATATATTT
*
26124758 GATAACCATATATTT
1 GATACCCATATATTT
26124773 GA
1 GA
26124775 CTTTCCATAA
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
14 9 0.19
15 30 0.62
16 9 0.19
ACGTcount: A:0.30, C:0.18, G:0.08, T:0.44
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:26129505 original size:25 final size:24
Alignment explanation
Indices: 26129471--26129522 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
26129461 TTTTTAGTAA
*
26129471 TTTAATTTTCATTCTTTTATATTTT
1 TTTAACTTTCATT-TTTTATATTTT
* * *
26129496 TTTAACTTTCCTTTTTTTTCTTTT
1 TTTAACTTTCATTTTTTATATTTT
26129520 TTT
1 TTT
26129523 TTTCATTCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.13, C:0.12, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTAACTTTCATTTTTTATATTTT
Found at i:26134784 original size:3 final size:3
Alignment explanation
Indices: 26134776--26134807 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
26134766 TTTAAAGCAT
26134776 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
26134808 GATTTATGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:26135026 original size:7 final size:7
Alignment explanation
Indices: 26135016--26135040 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26135006 AAAATATATA
26135016 AAATTTG
1 AAATTTG
26135023 AAATTTG
1 AAATTTG
26135030 AAATTTG
1 AAATTTG
26135037 AAAT
1 AAAT
26135041 CCTAAAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (7 bp):
AAATTTG
Found at i:26136274 original size:20 final size:21
Alignment explanation
Indices: 26136227--26136271 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
26136217 TATAAATCGC
*
26136227 AAAATAATAAAGTAAAAGGGA
1 AAAATAATAAAGGAAAAGGGA
26136248 AAAATAATAAAGGAAAAGGGA
1 AAAATAATAAAGGAAAAGGGA
26136269 AAA
1 AAA
26136272 TAAGGACTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.20, T:0.11
Consensus pattern (21 bp):
AAAATAATAAAGGAAAAGGGA
Found at i:26138254 original size:14 final size:13
Alignment explanation
Indices: 26138234--26138265 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
26138224 TATTTTAATA
26138234 TTTTATTATATTT
1 TTTTATTATATTT
26138247 TATTTATTATATTT
1 T-TTTATTATATTT
26138261 TTTTA
1 TTTTA
26138266 AAAAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTATTATATTT
Found at i:26140140 original size:24 final size:24
Alignment explanation
Indices: 26140113--26140158 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
26140103 AAGCTTATGA
* *
26140113 GAGCCAATAACGGGTAGCTCCGAC
1 GAGCCAATAACAGGAAGCTCCGAC
*
26140137 GAGCCATTAACAGGAAGCTCCG
1 GAGCCAATAACAGGAAGCTCCG
26140159 TATAGCCACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.13
Consensus pattern (24 bp):
GAGCCAATAACAGGAAGCTCCGAC
Found at i:26143259 original size:33 final size:33
Alignment explanation
Indices: 26143217--26143284 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
26143207 ATTTGCCTTA
*
26143217 GAGCATCAGCAACTACATTTGTCTTTCCTGGAT
1 GAGCATCAGCAACTACATTTGCCTTTCCTGGAT
26143250 GAGCATCAGCAACTACATTTGCCTTTCCTGGAT
1 GAGCATCAGCAACTACATTTGCCTTTCCTGGAT
26143283 GA
1 GA
26143285 TAATCAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (33 bp):
GAGCATCAGCAACTACATTTGCCTTTCCTGGAT
Found at i:26148153 original size:24 final size:24
Alignment explanation
Indices: 26148108--26148163 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
26148098 GAAGCTCATG
* * * *
26148108 AGAGCCAATAACGGGTAGCTCCGA
1 AGAGCCATTAACGAGAAACTCCGA
*
26148132 AGAGCCATTAACGAGAAACTCCGG
1 AGAGCCATTAACGAGAAACTCCGA
*
26148156 ATAGCCAT
1 AGAGCCAT
26148164 ATATTAGGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.25, G:0.25, T:0.14
Consensus pattern (24 bp):
AGAGCCATTAACGAGAAACTCCGA
Found at i:26148272 original size:26 final size:26
Alignment explanation
Indices: 26148096--26148285 Score: 71
Period size: 26 Copynumber: 7.7 Consensus size: 26
26148086 GCTATATAAT
*
26148096 GGGAAGCTCATG-AGAGCCA-ATAAC
1 GGGAAGCTCATGAAGAGCCATATATC
* * *
26148120 GGGTAGCTC-CGAAGAGCCAT-TAAC
1 GGGAAGCTCATGAAGAGCCATATATC
* * * * * *
26148144 GAGAAACTC-CGGATAGCCATATATT
1 GGGAAGCTCATGAAGAGCCATATATC
* * * *
26148169 AGGAAGTTCAAG-TGAGCC--ATATC
1 GGGAAGCTCATGAAGAGCCATATATC
* * *
26148192 GAGAAGCT-ATGGAGAGCCAT-TAATA
1 GGGAAGCTCATGAAGAGCCATAT-ATC
* ** * *
26148217 AGGAAGCTCACAAAGAGCC-TTTATTT
1 GGGAAGCTCATGAAGAGCCATATA-TC
26148243 GGGAAGCTCATGAAGAGCCATATATC
1 GGGAAGCTCATGAAGAGCCATATATC
*
26148269 GGGACGCTCAT-AAGAGC
1 GGGAAGCTCATGAAGAGC
26148286 TATGGTGTGC
Statistics
Matches: 119, Mismatches: 35, Indels: 23
0.67 0.20 0.13
Matches are distributed among these distances:
22 2 0.02
23 15 0.13
24 35 0.29
25 27 0.23
26 37 0.31
27 3 0.03
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (26 bp):
GGGAAGCTCATGAAGAGCCATATATC
Found at i:26155428 original size:41 final size:41
Alignment explanation
Indices: 26155371--26155452 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
26155361 CCATAAGCAA
26155371 GAAATGCGCACTTTGTCAAGGTAATAGAGAGGACGAAAATC
1 GAAATGCGCACTTTGTCAAGGTAATAGAGAGGACGAAAATC
26155412 GAAATGCGCACTTTGTCAAGGTAATAGAGAGGACGAAAATC
1 GAAATGCGCACTTTGTCAAGGTAATAGAGAGGACGAAAATC
26155453 ATTTGTTCTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.20
Consensus pattern (41 bp):
GAAATGCGCACTTTGTCAAGGTAATAGAGAGGACGAAAATC
Found at i:26156756 original size:29 final size:30
Alignment explanation
Indices: 26156688--26156767 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
26156678 ATCCCAAAAC
*
26156688 TATACATGAACTATGATTTAATATGCAATTG
1 TATACATGAACTTTGATTT-ATATGCAATTG
* * *
26156719 TATACATGAACTTTGATTT-TGTGTAATTT
1 TATACATGAACTTTGATTTATATGCAATTG
*
26156748 TATACATGAAATTTTGATTT
1 TATACATG-AACTTTGATTT
26156768 GATCCAATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 15 0.35
30 10 0.23
31 18 0.42
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.46
Consensus pattern (30 bp):
TATACATGAACTTTGATTTATATGCAATTG
Found at i:26156944 original size:30 final size:29
Alignment explanation
Indices: 26156909--26156989 Score: 94
Period size: 30 Copynumber: 2.8 Consensus size: 29
26156899 GATTAAATTA
* *
26156909 AAATTAAAGTTTCAAGTATACATTTAACC
1 AAATTAAAGTTTCATGTATACATTGAACC
*
26156938 ATAATTAGAGTTTCATGTGTATA-ATTGAACC
1 A-AATTAAAGTTTCA--TGTATACATTGAACC
26156969 AAATTAAAG-TTCATGTATACA
1 AAATTAAAGTTTCATGTATACA
26156990 ATTGCGCATT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
27 6 0.14
28 1 0.02
29 5 0.11
30 19 0.43
31 8 0.18
32 5 0.11
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (29 bp):
AAATTAAAGTTTCATGTATACATTGAACC
Found at i:26158822 original size:35 final size:35
Alignment explanation
Indices: 26158776--26158851 Score: 152
Period size: 35 Copynumber: 2.2 Consensus size: 35
26158766 TTATTGGTTC
26158776 TTCATAAGGTTCAATATAAAGTCTGTAAAAATCTG
1 TTCATAAGGTTCAATATAAAGTCTGTAAAAATCTG
26158811 TTCATAAGGTTCAATATAAAGTCTGTAAAAATCTG
1 TTCATAAGGTTCAATATAAAGTCTGTAAAAATCTG
26158846 TTCATA
1 TTCATA
26158852 CCTAGGCATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (35 bp):
TTCATAAGGTTCAATATAAAGTCTGTAAAAATCTG
Found at i:26168754 original size:11 final size:11
Alignment explanation
Indices: 26168734--26168783 Score: 61
Period size: 12 Copynumber: 4.6 Consensus size: 11
26168724 AGAAAATTAA
26168734 AAAAAGTATTTT
1 AAAAA-TATTTT
26168746 AAAAATATTTT
1 AAAAATATTTT
26168757 -AAAAT-TTTT
1 AAAAATATTTT
26168766 -AAAATATTTTT
1 AAAAATA-TTTT
26168777 AAAAATA
1 AAAAATA
26168784 AAAAATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
9 9 0.26
10 5 0.14
11 10 0.29
12 11 0.31
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:26168769 original size:19 final size:20
Alignment explanation
Indices: 26168741--26168780 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
26168731 TAAAAAAAGT
26168741 ATTTTAAAAATA-TTTTAAA
1 ATTTTAAAAATATTTTTAAA
*
26168760 ATTTTTAAAATATTTTTAAA
1 ATTTTAAAAATATTTTTAAA
26168780 A
1 A
26168781 ATAAAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTTTAAAAATATTTTTAAA
Found at i:26169835 original size:21 final size:21
Alignment explanation
Indices: 26169811--26169850 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26169801 AATTTTAAAC
26169811 TTTTTAT-ACTTTTTAAAATT
1 TTTTTATAACTTTTTAAAATT
*
26169831 TTTTTATAATTTTTTAAAAT
1 TTTTTATAACTTTTTAAAAT
26169851 ATGAATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTTATAACTTTTTAAAATT
Found at i:26169886 original size:19 final size:20
Alignment explanation
Indices: 26169855--26169906 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 20
26169845 TAAAATATGA
26169855 ATTTTGAAATTTTT-ATAAA-T
1 ATTTTG-AATTTTTGA-AAATT
26169875 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTGAAAATT
26169895 ATTTT-AATTTTT
1 ATTTTGAATTTTT
26169907 TTTGTAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.60
Consensus pattern (20 bp):
ATTTTGAATTTTTGAAAATT
Found at i:26173812 original size:57 final size:57
Alignment explanation
Indices: 26173733--26173847 Score: 169
Period size: 57 Copynumber: 2.0 Consensus size: 57
26173723 GATAAGAATG
*
26173733 CATTAGTTATAGATACGAACAAAATATGTTTAACATGCATTAAAAGGCATCG-TGGTT
1 CATTAGTTATAGATACGAACAAAATATGATTAACATGCATTAAAAGGCAT-GATGGTT
* * * *
26173790 CATTGGTTTTAGATGCGAACAAATTATGATTAACATGCATTAAAAGGCATGATGGTT
1 CATTAGTTATAGATACGAACAAAATATGATTAACATGCATTAAAAGGCATGATGGTT
26173847 C
1 C
26173848 TTAAGGATTA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
56 1 0.02
57 51 0.98
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (57 bp):
CATTAGTTATAGATACGAACAAAATATGATTAACATGCATTAAAAGGCATGATGGTT
Found at i:26175671 original size:73 final size:73
Alignment explanation
Indices: 26175547--26175688 Score: 230
Period size: 73 Copynumber: 1.9 Consensus size: 73
26175537 TCGGGTTTAG
* * **
26175547 AAAAGGGATCATGCCCAGAAAGTTAGGACACAATCTTTTCTTAATTCCCGAGATCGTTTAAAACT
1 AAAAAGGATCATACCCAGAAAGTTAGGACACAATCTCCTCTTAATTCCCGAGATCGTTTAAAACT
26175612 TGAGAAAA
66 TGAGAAAA
* *
26175620 AAAAAGGATCATACCCAGTAAGTTAGGACACGATCTCCTCTTAATTCCCGAGATCGTTTAAAACT
1 AAAAAGGATCATACCCAGAAAGTTAGGACACAATCTCCTCTTAATTCCCGAGATCGTTTAAAACT
26175685 TGAG
66 TGAG
26175689 TTTGAAAGGA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 63 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.26
Consensus pattern (73 bp):
AAAAAGGATCATACCCAGAAAGTTAGGACACAATCTCCTCTTAATTCCCGAGATCGTTTAAAACT
TGAGAAAA
Found at i:26176058 original size:30 final size:30
Alignment explanation
Indices: 26176022--26176195 Score: 278
Period size: 30 Copynumber: 5.8 Consensus size: 30
26176012 TAAAAAAAAC
*
26176022 CTAGCCACTCCTTTTCCACCACCAACTCCA
1 CTAGCCACACCTTTTCCACCACCAACTCCA
26176052 CTAGCCACACCTTTTCCACCACCAACTCCA
1 CTAGCCACACCTTTTCCACCACCAACTCCA
* *
26176082 CTAGCCACTCTTTTTCCACCACCAACTCCA
1 CTAGCCACACCTTTTCCACCACCAACTCCA
26176112 CTAGCCACACCTTTTCCACCACCAACTCCA
1 CTAGCCACACCTTTTCCACCACCAACTCCA
*
26176142 CTAGCCAC-TCTTTTCCCACCACCAACTCCA
1 CTAGCCACACCTTTT-CCACCACCAACTCCA
* *
26176172 CTAGCCACACATTCTCCACCACCA
1 CTAGCCACACCTTTTCCACCACCA
26176196 CTTGTACCTA
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
29 5 0.04
30 125 0.94
31 3 0.02
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.22
Consensus pattern (30 bp):
CTAGCCACACCTTTTCCACCACCAACTCCA
Found at i:26176115 original size:60 final size:60
Alignment explanation
Indices: 26176022--26176195 Score: 312
Period size: 60 Copynumber: 2.9 Consensus size: 60
26176012 TAAAAAAAAC
*
26176022 CTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCA
1 CTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCA
26176082 CTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCA
1 CTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCA
* * *
26176142 CTAGCCACTCTTTTCCCACCACCAACTCCACTAGCCACACATTCTCCACCACCA
1 CTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCA
26176196 CTTGTACCTA
Statistics
Matches: 110, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 110 1.00
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.22
Consensus pattern (60 bp):
CTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCA
Found at i:26176303 original size:26 final size:26
Alignment explanation
Indices: 26176273--26176326 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
26176263 TATTTTGTAT
*
26176273 AGGGGGGATTTTTTGGAGAGTTTTGG
1 AGGGGAGATTTTTTGGAGAGTTTTGG
**
26176299 AGGGGATTTTTTTTGGAGAGTTTTGG
1 AGGGGAGATTTTTTGGAGAGTTTTGG
26176325 AG
1 AG
26176327 AGAAAGTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.41
Consensus pattern (26 bp):
AGGGGAGATTTTTTGGAGAGTTTTGG
Found at i:26176805 original size:25 final size:25
Alignment explanation
Indices: 26176777--26176918 Score: 83
Period size: 25 Copynumber: 5.6 Consensus size: 25
26176767 ATATTACGTA
* *
26176777 TATATATATTTTATACTATTTTATT
1 TATATATATTTAATACTATATTATT
* *
26176802 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATT
* * ** *
26176827 TATATTTTTTTTTCTAC-ATGTTATCT
1 TATA-TATATTTAATACTATATTAT-T
*
26176853 TATGTATATATCTT-A-ACTATATTATG
1 TA--TATATAT-TTAATACTATATTATT
* * *
26176879 TATATATTTTTAACACTATATTATG
1 TATATATATTTAATACTATATTATT
* *
26176904 TACATATTTTTAATA
1 TATATATATTTAATA
26176919 TTATCACGTA
Statistics
Matches: 91, Mismatches: 18, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
23 2 0.02
24 7 0.08
25 55 0.60
26 14 0.15
27 9 0.10
28 4 0.04
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATT
Found at i:26177105 original size:17 final size:17
Alignment explanation
Indices: 26177064--26177112 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 17
26177054 ATATTAATTA
*
26177064 TTAT-TATTCTAATATT
1 TTATATATTTTAATATT
*
26177080 TT-GATATTTTAATATT
1 TTATATATTTTAATATT
*
26177096 TTATATATTTTATTATT
1 TTATATATTTTAATATT
26177113 CACATCATTG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 15 0.56
17 12 0.44
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (17 bp):
TTATATATTTTAATATT
Found at i:26185565 original size:69 final size:70
Alignment explanation
Indices: 26185392--26185565 Score: 197
Period size: 71 Copynumber: 2.5 Consensus size: 70
26185382 TTCATGCTTT
* * ** * *
26185392 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACATGTTGAGGTATTTTTAATTTTTTT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTATGT
26185457 TTTCAA
66 TTT-AA
* * ** * *
26185463 AATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTATGT
26185528 TTT-A
66 TTTAA
** *
26185532 AATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
26185566 TTTAATTTTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
69 30 0.35
71 56 0.65
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.35
Consensus pattern (70 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTATGT
TTTAA
Found at i:26185837 original size:148 final size:148
Alignment explanation
Indices: 26185569--26185916 Score: 486
Period size: 148 Copynumber: 2.3 Consensus size: 148
26185559 TAAGCCTTTT
* * *
26185569 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGG
26185634 TAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
66 TAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GG
26185699 -ACACGCTGAGGTAATTTC
130 TACACGCTGAGGTAATTTC
* * *
26185717 AATTTCTG-TTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGTTTTTCAAAA-TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAG
* * **
26185781 GTATTTTCAATTTCTGTT-TTAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCG
65 GTAATTTCAATTTCTGTTGTT-AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCG
* *
26185845 GTTCACATGCTGAGGTATTTTC
129 G-T-ACACGCTGAGGTAATTTC
* *
26185867 AATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AATTTCTGTTTTT--CAAAATCAACTCATATTGCGAGAGATGAGTTGAGC
26185917 TTCAGATTAC
Statistics
Matches: 176, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
147 13 0.07
148 104 0.59
150 24 0.14
151 4 0.02
152 27 0.15
153 4 0.02
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.34
Consensus pattern (148 bp):
AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGT
ACACGCTGAGGTAATTTC
Found at i:26185941 original size:76 final size:75
Alignment explanation
Indices: 26185583--26185921 Score: 454
Period size: 76 Copynumber: 4.5 Consensus size: 75
26185573 TTTGTTTTTC
* *
26185583 AAAATCAACTCATATTGCTAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
26185648 GTTGTTAAAAA
66 GTT-TTAAAAA
* *
26185659 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
26185724 GTTTT---CA
66 GTTTTAAAAA
* * * * *
26185731 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
26185796 GTTTTAAAAAA
66 GTTTT-AAAAA
* * *
26185807 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
*
26185871 TCTGTTTT-TAAA
63 TCTGTTTTAAAAA
* *
26185883 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAG
26185922 ATTACACACT
Statistics
Matches: 237, Mismatches: 18, Indels: 15
0.88 0.07 0.06
Matches are distributed among these distances:
72 66 0.28
75 3 0.01
76 139 0.59
77 1 0.00
78 28 0.12
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTAAAAA
Found at i:26186117 original size:127 final size:129
Alignment explanation
Indices: 26185807--26186175 Score: 374
Period size: 127 Copynumber: 2.8 Consensus size: 129
26185797 TTTTAAAAAA
* * *
26185807 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATTT
*
26185872 CTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGC-TTCAGATTACACACTGTG
64 CTG-TTTT--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTCAGATTACACACTGT-
26185935 GTATT
125 GTATT
**** * * * *
26185940 TTTTTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCT
* * * * *
26186005 GTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTA-ATTTC-TACT-T-T-T
66 GTTT-T-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTCAGATTACACACTGTGTAT
26186065 T
129 T
* * * *
26186066 CAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTT
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
* ** *
26186131 TGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
65 TGT-TTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTT
26186176 AGGACACGCT
Statistics
Matches: 195, Mismatches: 36, Indels: 17
0.79 0.15 0.07
Matches are distributed among these distances:
126 34 0.17
127 57 0.29
128 2 0.01
129 1 0.01
130 36 0.18
131 30 0.15
132 3 0.02
133 32 0.16
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (129 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCT
GTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTCAGATTACACACTGTGTATT
Found at i:26186156 original size:72 final size:72
Alignment explanation
Indices: 26186075--26186215 Score: 221
Period size: 72 Copynumber: 2.0 Consensus size: 72
26186065 TCAAAATCAG
* * *
26186075 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTT-T
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGT-TTTGT
26186139 AATTTCAA
65 AATTTCAA
* *
26186147 CTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTATTTTCAATTTTCGTTTTGTA
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTGTA
26186212 ATTT
66 ATTT
26186216 ATGTTTCAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
71 3 0.05
72 60 0.95
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.38
Consensus pattern (72 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTGTA
ATTTCAA
Found at i:26186328 original size:71 final size:72
Alignment explanation
Indices: 26186211--26186402 Score: 242
Period size: 73 Copynumber: 2.7 Consensus size: 72
26186201 TTCGTTTTGT
** * *
26186211 AATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-AGACGCTGAG
1 AATTTATG-TTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAG
26186275 GTAATTTC
65 GTAATTTC
* **
26186283 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAG
** *
26186348 GTGGTTTT
65 GTAATTTC
* * *
26186356 AATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGA
1 AATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
26186403 CCCTTGGCTC
Statistics
Matches: 102, Mismatches: 16, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
71 40 0.39
72 7 0.07
73 55 0.54
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (72 bp):
AATTTATGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGG
TAATTTC
Found at i:26186445 original size:14 final size:14
Alignment explanation
Indices: 26186426--26186460 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
26186416 AGCTGAGGTA
26186426 TTTTCAATTTCTGG
1 TTTTCAATTTCTGG
*
26186440 TTTTCAATTTCTGT
1 TTTTCAATTTCTGG
26186454 TTTTCAA
1 TTTTCAA
26186461 AAATCGACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.14, G:0.09, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:26186492 original size:162 final size:159
Alignment explanation
Indices: 26186279--26187165 Score: 1003
Period size: 162 Copynumber: 5.6 Consensus size: 159
26186269 GCTGAGGTAA
* *
26186279 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
** * * * * * * *
26186344 TGAGGTGGTTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGACCCTTG
66 TGAGGTAATTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCG
26186409 GCTCACAAGCTGAGGTATTTTCAATTTCTGGT
131 GCTCAC--GCTGAGGTATTTTCAATTT-TGGT
* * *
26186441 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* * *
26186506 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
66 TGAGGTAATTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCG
* *
26186571 GCTCACATGCTGAGGTCTTTTCAATTTCTGTT
131 GCTCAC--GCTGAGGTATTTTCAATTT-TGGT
** *
26186603 TTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAGA
1 TTTCAATTTCTGTT--T-ATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * * * *
26186668 CGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGATAGGTGAGTTGAGC
63 CGCTGAGGTA-ATTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGC
** * *
26186733 CTCGGGGCACGCTGAGGTATTGTCAATTTTTGT
127 CTCGGCTCACGCTGAGGTATTTTCAATTTTGGT
* * * *
26186766 GTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATG
1 -TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* * * *
26186831 CTGAGGTAATTGCAATTT-T-TATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGC
65 CTGAGGTAATTTCAATTTCTGT-TTATC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGC
26186894 CTCGGCTCACGTGCTGAGGTATTTTCAA---T--T
127 CTCGGCTCAC--GCTGAGGTATTTTCAATTTTGGT
* * * *
26186924 TTT--GTTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGCGTTGAGCCTCAGGACATGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
*
26186986 TGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCG
66 TGAGGTAATTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCG
** * * *
26187051 GGGCACGCTGAGGAATTGTCGATTTTTGTGT
131 GCTCACGCTGAGGTATTTTC-AATTTTG-GT
* ** * *
26187082 TTT-AATTTC----AAAAAATAAATCAACTCATATTGTGAGAGGTGAATTGAGCCTCAGGACACG
1 TTTCAATTTCTGTTTATCAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
*
26187142 CTGAGGTATTTTCAATTTCTGTTT
65 CTGAGGTAATTTCAATTTCTGTTT
26187166 TTTTCCAATT
Statistics
Matches: 627, Mismatches: 76, Indels: 49
0.83 0.10 0.07
Matches are distributed among these distances:
151 12 0.02
152 1 0.00
153 41 0.07
154 60 0.10
155 16 0.03
156 2 0.00
157 66 0.11
158 6 0.01
159 9 0.01
160 8 0.01
161 90 0.14
162 160 0.26
163 17 0.03
164 31 0.05
165 51 0.08
166 57 0.09
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (159 bp):
TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTAATTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCG
GCTCACGCTGAGGTATTTTCAATTTTGGT
Found at i:26186560 original size:73 final size:74
Alignment explanation
Indices: 26186441--26186608 Score: 257
Period size: 73 Copynumber: 2.3 Consensus size: 74
26186431 AATTTCTGGT
* *
26186441 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GACACG
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACG
26186505 CTGAGGTAA
66 CTGAGGTAA
* * *
26186514 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-CACAC
**
26186579 GCTGAGGTCT
65 GCTGAGGTAA
26186589 TTTCAATTTCTGTTTTTCAA
1 TTTCAATTTCTGTTTTTCAA
26186609 TTTCTGTTCG
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
73 55 0.65
75 30 0.35
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36
Consensus pattern (74 bp):
TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACG
CTGAGGTAA
Found at i:26186607 original size:14 final size:14
Alignment explanation
Indices: 26186588--26186616 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26186578 TGCTGAGGTC
26186588 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
26186602 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
26186616 T
1 T
26186617 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:26186787 original size:87 final size:87
Alignment explanation
Indices: 26186684--26186850 Score: 282
Period size: 87 Copynumber: 1.9 Consensus size: 87
26186674 GGTATTTTTA
* * *
26186684 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGGCACGCTGAG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
26186749 GT-ATTGTCAATTTTTGTGTTTC
66 GTAATTG-CAATTTTTGTGTTTC
*
26186771 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
26186836 GTAATTGCAATTTTT
66 GTAATTGCAATTTTT
26186851 ATTGTCAAAA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
87 71 0.95
88 4 0.05
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (87 bp):
AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
GTAATTGCAATTTTTGTGTTTC
Found at i:26186912 original size:327 final size:313
Alignment explanation
Indices: 26186226--26187165 Score: 1130
Period size: 327 Copynumber: 3.0 Consensus size: 313
26186216 ATGTTTCAAA
* * *
26186226 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAG---AC--GCTGAGGTAATTTCAA-
1 AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTTTCAAT
26186285 ---T-TTT-TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
65 TTTTGTTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* * ** * * * *
26186345 GAGGTGGTTTTAATTTATGTTCATCAAAAATTAGCTCATATTGCAAGAGGTGAGTTGACCCTTGG
130 GAGGT-ATTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG
** * * * *
26186410 CTCACAAGCTGAGGTATTTTCAATTTCTG-GTTTTCAATTTCTGTTTTTCAAAAATCGACTCATA
194 GGCAC--GCTGAGGTATTGTCAATTTTTGTG-TTTCAATTTATGTTTTTCAAAAATCAACTCATA
26186474 TTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTC
256 TTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTC
* * * *
26186532 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
*
26186597 TCTGTTTTTCAAT-TTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 T-T-TGTTTC--TGTT-TG-TC------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * *
26186661 CAGGAGACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGATAGGTGA
119 CAGGACACGCTGAGGTA-TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGA
26186726 GTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTTTTGTGTTTCAATTTATGTTTTTCAAAAAT
182 GTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTTTTGTGTTTCAATTTATGTTTTTCAAAAAT
* *
26186791 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTGCAATTT-T-TATT
247 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGT-TT
26186854 GTC
311 GTC
* *
26186857 AAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAA
1 --AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAA
* *
26186922 TTTTTGTTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGCGTTGAGCCTCAGGACATGC
64 TTTTTGTTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
*
26186986 TGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCG
129 TGAGGT-ATTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCG
* * * ***
26187051 GGGCACGCTGAGGAATTGTCGATTTTTGTGTTTTAATTTCA-----AAAAATAAATCAACTCATA
193 GGGCACGCTGAGGTATTGTCAATTTTTGTGTTTCAATTT-ATGTTTTTCAA-AAATCAACTCATA
* * * *
26187111 TTGTGAGAGGTGAATTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTT
256 TTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTT
26187166 TTTTCCAATT
Statistics
Matches: 550, Mismatches: 49, Indels: 64
0.83 0.07 0.10
Matches are distributed among these distances:
305 1 0.00
306 36 0.07
308 2 0.00
310 16 0.03
311 56 0.10
312 3 0.01
313 1 0.00
314 87 0.16
315 53 0.10
316 2 0.00
317 3 0.01
319 2 0.00
320 3 0.01
321 2 0.00
322 2 0.00
323 3 0.01
324 3 0.01
325 11 0.02
326 99 0.18
327 117 0.21
328 48 0.09
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.34
Consensus pattern (313 bp):
AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
TTTGTTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
AGGTATTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGG
CACGCTGAGGTATTGTCAATTTTTGTGTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCG
AGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTC
Found at i:26187037 original size:73 final size:73
Alignment explanation
Indices: 26186767--26187167 Score: 362
Period size: 73 Copynumber: 5.2 Consensus size: 73
26186757 AATTTTTGTG
* *
26186767 TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
26186832 TGAGGTAA
66 TGAGGTAA
* * * * *
26186840 TTGCAATTT-T-TATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTC-GGCTC
1 TTTCAATTTCTGT-TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---
* *
26186902 ACGTGCTGAGGTAT
60 ACATGCTGAGGTAA
* *
26186916 TTTCAATTTTTGTTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGCGTTGAGCCTCAGG
1 TTTCAA------TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
26186980 ACATGCTGAGGTAA
60 ACATGCTGAGGTAA
* * * *
26186994 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
26187059 TGAGG-AA
66 TGAGGTAA
* * * *
26187066 TTGTCGATTTTTGTGTTTTAATTTCAAAAAATAAATCAACTCATATTGTGAGAGGTGAATTGAGC
1 TT-TC-A-ATTTCTG--TT--TTTC----AA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
26187131 CTCAGGACACGCTGAGGTAT
54 CTCAGGACATGCTGAGGTAA
26187151 TTTCAATTTCTGTTTTT
1 TTTCAATTTCTGTTTTT
26187168 TTCCAATTTC
Statistics
Matches: 269, Mismatches: 30, Indels: 53
0.76 0.09 0.15
Matches are distributed among these distances:
71 1 0.00
72 20 0.07
73 58 0.22
74 36 0.13
75 5 0.02
76 17 0.06
77 2 0.01
78 21 0.08
79 4 0.01
80 35 0.13
81 2 0.01
82 8 0.03
83 9 0.03
84 48 0.18
85 3 0.01
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (73 bp):
TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
TGAGGTAA
Found at i:26187176 original size:17 final size:17
Alignment explanation
Indices: 26187150--26187184 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26187140 CGCTGAGGTA
26187150 TTTTCAATTTCTG-TTT
1 TTTTCAATTTCTGCTTT
26187166 TTTTCCAATTTCTGCTTT
1 TTTT-CAATTTCTGCTTT
26187184 T
1 T
26187185 CAAAATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 9 0.53
18 4 0.24
ACGTcount: A:0.11, C:0.17, G:0.06, T:0.66
Consensus pattern (17 bp):
TTTTCAATTTCTGCTTT
Found at i:26187610 original size:75 final size:76
Alignment explanation
Indices: 26187325--26187648 Score: 424
Period size: 77 Copynumber: 4.3 Consensus size: 76
26187315 GAGTTGAGCC
* * * **
26187325 TTTT-AATTTCTGTTTTTTAAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTGCTCAC
1 TTTTCAATTTCTGCTTTTCAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC
*
26187388 GTGCTGAGCTA
66 ATGCTGAGCTA
* **
26187399 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTGCTTTTC-AAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
*
26187464 CGTGCTGAGCTA
65 CATGCTGAGCTA
* * *
26187476 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTCTGCTTTTC-AAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
* *
26187541 CACGCTGAGGC-G
65 CATGCTGA-GCTA
26187553 TTTTCAATTTCTGCTTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC
1 TTTTCAATTTCTGCTTTTCAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC
* *
26187617 ATGCTGAGGTC
66 ATGCTGAGCTA
26187628 TTTTCAATTTCTG-TTCTTCAA
1 TTTTCAATTTCTGCTT-TTCAA
26187649 TTTCTGTTCG
Statistics
Matches: 227, Mismatches: 17, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
74 7 0.03
75 76 0.33
76 6 0.03
77 136 0.60
78 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (76 bp):
TTTTCAATTTCTGCTTTTCAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC
ATGCTGAGCTA
Found at i:26187632 original size:152 final size:154
Alignment explanation
Indices: 26187343--26187856 Score: 590
Period size: 152 Copynumber: 3.3 Consensus size: 154
26187333 TCTGTTTTTT
* ** * **
26187343 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGA-GCTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGC-ATTTTCAAT
* ** *
26187407 TTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGA
65 TTCTGCTTTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGA
* *
26187472 GCTATTTTCAATTTCT-ACTTTT-CAA
128 GGTATTTTCAATTTCTAACTTTTAAAA
* * * *
26187497 AAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGCGTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGCATTTTCAATT
26187562 TCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGT
66 TCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGT
*
26187627 CTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAA
131 ATTTTCAA----T-TTC-T-AA---CT-TT--T-AAAA
* *
26187665 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTAATTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGCATTTTCAATT
* * *
26187728 TCTG-TTTTCAAAATTCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGT
66 TCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGT
***
26187792 ATTTTCAATTTCTGTTTTTTAAAAA
131 ATTTTCAATTTCTAACTTTT-AAAA
*
26187817 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
26187857 ATTACACACT
Statistics
Matches: 313, Mismatches: 30, Indels: 36
0.83 0.08 0.09
Matches are distributed among these distances:
152 99 0.32
153 3 0.01
154 65 0.21
155 3 0.01
156 1 0.00
157 3 0.01
158 1 0.00
159 1 0.00
160 4 0.01
161 1 0.00
163 2 0.01
164 2 0.01
165 64 0.20
166 24 0.08
168 40 0.13
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (154 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGCATTTTCAATT
TCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGT
ATTTTCAATTTCTAACTTTTAAAA
Found at i:26187649 original size:14 final size:14
Alignment explanation
Indices: 26187630--26187657 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26187620 CTGAGGTCTT
26187630 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
26187644 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
26187658 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:26187773 original size:165 final size:167
Alignment explanation
Indices: 26187495--26187807 Score: 513
Period size: 165 Copynumber: 1.9 Consensus size: 167
26187485 TCTACTTTTC
* * * **
26187495 AAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGCGTTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCTGAGGCAATTTCAA
26187560 TTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAG
65 TTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAG
*
26187625 GTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
130 GTATTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
*
26187663 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGCAATTTCAAT
* * *
26187727 TTCTG-TTTTCAAAATTCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGG
66 TTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGG
26187791 TATTTTCAATTTCTGTT
131 TATTTTCAATTTCTGTT
26187808 TTTTAAAAAA
Statistics
Matches: 135, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
165 72 0.53
166 23 0.17
168 40 0.30
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (167 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGCAATTTCAAT
TTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGG
TATTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
Found at i:26187841 original size:80 final size:77
Alignment explanation
Indices: 26187644--26187856 Score: 276
Period size: 72 Copynumber: 2.8 Consensus size: 77
26187634 ATTTCTGTTC
**
26187644 TTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTCAATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
26187709 CGCTGAGGTAAT
66 CGCTGAGGTAAT
* * *
26187721 TTCAATTTCTG-TTTT----CAAAATTCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTC
1 TTCAATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---
* *
26187780 ACATGCTGAGGTATT
63 ACACGCTGAGGTAAT
*
26187795 TTCAATTTCTGTTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TTCAATTTCTG-TTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
26187857 ATTACACACT
Statistics
Matches: 115, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
71 2 0.02
72 36 0.31
74 24 0.21
76 6 0.05
77 11 0.10
80 35 0.30
81 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (77 bp):
TTCAATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTAAT
Found at i:26187873 original size:80 final size:78
Alignment explanation
Indices: 26187644--26187876 Score: 282
Period size: 80 Copynumber: 3.0 Consensus size: 78
26187634 ATTTCTGTTC
** *
26187644 TTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GAC
1 TTCAATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTAC
* *
26187708 ACGCTGAGGTAAT
66 ACACTGAGGTATT
* * * *
26187721 TTCAATTTCTG-TTTT----CAAAATTCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTT-C
1 TTCAATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTAC
26187780 ACATGCTGAGGTATT
66 ACA--CTGAGGTATT
*
26187795 TTCAATTTCTGTTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATT
1 TTCAATTTCTG-TTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-TT
*
26187860 ACACACTGTGGTATT
64 ACACACTGAGGTATT
26187875 TT
1 TT
26187877 TTTCAATTCA
Statistics
Matches: 130, Mismatches: 15, Indels: 19
0.79 0.09 0.12
Matches are distributed among these distances:
72 40 0.31
74 20 0.15
76 6 0.05
77 11 0.08
80 47 0.36
81 2 0.02
82 4 0.03
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.34
Consensus pattern (78 bp):
TTCAATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTAC
ACACTGAGGTATT
Found at i:26188182 original size:73 final size:72
Alignment explanation
Indices: 26188002--26188284 Score: 331
Period size: 73 Copynumber: 3.9 Consensus size: 72
26187992 CTACTTTTTC
* * *
26188002 AAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA-TTTT
*
26188067 GTGTTTTC-
65 GT-TTATCA
** *
26188075 -ATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTC
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTT-
*
26188139 GTTTGTCA
65 GTTTATCA
* *
26188147 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGGTTTT-AATTTA
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTCAATTT-
*
26188211 TGTTCATCA
64 TGTTTATCA
* * * *
26188220 AAAATTAGCTCATGTTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
26188284 T
63 T
26188285 CTGGTTTTCA
Statistics
Matches: 183, Mismatches: 18, Indels: 16
0.84 0.08 0.07
Matches are distributed among these distances:
71 8 0.04
72 57 0.31
73 92 0.50
74 9 0.05
75 17 0.09
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (72 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTG
TTTATCA
Found at i:26188294 original size:14 final size:14
Alignment explanation
Indices: 26188275--26188309 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
26188265 CGCTGAGGTA
26188275 TTTTCAATTTCTGG
1 TTTTCAATTTCTGG
*
26188289 TTTTCAATTTCTGT
1 TTTTCAATTTCTGG
26188303 TTTTCAA
1 TTTTCAA
26188310 AAATCGACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.14, G:0.09, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:26188514 original size:77 final size:74
Alignment explanation
Indices: 26188289--26188495 Score: 299
Period size: 77 Copynumber: 2.8 Consensus size: 74
26188279 CAATTTCTGG
* * *
26188289 TTTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
26188354 CTGAGGTA-
66 CTGAGGTAT
* * **
26188362 ATTTCAATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTTTAAATTTCTGTT-TT---TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
26188427 CACGCTGAGGTAT
62 CACGCTGAGGTAT
*
26188440 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
26188496 TGGGTTCACA
Statistics
Matches: 119, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
73 14 0.12
74 38 0.32
77 54 0.45
78 13 0.11
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (74 bp):
TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTAT
Found at i:26189219 original size:30 final size:30
Alignment explanation
Indices: 26189183--26189296 Score: 176
Period size: 30 Copynumber: 3.8 Consensus size: 30
26189173 TAAAAAAAAC
*
26189183 CTAGCCACTCCTTTTCCACCACCAACTCCA
1 CTAGCCACACCTTTTCCACCACCAACTCCA
26189213 CTAGCCACACCTTTTCCACCACCAACTCCA
1 CTAGCCACACCTTTTCCACCACCAACTCCA
*
26189243 CTAGCCAC-TCTTTTCCCACCACCAACTCCA
1 CTAGCCACACCTTTT-CCACCACCAACTCCA
* *
26189273 CTAGCCACACATTCTCCACCACCA
1 CTAGCCACACCTTTTCCACCACCA
26189297 CTTGTACCTA
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
29 5 0.06
30 69 0.90
31 3 0.04
ACGTcount: A:0.25, C:0.50, G:0.04, T:0.21
Consensus pattern (30 bp):
CTAGCCACACCTTTTCCACCACCAACTCCA
Found at i:26189276 original size:60 final size:60
Alignment explanation
Indices: 26189183--26189296 Score: 194
Period size: 60 Copynumber: 1.9 Consensus size: 60
26189173 TAAAAAAAAC
* *
26189183 CTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCA
1 CTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACATTCTCCACCACCAACTCCA
26189243 CTAGCCACT-CTTTTCCCACCACCAACTCCACTAGCCACACATTCTCCACCACCA
1 CTAGCCACTCCTTTT-CCACCACCAACTCCACTAGCCACACATTCTCCACCACCA
26189297 CTTGTACCTA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
59 5 0.10
60 46 0.90
ACGTcount: A:0.25, C:0.50, G:0.04, T:0.21
Consensus pattern (60 bp):
CTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACATTCTCCACCACCAACTCCA
Found at i:26189404 original size:26 final size:27
Alignment explanation
Indices: 26189374--26189425 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
26189364 TATTTTGTAT
26189374 AGGGGGA-TTTTTTTGGAGAGTTTTGG
1 AGGGGGATTTTTTTTGGAGAGTTTTGG
26189400 AGGGGGATTTTTTTTTGGAGAGTTTT
1 AGGGGGA-TTTTTTTTGGAGAGTTTT
26189426 TGGGAGAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 7 0.29
28 17 0.71
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.46
Consensus pattern (27 bp):
AGGGGGATTTTTTTTGGAGAGTTTTGG
Found at i:26189927 original size:16 final size:17
Alignment explanation
Indices: 26189888--26189952 Score: 66
Period size: 16 Copynumber: 3.9 Consensus size: 17
26189878 TACGTATATG
*
26189888 TATATTTTATACTATTT-
1 TATATTATATA-TATTTA
*
26189905 TAT-TTATATATCTTTA
1 TATATTATATATATTTA
26189921 -ATATTATAT-TATTTA
1 TATATTATATATATTTA
26189936 TATATATATATATATTT
1 TATAT-TATATATATTT
26189953 TTCTACATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
15 11 0.28
16 16 0.40
17 8 0.20
18 5 0.12
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
TATATTATATATATTTA
Found at i:26189937 original size:25 final size:23
Alignment explanation
Indices: 26189888--26190028 Score: 75
Period size: 25 Copynumber: 6.3 Consensus size: 23
26189878 TACGTATATG
*
26189888 TATATTTTATACTATTTTATTTA
1 TATATTTTATACTATATTATTTA
*
26189911 TATATCTTTAATATTATATTATTTA
1 TATAT-TTT-ATACTATATTATTTA
* *
26189936 TATA-TATATA-TATATT-TTTC
1 TATATTTTATACTATATTATTTA
* * *
26189956 TACATGTTAT-C----TTATGTA
1 TATATTTTATACTATATTATTTA
* *
26189974 TATATCTTA-ACTATATTATGTA
1 TATATTTTATACTATATTATTTA
* *
26189996 TATATTTTTAACACTATATTATGTA
1 TATA-TTTT-ATACTATATTATTTA
*
26190021 CATATTTT
1 TATATTTT
26190029 TAATATTATC
Statistics
Matches: 92, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
17 2 0.02
18 10 0.11
20 6 0.07
21 9 0.10
22 14 0.15
23 10 0.11
24 8 0.09
25 33 0.36
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (23 bp):
TATATTTTATACTATATTATTTA
Found at i:26189995 original size:22 final size:24
Alignment explanation
Indices: 26189967--26190025 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 24
26189957 ACATGTTATC
26189967 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
*
26189989 TTATGTATATATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
26190014 TTATGTACATAT
1 TTATGTATATAT
26190026 TTTTAATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 11 0.34
23 3 0.09
24 2 0.06
25 16 0.50
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:26190029 original size:25 final size:25
Alignment explanation
Indices: 26189983--26190031 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
26189973 ATATATCTTA
*
26189983 ACTATATTATGTATATATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
26190008 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
26190032 TATTATCACG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:26190206 original size:16 final size:15
Alignment explanation
Indices: 26190182--26190229 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
26190172 TAATTATTAT
*
26190182 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
26190198 TATTTTAATATTTTA
1 TATTTTAATATTTTA
26190213 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
26190229 T
1 T
26190230 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:26190217 original size:7 final size:8
Alignment explanation
Indices: 26190182--26190233 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
26190172 TAATTATTAT
*
26190182 TATTCTAA
1 TATTTTAA
*
26190190 TATTTTGA
1 TATTTTAA
26190198 TATTTTAA
1 TATTTTAA
26190206 TATTTT-A
1 TATTTTAA
26190213 TATTTTATA
1 TATTTTA-A
*
26190222 TATTTTAT
1 TATTTTAA
26190230 TATT
1 TATT
26190234 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:26191126 original size:35 final size:34
Alignment explanation
Indices: 26191046--26191126 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 34
26191036 ATATATGTGG
*
26191046 ATATATATGTATGTGAATTGTAAAATATACGAAAA
1 ATATATATGTATGTGAATTATAAAATATAC-AAAA
*
26191081 ATATGTATGTATGTACGAATTATAAAATATA-AAAA
1 ATATATATGTATGT--GAATTATAAAATATACAAAA
* *
26191116 CTATACATGTA
1 ATATATATGTA
26191127 AAACAGGGGT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
35 25 0.64
37 14 0.36
ACGTcount: A:0.48, C:0.05, G:0.12, T:0.35
Consensus pattern (34 bp):
ATATATATGTATGTGAATTATAAAATATACAAAA
Found at i:26191369 original size:5 final size:6
Alignment explanation
Indices: 26191354--26191387 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
26191344 ATTTGAAGTA
26191354 AAAAAT AAAAAT AAAAAT AACAAAT AACAAAT AA
1 AAAAAT AAAAAT AAAAAT AA-AAAT AA-AAAT AA
26191388 TATAAGCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 14 0.52
7 13 0.48
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:26192081 original size:18 final size:18
Alignment explanation
Indices: 26192058--26192100 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
26192048 ACTCAATCCA
**
26192058 AACCCAAGTATTCAACCC
1 AACCCAAGTACCCAACCC
*
26192076 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
26192094 AACCCAA
1 AACCCAA
26192101 TCATAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.44, G:0.02, T:0.12
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:26192218 original size:9 final size:9
Alignment explanation
Indices: 26192199--26192243 Score: 72
Period size: 9 Copynumber: 4.9 Consensus size: 9
26192189 ATTATGTAGT
26192199 GGTTCAATTC
1 GGTT-AATTC
26192209 GGTTAATTC
1 GGTTAATTC
*
26192218 GGGTAATTC
1 GGTTAATTC
26192227 GGTTAATTC
1 GGTTAATTC
26192236 GGTTAATT
1 GGTTAATT
26192244 TTTAACCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
9 29 0.88
10 4 0.12
ACGTcount: A:0.22, C:0.11, G:0.24, T:0.42
Consensus pattern (9 bp):
GGTTAATTC
Found at i:26192305 original size:13 final size:13
Alignment explanation
Indices: 26192287--26192314 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26192277 GTTAATTCGG
26192287 TTAACCGAAAAAA
1 TTAACCGAAAAAA
26192300 TTAACCGAAAAAA
1 TTAACCGAAAAAA
26192313 TT
1 TT
26192315 TCGGTTCGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
TTAACCGAAAAAA
Found at i:26192561 original size:8 final size:8
Alignment explanation
Indices: 26192548--26192574 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
26192538 TAAGCCCAAT
26192548 TTTTTTTA
1 TTTTTTTA
26192556 TTTTTTTA
1 TTTTTTTA
26192564 TTTTTTTA
1 TTTTTTTA
26192572 TTT
1 TTT
26192575 CTTTCCCCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTTA
Found at i:26193673 original size:31 final size:31
Alignment explanation
Indices: 26193638--26193698 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
26193628 TCAAATATCT
*
26193638 TATTTAAACAACAAATTCATTATGTTCTTCG
1 TATTTAAACAACAAATACATTATGTTCTTCG
* * *
26193669 TATTTAGACAGCAGATACATTATGTTCTTC
1 TATTTAAACAACAAATACATTATGTTCTTC
26193699 AATTGGAATC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (31 bp):
TATTTAAACAACAAATACATTATGTTCTTCG
Found at i:26193721 original size:16 final size:16
Alignment explanation
Indices: 26193700--26193731 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26193690 ATGTTCTTCA
26193700 ATTGGAATCCTTCTTT
1 ATTGGAATCCTTCTTT
*
26193716 ATTGGAATCTTTCTTT
1 ATTGGAATCCTTCTTT
26193732 TGACACAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (16 bp):
ATTGGAATCCTTCTTT
Found at i:26196302 original size:96 final size:96
Alignment explanation
Indices: 26196180--26196376 Score: 306
Period size: 96 Copynumber: 2.1 Consensus size: 96
26196170 ATTTTCCGAG
* * * * *
26196180 AATCTCTGTTTAGTTTCTTGGAAAACTTTTAAAGCAGCTGAATCATCCTACTCGAATGCTTTATC
1 AATCTCTATTTAGTTTCTTGGAAAACTTTTAAAGCAGCCGAATCATCCCACTCAAATACTTTATC
*
26196245 AGTCTTAAACAAATTATTCTTCGCATAAACA
66 AGTCTTAAACAAATTATTCTTCACATAAACA
26196276 AATCTCTATTTAGTTTCTT-GAGAAACTTTTAAAGCAGCCGAATCATCCCACTCAAATACTTTAT
1 AATCTCTATTTAGTTTCTTGGA-AAACTTTTAAAGCAGCCGAATCATCCCACTCAAATACTTTAT
* *
26196340 TAGTCTTAAACAAATTATTCTTCACATCAACA
65 CAGTCTTAAACAAATTATTCTTCACATAAACA
26196372 AATCT
1 AATCT
26196377 TTTCCATTTA
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
95 2 0.02
96 90 0.98
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (96 bp):
AATCTCTATTTAGTTTCTTGGAAAACTTTTAAAGCAGCCGAATCATCCCACTCAAATACTTTATC
AGTCTTAAACAAATTATTCTTCACATAAACA
Found at i:26196408 original size:12 final size:12
Alignment explanation
Indices: 26196391--26196415 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26196381 CATTTATCAG
26196391 TCTTAAACAAAT
1 TCTTAAACAAAT
26196403 TCTTAAACAAAT
1 TCTTAAACAAAT
26196415 T
1 T
26196416 ATTCTTCAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (12 bp):
TCTTAAACAAAT
Found at i:26201104 original size:30 final size:30
Alignment explanation
Indices: 26201068--26201130 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
26201058 ACTTAACAAG
26201068 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
26201098 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
26201128 CAA
1 CAA
26201131 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:26209226 original size:4 final size:4
Alignment explanation
Indices: 26209217--26209286 Score: 140
Period size: 4 Copynumber: 17.5 Consensus size: 4
26209207 AATTAAATGC
26209217 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
26209265 ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT AT
26209287 ATAACAAGCA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 66 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:26214112 original size:3 final size:3
Alignment explanation
Indices: 26214104--26214137 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
26214094 TGCGATGTGT
*
26214104 TTA TTA TTA TCA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26214138 CATCGAACTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:26214618 original size:8 final size:8
Alignment explanation
Indices: 26214605--26214657 Score: 70
Period size: 8 Copynumber: 6.4 Consensus size: 8
26214595 TTTTAGTTGT
*
26214605 TTTATATA
1 TTTATAAA
*
26214613 TTTATATAT
1 TTTATA-AA
26214622 TTTTATAAA
1 T-TTATAAA
26214631 TTTATAAA
1 TTTATAAA
26214639 TTTATAAA
1 TTTATAAA
26214647 TTTATAAA
1 TTTATAAA
26214655 TTT
1 TTT
26214658 TAGTTCTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
8 32 0.80
9 3 0.08
10 5 0.12
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TTTATAAA
Found at i:26215994 original size:61 final size:61
Alignment explanation
Indices: 26215919--26216037 Score: 229
Period size: 61 Copynumber: 2.0 Consensus size: 61
26215909 TTTGCGCAAT
*
26215919 AAATATTTAGTTTCTTATTCTCAATTATGTGTATTTAATTCTTGATTTGATGTTTCTAATA
1 AAATATTTAGTTTCTTATTCTCAATTATGCGTATTTAATTCTTGATTTGATGTTTCTAATA
26215980 AAATATTTAGTTTCTTATTCTCAATTATGCGTATTTAATTCTTGATTTGATGTTTCTA
1 AAATATTTAGTTTCTTATTCTCAATTATGCGTATTTAATTCTTGATTTGATGTTTCTA
26216038 GATTATTAAT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.27, C:0.09, G:0.10, T:0.54
Consensus pattern (61 bp):
AAATATTTAGTTTCTTATTCTCAATTATGCGTATTTAATTCTTGATTTGATGTTTCTAATA
Found at i:26222076 original size:41 final size:41
Alignment explanation
Indices: 26222025--26222211 Score: 191
Period size: 41 Copynumber: 4.6 Consensus size: 41
26222015 TTTAAACAGA
* * ** *
26222025 TTCACTGGCACTTCA-CCTGATAGGCTTATAGTTTAATTCCG
1 TTCACCGGCACTT-AGCCTGCTAGGCTTATAGCCTAATTCAG
* * *
26222066 TTCATCGGCACTTAGCCTGCTAGGCCTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTAATTCAG
* * *
26222107 TTCACCGGCACTTAGCCTGCTAGGCTTGTAGCCTGATTCAA
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTAATTCAG
* * * *
26222148 CTCACCGGCACTTAGCCTGCT-GGACGTATAGTCC-GATTCAA
1 TTCACCGGCACTTAGCCTGCTAGG-CTTATAG-CCTAATTCAG
26222189 TTCACCGGCACTTAGCCTGCTAG
1 TTCACCGGCACTTAGCCTGCTAG
26222212 ACGTATAGTC
Statistics
Matches: 126, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
40 3 0.02
41 120 0.95
42 3 0.02
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.29
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTAATTCAG
Found at i:26222234 original size:41 final size:41
Alignment explanation
Indices: 26222066--26222224 Score: 212
Period size: 41 Copynumber: 3.9 Consensus size: 41
26222056 TTTAATTCCG
* * * *
26222066 TTCATCGGCACTTAGCCTGCTAGGCCTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGACGTATAGCCTGATTCAA
* * *
26222107 TTCACCGGCACTTAGCCTGCTAGGCTTGTAGCCTGATTCAA
1 TTCACCGGCACTTAGCCTGCTAGACGTATAGCCTGATTCAA
* *
26222148 CTCACCGGCACTTAGCCTGCTGGACGTATAGTCC-GATTCAA
1 TTCACCGGCACTTAGCCTGCTAGACGTATAG-CCTGATTCAA
*
26222189 TTCACCGGCACTTAGCCTGCTAGACGTATAGTCTGA
1 TTCACCGGCACTTAGCCTGCTAGACGTATAGCCTGA
26222225 ATAATTTCAC
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
40 1 0.01
41 101 0.97
42 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.28
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGCTAGACGTATAGCCTGATTCAA
Found at i:26234271 original size:3 final size:3
Alignment explanation
Indices: 26234263--26234324 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
26234253 ATGAACAAAG
* * * *
26234263 ATA ATA ATA ATG ATA CA-A ATA ACA AT- ATAA AGA ACA ATA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA
26234308 ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA AT
26234325 TGGAATACAT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
2 3 0.06
3 43 0.90
4 2 0.04
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:26236713 original size:110 final size:105
Alignment explanation
Indices: 26236580--26236773 Score: 282
Period size: 110 Copynumber: 1.8 Consensus size: 105
26236570 ATATAATTAA
*
26236580 AATTTTAAATTTAAAAATAAAATAACTAAATTATTAAAAATAAAAATAG-AGGATCAAAATTCTA
1 AATTTTAAATTTAAAAATAAAATAACTAAATTACTAAAAATAAAAATAGAAGGATC-AAATTCTA
26236644 AATTACGAAAGAGAAATTATTTTATGAGTTAACCCTTGGACTTT
65 AATT---AAAGAGAAATTATTTTATGAGTTAACCCTTGGACTTT
* * *
26236688 AATTTTGAAATTTAAAAAATAAAATAACTAAATTCCTAAAAATAAAAATAGAATGTTCAAATTCT
1 AATTTT-AAATTT-AAAAATAAAATAACTAAATTACTAAAAATAAAAATAGAAGGATCAAATTCT
*
26236753 AAATTAAGGAGAAATTATTTT
64 AAATTAAAGAGAAATTATTTT
26236774 TACGAACCCT
Statistics
Matches: 78, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
107 15 0.19
108 6 0.08
109 6 0.08
110 47 0.60
111 4 0.05
ACGTcount: A:0.52, C:0.07, G:0.08, T:0.34
Consensus pattern (105 bp):
AATTTTAAATTTAAAAATAAAATAACTAAATTACTAAAAATAAAAATAGAAGGATCAAATTCTAA
ATTAAAGAGAAATTATTTTATGAGTTAACCCTTGGACTTT
Found at i:26237072 original size:21 final size:22
Alignment explanation
Indices: 26237022--26237072 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
26237012 CATGAACCTC
* *
26237022 GAAT-CCAAAACCTTAAATATT
1 GAATCCCAAAACCCTAAACATT
*
26237043 GAA-CTCAAAACCCT-AACATT
1 GAATCCCAAAACCCTAAACATT
26237063 GAATCCCAAA
1 GAATCCCAAA
26237073 CTCCAAACCC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.47, C:0.25, G:0.06, T:0.22
Consensus pattern (22 bp):
GAATCCCAAAACCCTAAACATT
Found at i:26240648 original size:19 final size:20
Alignment explanation
Indices: 26240626--26240664 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26240616 TAATTTGGTC
26240626 ATTTC-CTTTTAATCCCAAA
1 ATTTCTCTTTTAATCCCAAA
*
26240645 ATTTCTGTTTTAATCCCAAA
1 ATTTCTCTTTTAATCCCAAA
26240665 TTAGCCCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.31, C:0.23, G:0.03, T:0.44
Consensus pattern (20 bp):
ATTTCTCTTTTAATCCCAAA
Found at i:26243300 original size:14 final size:15
Alignment explanation
Indices: 26243269--26243301 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26243259 TTAAAATTTG
*
26243269 TTTAGTTAAAATAGT
1 TTTAGGTAAAATAGT
26243284 TTTAGGTAAAATA-T
1 TTTAGGTAAAATAGT
26243298 TTTA
1 TTTA
26243302 TAACCAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (15 bp):
TTTAGGTAAAATAGT
Found at i:26246378 original size:144 final size:144
Alignment explanation
Indices: 26245996--26246366 Score: 697
Period size: 144 Copynumber: 2.6 Consensus size: 144
26245986 TAAAGACGAA
* * * *
26245996 GGTATAGAACCAGATAACCCGTTTTCTTGCAATTCAAGGCTGCTCAATCCTTTCAGTACCCCAAT
1 GGTATAGAACCAGATAACCTGTTATATTGCAATTCAAGGCTGCTCAATCCTTTCAGTTCCCCAAT
26246061 TCCACGAGGGATTTTCCCTGCAAGATGATTATGAGCCATGTTTATGACAGTGATAGAACGACAAG
66 TCCACGAGGGATTTTCCCTGCAAGATGATTATGAGCCATGTTTATGACAGTGATAGAACGACAAG
26246126 AACTTAACGACTCC
131 AACTTAACGACTCC
26246140 GGTATAGAACCAGATAACCTGTTATATTGCAATTCAAGGCTGCTCAATCCTTTCAGTTCCCCAAT
1 GGTATAGAACCAGATAACCTGTTATATTGCAATTCAAGGCTGCTCAATCCTTTCAGTTCCCCAAT
26246205 TCCACGAGGGATTTTCCCTGCAAGATGATTATGAGCCATGTTTATGACAGTGATAGAACGACAAG
66 TCCACGAGGGATTTTCCCTGCAAGATGATTATGAGCCATGTTTATGACAGTGATAGAACGACAAG
26246270 AACTTAACGACTCC
131 AACTTAACGACTCC
*
26246284 GGTATAGAACCAGATAACCTGTTATATTGCAATTCAAGGCTGCTCAATCTTTTCAGTTCCCCAAT
1 GGTATAGAACCAGATAACCTGTTATATTGCAATTCAAGGCTGCTCAATCCTTTCAGTTCCCCAAT
26246349 TCCACGAGGGATTTTCCC
66 TCCACGAGGGATTTTCCC
26246367 CGAAAACTGA
Statistics
Matches: 222, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
144 222 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (144 bp):
GGTATAGAACCAGATAACCTGTTATATTGCAATTCAAGGCTGCTCAATCCTTTCAGTTCCCCAAT
TCCACGAGGGATTTTCCCTGCAAGATGATTATGAGCCATGTTTATGACAGTGATAGAACGACAAG
AACTTAACGACTCC
Found at i:26249507 original size:6 final size:7
Alignment explanation
Indices: 26249479--26249506 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
26249469 ACTTTTAAAA
26249479 TATTTTT
1 TATTTTT
26249486 TATTTTT
1 TATTTTT
26249493 TATTTTT
1 TATTTTT
26249500 TATTTTT
1 TATTTTT
26249507 AAAATAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TATTTTT
Found at i:26252470 original size:41 final size:41
Alignment explanation
Indices: 26252413--26252493 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
26252403 TGTCATTTCA
26252413 CTATCGCTTTTTATAACTTACTCATTTTTGCCCCCATTATC
1 CTATCGCTTTTTATAACTTACTCATTTTTGCCCCCATTATC
26252454 CTATCGCTTTTTATAACTTACTCATTTTTGCCCCCATTAT
1 CTATCGCTTTTTATAACTTACTCATTTTTGCCCCCATTAT
26252494 TCGACAATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.20, C:0.28, G:0.05, T:0.47
Consensus pattern (41 bp):
CTATCGCTTTTTATAACTTACTCATTTTTGCCCCCATTATC
Found at i:26260947 original size:60 final size:60
Alignment explanation
Indices: 26260852--26260971 Score: 186
Period size: 60 Copynumber: 2.0 Consensus size: 60
26260842 TCCGATTCTC
**
26260852 GTCGATTCCGGGATGATCAAGCATAAGGATGATGCAGCCACATCGAATGAGTCTTAGCAT
1 GTCGATTCCGGGATGATCAAGCATAAGGATGATGCAGCCACATCGAACAAGTCTTAGCAT
* * * *
26260912 GTCGATTCTGGGATGATCAAGTATAAGGATTATGCAGCCTCATCGAACAAGTCTTAGCAT
1 GTCGATTCCGGGATGATCAAGCATAAGGATGATGCAGCCACATCGAACAAGTCTTAGCAT
26260972 TTTGGATGTT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (60 bp):
GTCGATTCCGGGATGATCAAGCATAAGGATGATGCAGCCACATCGAACAAGTCTTAGCAT
Found at i:26261725 original size:16 final size:16
Alignment explanation
Indices: 26261704--26261741 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
26261694 TTTGATTCGC
26261704 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
26261720 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
26261736 CGTAAT
1 TGTAAT
26261742 AGGTAATTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.37, C:0.03, G:0.34, T:0.26
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:26261810 original size:44 final size:46
Alignment explanation
Indices: 26261723--26261815 Score: 163
Period size: 44 Copynumber: 2.1 Consensus size: 46
26261713 ATAGAGGTGT
*
26261723 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATGG
26261769 AATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATGG
26261813 AAT
1 AAT
26261816 AGAGGTGTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 24 0.52
45 3 0.07
46 19 0.41
ACGTcount: A:0.28, C:0.04, G:0.31, T:0.37
Consensus pattern (46 bp):
AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATGG
Found at i:26261811 original size:39 final size:44
Alignment explanation
Indices: 26261723--26261828 Score: 141
Period size: 39 Copynumber: 2.5 Consensus size: 44
26261713 ATAGAGGTGT
*
26261723 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTT--ATGG
26261769 AATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGG-T-T-G
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTATGG
*
26261808 AATGGAATAGAGGTGTAATAG
1 AATGGAATAGAGGCGTAATAG
26261829 CATAAGGAAA
Statistics
Matches: 57, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
39 19 0.33
40 2 0.04
43 1 0.02
44 13 0.23
45 3 0.05
46 19 0.33
ACGTcount: A:0.29, C:0.04, G:0.32, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTATGG
Done.