Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 72 of 208
Found at i:26262109 original size:64 final size:63
Alignment explanation
Indices: 26262022--26262190 Score: 173
Period size: 54 Copynumber: 2.8 Consensus size: 63
26262012 TAGTATTAAA
* *
26262022 TATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAAT
1 TATTATTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTCAAAATAAT
* * *
26262085 TATTATTAAATAT-AATTTA--ATAA--A-AATATATAAT--T-T--AATAAAATTCAATATAAT
1 TATTATT--ATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTCAAAATAAT
* *
26262139 TATTCTTATATGAATTTACTAAAATCATATTATATAATACTATAAAA-ATAAT
1 TATTATTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAAT
26262191 ATGTAATCTA
Statistics
Matches: 84, Mismatches: 9, Indels: 27
0.70 0.08 0.22
Matches are distributed among these distances:
52 4 0.05
53 6 0.07
54 21 0.25
55 3 0.04
56 1 0.01
57 2 0.02
58 9 0.11
59 10 0.12
60 2 0.02
61 1 0.01
62 7 0.08
63 8 0.10
64 6 0.07
65 4 0.05
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.42
Consensus pattern (63 bp):
TATTATTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTCAAAATAAT
Found at i:26262126 original size:59 final size:60
Alignment explanation
Indices: 26261960--26262128 Score: 166
Period size: 59 Copynumber: 2.8 Consensus size: 60
26261950 ATATTTCAAC
* * *
26261960 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAGAATTCTTAGTATTAA
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATA-AAATCATAATATTAA
* * * * ** * * *
26262021 AT-ATTCTTATATGAATTTACTAAAATCATAATATATAATACT-ATAAAAT-ATAAT-TTAAA
1 ATAATTATTAT-TAAATATAATTTAATAAAAATATATAAT-TTAATAAAATCATAATATT-AA
26262080 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
26262129 TCAATATAAT
Statistics
Matches: 82, Mismatches: 21, Indels: 12
0.71 0.18 0.10
Matches are distributed among these distances:
58 3 0.04
59 35 0.43
60 17 0.21
61 26 0.32
62 1 0.01
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.43
Consensus pattern (60 bp):
ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATCATAATATTAA
Found at i:26262129 original size:10 final size:10
Alignment explanation
Indices: 26262067--26262139 Score: 50
Period size: 10 Copynumber: 7.9 Consensus size: 10
26262057 AATACTATAA
26262067 AATATAATTT
1 AATATAATTT
*
26262077 AAAATAA-TT
1 AATATAATTT
*
26262086 -AT-T-ATTA
1 AATATAATTT
26262093 AATATAATTT
1 AATATAATTT
**
26262103 AATA-AAAAT
1 AATATAATTT
26262112 -ATATAATTT
1 AATATAATTT
* *
26262121 AATAAAATTC
1 AATATAATTT
26262131 AATATAATT
1 AATATAATT
26262140 ATTCTTATAT
Statistics
Matches: 46, Mismatches: 11, Indels: 12
0.67 0.16 0.17
Matches are distributed among these distances:
6 1 0.02
7 2 0.04
8 6 0.13
9 9 0.20
10 28 0.61
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (10 bp):
AATATAATTT
Found at i:26262179 original size:117 final size:118
Alignment explanation
Indices: 26261960--26262190 Score: 394
Period size: 120 Copynumber: 2.0 Consensus size: 118
26261950 ATATTTCAAC
* *
26261960 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAGAATTCTTAGTATTAAATAT
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTC-TAATATTAAATAT
26262025 TCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAA
65 TCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAA-ATAATTTAAA
*
26262080 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTC-AATA-TAATTATT
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTAATATTAAATATT
*
26262143 CTTATATGAATTTACTAAAATCATATTATATAATACTATAAAAATAAT
66 CTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAATAAT
26262191 ATGTAATCTA
Statistics
Matches: 107, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
116 5 0.05
117 49 0.46
118 3 0.03
120 50 0.47
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (118 bp):
ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTAATATTAAATATT
CTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAATAATTTAAA
Found at i:26266485 original size:152 final size:154
Alignment explanation
Indices: 26266223--26266500 Score: 407
Period size: 152 Copynumber: 1.8 Consensus size: 154
26266213 GAGCTCAAAT
* * *** * *
26266223 GGATAAAATGCTAAAACTCAGGCTTGGCCTGGCCCGTATTAGTTTTTTATATAATTTTTAAAATA
1 GGATAAAATGCTAAAACCCAAGCTTGGCCCAACCCGCATTAATTTTTTATATAATTTTT-AAATA
*
26266288 TATATAATACATCAAAAATACTAAAAACATTAAAATAAATATTTTCCAACAAATTAAAAATGAGC
65 TATATAATACATCAAAAATACTAAAAACATTAAAACAAATATTTTCCAACAAATTAAAAATGAGC
26266353 CTAAAATTTTGCCCAAGCCCAGCCC
130 CTAAAATTTTGCCCAAGCCCAGCCC
* * *
26266378 GGATAAAATGCTAGAACCCAAGCTTGGCCCAACGCGCATTAATTTTTTATAT-ATTTTT-TATAT
1 GGATAAAATGCTAAAACCCAAGCTTGGCCCAACCCGCATTAATTTTTTATATAATTTTTAAATAT
* * *
26266441 ATATAATATATCAAAAATACTAAAAACATTAAAACAAATGTTTTCCAACAAATTGAAAAT
66 ATATAATACATCAAAAATACTAAAAACATTAAAACAAATATTTTCCAACAAATTAAAAAT
26266501 AAATTAAAAA
Statistics
Matches: 109, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
152 60 0.55
154 6 0.06
155 43 0.39
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (154 bp):
GGATAAAATGCTAAAACCCAAGCTTGGCCCAACCCGCATTAATTTTTTATATAATTTTTAAATAT
ATATAATACATCAAAAATACTAAAAACATTAAAACAAATATTTTCCAACAAATTAAAAATGAGCC
TAAAATTTTGCCCAAGCCCAGCCC
Found at i:26266692 original size:18 final size:18
Alignment explanation
Indices: 26266667--26266707 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
26266657 CAAAATAGTG
26266667 AAAAAAGAAAAAAG-AAA
1 AAAAAAGAAAAAAGTAAA
*
26266684 AAAACAAGAAAACAGTAAA
1 AAAA-AAGAAAAAAGTAAA
26266703 AAAAA
1 AAAAA
26266708 TATTTTTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 10 0.48
19 7 0.33
ACGTcount: A:0.83, C:0.05, G:0.10, T:0.02
Consensus pattern (18 bp):
AAAAAAGAAAAAAGTAAA
Found at i:26267209 original size:31 final size:31
Alignment explanation
Indices: 26267167--26267241 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
26267157 AAAATTTGTT
26267167 ATTTTAGTCACTCCAGTTAGATAAGTTGTCA
1 ATTTTAGTCACTCCAGTTAGATAAGTTGTCA
* *
26267198 ATTTTAATCACTCCCGTTAGATAAGTTGTCA
1 ATTTTAGTCACTCCAGTTAGATAAGTTGTCA
26267229 ATTTTAGTCACTC
1 ATTTTAGTCACTC
26267242 TACCGTTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (31 bp):
ATTTTAGTCACTCCAGTTAGATAAGTTGTCA
Found at i:26272685 original size:18 final size:19
Alignment explanation
Indices: 26272662--26272705 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
26272652 TATTTTTTTA
*
26272662 TTTTTTA-TTTTAAAATAT
1 TTTTTTATTTTTAAAATAG
26272680 TTTTTTATTTTTAAAATAG
1 TTTTTTATTTTTAAAATAG
26272699 TTTTTTA
1 TTTTTTA
26272706 GTGTTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTTTATTTTTAAAATAG
Found at i:26282256 original size:46 final size:46
Alignment explanation
Indices: 26282184--26282323 Score: 226
Period size: 46 Copynumber: 3.0 Consensus size: 46
26282174 ACAATGCTAT
* * *
26282184 AACTCAGTATGGTTTCCTTCACTGAAATATCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* *
26282230 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTATTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
*
26282276 AACTTAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
26282322 AA
1 AA
26282324 TTTGTCATGG
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 86 1.00
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.37
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:26288366 original size:125 final size:125
Alignment explanation
Indices: 26288140--26288418 Score: 452
Period size: 125 Copynumber: 2.2 Consensus size: 125
26288130 GCCCACGTTT
* * * *
26288140 ACGCACTTTTGCTACTGTAGGTCCT-GAAAAAATAATTTCTAGTTGACGTTTTTGAGCAAATAGT
1 ACGCGCTTTTGCTACAGTAGGTCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGT
* * * *
26288204 ATAAAATCGCTTCTAGCAGGATGCTGTTTGATAAGAATTTGTGAAATCGCGGCCTCGTGG
66 ATAAAATCGCTTCTAACAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGG
*
26288264 ACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGT
1 ACGCGCTTTTGCTACAGTAGGTCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGT
*
26288329 ATAAAATCGCTTCTAATAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGG
66 ATAAAATCGCTTCTAACAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGG
*
26288389 ACACGCTTTTGCTACAGTAGGTCCTGGAAA
1 ACGCGCTTTTGCTACAGTAGGTCCTGGAAA
26288419 TTGAGAGGAA
Statistics
Matches: 142, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
124 23 0.16
125 119 0.84
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (125 bp):
ACGCGCTTTTGCTACAGTAGGTCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGT
ATAAAATCGCTTCTAACAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGG
Found at i:26289992 original size:67 final size:67
Alignment explanation
Indices: 26289884--26290018 Score: 252
Period size: 67 Copynumber: 2.0 Consensus size: 67
26289874 TTTCCAATTC
*
26289884 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGTGGGATTACCAGTCCAGGCTAAATCCCCTG
1 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGTGGGATTACCAGTCCAAGCTAAATCCCCTG
26289949 CA
66 CA
*
26289951 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGTGGGATTACTAGTCCAAGCTAAATCCCCTG
1 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGTGGGATTACCAGTCCAAGCTAAATCCCCTG
26290016 CA
66 CA
26290018 A
1 A
26290019 TGACAATTAC
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (67 bp):
AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGTGGGATTACCAGTCCAAGCTAAATCCCCTG
CA
Found at i:26293023 original size:23 final size:23
Alignment explanation
Indices: 26292993--26293039 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
26292983 CAAACCTACA
26292993 TATTTTAAGCTTGCCCATATTAT
1 TATTTTAAGCTTGCCCATATTAT
26293016 TATTTTAAGCTTGCCCATATTAT
1 TATTTTAAGCTTGCCCATATTAT
26293039 T
1 T
26293040 TTTAATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.09, T:0.49
Consensus pattern (23 bp):
TATTTTAAGCTTGCCCATATTAT
Found at i:26296297 original size:24 final size:24
Alignment explanation
Indices: 26296250--26296297 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26296240 TTTTTAATAA
* *
26296250 TTTAATTTTTTTCTTTTATGTTCT
1 TTTAATCTTTTTCTTTTATATTCT
*
26296274 TTTAATCTTTTTCTTTTTTATTCT
1 TTTAATCTTTTTCTTTTATATTCT
26296298 CTTCTGCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.12, C:0.10, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTAATCTTTTTCTTTTATATTCT
Found at i:26296814 original size:14 final size:14
Alignment explanation
Indices: 26296795--26296834 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
26296785 TTGATTGGCA
26296795 GTAAAATGTTTTCT
1 GTAAAATGTTTTCT
*
26296809 GTAAAATGATTTCT
1 GTAAAATGTTTTCT
*
26296823 GAAAAATGTTTT
1 GTAAAATGTTTT
26296835 ACTTTTCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (14 bp):
GTAAAATGTTTTCT
Found at i:26299744 original size:21 final size:21
Alignment explanation
Indices: 26299718--26299758 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26299708 ATCTGCTCAA
* *
26299718 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
26299739 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
26299759 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:26302853 original size:14 final size:14
Alignment explanation
Indices: 26302834--26302864 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
26302824 GTCATTTAGG
26302834 CCAACCAAACTGGC
1 CCAACCAAACTGGC
26302848 CCAACCAAACTGGC
1 CCAACCAAACTGGC
26302862 CCA
1 CCA
26302865 GTGATTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.45, G:0.13, T:0.06
Consensus pattern (14 bp):
CCAACCAAACTGGC
Found at i:26307978 original size:14 final size:14
Alignment explanation
Indices: 26307959--26307988 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
26307949 GTCATTTAGG
26307959 CCAACCAAACTGGC
1 CCAACCAAACTGGC
26307973 CCAACCAAACTGGC
1 CCAACCAAACTGGC
26307987 CC
1 CC
26307989 GGTGATTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.47, G:0.13, T:0.07
Consensus pattern (14 bp):
CCAACCAAACTGGC
Found at i:26312261 original size:19 final size:20
Alignment explanation
Indices: 26312239--26312305 Score: 50
Period size: 20 Copynumber: 3.5 Consensus size: 20
26312229 AATTTTATAT
26312239 AAAT-TATAAAATACATTAA
1 AAATATATAAAATACATTAA
* **
26312258 AAAT-T-GAAAATTTATTAA
1 AAATATATAAAATACATTAA
* **
26312276 AAATATATAAATTACAAAAA
1 AAATATATAAAATACATTAA
*
26312296 AAATGTATAA
1 AAATATATAA
26312306 TTTATGAAAA
Statistics
Matches: 36, Mismatches: 10, Indels: 3
0.73 0.20 0.06
Matches are distributed among these distances:
18 14 0.39
19 6 0.17
20 16 0.44
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (20 bp):
AAATATATAAAATACATTAA
Found at i:26312298 original size:38 final size:37
Alignment explanation
Indices: 26312239--26312324 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 37
26312229 AATTTTATAT
** *
26312239 AAATTATAAAATACATTAAAAAT-TGAAAATTTATTAA
1 AAATTATAAAATACAAAAAAAATGT-AAAATTTATGAA
* *
26312276 AAATATATAAATTACAAAAAAAATGTATAATTTATGAA
1 AAAT-TATAAAATACAAAAAAAATGTAAAATTTATGAA
26312314 AAATTATAAAA
1 AAATTATAAAA
26312325 AAATAAAAGA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
37 10 0.24
38 30 0.73
39 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (37 bp):
AAATTATAAAATACAAAAAAAATGTAAAATTTATGAA
Found at i:26312711 original size:6 final size:7
Alignment explanation
Indices: 26312694--26312722 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
26312684 AGTTGTATGT
26312694 TTTTTTG
1 TTTTTTG
26312701 TTTTTTG
1 TTTTTTG
26312708 TTTTTTG
1 TTTTTTG
26312715 TTTTTTG
1 TTTTTTG
26312722 T
1 T
26312723 AATTTTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (7 bp):
TTTTTTG
Found at i:26312792 original size:10 final size:10
Alignment explanation
Indices: 26312773--26312817 Score: 54
Period size: 10 Copynumber: 4.2 Consensus size: 10
26312763 ATTTCCTATA
26312773 TTTTATATTT
1 TTTTATATTT
*
26312783 TTTTACATTT
1 TTTTATATTT
26312793 TTTCTATATATT
1 TTT-TATAT-TT
26312805 TTTTAATATTT
1 TTTT-ATATTT
26312816 TT
1 TT
26312818 AATAAATTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
10 12 0.40
11 9 0.30
12 9 0.30
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTTATATTT
Found at i:26312916 original size:9 final size:9
Alignment explanation
Indices: 26312898--26313072 Score: 72
Period size: 9 Copynumber: 18.9 Consensus size: 9
26312888 TTTTTAAAAC
*
26312898 TTTATTATT
1 TTTATAATT
26312907 TTTATAATT
1 TTTATAATT
*
26312916 TTTACAATT
1 TTTATAATT
26312925 TTTAATAATT
1 TTT-ATAATT
* *
26312935 CTAATAATT
1 TTTATAATT
26312944 TTT-T-ATT
1 TTTATAATT
*
26312951 TTAAT-ATT
1 TTTATAATT
*
26312959 TTTTTCAACTT
1 TTTAT-AA-TT
* *
26312970 TTAAATAAAT
1 TT-TATAATT
26312980 TTTATAATT
1 TTTATAATT
* *
26312989 TATATATTGT
1 TTTATAAT-T
26312999 CATTTATAATT
1 --TTTATAATT
26313010 TTCTAT-ATT
1 TT-TATAATT
** *
26313019 TTGT-GCACT
1 TT-TATAATT
26313028 TTTATATATT
1 TTTATA-ATT
*
26313038 TTTTTAATT
1 TTTATAATT
*
26313047 TTTATATTT
1 TTTATAATT
*
26313056 TTTATGATT
1 TTTATAATT
*
26313065 TCTATAAT
1 TTTATAAT
26313073 AATTTTAAAT
Statistics
Matches: 121, Mismatches: 32, Indels: 26
0.68 0.18 0.15
Matches are distributed among these distances:
7 5 0.04
8 9 0.07
9 72 0.60
10 21 0.17
11 7 0.06
12 7 0.06
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTATAATT
Found at i:26313065 original size:18 final size:17
Alignment explanation
Indices: 26312898--26313058 Score: 63
Period size: 19 Copynumber: 8.7 Consensus size: 17
26312888 TTTTTAAAAC
*
26312898 TTTATTATTTTTATAATT
1 TTTA-TATTTTTTTAATT
* *
26312916 TTTACAATTTTTAATAATT
1 TTTA-TATTTTT-TTAATT
* * *
26312935 CTAATAATTTTTT-ATT
1 TTTATATTTTTTTAATT
*
26312951 TTAATATTTTTTTCAACTT
1 TTTATATTTTTTT-AA-TT
* * *
26312970 TTAAATAAATTTTATAATT
1 TT-TAT-ATTTTTTTAATT
*
26312989 TATATATTGTCATTTATAATT
1 TTTATATT-T--TTT-TAATT
** *
26313010 TTCTATATTTTGTGCACTT
1 TT-TATATTTT-TTTAATT
26313029 TTATATATTTTTTTAATT
1 TT-TATATTTTTTTAATT
26313047 TTTATATTTTTT
1 TTTATATTTTTT
26313059 ATGATTTCTA
Statistics
Matches: 108, Mismatches: 23, Indels: 25
0.69 0.15 0.16
Matches are distributed among these distances:
16 14 0.13
17 13 0.12
18 25 0.23
19 29 0.27
20 8 0.07
21 13 0.12
22 6 0.06
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (17 bp):
TTTATATTTTTTTAATT
Found at i:26313070 original size:18 final size:17
Alignment explanation
Indices: 26313032--26313070 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
26313022 TGCACTTTTA
*
26313032 TATATTTTTTTAATTTT
1 TATATTTTTTTAATTTC
*
26313049 TATATTTTTTATGATTTC
1 TATATTTTTT-TAATTTC
26313067 TATA
1 TATA
26313071 ATAATTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (17 bp):
TATATTTTTTTAATTTC
Found at i:26314191 original size:31 final size:32
Alignment explanation
Indices: 26314153--26314221 Score: 122
Period size: 31 Copynumber: 2.2 Consensus size: 32
26314143 TGGGTCCCCA
26314153 GACCCACCTAATCCCCGCTATACCCG-CCTGC
1 GACCCACCTAATCCCCGCTATACCCGCCCTGC
*
26314184 GACCCACCTAATCCTCGCTATACCCGCCCTGC
1 GACCCACCTAATCCCCGCTATACCCGCCCTGC
26314216 GACCCA
1 GACCCA
26314222 TTTCATATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 25 0.69
32 11 0.31
ACGTcount: A:0.20, C:0.51, G:0.13, T:0.16
Consensus pattern (32 bp):
GACCCACCTAATCCCCGCTATACCCGCCCTGC
Found at i:26316310 original size:29 final size:28
Alignment explanation
Indices: 26316264--26316359 Score: 93
Period size: 30 Copynumber: 3.2 Consensus size: 28
26316254 CATTGTATTT
* * *
26316264 AAATAAACCTTTATACTTTTGTTATATCC
1 AAATAAGCCCTTA-ACTTTTATTATATCC
* *
26316293 AAATAAGCCCTTACACTTTAATTGATATTC
1 AAATAAGCCCTTA-ACTTTTATT-ATATCC
26316323 AAATAAGCCCTTAATCTTTTACTTATATCC
1 AAATAAGCCCTTAA-CTTTTA-TTATATCC
*
26316353 AATTAAG
1 AAATAAG
26316360 TTATTATGTA
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
29 19 0.35
30 34 0.62
31 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.40
Consensus pattern (28 bp):
AAATAAGCCCTTAACTTTTATTATATCC
Found at i:26317086 original size:20 final size:20
Alignment explanation
Indices: 26317063--26317107 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
26317053 TTTCAACTTT
26317063 TTAAAATTTTTAAATAATTA
1 TTAAAATTTTTAAATAATTA
* ** *
26317083 TTAATATTTTTTTATAATTT
1 TTAAAATTTTTAAATAATTA
26317103 TTAAA
1 TTAAA
26317108 CTTCTTTGGT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TTAAAATTTTTAAATAATTA
Found at i:26318711 original size:24 final size:24
Alignment explanation
Indices: 26318665--26318711 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
26318655 ATTTATTTAA
* *
26318665 ATGTGTACAATTGAATCAAAATTT
1 ATGTATACAATTGAACCAAAATTT
* *
26318689 ATGTATACATTTGAACCATAATT
1 ATGTATACAATTGAACCAAAATT
26318712 AAAGTTTCAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (24 bp):
ATGTATACAATTGAACCAAAATTT
Found at i:26328453 original size:15 final size:15
Alignment explanation
Indices: 26328419--26328457 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
26328409 ACACAGATCA
*
26328419 AGATGATCATGAGAT
1 AGATGATGATGAGAT
*
26328434 AGATGATGATGAGTT
1 AGATGATGATGAGAT
*
26328449 TGATGATGA
1 AGATGATGA
26328458 AGTATTGGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.03, G:0.31, T:0.31
Consensus pattern (15 bp):
AGATGATGATGAGAT
Found at i:26340164 original size:24 final size:24
Alignment explanation
Indices: 26340115--26340166 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
26340105 ATTTAGCCTT
* *
26340115 ATTTATTTAACAGGGACTAACTTA
1 ATTTATTTAACAGAGACAAACTTA
*
26340139 ATTTATTTAACAGTAGAGAAAC-TA
1 ATTTATTTAACAG-AGACAAACTTA
26340163 ATTT
1 ATTT
26340167 GATCAGGCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (24 bp):
ATTTATTTAACAGAGACAAACTTA
Found at i:26341405 original size:4 final size:4
Alignment explanation
Indices: 26341396--26341449 Score: 90
Period size: 4 Copynumber: 13.5 Consensus size: 4
26341386 TGAAATTGCT
*
26341396 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG CATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
26341444 CATG TA
1 TATG TA
26341450 AATTTCTTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.26, C:0.04, G:0.24, T:0.46
Consensus pattern (4 bp):
TATG
Found at i:26346022 original size:7 final size:7
Alignment explanation
Indices: 26345985--26346038 Score: 63
Period size: 7 Copynumber: 7.7 Consensus size: 7
26345975 AAAGTATTTT
26345985 AAAATTA
1 AAAATTA
*
26345992 AAGATTA
1 AAAATTA
*
26345999 AAGATTA
1 AAAATTA
*
26346006 AAGATTA
1 AAAATTA
26346013 AAAATTA
1 AAAATTA
*
26346020 AAAAATA
1 AAAATTA
*
26346027 AAAATAA
1 AAAATTA
26346034 AAAAT
1 AAAAT
26346039 ATATTTATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 42 1.00
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (7 bp):
AAAATTA
Found at i:26352088 original size:15 final size:15
Alignment explanation
Indices: 26352068--26352100 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26352058 CTCGAGGAGA
*
26352068 AACAGAGACTTGCTG
1 AACAGAAACTTGCTG
26352083 AACAGAAACTTGCTG
1 AACAGAAACTTGCTG
26352098 AAC
1 AAC
26352101 CTGAAATGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.18
Consensus pattern (15 bp):
AACAGAAACTTGCTG
Found at i:26361064 original size:49 final size:49
Alignment explanation
Indices: 26361001--26361096 Score: 138
Period size: 49 Copynumber: 2.0 Consensus size: 49
26360991 ACATTTCAAG
* * * *
26361001 TTCAAGTAAATTTAGATTTGGATTATTTCGGATTGTGGGTCATTTTATA
1 TTCAAATAAATTTAGATTTGGATTATTTCAGATTATGGATCATTTTATA
* *
26361050 TTCAAATAAATTTAGGTTTGGATTGTTTCAGATTATGGATCATTTTA
1 TTCAAATAAATTTAGATTTGGATTATTTCAGATTATGGATCATTTTA
26361097 GGTTCAAGTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.47
Consensus pattern (49 bp):
TTCAAATAAATTTAGATTTGGATTATTTCAGATTATGGATCATTTTATA
Found at i:26365142 original size:27 final size:26
Alignment explanation
Indices: 26365091--26365143 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
26365081 TTATTCTCTT
*
26365091 TTTCTCTTTATTTTCCATTATCTTTTG
1 TTTCTCTTTATTTTCCA-TACCTTTTG
26365118 TTTCTCCTTCTATTTTCC-TACCTTTT
1 TTTCT-CTT-TATTTTCCATACCTTTT
26365144 CCATGTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 12 0.52
28 3 0.13
29 8 0.35
ACGTcount: A:0.09, C:0.25, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTCTCTTTATTTTCCATACCTTTTG
Found at i:26367144 original size:67 final size:67
Alignment explanation
Indices: 26367026--26367154 Score: 186
Period size: 67 Copynumber: 1.9 Consensus size: 67
26367016 CCATCAGAAA
* * * *
26367026 GAAACTATATTGCTTCGTGTAGGAATAGCAATTTCGGAATCGGAGTAATTTGCTTCATTATCAAA
1 GAAACTATATTGCTTCGTGTAGGAATAGCAATTCCAGAATCGGAATAATTTGCTTCACTATCAAA
26367091 CG
66 CG
* * * *
26367093 GAAACTATATTGCTTTGTGTAGGAATAGCAGTTCCAGAATCTGAATCATTTGCTTCACTATC
1 GAAACTATATTGCTTCGTGTAGGAATAGCAATTCCAGAATCGGAATAATTTGCTTCACTATC
26367155 TCTCTATATC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
67 54 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (67 bp):
GAAACTATATTGCTTCGTGTAGGAATAGCAATTCCAGAATCGGAATAATTTGCTTCACTATCAAA
CG
Found at i:26369504 original size:28 final size:28
Alignment explanation
Indices: 26369464--26369520 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
26369454 TGAATATTCA
26369464 AATTTTGAGAAGTAGAGAGTCAGTTATT
1 AATTTTGAGAAGTAGAGAGTCAGTTATT
26369492 AATTTTGAGAAGTAGAGAGTCAGTTATT
1 AATTTTGAGAAGTAGAGAGTCAGTTATT
26369520 A
1 A
26369521 TTTCCTTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.35
Consensus pattern (28 bp):
AATTTTGAGAAGTAGAGAGTCAGTTATT
Found at i:26371598 original size:15 final size:17
Alignment explanation
Indices: 26371555--26371604 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
26371545 ATCATCTCTG
26371555 AATGTTAGATAATATAA
1 AATGTTAGATAATATAA
*
26371572 AAT-TT--ATAATAAAAA
1 AATGTTAGATAAT-ATAA
26371587 AATGTTAGATAATATAA
1 AATGTTAGATAATATAA
26371604 A
1 A
26371605 TAAGTATGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 4 0.15
17 7 0.26
18 5 0.19
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (17 bp):
AATGTTAGATAATATAA
Found at i:26373334 original size:21 final size:21
Alignment explanation
Indices: 26373308--26373353 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
26373298 TTAATATATT
*
26373308 TTATTTT-ATAAATTTATTTAA
1 TTATTTTAATAAA-TTAATTAA
*
26373329 TTATTTTAATTAATTAATTAA
1 TTATTTTAATAAATTAATTAA
26373350 TTAT
1 TTAT
26373354 ATAATTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTATTTTAATAAATTAATTAA
Found at i:26373336 original size:13 final size:13
Alignment explanation
Indices: 26373297--26373344 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
26373287 TATTTAAGAT
26373297 TTTAATATATTTTA
1 TTTAAT-TATTTTA
* * *
26373311 TTTTATAAATTTA
1 TTTAATTATTTTA
26373324 TTTAATTATTTTA
1 TTTAATTATTTTA
*
26373337 ATTAATTA
1 TTTAATTA
26373345 ATTAATTATA
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
13 22 0.81
14 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTAATTATTTTA
Found at i:26373362 original size:21 final size:20
Alignment explanation
Indices: 26373313--26373362 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 20
26373303 ATATTTTATT
*
26373313 TTATA-AATTTATTTAATTA
1 TTATATAATTTAATTAATTA
26373332 TT-T-TAA-TTAATTAATTAA
1 TTATATAATTTAATTAATT-A
26373350 TTATATAATTTAA
1 TTATATAATTTAA
26373363 AAATCTCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
17 9 0.36
18 6 0.24
19 3 0.12
20 3 0.12
21 4 0.16
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTATATAATTTAATTAATTA
Found at i:26374871 original size:9 final size:10
Alignment explanation
Indices: 26374851--26374901 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
26374841 TTTAATATTT
26374851 AAAAT-TTAA
1 AAAATATTAA
*
26374860 AAAAAATTAA
1 AAAATATTAA
26374870 AAAATATT-A
1 AAAATATTAA
* *
26374879 ACATTATTAA
1 AAAATATTAA
26374889 AAAATATATAA
1 AAAATAT-TAA
26374900 AA
1 AA
26374902 GTTTTAAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
9 11 0.33
10 17 0.52
11 5 0.15
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAATATTAA
Found at i:26374908 original size:20 final size:19
Alignment explanation
Indices: 26374865--26374910 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
26374855 TTTAAAAAAA
*
26374865 ATTAAAAAATATTAACATT
1 ATTAAAAAATATTAAAATT
26374884 ATTAAAAAATATATAAAAGTT
1 ATTAAAAAATAT-TAAAA-TT
26374905 -TTAAAA
1 ATTAAAA
26374911 TTTAAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 12 0.50
20 10 0.42
21 2 0.08
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
ATTAAAAAATATTAAAATT
Found at i:26378532 original size:33 final size:33
Alignment explanation
Indices: 26378493--26378666 Score: 235
Period size: 33 Copynumber: 5.3 Consensus size: 33
26378483 CTTTACTTTT
* *
26378493 CTCACCTGCTTTTTTAATGGATTCACC-TTCTCC
1 CTCACCTGCATTTTCAATGGATTCACCTTTC-CC
*
26378526 CTCACCTGGATTTTCAATGGATTCACC-TTCTCC
1 CTCACCTGCATTTTCAATGGATTCACCTTTC-CC
*
26378559 CTCACCTGGATTTTCAATGGATTCACCTTTCCC
1 CTCACCTGCATTTTCAATGGATTCACCTTTCCC
* * *
26378592 CTCACCTGCTTTTTCAGTGGATTCACGTTTCCC
1 CTCACCTGCATTTTCAATGGATTCACCTTTCCC
* *
26378625 CTCGCCTGGATTTTCAATGGATTCACCTTTCCC
1 CTCACCTGCATTTTCAATGGATTCACCTTTCCC
26378658 CTCACCTGC
1 CTCACCTGC
26378667 TGCTACAGGT
Statistics
Matches: 126, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
33 123 0.98
34 3 0.02
ACGTcount: A:0.16, C:0.34, G:0.13, T:0.37
Consensus pattern (33 bp):
CTCACCTGCATTTTCAATGGATTCACCTTTCCC
Found at i:26384535 original size:20 final size:20
Alignment explanation
Indices: 26384497--26384535 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26384487 GTTACAGTTG
*
26384497 TCCTTCAATTCTCTATATTT
1 TCCTTCAATTCGCTATATTT
*
26384517 TCCTTCAATTCGCTTTATT
1 TCCTTCAATTCGCTATATT
26384536 CCAACTGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.26, G:0.03, T:0.54
Consensus pattern (20 bp):
TCCTTCAATTCGCTATATTT
Found at i:26384580 original size:14 final size:14
Alignment explanation
Indices: 26384561--26384590 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26384551 CCTTCTCCTT
*
26384561 TTCGTTTCGTTTCC
1 TTCGTTTCATTTCC
26384575 TTCGTTTCATTTCC
1 TTCGTTTCATTTCC
26384589 TT
1 TT
26384591 TCCATAGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.03, C:0.27, G:0.10, T:0.60
Consensus pattern (14 bp):
TTCGTTTCATTTCC
Found at i:26402315 original size:29 final size:28
Alignment explanation
Indices: 26402279--26402356 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
26402269 TCATGAGATT
26402279 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
26402309 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
26402336 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
26402357 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:26402574 original size:174 final size:174
Alignment explanation
Indices: 26402309--26402874 Score: 1105
Period size: 174 Copynumber: 3.3 Consensus size: 174
26402299 AAATTGTACA
*
26402309 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
26402374 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
26402439 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
26402483 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
26402548 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
26402613 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
26402657 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
26402722 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
26402787 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
26402831 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGC
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGC
26402875 TTACCTTGAG
Statistics
Matches: 388, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 388 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:26406315 original size:43 final size:43
Alignment explanation
Indices: 26406267--26406628 Score: 375
Period size: 43 Copynumber: 8.3 Consensus size: 43
26406257 TTTTAGAAAT
* * * * *
26406267 AAACGCCGCTAAAGAACAAGACCTTTAGGGGCGCTATTCCGAA
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* *
26406310 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * *
26406353 AAACGTCGCTAAAGAGCAAGACCTTTAACGGTGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * *
26406396 AAATGCCGCTAAAGACCATGACCTTTAGCAGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* *
26406439 AAATGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * *
26406482 AAACGTCGCTAAAGACTATGACCTTTAGCGGCGATTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * * **
26406525 AAACGCCTCTAACTCTAAAGAACATGACCTTTAGCGGTGCTTTTATCAC
1 AAACG---C---CGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
** * * * *
26406574 AAACGCCGCTAAAGAATAA-ACCTTTACCGGCGCTTATCGCAA
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
26406616 AAACGCCGCTAAA
1 AAACGCCGCTAAA
26406629 AACATAACCT
Statistics
Matches: 267, Mismatches: 46, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
42 30 0.11
43 201 0.75
46 1 0.00
49 35 0.13
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:26406575 original size:49 final size:49
Alignment explanation
Indices: 26406490--26406585 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 49
26406480 ACAAACGTCG
* *
26406490 CTAAAGACTATGACCTTTAGCGGCGATTTTCCCACAAACGCCTCTAACT
1 CTAAAGACTATGACCTTTAGCGGCGATTTTACCACAAACGCCGCTAACT
* * *
26406539 CTAAAGAAC-ATGACCTTTAGCGGTGCTTTTATCACAAACGCCGCTAA
1 CTAAAG-ACTATGACCTTTAGCGGCGATTTTACCACAAACGCCGCTAA
26406586 AGAATAAACC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
49 39 0.95
50 2 0.05
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (49 bp):
CTAAAGACTATGACCTTTAGCGGCGATTTTACCACAAACGCCGCTAACT
Found at i:26409102 original size:9 final size:10
Alignment explanation
Indices: 26409083--26409115 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
26409073 ATATTTTAGA
26409083 AAAAAATAAT
1 AAAAAATAAT
26409093 AAAAAA-AAT
1 AAAAAATAAT
26409102 AAAAAATAAT
1 AAAAAATAAT
26409112 AAAA
1 AAAA
26409116 GGTACTTGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAATAAT
Found at i:26410793 original size:41 final size:41
Alignment explanation
Indices: 26410747--26411025 Score: 405
Period size: 41 Copynumber: 6.8 Consensus size: 41
26410737 AAAATCAACA
*
26410747 AAAGCCTTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCT
1 AAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCT
* * * *
26410788 AAAGCCCTGAACATTAGCGGCGCTTATTAAAAAACGCCACT
1 AAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCT
* *
26410829 AAATCCCTGAGCATTAGCGGCGCTTATTCAAAAACGCCGCT
1 AAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCT
*
26410870 AAAGCCCTGAGCATTAGCGACGCTTCTTCAAAAACGCCGCT
1 AAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCT
26410911 AAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCT
1 AAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCT
* * * * *
26410952 AAATCCCTAAGCATTAGCGGCGCTTTTTAAAAAATGCCGCT
1 AAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCT
* * * *
26410993 AAAACCCTAAACATTAGCGGCGCTTTTTCAAAA
1 AAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAA
26411026 TCGCTAATGC
Statistics
Matches: 217, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 217 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (41 bp):
AAAGCCCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCT
Found at i:26411210 original size:40 final size:40
Alignment explanation
Indices: 26411092--26411225 Score: 164
Period size: 40 Copynumber: 3.4 Consensus size: 40
26411082 CGCTTTTTGG
*
26411092 AAAA-CGCCACTAATGC-TCATTTTTAGTGGCGTTTTTTTA
1 AAAAGCGCCACTAATGCTTGATTTTTAGTGGCG-TTTTTTA
* *
26411131 AAAAGCGCCACTAATACTTGATCTTTAGTGGCGTTTTTTA
1 AAAAGCGCCACTAATGCTTGATTTTTAGTGGCGTTTTTTA
* * *
26411171 AAAAGCGCCGCTAATGCTTGATTTTTAGCGGTGTTTTTTA
1 AAAAGCGCCACTAATGCTTGATTTTTAGTGGCGTTTTTTA
**
26411211 TCCAAGCGCCACTAA
1 -AAAAGCGCCACTAA
26411226 AAACGCCGCT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 53 0.65
41 24 0.30
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (40 bp):
AAAAGCGCCACTAATGCTTGATTTTTAGTGGCGTTTTTTA
Found at i:26411334 original size:43 final size:43
Alignment explanation
Indices: 26411258--26411437 Score: 220
Period size: 43 Copynumber: 4.2 Consensus size: 43
26411248 TGGTGTAGTG
*
26411258 GTTGGCATCAACTTGTGTTTACGTGTAAGACCACATCTGGGAC
1 GTTGGCATCGACTTGTGTTTACGTGTAAGACCACATCTGGGAC
* * *
26411301 GTTGCCATCGACTTATGTTTACGTGTAAGACCACGTCTGGGAC
1 GTTGGCATCGACTTGTGTTTACGTGTAAGACCACATCTGGGAC
*
26411344 GTTGGCATCGACTTGTGTTTACGTGTAAGACC-CTGTCTGGGAC
1 GTTGGCATCGACTTGTGTTTACGTGTAAGACCAC-ATCTGGGAC
* *** * * *
26411387 AG-TGGCATCGATTTGTAAATACATGTAAGACCACGTCTGGAAC
1 -GTTGGCATCGACTTGTGTTTACGTGTAAGACCACATCTGGGAC
26411430 GTTGGCAT
1 GTTGGCAT
26411438 TGTACGAACT
Statistics
Matches: 121, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
42 2 0.02
43 117 0.97
44 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (43 bp):
GTTGGCATCGACTTGTGTTTACGTGTAAGACCACATCTGGGAC
Found at i:26414884 original size:3 final size:3
Alignment explanation
Indices: 26414865--26414918 Score: 51
Period size: 3 Copynumber: 19.0 Consensus size: 3
26414855 AATTTATTTC
* * * *
26414865 ATA AT- ATA ATA ACA ATA ATA TTA ATA ATG ACA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26414911 ATA A-A ATA
1 ATA ATA ATA
26414919 TCATTTAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
2 6 0.15
3 34 0.85
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:26434016 original size:52 final size:52
Alignment explanation
Indices: 26433959--26434113 Score: 274
Period size: 52 Copynumber: 3.0 Consensus size: 52
26433949 CTAAGAACTT
* * *
26433959 TGTCTTTCACTTTGTAAAAGTAGATTCCCTTTTATCTGCTCGTTTAACTTTA
1 TGTCTTTCACTTTGTAAAAGCAGATTCCCTCTTATCTGCTCGTTTAGCTTTA
26434011 TGTCTTTCACTTTGTAAAAGCAGATTCCCTCTTATCTGCTCGTTTAGCTTTA
1 TGTCTTTCACTTTGTAAAAGCAGATTCCCTCTTATCTGCTCGTTTAGCTTTA
*
26434063 TGTCTTTCACTTTGTAAAAACAGATTCCCTCTTATCTGCTCGTTTAGCTTT
1 TGTCTTTCACTTTGTAAAAGCAGATTCCCTCTTATCTGCTCGTTTAGCTTT
26434114 TATCCCCTAT
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 99 1.00
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.46
Consensus pattern (52 bp):
TGTCTTTCACTTTGTAAAAGCAGATTCCCTCTTATCTGCTCGTTTAGCTTTA
Found at i:26435161 original size:52 final size:52
Alignment explanation
Indices: 26435104--26435206 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
26435094 ATAGGGGATA
26435104 AAAGCTAAACAAACAAATAAGAGGGAATCTGCTTTTACAAAGTGAAAGACAT
1 AAAGCTAAACAAACAAATAAGAGGGAATCTGCTTTTACAAAGTGAAAGACAT
* * *
26435156 AAAGCTAAACGAGCAGATAAGAGGGAATCTGCTTTTACAAAGTGAAAGACA
1 AAAGCTAAACAAACAAATAAGAGGGAATCTGCTTTTACAAAGTGAAAGACA
26435207 AATATTCATA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.18
Consensus pattern (52 bp):
AAAGCTAAACAAACAAATAAGAGGGAATCTGCTTTTACAAAGTGAAAGACAT
Found at i:26435374 original size:16 final size:16
Alignment explanation
Indices: 26435350--26435385 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
26435340 CTGTTCATGA
*
26435350 ATGTCTTTCCAAAGAG
1 ATGTATTTCCAAAGAG
26435366 ATGTATTTCCAAAGAG
1 ATGTATTTCCAAAGAG
26435382 ATGT
1 ATGT
26435386 GTCTTCATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.33
Consensus pattern (16 bp):
ATGTATTTCCAAAGAG
Found at i:26441711 original size:18 final size:18
Alignment explanation
Indices: 26441688--26441724 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26441678 AATATTGTGT
* *
26441688 TTTAGTTTTGTTTGTGCA
1 TTTAGTGTTGTTTATGCA
26441706 TTTAGTGTTGTTTATGCA
1 TTTAGTGTTGTTTATGCA
26441724 T
1 T
26441725 GTTTTGCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.05, G:0.22, T:0.59
Consensus pattern (18 bp):
TTTAGTGTTGTTTATGCA
Found at i:26442401 original size:22 final size:20
Alignment explanation
Indices: 26442376--26442415 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
26442366 GTGGCTAATA
26442376 TTTGATAACTTAGAATAATTGC
1 TTTGATAA-TTAG-ATAATTGC
*
26442398 TTTGTTAATTAGATAATT
1 TTTGATAATTAGATAATT
26442416 AGTCGATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 4 0.24
22 7 0.41
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTGATAATTAGATAATTGC
Found at i:26443481 original size:92 final size:92
Alignment explanation
Indices: 26443353--26443564 Score: 250
Period size: 92 Copynumber: 2.3 Consensus size: 92
26443343 AAACTTTTTC
* * * *
26443353 AAAAGGAGCAATTAAGCTCTTGTTTTTTTTTCCACTCATTTGAATACTTAAACTTTCAAAATGCT
1 AAAAGAAGCAATTAAGCCCTT-CTTTTTTTTCCACTCATTTGAATACTTAAACTTTCAAAATGCA
*
26443418 TAAAAAAAGCCT-TCAAAC-CTTAAAAAA
65 T-AAAAAAGACTCTCAAACTCTTAAAAAA
* ** *
26443445 AAAAGAAGCAATTAAGCCCTTACTTTTTTTTGCACTCATTTGGGTACTTGAACTTTCAAAATGCA
1 AAAAGAAGCAATTAAGCCCTT-CTTTTTTTTCCACTCATTTGAATACTTAAACTTTCAAAATGCA
* *
26443510 TAAAAAAGACTCTCAAACTTTTTCAAAAA
65 TAAAAAAGACTCTCAAAC-TCTTAAAAAA
*
26443539 AAAA-AAGAAATTAAGTCCCTTCTTTT
1 AAAAGAAGCAATTAAG-CCCTTCTTTT
26443565 ATTAAAAATT
Statistics
Matches: 103, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
91 9 0.09
92 63 0.61
93 15 0.15
94 16 0.16
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.33
Consensus pattern (92 bp):
AAAAGAAGCAATTAAGCCCTTCTTTTTTTTCCACTCATTTGAATACTTAAACTTTCAAAATGCAT
AAAAAAGACTCTCAAACTCTTAAAAAA
Found at i:26443707 original size:38 final size:37
Alignment explanation
Indices: 26443649--26443737 Score: 97
Period size: 38 Copynumber: 2.4 Consensus size: 37
26443639 ATTCAAATAT
* * *
26443649 TAAAAGATTAGAAAAAATATAAAAATATAAAAAAATTG
1 TAAAAAATTATAAAAAATATAAAAATAT-AAAAAATTA
* * *
26443687 TAAAAAATTATAAAATATATAGATATATAAAAAATTA
1 TAAAAAATTATAAAAAATATAAAAATATAAAAAATTA
**
26443724 TAAAATTTTATAAA
1 TAAAAAATTATAAA
26443738 GTCATAAGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 20 0.47
38 23 0.53
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.30
Consensus pattern (37 bp):
TAAAAAATTATAAAAAATATAAAAATATAAAAAATTA
Found at i:26443725 original size:10 final size:9
Alignment explanation
Indices: 26443660--26443728 Score: 52
Period size: 10 Copynumber: 7.4 Consensus size: 9
26443650 AAAAGATTAG
26443660 AAAAAATAT
1 AAAAAATAT
26443669 -AAAAATAT
1 AAAAAATAT
*
26443677 AAAAAAATTGT
1 -AAAAAA-TAT
26443688 AAAAAAT-T
1 AAAAAATAT
*
26443696 ATAAAATAT
1 AAAAAATAT
* *
26443705 ATAGATATAT
1 A-AAAAATAT
26443715 AAAAAATTAT
1 AAAAAA-TAT
26443725 AAAA
1 AAAA
26443729 TTTTATAAAG
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
8 15 0.32
9 6 0.13
10 24 0.51
11 2 0.04
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (9 bp):
AAAAAATAT
Found at i:26443981 original size:35 final size:35
Alignment explanation
Indices: 26443933--26444003 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
26443923 GGGGTCATTA
* **
26443933 ATTTTTTATGATTTTTATAAAATTTTAAAATTTTT
1 ATTTTTTACGATTTTTATAAAAAATTAAAATTTTT
*
26443968 ATTTTTTACGATTTTTATAAAAAATTATAATTTTT
1 ATTTTTTACGATTTTTATAAAAAATTAAAATTTTT
26444003 A
1 A
26444004 GTAAATTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (35 bp):
ATTTTTTACGATTTTTATAAAAAATTAAAATTTTT
Found at i:26444256 original size:85 final size:87
Alignment explanation
Indices: 26444096--26444265 Score: 245
Period size: 85 Copynumber: 2.0 Consensus size: 87
26444086 TAATAAGAGC
* * *
26444096 AGGGGCTTAATTGCTTTTTTTGAAAAATTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGT
1 AGGGGCTTAAATGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGT
*
26444161 ACCCAGTTGAGTG-AAAAAAGT
66 ACCCAATTGAGTGCAAAAAAGT
* *
26444182 AGGGGCTTAAATGCTTTTTTT-AAGAAGTTTGAGGGCCTTTTTTATGCATTTTGAAAGTTCAAGT
1 AGGGGCTTAAATGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGT
***
26444246 GTTCAATTGAGTGCAAAAAA
66 ACCCAATTGAGTGCAAAAAA
26444266 AAAAGAGAGG
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
85 48 0.65
86 26 0.35
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.38
Consensus pattern (87 bp):
AGGGGCTTAAATGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGT
ACCCAATTGAGTGCAAAAAAGT
Found at i:26446462 original size:25 final size:25
Alignment explanation
Indices: 26446428--26446477 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
26446418 TTTTTTTTTT
26446428 ACCTTTTTGCAAGAATGAAATTAAG
1 ACCTTTTTGCAAGAATGAAATTAAG
26446453 ACCTTTTTGCAAGAATGAAATTAAG
1 ACCTTTTTGCAAGAATGAAATTAAG
26446478 GGAGTTTGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (25 bp):
ACCTTTTTGCAAGAATGAAATTAAG
Found at i:26451762 original size:14 final size:15
Alignment explanation
Indices: 26451743--26451784 Score: 59
Period size: 14 Copynumber: 2.8 Consensus size: 15
26451733 TCATTAATTG
26451743 ATATATTTTTATA-A
1 ATATATTTTTATATA
26451757 ATATATTTTTAATATA
1 ATATATTTTT-ATATA
*
26451773 AAATATTTTTAT
1 ATATATTTTTAT
26451785 TCACTTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 10 0.40
15 5 0.20
16 10 0.40
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATATTTTTATATA
Found at i:26451774 original size:17 final size:16
Alignment explanation
Indices: 26451745--26451783 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
26451735 ATTAATTGAT
*
26451745 ATATTTTT-ATA-AAT
1 ATATTTTTAATATAAA
26451759 ATATTTTTAATATAAA
1 ATATTTTTAATATAAA
26451775 ATATTTTTA
1 ATATTTTTA
26451784 TTCACTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.36
15 3 0.14
16 11 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATATTTTTAATATAAA
Found at i:26452656 original size:20 final size:20
Alignment explanation
Indices: 26452611--26452656 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
26452601 ATTTAAAAAT
* * *
26452611 ATAATTTTTATAATTTTCTA
1 ATAATTATTATAATATTATA
*
26452631 AAAATTATTATAATATTATA
1 ATAATTATTATAATATTATA
26452651 ATAATT
1 ATAATT
26452657 TCTAATCATT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
ATAATTATTATAATATTATA
Found at i:26457051 original size:103 final size:104
Alignment explanation
Indices: 26456807--26457072 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
26456797 GTTGTACATA
** *
26456807 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
26456872 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
26456911 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
26456975 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
26457014 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
26457073 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:26466328 original size:19 final size:21
Alignment explanation
Indices: 26466290--26466328 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
26466280 GTTTAAATTT
26466290 TATTTTCTTTACAATTTAATC
1 TATTTTCTTTACAATTTAATC
*
26466311 TATTTT-TTT-CATTTTAAT
1 TATTTTCTTTACAATTTAAT
26466329 ATCGCACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.64
Consensus pattern (21 bp):
TATTTTCTTTACAATTTAATC
Found at i:26470302 original size:106 final size:106
Alignment explanation
Indices: 26470129--26470429 Score: 392
Period size: 106 Copynumber: 2.8 Consensus size: 106
26470119 TCAATGCATC
* *
26470129 AATAAAATAAGGGGAAGGTTTTCTAAAATTTTATATAAATATAAGTATCTTAAATACAATGATCT
1 AATAAAATAAGGGGAAAGTTTTCTAAAATTTTATATAAATATAAGTATCTTAAATACGATGATCT
* * ** *
26470194 TGTAAAAAAATAGAATTTAAGTGTCAGATGTGTCGATGTATA
66 TGTAAAAAAAT-GAATTTAAATGTCAAATACGTCGATATATA
**
26470236 AATAAAATAAGGGGAAAGTTTTCTAAAA-TTTATATAAACGTAAGTATCTTAAATACGATGATCT
1 AATAAAATAAGGGGAAAGTTTTCTAAAATTTTATATAAATATAAGTATCTTAAATACGATGATCT
* *
26470300 TGTGATAAAATGAAATTTAAATGTCAAATACGTCGATATATA
66 TGTAAAAAAATG-AATTTAAATGTCAAATACGTCGATATATA
* * **
26470342 AATAAAATAAAGGGAAA-TTTT-TAAAAATTTTATATAAATATAAATATCTTAAATACGAAAATC
1 AATAAAATAAGGGGAAAGTTTTCT-AAAATTTTATATAAATATAAGTATCTTAAATACGATGATC
* *
26470405 TTGTTACAAAATGAGATTTAAATGT
65 TTGTAAAAAAATGA-ATTTAAATGT
26470430 GCATTGTTTT
Statistics
Matches: 171, Mismatches: 19, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
104 1 0.01
105 10 0.06
106 133 0.78
107 27 0.16
ACGTcount: A:0.47, C:0.06, G:0.13, T:0.34
Consensus pattern (106 bp):
AATAAAATAAGGGGAAAGTTTTCTAAAATTTTATATAAATATAAGTATCTTAAATACGATGATCT
TGTAAAAAAATGAATTTAAATGTCAAATACGTCGATATATA
Found at i:26490588 original size:24 final size:22
Alignment explanation
Indices: 26490561--26490621 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 22
26490551 ATAATACACC
26490561 AAATATATTAAAAATATTAAAAAT
1 AAATAT-TTAAAAA-ATTAAAAAT
* *
26490585 AAATATTTCTTAAAAATTGAAAAT
1 AAATA-TT-TAAAAAATTAAAAAT
26490609 AAAT-TTTAAAAAA
1 AAATATTTAAAAAA
26490622 GCTTTATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 6 0.19
22 2 0.06
24 18 0.56
25 6 0.19
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (22 bp):
AAATATTTAAAAAATTAAAAAT
Found at i:26495232 original size:43 final size:44
Alignment explanation
Indices: 26495167--26495253 Score: 149
Period size: 43 Copynumber: 2.0 Consensus size: 44
26495157 CATGTTATAA
*
26495167 TCATATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATC
1 TCATATACGATGCCAATGTCCCAAACATGGTCTTACACGAAATC
*
26495211 TCATAT-CGATGCCAATGTCCCAAATATGGTCTTACACGAAATC
1 TCATATACGATGCCAATGTCCCAAACATGGTCTTACACGAAATC
26495254 ATACCTCGGA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 35 0.85
44 6 0.15
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (44 bp):
TCATATACGATGCCAATGTCCCAAACATGGTCTTACACGAAATC
Found at i:26502900 original size:22 final size:22
Alignment explanation
Indices: 26502872--26502916 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
26502862 CACTTCGCAT
26502872 AGAGTGTTTGTTTTAAGAAGTA
1 AGAGTGTTTGTTTTAAGAAGTA
26502894 AGAGTGTTTGTTTTAAGAAGTA
1 AGAGTGTTTGTTTTAAGAAGTA
26502916 A
1 A
26502917 AAATAATTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (22 bp):
AGAGTGTTTGTTTTAAGAAGTA
Found at i:26506549 original size:19 final size:19
Alignment explanation
Indices: 26506519--26506567 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
26506509 AATTTTTAAT
*
26506519 AAAAAATT--AAAATTAGA
1 AAAAAATTAAAAAAATAGA
*
26506536 AAAAAATTAAAAAAATAGT
1 AAAAAATTAAAAAAATAGA
26506555 AAAAAATATAAAA
1 AAAAAAT-TAAAA
26506568 GATATAGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 8 0.30
19 14 0.52
20 5 0.19
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (19 bp):
AAAAAATTAAAAAAATAGA
Found at i:26506879 original size:21 final size:20
Alignment explanation
Indices: 26506844--26506893 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
26506834 TTTTTATAAT
**
26506844 TTTTTTATTCTAATTTTTAA
1 TTTTTTATTAAAATTTTTAA
**
26506864 TATTTTTATTAAAATTTAAAA
1 T-TTTTTATTAAAATTTTTAA
26506885 TTTTTTATT
1 TTTTTTATT
26506894 TTTTATAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTTTATTAAAATTTTTAA
Found at i:26512854 original size:21 final size:22
Alignment explanation
Indices: 26512830--26512877 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
26512820 TTGAATGGCC
*
26512830 TCTTTTATTTTA-GCTTTGTTT
1 TCTTTTATTTTATGCTTTCTTT
* *
26512851 TC-TTTGTTTTATGTTTTCTTT
1 TCTTTTATTTTATGCTTTCTTT
26512872 TCTTTT
1 TCTTTT
26512878 TTTATTCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 8 0.36
21 11 0.50
22 3 0.14
ACGTcount: A:0.06, C:0.10, G:0.08, T:0.75
Consensus pattern (22 bp):
TCTTTTATTTTATGCTTTCTTT
Found at i:26524220 original size:19 final size:20
Alignment explanation
Indices: 26524180--26524223 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
26524170 GTCTCTTTAG
* *
26524180 GCATT-CATTTCATGCATCT
1 GCATTACATTGCATGCATAT
26524199 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
26524218 GCATTA
1 GCATTA
26524224 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:26526812 original size:7 final size:8
Alignment explanation
Indices: 26526791--26526819 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
26526781 TCTCATGAAT
26526791 TCAAAAAA
1 TCAAAAAA
26526799 TCAAAAAA
1 TCAAAAAA
26526807 TCAAAAAA
1 TCAAAAAA
26526815 TCAAA
1 TCAAA
26526820 GTCAAAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.72, C:0.14, G:0.00, T:0.14
Consensus pattern (8 bp):
TCAAAAAA
Found at i:26529398 original size:86 final size:88
Alignment explanation
Indices: 26528970--26529394 Score: 555
Period size: 86 Copynumber: 4.9 Consensus size: 88
26528960 ATGAAGTTAC
26528970 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
26529035 TGATGGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
26529058 AGATCTTG-CTT-CTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
*
26529121 TGATAGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
*
26529144 AGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
*
26529209 TGATAGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* * * ** *
26529232 AGATCTTGCCTTCCTACATTAACAGCGAAGCA-ATCGAA-A-ACAAAGCCTTGCGTCCATCGATT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTTTCGGTT
* * * **
26529294 G-CAGTGGAGCTAGTTAAAGA-AGC
65 GTGA-TGGAGCTGGTTGAAGACAAA
* * * * **
26529317 AGATCTTGCCTTCCTGCATTAACAGCAAAGCAGATC-AA-AAACAAAGTCTTGCCTCCATCGGTT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTTTCGGTT
*
26529380 G-CATTGGAGCTGGTT
65 GTGA-TGGAGCTGGTT
26529395 AAAGGTTACA
Statistics
Matches: 311, Mismatches: 20, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
85 40 0.13
86 146 0.47
87 12 0.04
88 113 0.36
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
TGATGGAGCTGGTTGAAGACAAA
Found at i:26529716 original size:42 final size:43
Alignment explanation
Indices: 26529656--26529882 Score: 152
Period size: 42 Copynumber: 5.4 Consensus size: 43
26529646 TTGGTCATCC
*
26529656 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAATA-AGAGATCT
1 TATCTCCCTGAAGTTACAGCGGAGCGGATTAAA-ACAGAGATCT
* * * ** *
26529699 TATCT-CCTG-AGATTACAGCGGAGCAGATCGAAGACA-CTATCC
1 TATCTCCCTGAAG-TTACAGCGGAGCGGAT-TAAAACAGAGATCT
* *
26529741 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAGAGAT-T
1 TATCTCCCTGAAGTTACAGCGGAGCGGATTAAAACAGAGATCT
* * * ** *
26529783 TATCTCCCTG-AGATTACAGCGGAGCAGATCGAAGACA-CTATCC
1 TATCTCCCTGAAG-TTACAGCGGAGCGGAT-TAAAACAGAGATCT
* * *
26529826 TATCTCCCCGAAGTTACAGTGGAGTGGATT--AA-AG-GATCT
1 TATCTCCCTGAAGTTACAGCGGAGCGGATTAAAACAGAGATCT
* *
26529865 TATCTCTCTGAGGTTACA
1 TATCTCCCTGAAGTTACA
26529883 TGCAGAGTAG
Statistics
Matches: 139, Mismatches: 34, Indels: 26
0.70 0.17 0.13
Matches are distributed among these distances:
39 19 0.14
40 1 0.01
41 4 0.03
42 57 0.41
43 54 0.39
44 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (43 bp):
TATCTCCCTGAAGTTACAGCGGAGCGGATTAAAACAGAGATCT
Found at i:26529765 original size:43 final size:44
Alignment explanation
Indices: 26529652--26529849 Score: 169
Period size: 42 Copynumber: 4.6 Consensus size: 44
26529642 TTAATTGGTC
* ** *
26529652 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAATA-AGAG
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAG
* * **
26529695 ATCTTATCT-CCTG-AGATTACAGCGGAGCAGATCGAAGACA-CT
1 ATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGACAGAG
* * * *
26529737 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT-TAAAATAGAG
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAG
* * **
26529780 AT-TTATCTCCCTG-AGATTACAGCGGAGCAGATCGAAGACA-CT
1 ATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGACAGAG
*
26529822 ATCCTATCTCCCCGAAGTTACAGTGGAG
1 ATCCTATCTCCCTGAAGTTACAGTGGAG
26529850 TGGATTAAAG
Statistics
Matches: 119, Mismatches: 27, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
41 4 0.03
42 59 0.50
43 52 0.44
44 4 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (44 bp):
ATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAG
Found at i:26529795 original size:85 final size:86
Alignment explanation
Indices: 26529652--26529858 Score: 366
Period size: 85 Copynumber: 2.4 Consensus size: 86
26529642 TTAATTGGTC
26529652 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATT-AAATAAGAGATCTTATCTCCTGAGATTACA
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGAGATCTTATCTCCTGAGATTACA
26529716 GCGGAGCAGATCGAAGACACT
66 GCGGAGCAGATCGAAGACACT
26529737 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAAT-AGAGAT-TTATCTCCCTGAGATTAC
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGAGATCTTATCT-CCTGAGATTAC
26529800 AGCGGAGCAGATCGAAGACACT
65 AGCGGAGCAGATCGAAGACACT
* *
26529822 ATCCTATCTCCCCGAAGTTACAGTGGAGTGGATTAAA
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAA
26529859 GGATCTTATC
Statistics
Matches: 118, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
84 6 0.05
85 108 0.92
86 4 0.03
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (86 bp):
ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGAGATCTTATCTCCTGAGATTACA
GCGGAGCAGATCGAAGACACT
Found at i:26530696 original size:20 final size:20
Alignment explanation
Indices: 26530671--26530710 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26530661 CATGACGGAA
26530671 GCAGC-AACAGAAACAGAAAC
1 GCAGCAAACAGAAACA-AAAC
*
26530691 GCAGCAAACAGTAACAAAAC
1 GCAGCAAACAGAAACAAAAC
26530711 AACAATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.55, C:0.25, G:0.17, T:0.03
Consensus pattern (20 bp):
GCAGCAAACAGAAACAAAAC
Found at i:26531597 original size:3 final size:3
Alignment explanation
Indices: 26531589--26531620 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
26531579 TTTGTTAACT
26531589 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26531621 TATTTTCCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:26537108 original size:11 final size:11
Alignment explanation
Indices: 26537092--26537156 Score: 64
Period size: 11 Copynumber: 6.0 Consensus size: 11
26537082 AATTAATCAC
26537092 ATTAATATTAA
1 ATTAATATTAA
26537103 ATTAATA--AA
1 ATTAATATTAA
* *
26537112 A-TATTATCAA
1 ATTAATATTAA
*
26537122 GATAAATATTAA
1 -ATTAATATTAA
26537134 ATTAATATTAA
1 ATTAATATTAA
26537145 TATTAATATTAA
1 -ATTAATATTAA
26537157 TTGTTTCTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
8 4 0.09
9 3 0.07
10 2 0.05
11 18 0.41
12 17 0.39
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (11 bp):
ATTAATATTAA
Found at i:26537145 original size:6 final size:6
Alignment explanation
Indices: 26537126--26537157 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
26537116 TATCAAGATA
26537126 AATATT AA-ATT AATATT AATATT AATATT AAT
1 AATATT AATATT AATATT AATATT AATATT AAT
26537158 TGTTTCTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
AATATT
Found at i:26537152 original size:23 final size:22
Alignment explanation
Indices: 26537092--26537156 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 22
26537082 AATTAATCAC
26537092 ATTAATATTAAATTAATA--AA
1 ATTAATATTAAATTAATATTAA
* * *
26537112 A-TATTATCAAGATAAATATTAA
1 ATTAATATTAA-ATTAATATTAA
26537134 ATTAATATTAATATTAATATTAA
1 ATTAATATTAA-ATTAATATTAA
26537157 TTGTTTCTTG
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
19 7 0.21
20 7 0.21
22 3 0.09
23 17 0.50
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
ATTAATATTAAATTAATATTAA
Found at i:26537655 original size:49 final size:51
Alignment explanation
Indices: 26537554--26537659 Score: 153
Period size: 49 Copynumber: 2.1 Consensus size: 51
26537544 AAAAGCTAAA
* * *
26537554 TAAATAAAAATGAGATTCTATTAGATTAATTATCTTTTTGAAGTTAAAAATC
1 TAAATAAAAATGAAATTCAATTAGATTAATTA-CTTTTTGAACTTAAAAATC
*
26537606 TAAATAAAAAT-AAATTCAATTAGATTAATTA-TTTTTGAACTTATAAATC
1 TAAATAAAAATGAAATTCAATTAGATTAATTACTTTTTGAACTTAAAAATC
26537655 TAAAT
1 TAAAT
26537660 TTGACTCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
49 21 0.42
51 18 0.36
52 11 0.22
ACGTcount: A:0.47, C:0.06, G:0.07, T:0.41
Consensus pattern (51 bp):
TAAATAAAAATGAAATTCAATTAGATTAATTACTTTTTGAACTTAAAAATC
Found at i:26538580 original size:12 final size:12
Alignment explanation
Indices: 26538563--26538587 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26538553 GTAAAACACT
26538563 TAAATAATATTA
1 TAAATAATATTA
26538575 TAAATAATATTA
1 TAAATAATATTA
26538587 T
1 T
26538588 GTTGGAGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAATAATATTA
Found at i:26544084 original size:18 final size:19
Alignment explanation
Indices: 26544063--26544099 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
26544053 AGAAAAAAAT
26544063 AAATATG-CATATATATAA
1 AAATATGACATATATATAA
26544081 AAATATGTACATATATATA
1 AAATATG-ACATATATATA
26544100 TGTAGGTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.35
Consensus pattern (19 bp):
AAATATGACATATATATAA
Found at i:26545807 original size:25 final size:28
Alignment explanation
Indices: 26545762--26545816 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
26545752 TTAAGAACAC
*
26545762 ATATATATTATATAAAGAAAT-ATGTAT
1 ATATATACTATATAAAGAAATCATGTAT
26545789 ATATATACTATAT-AA-AAATGCATGTAT
1 ATATATACTATATAAAGAAAT-CATGTAT
26545816 A
1 A
26545817 AGTTTAGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 4 0.16
26 2 0.08
27 19 0.76
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (28 bp):
ATATATACTATATAAAGAAATCATGTAT
Found at i:26546499 original size:18 final size:19
Alignment explanation
Indices: 26546472--26546510 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
26546462 TTGTTTTAGG
* *
26546472 TAAAATAAAATGAAA-AAA
1 TAAAAGAAAATAAAAGAAA
26546490 TAAAAGAAAATAAAAGAAA
1 TAAAAGAAAATAAAAGAAA
26546509 TA
1 TA
26546511 TATAAACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (19 bp):
TAAAAGAAAATAAAAGAAA
Found at i:26549695 original size:19 final size:19
Alignment explanation
Indices: 26549671--26549714 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
26549661 TTATTAAAAT
26549671 ATTATAACAAATT-TAGAAA
1 ATTATAA-AAATTATAGAAA
26549690 ATTATAAAAATTATAGAAA
1 ATTATAAAAATTATAGAAA
*
26549709 AATATA
1 ATTATA
26549715 TTTTATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (19 bp):
ATTATAAAAATTATAGAAA
Found at i:26562165 original size:42 final size:41
Alignment explanation
Indices: 26562106--26562188 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 41
26562096 CATGTTATAA
26562106 TCATATACGATGCCAATGTCCCAGACATGGTCTTACACAAATC
1 TCATATACGATGCCAATGTCCCA-ACATGGTCTTAC-CAAATC
*
26562149 TCATAT-CGATGCCAATGTCCCAATATGGTCTTACCAAATC
1 TCATATACGATGCCAATGTCCCAACATGGTCTTACCAAATC
26562189 ATACCTCGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
40 6 0.15
41 11 0.28
42 16 0.41
43 6 0.15
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (41 bp):
TCATATACGATGCCAATGTCCCAACATGGTCTTACCAAATC
Found at i:26566970 original size:29 final size:29
Alignment explanation
Indices: 26566915--26566972 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
26566905 AATTTTTTAA
***
26566915 AAAATTTAAAAAAGTATTTTAAAATATTT
1 AAAATTTAAAAAAGTATAAAAAAATATTT
26566944 AAAATTTAAAAAA-TATAAAAAATATATTT
1 AAAATTTAAAAAAGTATAAAAAA-ATATTT
26566973 TTTTATATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (29 bp):
AAAATTTAAAAAAGTATAAAAAAATATTT
Found at i:26569561 original size:22 final size:22
Alignment explanation
Indices: 26569533--26569577 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
26569523 CACTTCGCAT
26569533 AGAGTGTTTGTTTTAAGAAGTA
1 AGAGTGTTTGTTTTAAGAAGTA
26569555 AGAGTGTTTGTTTTAAGAAGTA
1 AGAGTGTTTGTTTTAAGAAGTA
26569577 A
1 A
26569578 AAAATAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (22 bp):
AGAGTGTTTGTTTTAAGAAGTA
Found at i:26573232 original size:20 final size:18
Alignment explanation
Indices: 26573177--26573232 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 18
26573167 TAATTTTTAA
26573177 TAAAAAATTAAAAT-TAG
1 TAAAAAATTAAAATATAG
* *
26573194 AAAAAAATTAAAAAAATAG
1 TAAAAAATT-AAAATATAG
26573213 TAAAAAATATAAAGATATAG
1 TAAAAAAT-TAAA-ATATAG
26573233 AAATATAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
17 8 0.26
18 4 0.13
19 13 0.42
20 6 0.19
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (18 bp):
TAAAAAATTAAAATATAG
Found at i:26578608 original size:45 final size:45
Alignment explanation
Indices: 26578538--26578638 Score: 168
Period size: 45 Copynumber: 2.2 Consensus size: 45
26578528 GTAACGGTAG
26578538 CAGTAACAGTAACAGTATTCAACACACAAAGTG-CTGAATCTGTAA
1 CAGTAACAGTAACAGTATTCAACACACAAAGTGTC-GAATCTGTAA
* *
26578583 TAGTAACAGTAACAGTATTCGACACACAAAGTGTCGAATCTGTAA
1 CAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCTGTAA
26578628 CAGTAACAGTA
1 CAGTAACAGTA
26578639 GTTGGCATAT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
45 51 0.98
46 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.23
Consensus pattern (45 bp):
CAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCTGTAA
Found at i:26579891 original size:30 final size:29
Alignment explanation
Indices: 26579857--26579913 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
26579847 TTATCAAATA
26579857 AATAAA-ATCTTTTAATATAATAATTTAATT
1 AATAAATATCTTTTAAT-TAA-AATTTAATT
* *
26579887 AATAAATTTCTTTTACTTAAAATTTAA
1 AATAAATATCTTTTAATTAAAATTTAA
26579914 GAAAATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 7 0.29
30 9 0.38
31 8 0.33
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (29 bp):
AATAAATATCTTTTAATTAAAATTTAATT
Found at i:26580037 original size:17 final size:16
Alignment explanation
Indices: 26580006--26580049 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
26579996 GATTTATTTA
26580006 ATAATATAATATCATT
1 ATAATATAATATCATT
*
26580022 ATAATTTAATTATCATT
1 ATAATATAA-TATCATT
*
26580039 AATTATATAAT
1 -ATAATATAAT
26580050 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 8 0.35
17 8 0.35
18 7 0.30
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAATATAATATCATT
Found at i:26587957 original size:18 final size:19
Alignment explanation
Indices: 26587914--26587957 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
26587904 TACGTTTATT
*
26587914 TTATTTAAATTAAGATTTA
1 TTATTTAAATTAAGATGTA
* *
26587933 TTTTTTAAATTTA-ATGTA
1 TTATTTAAATTAAGATGTA
26587951 TTATTTA
1 TTATTTA
26587958 TTTTATTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TTATTTAAATTAAGATGTA
Found at i:26589590 original size:25 final size:25
Alignment explanation
Indices: 26589562--26589702 Score: 98
Period size: 25 Copynumber: 5.8 Consensus size: 25
26589552 CAGCTCTTAT
*
26589562 GAGCATCCCAATATATGGCTCTCTG
1 GAGCTTCCCAATATATGGCTCTCTG
* * *
26589587 GAGCTTCCCGATATA--GCTCGCTT
1 GAGCTTCCCAATATATGGCTCTCTG
* * *
26589610 GAACTTCCTAATATATGGCTATCTG
1 GAGCTTCCCAATATATGGCTCTCTG
*
26589635 GAGCTTCCTAAT-TAATGGCTCT-TCG
1 GAGCTTCCCAATAT-ATGGCTCTCT-G
* * *
26589660 GAGCTACCCATTAT-TGGCTCGCAT-
1 GAGCTTCCCAATATATGGCTCTC-TG
*
26589684 GAGCTTCCCGAT-TATGGCT
1 GAGCTTCCCAATATATGGCT
26589703 TTTATGAGCT
Statistics
Matches: 89, Mismatches: 19, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
23 19 0.21
24 22 0.25
25 46 0.52
26 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (25 bp):
GAGCTTCCCAATATATGGCTCTCTG
Found at i:26589687 original size:24 final size:24
Alignment explanation
Indices: 26589660--26589721 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
26589650 TGGCTCTTCG
*
26589660 GAGCTACCCATTATTGGCTCGCAT
1 GAGCTTCCCATTATTGGCTCGCAT
***
26589684 GAGCTTCCCGATTA-TGGCTTTTAT
1 GAGCTTCCC-ATTATTGGCTCGCAT
26589708 GAGCTTCCCATTAT
1 GAGCTTCCCATTAT
26589722 ACAACCCAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 4 0.12
24 24 0.75
25 4 0.12
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.35
Consensus pattern (24 bp):
GAGCTTCCCATTATTGGCTCGCAT
Found at i:26594801 original size:14 final size:14
Alignment explanation
Indices: 26594784--26594810 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26594774 ATTTAATTCT
26594784 TGAAAATTAAAATG
1 TGAAAATTAAAATG
26594798 TGAAAATTAAAAT
1 TGAAAATTAAAAT
26594811 ATTTGTGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (14 bp):
TGAAAATTAAAATG
Found at i:26596271 original size:24 final size:24
Alignment explanation
Indices: 26596204--26596277 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 24
26596194 TAAGTCATAT
26596204 ATTAGATATTA-ATAATATAATAACA
1 ATTA-ATATTACA-AATATAATAACA
* **
26596229 ATTACTATTAC-TTTGATAATAACA
1 ATTAATATTACAAAT-ATAATAACA
26596253 ATTAATATTACAAATATAAT-ACA
1 ATTAATATTACAAATATAATAACA
26596276 AT
1 AT
26596278 ATAGTGTATC
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
23 6 0.15
24 29 0.73
25 5 0.12
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (24 bp):
ATTAATATTACAAATATAATAACA
Found at i:26599030 original size:21 final size:21
Alignment explanation
Indices: 26599006--26599050 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
26598996 GGTCTAAACA
26599006 CCCATATGAAGGCCACACACG
1 CCCATATGAAGGCCACACACG
* * **
26599027 CCCATGTGGAGGGGACACACG
1 CCCATATGAAGGCCACACACG
26599048 CCC
1 CCC
26599051 GTGTGAGTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.38, G:0.27, T:0.09
Consensus pattern (21 bp):
CCCATATGAAGGCCACACACG
Found at i:26599141 original size:21 final size:21
Alignment explanation
Indices: 26599108--26599147 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26599098 TGCAGAGTAG
26599108 ACACGACCATGTGAAAATCTC
1 ACACGACCATGTGAAAATCTC
* *
26599129 ACACGCCCGTGTGAAAATC
1 ACACGACCATGTGAAAATC
26599148 GACAAAATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.30, G:0.17, T:0.17
Consensus pattern (21 bp):
ACACGACCATGTGAAAATCTC
Found at i:26611225 original size:17 final size:18
Alignment explanation
Indices: 26611205--26611242 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
26611195 TTTTTATTAA
26611205 AATT-ATTTAAAATATAT
1 AATTAATTTAAAATATAT
*
26611222 AATTAAATTTTAAATATAT
1 AATT-AATTTAAAATATAT
26611241 AA
1 AA
26611243 AGAATATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AATTAATTTAAAATATAT
Found at i:26612891 original size:18 final size:18
Alignment explanation
Indices: 26612864--26612956 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
26612854 TACGACCGTT
26612864 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
26612882 TACGGCACTATTTACGTA
1 TACGGTACTATTCACGTA
*
26612900 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
26612918 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
26612936 TACGATACTGTTCACGTA
1 TACGGTACTATTCACGTA
26612954 TAC
1 TAC
26612957 AGTAGTTGGG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:26618182 original size:30 final size:30
Alignment explanation
Indices: 26618131--26618205 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
26618121 GATTCCATAG
* *
26618131 GTCCCTGTATGTTTCATAAATTTAATATTTA
1 GTCCCTGTAT-TTTTATAAATTTAAAATTTA
26618162 GTCCCTGTATTTTTATAAATTTAAAATTTA
1 GTCCCTGTATTTTTATAAATTTAAAATTTA
* *
26618192 GTCTCTTTATTTTT
1 GTCCCTGTATTTTT
26618206 TAATTTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 30 0.75
31 10 0.25
ACGTcount: A:0.27, C:0.12, G:0.08, T:0.53
Consensus pattern (30 bp):
GTCCCTGTATTTTTATAAATTTAAAATTTA
Found at i:26618219 original size:30 final size:30
Alignment explanation
Indices: 26618131--26618221 Score: 96
Period size: 30 Copynumber: 3.0 Consensus size: 30
26618121 GATTCCATAG
*
26618131 GTCCCTGTATGTTTCATAAA-TTTAATATTTA
1 GTCCCTGTAT-TTTTATAAATTTTAA-ATTTA
*
26618162 GTCCCTGTATTTTTATAAATTTAAAATTTA
1 GTCCCTGTATTTTTATAAATTTTAAATTTA
* * *
26618192 GTCTCTTTATTTTT-TAATTTTTTAAATTTA
1 GTCCCTGTATTTTTATAA-ATTTTAAATTTA
26618222 AGTTTAATAG
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
29 3 0.06
30 35 0.67
31 14 0.27
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.55
Consensus pattern (30 bp):
GTCCCTGTATTTTTATAAATTTTAAATTTA
Found at i:26618476 original size:20 final size:20
Alignment explanation
Indices: 26618451--26618490 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26618441 CGTAAAATGA
*
26618451 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
26618471 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
26618491 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:26618480 original size:34 final size:35
Alignment explanation
Indices: 26618436--26618502 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
26618426 CAGTAAAATA
*
26618436 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
26618470 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
26618503 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:26618506 original size:14 final size:15
Alignment explanation
Indices: 26618430--26618506 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
26618420 GATTGCCAGT
* *
26618430 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
26618444 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
26618458 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
26618478 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
26618493 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
26618507 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:26620913 original size:34 final size:35
Alignment explanation
Indices: 26620855--26620921 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
26620845 CAAACATCAG
26620855 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
26620890 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
26620922 TATTTTACTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:26623453 original size:21 final size:19
Alignment explanation
Indices: 26623429--26623481 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
26623419 ATTGGAATAT
26623429 AATATTTAATTATTATATTTA
1 AATATTTAATTA-T-TATTTA
*
26623450 AATATTTAAATATTATTTA
1 AATATTTAATTATTATTTA
*
26623469 TATATTCTAATTA
1 AATATT-TAATTA
26623482 AATTTAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 11 0.39
20 6 0.21
21 11 0.39
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
AATATTTAATTATTATTTA
Found at i:26623736 original size:13 final size:13
Alignment explanation
Indices: 26623718--26623755 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
26623708 CTCAAATTTT
*
26623718 TCAAAAGCACTTC
1 TCAAAAGTACTTC
26623731 TCAAAAGTACTTC
1 TCAAAAGTACTTC
26623744 TCAAAAGTACTT
1 TCAAAAGTACTT
26623756 TTCCATAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (13 bp):
TCAAAAGTACTTC
Found at i:26624130 original size:9 final size:10
Alignment explanation
Indices: 26624116--26624151 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
26624106 TATTTAATCA
26624116 TTTCCTTTC-
1 TTTCCTTTCT
26624125 TTTCCTTTCT
1 TTTCCTTTCT
*
26624135 TTTACTTTCT
1 TTTCCTTTCT
26624145 TTTCCTT
1 TTTCCTT
26624152 CACAATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTCCTTTCT
Done.