Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 73 of 208
Found at i:26627644 original size:13 final size:13
Alignment explanation
Indices: 26627628--26627653 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26627618 AAATTTCTAA
26627628 ATATTTTATAATT
1 ATATTTTATAATT
26627641 ATATTTTATAATT
1 ATATTTTATAATT
26627654 TTTTTAGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATATTTTATAATT
Found at i:26634555 original size:20 final size:20
Alignment explanation
Indices: 26634530--26634569 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26634520 CATGACGGAA
26634530 GCAGC-AACAGAAACAGAAAC
1 GCAGCAAACAGAAACA-AAAC
*
26634550 GCAGCAAACAGTAACAAAAC
1 GCAGCAAACAGAAACAAAAC
26634570 AACAATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.55, C:0.25, G:0.17, T:0.03
Consensus pattern (20 bp):
GCAGCAAACAGAAACAAAAC
Found at i:26634721 original size:13 final size:13
Alignment explanation
Indices: 26634703--26634728 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26634693 ATCTCTTCTC
26634703 TGTTTATTTTTAT
1 TGTTTATTTTTAT
26634716 TGTTTATTTTTAT
1 TGTTTATTTTTAT
26634729 CTTCTACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (13 bp):
TGTTTATTTTTAT
Found at i:26637904 original size:19 final size:20
Alignment explanation
Indices: 26637864--26637907 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
26637854 GTCTCTTTAG
* *
26637864 GCATT-CATTTCATGCATCT
1 GCATTACATTGCATGCATAT
26637883 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
26637902 GCATTA
1 GCATTA
26637908 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:26642798 original size:44 final size:44
Alignment explanation
Indices: 26642749--26642975 Score: 149
Period size: 44 Copynumber: 5.2 Consensus size: 44
26642739 AGTTACAGAT
26642749 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
* * * ** * * * * *
26642793 CTTGCC-TCTTTCGGTTGTGATG-G-AGCTGGTTGAAGACAAAAGAT
1 CTTGCCTTCCTGC-ATTGACA-GCGAAGCAGATCGAAGACACAA-AC
* *
26642837 CTTGCTTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
* * * ** ** * * * * *
26642881 CTTGCC-TCTTTCGGTTGTGATAG-AGCTGGTTGAAGACAAAAGAT
1 CTTGCCTTCCTGC-ATTGACAGCGAAGCAGATCGAAGACACAA-AC
*
26642925 CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
26642969 CTTGCCT
1 CTTGCCT
26642976 CTTTCGGTTG
Statistics
Matches: 125, Mismatches: 48, Indels: 20
0.65 0.25 0.10
Matches are distributed among these distances:
43 36 0.29
44 53 0.42
45 36 0.29
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (44 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
Found at i:26643017 original size:44 final size:44
Alignment explanation
Indices: 26642793--26643019 Score: 169
Period size: 44 Copynumber: 5.2 Consensus size: 44
26642783 AGACACAAAC
*
26642793 CTTGCCTCTTTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
** * * * * * *
26642837 CTTG-CT-TTTCTGCAT-TGACAGCGAAGCAGATCGAAGACACAA-AC
1 CTTGCCTCTTTC-GGTTGTGATA--G-AGCTGGTTGAAGACAAAAGAT
26642881 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
* * * ** ** * * * * *
26642925 CTTGCCTTCCTAC-ATTGACAGCGAAGCAGATCGAAGACACAA-AC
1 CTTGCC-TCTTTCGGTTGTGATAG-AGCTGGTTGAAGACAAAAGAT
26642969 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
26643013 CTTGCCT
1 CTTGCCT
26643020 TCCTACATTA
Statistics
Matches: 130, Mismatches: 41, Indels: 24
0.67 0.21 0.12
Matches are distributed among these distances:
42 7 0.05
43 36 0.28
44 43 0.33
45 36 0.28
46 8 0.06
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (44 bp):
CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
Found at i:26643176 original size:86 final size:88
Alignment explanation
Indices: 26642745--26643172 Score: 573
Period size: 88 Copynumber: 4.9 Consensus size: 88
26642735 ATGAAGTTAC
26642745 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
26642810 TGATGGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* *
26642833 AGATCTTGCTTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
*
26642898 TGATAGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
*
26642921 AGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
*
26642986 TGATAGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* * * ** *
26643009 AGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCGTCCATCGATT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTTTCGGTT
* * * **
26643072 G-CAGTGGAGCTAGTTAAAGA-AGC
65 GTGA-TGGAGCTGGTTGAAGACAAA
* * * **
26643095 AGATCTTGCCTTCCTGCATTAACAGCAAAGCAGATC-AA-AAACAAAGCCTTGCCTCCATCGGTT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTTTCGGTT
*
26643158 G-CATTGGAGCTGGTT
65 GTGA-TGGAGCTGGTT
26643173 AAAGGTTACA
Statistics
Matches: 314, Mismatches: 23, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
85 3 0.01
86 75 0.24
87 28 0.09
88 208 0.66
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
TGATGGAGCTGGTTGAAGACAAA
Found at i:26643408 original size:44 final size:42
Alignment explanation
Indices: 26643356--26643770 Score: 257
Period size: 44 Copynumber: 9.7 Consensus size: 42
26643346 AAAGCCAGAG
*
26643356 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATCAAGGATAGT
1 ATCTTATCTCCCTGAAATTACAGTGGAGCAGATCAA-GATAGT
* * * * * * *
26643399 AATCCTATCTCCTTGAGATTACAATGGAGCGGAT-TA-A-AGG
1 -ATCTTATCTCCCTGAAATTACAGTGGAGCAGATCAAGATAGT
* * * * *
26643439 ATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACG-TCAG-
1 ATCTTATCTCCCTGAAATTACAGTGGAGCAGATCAAGAT-AGT
* * * *
26643480 GTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAG-
1 ATCTTATCTCCCTGAAATTACAGTGGAGCAGATC-AAG-A--T-AGT
* * * *
26643526 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT
1 ATCTTATCTCCCTGAAATTACAGTGGAGCAGATC-AAGATAGT
* * * * * *
26643569 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGAG
1 ATCTTATCTCCCTGAAATTACAGTGGAGCAGATCAAGAT-AG-T
* * * *
26643613 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT
1 ATCTTATCTCCCTGAAATTACAGTGGAGCAGATC-AAGATAGT
* * * * * *
26643656 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGAG
1 ATCTTATCTCCCTGAAATTACAGTGGAGCAGATCAAGAT-AG-T
* * * *
26643700 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT
1 ATCTTATCTCCCTGAAATTACAGTGGAGCAGATC-AAGATAGT
* * *
26643743 ATCCTATCTCCCCGAAGTTACAGTGGAG
1 ATCTTATCTCCCTGAAATTACAGTGGAG
26643771 TGGATTAAAG
Statistics
Matches: 275, Mismatches: 80, Indels: 33
0.71 0.21 0.09
Matches are distributed among these distances:
39 24 0.09
40 2 0.01
41 27 0.10
42 11 0.04
43 82 0.30
44 85 0.31
45 7 0.03
46 37 0.13
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (42 bp):
ATCTTATCTCCCTGAAATTACAGTGGAGCAGATCAAGATAGT
Found at i:26643615 original size:87 final size:87
Alignment explanation
Indices: 26643524--26643816 Score: 497
Period size: 87 Copynumber: 3.4 Consensus size: 87
26643514 AAAGAATTTC
26643524 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
26643589 CAGTGGAGCGGATTAAAATAAG
66 CAGTGGAGCGGATTAAAATAAG
26643611 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
26643676 CAGTGGAGCGGATTAAAATAAG
66 CAGTGGAGCGGATTAAAATAAG
*
26643698 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCCGAAGTTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
*
26643763 CAGTGGAGTGGATT---A-AAG
66 CAGTGGAGCGGATTAAAATAAG
* * * *
26643781 -GATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCG
26643817 CATCAAGTCT
Statistics
Matches: 200, Mismatches: 6, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
82 32 0.16
83 3 0.01
84 1 0.00
87 164 0.82
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25
Consensus pattern (87 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
CAGTGGAGCGGATTAAAATAAG
Found at i:26643711 original size:174 final size:170
Alignment explanation
Indices: 26643352--26643816 Score: 557
Period size: 174 Copynumber: 2.7 Consensus size: 170
26643342 AACTAAAGCC
* * * *
26643352 AGAGATCTTATCTCCCTGAAATTACAGCGGAGCAGATC-AAGGATAGTAATCCTATCTCCTTG-A
1 AGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAA-GACACT-ATCCTATCTCCCTGAA
* * * *
26643415 GATTACAATGGAGCGGATTAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC-ACGTC
64 G-TTACAGTGGAGCGGATTAAAGGATCTTATCTCTCTGAGA-TTACAGCAGAGAAGATCGAAGAC
* * *
26643478 AGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATT
127 AGATCCTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATA
**
26643522 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGT
1 AGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGT
* * *
26643587 TACAGTGGAGCGGATTAAAATAAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
66 TACAGTGGAGCGGATT---A-AAG-GATCTTATCTCTCTGAGATTACAGCAGAGAAGATCGAAGA
* * * **
26643652 CACTATCCTATCTCCCTGA-AGTTACAGTGGAGCGGA-TTAA-AATA
126 CA-GATCCTATCTCCCTGAGA-TTACAGTGGAACAGACCAAAGAATA
*
26643696 AGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCCGAAGT
1 AGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGT
* * *
26643761 TACAGTGGAGTGGATTAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCG
66 TACAGTGGAGCGGATTAAAGGATCTTATCTCTCTGAGATTACAGCAGAGAAGATCG
26643817 CATCAAGTCT
Statistics
Matches: 255, Mismatches: 29, Indels: 23
0.83 0.09 0.07
Matches are distributed among these distances:
169 61 0.24
170 44 0.17
171 3 0.01
172 1 0.00
173 3 0.01
174 109 0.43
175 8 0.03
176 26 0.10
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (170 bp):
AGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGT
TACAGTGGAGCGGATTAAAGGATCTTATCTCTCTGAGATTACAGCAGAGAAGATCGAAGACAGAT
CCTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATA
Found at i:26643765 original size:43 final size:43
Alignment explanation
Indices: 26643530--26643754 Score: 224
Period size: 43 Copynumber: 5.2 Consensus size: 43
26643520 TTTCAGATCT
26643530 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
1 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
* * * * * ** *
26643573 TATCTCCCTGA-AGTTACAGTGGAGCGGAT-TAAAATAAGAGATCT
1 TATCTCCCTGAGA-TTACAGCGGAGCAGATCGAAGA-CA-CTATCC
26643617 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
1 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
* * * * * ** *
26643660 TATCTCCCTGA-AGTTACAGTGGAGCGGAT-TAAAATAAGAGATCT
1 TATCTCCCTGAGA-TTACAGCGGAGCAGATCGAAGA-CA-CTATCC
26643704 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
1 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
26643747 TATCTCCC
1 TATCTCCC
26643755 CGAAGTTACA
Statistics
Matches: 140, Mismatches: 32, Indels: 20
0.73 0.17 0.10
Matches are distributed among these distances:
42 8 0.06
43 66 0.47
44 58 0.41
45 8 0.06
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (43 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
Found at i:26644623 original size:20 final size:20
Alignment explanation
Indices: 26644598--26644637 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26644588 CATGACGGAA
26644598 GCAGC-AACAGAAACAGAAAC
1 GCAGCAAACAGAAACA-AAAC
*
26644618 GCAGCAAACAGTAACAAAAC
1 GCAGCAAACAGAAACAAAAC
26644638 AACAATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.55, C:0.25, G:0.17, T:0.03
Consensus pattern (20 bp):
GCAGCAAACAGAAACAAAAC
Found at i:26644790 original size:13 final size:13
Alignment explanation
Indices: 26644772--26644797 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26644762 ATCTCTTCTC
26644772 TGTTTATTTTTAT
1 TGTTTATTTTTAT
26644785 TGTTTATTTTTAT
1 TGTTTATTTTTAT
26644798 CTTCTACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (13 bp):
TGTTTATTTTTAT
Found at i:26645546 original size:3 final size:3
Alignment explanation
Indices: 26645538--26645572 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
26645528 TTTGTTAACT
26645538 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26645573 TTCCTTTTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:26651057 original size:11 final size:11
Alignment explanation
Indices: 26651041--26651105 Score: 64
Period size: 11 Copynumber: 6.0 Consensus size: 11
26651031 AATTAATCAC
26651041 ATTAATATTAA
1 ATTAATATTAA
26651052 ATTAATA--AA
1 ATTAATATTAA
* *
26651061 A-TATTATCAA
1 ATTAATATTAA
*
26651071 GATAAATATTAA
1 -ATTAATATTAA
26651083 ATTAATATTAA
1 ATTAATATTAA
26651094 TATTAATATTAA
1 -ATTAATATTAA
26651106 TTGTTTCTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
8 4 0.09
9 3 0.07
10 2 0.05
11 18 0.41
12 17 0.39
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (11 bp):
ATTAATATTAA
Found at i:26651094 original size:6 final size:6
Alignment explanation
Indices: 26651075--26651106 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
26651065 TATCAAGATA
26651075 AATATT AA-ATT AATATT AATATT AATATT AAT
1 AATATT AATATT AATATT AATATT AATATT AAT
26651107 TGTTTCTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
AATATT
Found at i:26651101 original size:23 final size:22
Alignment explanation
Indices: 26651041--26651105 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 22
26651031 AATTAATCAC
26651041 ATTAATATTAAATTAATA--AA
1 ATTAATATTAAATTAATATTAA
* * *
26651061 A-TATTATCAAGATAAATATTAA
1 ATTAATATTAA-ATTAATATTAA
26651083 ATTAATATTAATATTAATATTAA
1 ATTAATATTAA-ATTAATATTAA
26651106 TTGTTTCTTG
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
19 7 0.21
20 7 0.21
22 3 0.09
23 17 0.50
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
ATTAATATTAAATTAATATTAA
Found at i:26651575 original size:52 final size:50
Alignment explanation
Indices: 26651500--26651606 Score: 151
Period size: 52 Copynumber: 2.1 Consensus size: 50
26651490 AAAAGCTAAA
* * * *
26651500 TAAATAAAAATGAGATTCTATTAGATTAATTATCTTTTTGAAGTTAAAAATC
1 TAAATAAAAATAAAATTCAATTAGATTAATTA--TTTTTGAACTTAAAAATC
*
26651552 TAAATAAAAATAAAATTCAATTAGATTAATTATTTTTGAACTTATAAATC
1 TAAATAAAAATAAAATTCAATTAGATTAATTATTTTTGAACTTAAAAATC
26651602 TAAAT
1 TAAAT
26651607 TTGACTCAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
50 21 0.42
52 29 0.58
ACGTcount: A:0.48, C:0.06, G:0.07, T:0.40
Consensus pattern (50 bp):
TAAATAAAAATAAAATTCAATTAGATTAATTATTTTTGAACTTAAAAATC
Found at i:26652522 original size:12 final size:12
Alignment explanation
Indices: 26652505--26652529 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26652495 GTAAAACACT
26652505 TAAATAATATTA
1 TAAATAATATTA
26652517 TAAATAATATTA
1 TAAATAATATTA
26652529 T
1 T
26652530 GTTGGAGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAATAATATTA
Found at i:26658037 original size:18 final size:19
Alignment explanation
Indices: 26658016--26658052 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
26658006 AGAAAAAAAT
26658016 AAATATG-CATATATATAA
1 AAATATGACATATATATAA
26658034 AAATATGTACATATATATA
1 AAATATG-ACATATATATA
26658053 TGTAGGTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.35
Consensus pattern (19 bp):
AAATATGACATATATATAA
Found at i:26659754 original size:25 final size:28
Alignment explanation
Indices: 26659709--26659763 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
26659699 TTAAGAACAC
*
26659709 ATATATATTATATAAAGAAAT-ATGTAT
1 ATATATACTATATAAAGAAATCATGTAT
26659736 ATATATACTATAT-AA-AAATGCATGTAT
1 ATATATACTATATAAAGAAAT-CATGTAT
26659763 A
1 A
26659764 AGTTTAGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 4 0.16
26 2 0.08
27 19 0.76
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (28 bp):
ATATATACTATATAAAGAAATCATGTAT
Found at i:26660447 original size:18 final size:19
Alignment explanation
Indices: 26660420--26660458 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
26660410 TTGTTTTAGG
* *
26660420 TAAAATAAAATGAAA-AAA
1 TAAAAGAAAATAAAAGAAA
26660438 TAAAAGAAAATAAAAGAAA
1 TAAAAGAAAATAAAAGAAA
26660457 TA
1 TA
26660459 TATAAACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (19 bp):
TAAAAGAAAATAAAAGAAA
Found at i:26663642 original size:19 final size:19
Alignment explanation
Indices: 26663618--26663661 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
26663608 TTATTAAAAT
26663618 ATTATAACAAATT-TAGAAA
1 ATTATAA-AAATTATAGAAA
26663637 ATTATAAAAATTATAGAAA
1 ATTATAAAAATTATAGAAA
*
26663656 AATATA
1 ATTATA
26663662 TTTTATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (19 bp):
ATTATAAAAATTATAGAAA
Found at i:26663839 original size:15 final size:15
Alignment explanation
Indices: 26663797--26663845 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
26663787 ATATTACAAA
26663797 AAAAAACTGAAAGAATT
1 AAAAAACT-AAA-AATT
* **
26663814 AGAAATTTAAAAATT
1 AAAAAACTAAAAATT
26663829 AAAAAACTAAAAATT
1 AAAAAACTAAAAATT
26663844 AA
1 AA
26663846 CATTTAAGCA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
15 18 0.69
16 3 0.12
17 5 0.19
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.22
Consensus pattern (15 bp):
AAAAAACTAAAAATT
Found at i:26665384 original size:21 final size:20
Alignment explanation
Indices: 26665359--26665398 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
26665349 GTAGTAATTC
*
26665359 TTATGATTTTTATAATTTTTT
1 TTATG-TTTTTATAAATTTTT
26665380 TTATGTTTTTATAAATTTT
1 TTATGTTTTTATAAATTTT
26665399 GAAGTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (20 bp):
TTATGTTTTTATAAATTTTT
Found at i:26665390 original size:20 final size:22
Alignment explanation
Indices: 26665359--26665398 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
26665349 GTAGTAATTC
26665359 TTATGATTTTTAT-AATTTTTT
1 TTATGATTTTTATAAATTTTTT
26665380 TTATG-TTTTTATAAATTTT
1 TTATGATTTTTATAAATTTT
26665399 GAAGTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (22 bp):
TTATGATTTTTATAAATTTTTT
Found at i:26665409 original size:29 final size:27
Alignment explanation
Indices: 26665378--26665451 Score: 73
Period size: 25 Copynumber: 2.8 Consensus size: 27
26665368 TTATAATTTT
*
26665378 TTTTATGTTT-TTATAAATTTTGAAGTAA
1 TTTTATATTTGTTAT-AATTTTGAA-TAA
*
26665406 TTTTATATTTGTTATAATTTTTAATAA
1 TTTTATATTTGTTATAATTTTGAATAA
* *
26665433 --TTATTTTTATTATAATTTT
1 TTTTATATTTGTTATAATTTT
26665452 AGCCAACTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 17 0.41
27 3 0.07
28 17 0.41
29 4 0.10
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (27 bp):
TTTTATATTTGTTATAATTTTGAATAA
Found at i:26665424 original size:28 final size:26
Alignment explanation
Indices: 26665378--26665451 Score: 71
Period size: 28 Copynumber: 2.8 Consensus size: 26
26665368 TTATAATTTT
*
26665378 TTTTATGTTTTTATAAATTTTGAAGTAA
1 TTTTATATTTTTAT-AATTTTGAA-TAA
*
26665406 TTTTATATTTGTTATAATTTTTAATAA
1 TTTTATATTT-TTATAATTTTGAATAA
*
26665433 TTATT-T-TTATTATAATTTT
1 TT-TTATATTTTTATAATTTT
26665452 AGCCAACTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
25 10 0.24
26 2 0.05
27 6 0.15
28 19 0.46
29 4 0.10
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (26 bp):
TTTTATATTTTTATAATTTTGAATAA
Found at i:26673605 original size:41 final size:41
Alignment explanation
Indices: 26673554--26673736 Score: 172
Period size: 41 Copynumber: 4.5 Consensus size: 41
26673544 TTTAAACAGA
* ** *
26673554 TTCACTGGCACTTCA-CCTGATAGGCTTATAGTTTAATTCCG
1 TTCACCGGCACTT-AGCCTGATAGGCTTATAGCCTAATTCAG
* * *
26673595 TTCACCGGCACTTAGCCTGTTAGGCCTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGATAGGCTTATAGCCTAATTCAG
* * * * *
26673636 TTCACCAGCACTTAGCCTGCTAGGCTTGTAGCCTGATTCAA
1 TTCACCGGCACTTAGCCTGATAGGCTTATAGCCTAATTCAG
* * * * * *
26673677 CTCACCGGCACTTAGCCTGCTGGGCGTATAGTCC-GATTCAA
1 TTCACCGGCACTTAGCCTGATAGGCTTATAG-CCTAATTCAG
26673718 TTCACCGGCACTTAGCCTG
1 TTCACCGGCACTTAGCCTG
26673737 CTAGACGTAT
Statistics
Matches: 122, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 1 0.01
41 119 0.98
42 2 0.02
ACGTcount: A:0.20, C:0.30, G:0.21, T:0.30
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGATAGGCTTATAGCCTAATTCAG
Found at i:26673763 original size:41 final size:41
Alignment explanation
Indices: 26673595--26673753 Score: 212
Period size: 41 Copynumber: 3.9 Consensus size: 41
26673585 TTTAATTCCG
* * *
26673595 TTCACCGGCACTTAGCCTGTTAGGCCTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCGTATAGCCTGATTCAA
* * *
26673636 TTCACCAGCACTTAGCCTGCTAGGCTTGTAGCCTGATTCAA
1 TTCACCGGCACTTAGCCTGCTAGGCGTATAGCCTGATTCAA
* *
26673677 CTCACCGGCACTTAGCCTGCTGGGCGTATAGTCC-GATTCAA
1 TTCACCGGCACTTAGCCTGCTAGGCGTATAG-CCTGATTCAA
* *
26673718 TTCACCGGCACTTAGCCTGCTAGACGTATAGTCTGA
1 TTCACCGGCACTTAGCCTGCTAGGCGTATAGCCTGA
26673754 ATAATTTCAC
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 1 0.01
41 99 0.97
42 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.28
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGCTAGGCGTATAGCCTGATTCAA
Found at i:26676212 original size:18 final size:18
Alignment explanation
Indices: 26676176--26676214 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
26676166 TTATTATTGT
**
26676176 TAAAATTTTCTATTAAAA
1 TAAAATTTTAAATTAAAA
*
26676194 TAAAATTTTAAATTTAAA
1 TAAAATTTTAAATTAAAA
26676212 TAA
1 TAA
26676215 TTTATTATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
TAAAATTTTAAATTAAAA
Found at i:26677558 original size:22 final size:24
Alignment explanation
Indices: 26677527--26677578 Score: 72
Period size: 22 Copynumber: 2.2 Consensus size: 24
26677517 TTATAGAGTT
* *
26677527 AAAAATACTAGAT-ATATC-TATA
1 AAAAAAACTAGATAAAATCATATA
26677549 AAAAAAACTAGATAAAATCATATA
1 AAAAAAACTAGATAAAATCATATA
26677573 AAAAAA
1 AAAAAA
26677579 TTTGTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 12 0.46
23 4 0.15
24 10 0.38
ACGTcount: A:0.65, C:0.08, G:0.04, T:0.23
Consensus pattern (24 bp):
AAAAAAACTAGATAAAATCATATA
Found at i:26677759 original size:29 final size:28
Alignment explanation
Indices: 26677724--26677842 Score: 125
Period size: 29 Copynumber: 4.1 Consensus size: 28
26677714 AATCAAAAAA
26677724 TACATTTTGACCTCTAAACTTTTTGAAAT
1 TACATTTTGACC-CTAAACTTTTTGAAAT
* *
26677753 TATATTTTGACCCATAAACCTTTTGAAAT
1 TACATTTTGACCC-TAAACTTTTTGAAAT
*
26677782 TACATTTTGACCC-ATAACATTTTTTAAAT
1 TACATTTTGACCCTA-AAC-TTTTTGAAAT
*
26677811 TACATTTTTACCCCTAAA-TTTTCTCGAAAT
1 TACATTTTGA-CCCTAAACTTTT-T-GAAAT
26677841 TA
1 TA
26677843 TGTTTCAGCC
Statistics
Matches: 76, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
27 1 0.01
28 8 0.11
29 55 0.72
30 11 0.14
31 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.05, T:0.44
Consensus pattern (28 bp):
TACATTTTGACCCTAAACTTTTTGAAAT
Found at i:26678111 original size:10 final size:10
Alignment explanation
Indices: 26678092--26678141 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
26678082 TTTTTCGAAG
*
26678092 GAAAAAAGAA
1 GAAAAGAGAA
26678102 GAAAAGAGAA
1 GAAAAGAGAA
26678112 GAAAAGAGAA
1 GAAAAGAGAA
* *
26678122 -AGAGGAGAA
1 GAAAAGAGAA
26678131 GAAAAGA-AA
1 GAAAAGAGAA
26678140 GA
1 GA
26678142 GTACCGGCGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAGAGAA
Found at i:26678142 original size:17 final size:19
Alignment explanation
Indices: 26678095--26678137 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
26678085 TTCGAAGGAA
26678095 AAAAGAAGAAA-A-GAGAAG
1 AAAAG-AGAAAGAGGAGAAG
26678113 AAAAGAGAAAGAGGAGAAG
1 AAAAGAGAAAGAGGAGAAG
26678132 AAAAGA
1 AAAAGA
26678138 AAGAGTACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 6 0.26
19 12 0.52
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAGAGAAAGAGGAGAAG
Found at i:26678429 original size:17 final size:16
Alignment explanation
Indices: 26678403--26678434 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
26678393 AAAAAAAGCA
26678403 GCCCAAAAAAGAAAAG
1 GCCCAAAAAAGAAAAG
26678419 GCCCAAAAAAAGAAAA
1 GCCC-AAAAAAGAAAA
26678435 AACAGCCCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.66, C:0.19, G:0.16, T:0.00
Consensus pattern (16 bp):
GCCCAAAAAAGAAAAG
Found at i:26678555 original size:23 final size:23
Alignment explanation
Indices: 26678529--26678619 Score: 100
Period size: 23 Copynumber: 4.1 Consensus size: 23
26678519 AACAGGCCAG
*
26678529 GAAAAAAAGAGAGACAG-AAAAAA
1 GAAAAAAAGAAAGA-AGAAAAAAA
26678552 GAAAAAAAGAAAGAAGAAAAAAA
1 GAAAAAAAGAAAGAAGAAAAAAA
* * *
26678575 G-AAAAGAGAAAAAAGGAAAAAA
1 GAAAAAAAGAAAGAAGAAAAAAA
*
26678597 GGAAAAAAG-AAGAA-AAAAAAA
1 GAAAAAAAGAAAGAAGAAAAAAA
26678618 GA
1 GA
26678620 GTTTCAATTC
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
21 7 0.12
22 25 0.43
23 26 0.45
ACGTcount: A:0.78, C:0.01, G:0.21, T:0.00
Consensus pattern (23 bp):
GAAAAAAAGAAAGAAGAAAAAAA
Found at i:26678559 original size:8 final size:8
Alignment explanation
Indices: 26678546--26678615 Score: 72
Period size: 8 Copynumber: 8.8 Consensus size: 8
26678536 AGAGAGACAG
26678546 AAAAAAGA
1 AAAAAAGA
26678554 AAAAAAG-
1 AAAAAAGA
*
26678561 AAAGAAGA
1 AAAAAAGA
26678569 AAAAAAG-
1 AAAAAAGA
*
26678576 AAAAGAGA
1 AAAAAAGA
*
26678584 AAAAAGGA
1 AAAAAAGA
*
26678592 AAAAAGGAA
1 AAAAAAG-A
26678601 AAAAGAAGA
1 AAAA-AAGA
26678610 AAAAAA
1 AAAAAA
26678616 AAGAGTTTCA
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
7 12 0.23
8 28 0.54
9 10 0.19
10 2 0.04
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:26678562 original size:15 final size:15
Alignment explanation
Indices: 26678544--26678617 Score: 96
Period size: 15 Copynumber: 4.9 Consensus size: 15
26678534 AAAGAGAGAC
26678544 AGAAAAAAGAAAAAA
1 AGAAAAAAGAAAAAA
*
26678559 AGAAAGAAGAAAAAA
1 AGAAAAAAGAAAAAA
*
26678574 AGAAAAGAGAAAAAA
1 AGAAAAAAGAAAAAA
* *
26678589 GGAAAAAAGGAAAAA
1 AGAAAAAAGAAAAAA
26678604 AGAAGAAAA-AAAAA
1 AGAA-AAAAGAAAAA
26678618 GAGTTTCAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
15 46 0.92
16 4 0.08
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (15 bp):
AGAAAAAAGAAAAAA
Found at i:26678588 original size:38 final size:39
Alignment explanation
Indices: 26678529--26678620 Score: 109
Period size: 38 Copynumber: 2.4 Consensus size: 39
26678519 AACAGGCCAG
* * *
26678529 GAAAAAAAG-AGAGACAGAAAAAAGAAAAAAAGAAAGAA
1 GAAAAAAAGAAAAGAGAGAAAAAAGAAAAAAAGAAAAAA
* *
26678567 GAAAAAAAGAAAAGAGA-AAAAAGGAAAAAAGGAAAAAA
1 GAAAAAAAGAAAAGAGAGAAAAAAGAAAAAAAGAAAAAA
26678605 GAAGAAAAA-AAAAGAG
1 GAA-AAAAAGAAAAGAG
26678621 TTTCAATTCG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 37 0.79
39 10 0.21
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (39 bp):
GAAAAAAAGAAAAGAGAGAAAAAAGAAAAAAAGAAAAAA
Found at i:26679199 original size:20 final size:22
Alignment explanation
Indices: 26679158--26679200 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26679148 AATTTTGTGT
*
26679158 AAAAAAATCCAGTGTTTTCAAA
1 AAAAAAATCCAGTGTTTCCAAA
26679180 AAAAAAATCCA-T-TTTCCAAA
1 AAAAAAATCCAGTGTTTCCAAA
26679200 A
1 A
26679201 TTTCTAGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 1 0.05
22 11 0.55
ACGTcount: A:0.53, C:0.16, G:0.05, T:0.26
Consensus pattern (22 bp):
AAAAAAATCCAGTGTTTCCAAA
Found at i:26679270 original size:18 final size:17
Alignment explanation
Indices: 26679192--26679358 Score: 158
Period size: 17 Copynumber: 9.5 Consensus size: 17
26679182 AAAAATCCAT
* *
26679192 TTTCCAAAATTTCTAGTG
1 TTTCAAAAATTT-TCGTG
*
26679210 TCTTCTAAAAATTTTTGTG
1 T-TTC-AAAAATTTTCGTG
26679229 TTTCAAAAATTTTCGT-
1 TTTCAAAAATTTTCGTG
*
26679245 TTTCAAAAATTTCCGTG
1 TTTCAAAAATTTTCGTG
26679262 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* *
26679279 TTTTCAAAATTTTTCGTA
1 -TTTCAAAAATTTTCGTG
** *
26679297 TTTCAAAAATCCTCTTG
1 TTTCAAAAATTTTCGTG
26679314 TTTTCAAAAA-TTTCGGTG
1 -TTTCAAAAATTTTC-GTG
**
26679332 TTTTGAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
26679349 TTTTCAAAAA
1 -TTTCAAAAA
26679359 AAAATCTCGT
Statistics
Matches: 122, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
16 15 0.12
17 51 0.42
18 41 0.34
19 8 0.07
20 7 0.06
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.47
Consensus pattern (17 bp):
TTTCAAAAATTTTCGTG
Found at i:26679358 original size:35 final size:34
Alignment explanation
Indices: 26679192--26679358 Score: 167
Period size: 35 Copynumber: 4.8 Consensus size: 34
26679182 AAAAATCCAT
* * * *
26679192 TTTCCAAAATTTCTAGTGTCTTCTAAAAATTTTTGTG
1 TTTCAAAAATTT-TCGTGTTTTC-AAAAA-TTTCGTG
26679229 TTTCAAAAATTTTC--GTTTTCAAAAATTTCCGTG
1 TTTCAAAAATTTTCGTGTTTTCAAAAATTT-CGTG
* *
26679262 TTTCAAAAATTTTCGTGTTTTCAAAATTTTTCGTA
1 TTTCAAAAATTTTCGTGTTTTCAAAA-ATTTCGTG
** *
26679297 TTTCAAAAATCCTCTTGTTTTCAAAAATTTCGGTG
1 TTTCAAAAATTTTCGTGTTTTCAAAAATTTC-GTG
**
26679332 TTTTGAAAATTTTCGTGTTTTCAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAA
26679359 AAAATCTCGT
Statistics
Matches: 109, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
32 3 0.03
33 22 0.20
34 9 0.08
35 60 0.55
36 4 0.04
37 11 0.10
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.47
Consensus pattern (34 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAATTTCGTG
Found at i:26687962 original size:81 final size:81
Alignment explanation
Indices: 26687822--26688496 Score: 1001
Period size: 81 Copynumber: 8.3 Consensus size: 81
26687812 CAAGAAATAT
* **
26687822 TTTTCAATTTCTGTTTTAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCG
1 TTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCG
26687887 CACGCTGAGGTATTTC
66 CACGCTGAGGTATTTC
*
26687903 TTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAG-AGATGAGTTGAGCCTCGGGT-
1 TTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGTC
26687966 -CACGCTGAGGTATTTC
65 GCACGCTGAGGTATTTC
* *
26687982 TTTTAAATCTCTGTTTTTCGAAACAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTC
1 TTTTAAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTC
*
26688047 GCACGCTGAGGTATTTT
65 GCACGCTGAGGTATTTC
* *
26688064 TTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCT
1 TTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCG
26688129 CACGCTGAGGTATTTC
66 CACGCTGAGGTATTTC
26688145 TTTTAAATTTCTGTCTTTTCAAAAAAAATCAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC
1 TTTTAAATTTCTGT-TTTTC---AAAAA--AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC
26688210 GGGTCGCACGCTGAGGTATTTC
60 GGGTCGCACGCTGAGGTATTTC
*
26688232 TTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAG-AGATGAGTTGAGCCTCGGGT-
1 TTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGTC
26688295 -CACGCTGAGGTATTTC
65 GCACGCTGAGGTATTTC
* *
26688311 TTTTAAATCTCTGTTTTTCGAAAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGGTC
1 TTTTAAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTC
26688376 GCACGCTGAGGTATTTC
65 GCACGCTGAGGTATTTC
** * * *
26688393 TTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGTTAGAGGTGAGTTGAGCCTCGGGCCA
1 TTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCG
* *
26688458 CACACCGAGGTA----
66 CACGCTGAGGTATTTC
*
26688470 TTTTCAATTTCTGTTTTTCAAATAAAA
1 TTTTAAATTTCTGTTTTTCAAA-AAAA
26688497 AGAAAATTTT
Statistics
Matches: 548, Mismatches: 29, Indels: 37
0.89 0.05 0.06
Matches are distributed among these distances:
77 21 0.04
78 4 0.01
79 68 0.12
80 82 0.15
81 217 0.40
82 72 0.13
83 5 0.01
85 5 0.01
86 5 0.01
87 69 0.13
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35
Consensus pattern (81 bp):
TTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCG
CACGCTGAGGTATTTC
Found at i:26688116 original size:161 final size:161
Alignment explanation
Indices: 26687841--26688454 Score: 1050
Period size: 161 Copynumber: 3.8 Consensus size: 161
26687831 TCTGTTTTAA
26687841 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTCTTT
1 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTCTTT
26687906 TAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTCACGC
66 TAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTCACGC
26687971 TGAGGTATTTCTTTTAAATCTCTGTTTTTCG
131 TGAGGTATTTCTTTTAAATCTCTGTTTTTCG
* *
26688002 AAACAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTTTTT
1 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTCTTT
* *
26688067 TAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGA-AGTGAGTTGAGCCTCAGGTCTCA
66 TAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGA-TGAGTTGAGCCTC-GG-GTCA
* *
26688131 CGCTGAGGTATTTCTTTTAAATTTCTGTCTTTTCAAA
128 CGCTGAGGTATTTCTTTTAAATCTCTGT-TTTTC--G
26688168 AAAAATCAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTCT
1 AAAAA--AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTCT
26688233 TTTAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTCAC
64 TTTAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTCAC
26688298 GCTGAGGTATTTCTTTTAAATCTCTGTTTTTCG
129 GCTGAGGTATTTCTTTTAAATCTCTGTTTTTCG
*
26688331 AAAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTCTTT
1 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTCTTT
* ** *
26688396 TAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGTTAGAGGTGAGTTGAGCCTCGGG
66 TAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGG
26688455 CCACACACCG
Statistics
Matches: 427, Mismatches: 17, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
160 1 0.00
161 230 0.54
162 2 0.00
163 35 0.08
164 5 0.01
165 5 0.01
166 34 0.08
167 2 0.00
168 112 0.26
169 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (161 bp):
AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTCTTT
TAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTCACGC
TGAGGTATTTCTTTTAAATCTCTGTTTTTCG
Found at i:26688444 original size:329 final size:327
Alignment explanation
Indices: 26687839--26688451 Score: 1154
Period size: 329 Copynumber: 1.9 Consensus size: 327
26687829 TTTCTGTTTT
26687839 AAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTCT
1 AAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTCT
26687904 TTTAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTCAC
66 TTTAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTCAC
* *
26687969 GCTGAGGTATTTCTTTTAAATCTCTGTTTTTCGAAACAAATCAACTCATATTGCGAGAAGTGAGT
131 GCTGAGGTATTTCTTTTAAATCTCTGTTTTTCGAAAAAAATCAACTCATATTACGAGAAGTGAGT
*
26688034 TGAGCCTCGGGTCGCACGCTGAGGTATTTTTTTTAAATTTCTGTTTTTCAAAAAAATCAACTCAT
196 TGAGCCTCGGGTCGCACGCTGAGGTATTTCTTTTAAATTTCTGTTTTTCAAAAAAATCAACTCAT
26688099 ATTGCGAGAAGTGAGTTGAGCCTCAGGTCTCACGCTGAGGTATTTCTTTTAAATTTCTGTCTTTT
261 ATTGCGAGAAGTGAGTTGAGCCTCAGGTCTCACGCTGAGGTATTTCTTTTAAATTTCTGTCTTTT
26688164 CA
326 CA
26688166 AAAAAAATCAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTT
1 AAAAAAA--AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTT
26688231 CTTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTC
64 CTTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTC
26688296 ACGCTGAGGTATTTCTTTTAAATCTCTGTTTTTCGAAAAAAATCAACTCATATTACGAGAAGTGA
129 ACGCTGAGGTATTTCTTTTAAATCTCTGTTTTTCGAAAAAAATCAACTCATATTACGAGAAGTGA
26688361 GTTGAGCCTCGGGTCGCACGCTGAGGTATTTCTTTTAAATTTCTGTTTTTCAAAAAAATCAACTC
194 GTTGAGCCTCGGGTCGCACGCTGAGGTATTTCTTTTAAATTTCTGTTTTTCAAAAAAATCAACTC
** *
26688426 ATATTGTTAGAGGTGAGTTGAGCCTC
259 ATATTGCGAGAAGTGAGTTGAGCCTC
26688452 GGGCCACACA
Statistics
Matches: 278, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
327 7 0.03
329 271 0.97
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (327 bp):
AAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTCT
TTTAAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTCAC
GCTGAGGTATTTCTTTTAAATCTCTGTTTTTCGAAAAAAATCAACTCATATTACGAGAAGTGAGT
TGAGCCTCGGGTCGCACGCTGAGGTATTTCTTTTAAATTTCTGTTTTTCAAAAAAATCAACTCAT
ATTGCGAGAAGTGAGTTGAGCCTCAGGTCTCACGCTGAGGTATTTCTTTTAAATTTCTGTCTTTT
CA
Found at i:26688721 original size:29 final size:29
Alignment explanation
Indices: 26688670--26688769 Score: 155
Period size: 29 Copynumber: 3.4 Consensus size: 29
26688660 AAAAAAATCA
*
26688670 AAATATACATTTTGACCCCTAAACTTTTTG
1 AAAT-TACATTTTGACCCATAAACTTTTTG
* *
26688700 AAATTATATTTTGACCCATAAACCTTTTG
1 AAATTACATTTTGACCCATAAACTTTTTG
*
26688729 AAATTACATTTTGACCCATAACCTTTTTG
1 AAATTACATTTTGACCCATAAACTTTTTG
26688758 AAATTACATTTT
1 AAATTACATTTT
26688770 ATCCCTAAAT
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
29 60 0.94
30 4 0.06
ACGTcount: A:0.34, C:0.18, G:0.06, T:0.42
Consensus pattern (29 bp):
AAATTACATTTTGACCCATAAACTTTTTG
Found at i:26689060 original size:10 final size:10
Alignment explanation
Indices: 26689041--26689090 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
26689031 TTTTTCGAAG
*
26689041 GAAAAAAGAA
1 GAAAAGAGAA
26689051 GAAAAGAGAA
1 GAAAAGAGAA
*
26689061 TAAAAGAGAA
1 GAAAAGAGAA
* *
26689071 -AGAGGAGAA
1 GAAAAGAGAA
26689080 GAAAAGA-AA
1 GAAAAGAGAA
26689089 GA
1 GA
26689091 GTACCGGCGT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
9 11 0.33
10 22 0.67
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (10 bp):
GAAAAGAGAA
Found at i:26689078 original size:19 final size:17
Alignment explanation
Indices: 26689044--26689086 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
26689034 TTCGAAGGAA
*
26689044 AAAAGAAGAAAAGAGAAT
1 AAAAG-AGAAAAGAGAAG
26689062 AAAAGAGAAAGAGGAGAAG
1 AAAAGAGAAA-A-GAGAAG
26689081 AAAAGA
1 AAAAGA
26689087 AAGAGTACCG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 5 0.23
18 6 0.27
19 11 0.50
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (17 bp):
AAAAGAGAAAAGAGAAG
Found at i:26689162 original size:3 final size:3
Alignment explanation
Indices: 26689156--26689223 Score: 118
Period size: 3 Copynumber: 22.3 Consensus size: 3
26689146 GTGTAGGAGG
26689156 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
*
26689204 AGAA AGA AGA AGA AAA AGA A
1 AG-A AGA AGA AGA AGA AGA A
26689224 AAAAAAGAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
3 59 0.95
4 3 0.05
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:26689355 original size:18 final size:18
Alignment explanation
Indices: 26689334--26689394 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
26689324 AAAATTAATT
26689334 AAAAAAAA-CAACACAAA
1 AAAAAAAATCAACACAAA
* *
26689351 AAAAATAAATCAGCCCAAA
1 AAAAA-AAATCAACACAAA
*
26689370 AGAAAAAATCAA-AGCAAA
1 AAAAAAAATCAACA-CAAA
26689388 AAAAAAA
1 AAAAAAA
26689395 CAGCCCAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
17 5 0.14
18 19 0.54
19 11 0.31
ACGTcount: A:0.75, C:0.15, G:0.05, T:0.05
Consensus pattern (18 bp):
AAAAAAAATCAACACAAA
Found at i:26689410 original size:18 final size:17
Alignment explanation
Indices: 26689334--26689411 Score: 61
Period size: 18 Copynumber: 4.5 Consensus size: 17
26689324 AAAATTAATT
*
26689334 AAAAAAAA-CAACACAAA
1 AAAAAAAATCAAC-CCAA
*
26689351 AAAAATAAATCAGCCCAA
1 AAAAA-AAATCAACCCAA
**
26689369 AAGAAAAAATCAAAGCAA
1 AA-AAAAAATCAACCCAA
*
26689387 AAAAAAAA-CAGCCCAA
1 AAAAAAAATCAACCCAA
*
26689403 AAAGAAAAT
1 AAAAAAAAT
26689412 GCCCAAAAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
16 12 0.25
17 11 0.23
18 19 0.40
19 6 0.12
ACGTcount: A:0.72, C:0.17, G:0.06, T:0.05
Consensus pattern (17 bp):
AAAAAAAATCAACCCAA
Found at i:26689559 original size:15 final size:14
Alignment explanation
Indices: 26689539--26689630 Score: 105
Period size: 15 Copynumber: 6.4 Consensus size: 14
26689529 CAGGCCAGGA
*
26689539 AAAAAAGAGAGAAAG
1 AAAAAAGA-AAAAAG
26689554 AAAAAAGAAAAAAAG
1 AAAAAAG-AAAAAAG
*
26689569 AAAGAAGAAAAAAG
1 AAAAAAGAAAAAAG
*
26689583 AAAAGAGAAAAAAGG
1 AAAAAAGAAAAAA-G
*
26689598 AAAAAAGGAAAAAG
1 AAAAAAGAAAAAAG
*
26689612 AAGAAA-AAAAAAG
1 AAAAAAGAAAAAAG
26689625 AAAAAA
1 AAAAAA
26689631 AGAGTTTCAA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
13 11 0.17
14 24 0.36
15 30 0.45
16 1 0.02
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAAAAG
Found at i:26689562 original size:7 final size:7
Alignment explanation
Indices: 26689539--26689630 Score: 105
Period size: 7 Copynumber: 12.9 Consensus size: 7
26689529 CAGGCCAGGA
26689539 AAAAAAG
1 AAAAAAG
*
26689546 AGAGAAAG
1 A-AAAAAG
26689554 AAAAAAG
1 AAAAAAG
26689561 AAAAAAAG
1 -AAAAAAG
*
26689569 AAAGAAG
1 AAAAAAG
26689576 AAAAAAG
1 AAAAAAG
*
26689583 AAAAGAG
1 AAAAAAG
26689590 AAAAAAGG
1 AAAAAA-G
26689598 AAAAAAG
1 AAAAAAG
*
26689605 GAAAAAG
1 AAAAAAG
*
26689612 AAGAAA-
1 AAAAAAG
26689618 AAAAAAG
1 AAAAAAG
26689625 AAAAAA
1 AAAAAA
26689631 AGAGTTTCAA
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
6 5 0.07
7 46 0.65
8 20 0.28
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:26689565 original size:8 final size:8
Alignment explanation
Indices: 26689537--26689633 Score: 85
Period size: 8 Copynumber: 12.2 Consensus size: 8
26689527 AGCAGGCCAG
26689537 GAAAAAAA
1 GAAAAAAA
* *
26689545 GAGAGAAA
1 GAAAAAAA
26689553 G-AAAAAA
1 GAAAAAAA
26689560 GAAAAAAA
1 GAAAAAAA
*
26689568 G-AAAGAA
1 GAAAAAAA
26689575 G-AAAAAA
1 GAAAAAAA
*
26689582 G-AAAAGA
1 GAAAAAAA
*
26689589 GAAAAAAG
1 GAAAAAAA
*
26689597 GAAAAAAG
1 GAAAAAAA
26689605 GAAAAAGAA
1 GAAAAA-AA
26689614 GAAAAAAAAA
1 G--AAAAAAA
26689624 GAAAAAAA
1 GAAAAAAA
26689632 GA
1 GA
26689634 GTTTCAATTC
Statistics
Matches: 74, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
7 23 0.31
8 41 0.55
9 2 0.03
10 3 0.04
11 5 0.07
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (8 bp):
GAAAAAAA
Found at i:26689591 original size:29 final size:29
Alignment explanation
Indices: 26689539--26689630 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 29
26689529 CAGGCCAGGA
* *
26689539 AAAAAAGAGAGAAAGAAAAAAGAAAAAAAG
1 AAAAAAGA-AAAAAGAAAAGAGAAAAAAAG
* *
26689569 AAAGAAGAAAAAAGAAAAGAGAAAAAAGG
1 AAAAAAGAAAAAAGAAAAGAGAAAAAAAG
* *
26689598 AAAAAAGGAAAAAG--AAGAAAAAAAAAG
1 AAAAAAGAAAAAAGAAAAGAGAAAAAAAG
26689625 AAAAAA
1 AAAAAA
26689631 AGAGTTTCAA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 17 0.31
29 30 0.56
30 7 0.13
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (29 bp):
AAAAAAGAAAAAAGAAAAGAGAAAAAAAG
Found at i:26689616 original size:42 final size:42
Alignment explanation
Indices: 26689541--26689628 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 42
26689531 GGCCAGGAAA
* *
26689541 AAAAGAGAGAAAGAAAAAAGAAAAAAAGAAAGAAGAAAAAAG
1 AAAAGAGAAAAAGAAAAAAGAAAAAAAGAAAGAAAAAAAAAG
*
26689583 AAAAGAGAAAAAAGGAAAAAAG-GAAAAAG-AAGAAAAAAAAAG
1 AAAAGAG-AAAAA-GAAAAAAGAAAAAAAGAAAGAAAAAAAAAG
26689625 AAAA
1 AAAA
26689629 AAAGAGTTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
42 23 0.56
43 10 0.24
44 8 0.20
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (42 bp):
AAAAGAGAAAAAGAAAAAAGAAAAAAAGAAAGAAAAAAAAAG
Found at i:26690211 original size:19 final size:21
Alignment explanation
Indices: 26690171--26690212 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
26690161 AATTTTGTGT
*
26690171 AAAAAAATCCAGTGTTTTCAA
1 AAAAAAATCCAGTGTTTCCAA
26690192 AAAAAAATCCA-T-TTTCCAA
1 AAAAAAATCCAGTGTTTCCAA
26690211 AA
1 AA
26690213 TTTTTCGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 1 0.05
21 11 0.55
ACGTcount: A:0.52, C:0.17, G:0.05, T:0.26
Consensus pattern (21 bp):
AAAAAAATCCAGTGTTTCCAA
Found at i:26690262 original size:18 final size:18
Alignment explanation
Indices: 26690203--26690372 Score: 188
Period size: 18 Copynumber: 9.6 Consensus size: 18
26690193 AAAAAATCCA
*
26690203 TTTTCCAAAATTTTTCGTG
1 TTTT-CAAAAATTTTCGTG
* *
26690222 TCTTCTAAAAATTTTTGTG
1 TTTTC-AAAAATTTTCGTG
26690241 -TTTCAAAAATTTTCGTG
1 TTTTCAAAAATTTTCGTG
*
26690258 TTTTCAAAAATTTCCGTG
1 TTTTCAAAAATTTTCGTG
26690276 -TTTCAAAAATTTTCGTG
1 TTTTCAAAAATTTTCGTG
*
26690293 TTTTCAAAATTTTTCGT-
1 TTTTCAAAAATTTTCGTG
* ** *
26690310 ATTTCAAAAATCCTCTTG
1 TTTTCAAAAATTTTCGTG
26690328 TTTTCAAAAA-TTTCGATG
1 TTTTCAAAAATTTTCG-TG
*
26690346 TTTT-GAAAATTTTCGTG
1 TTTTCAAAAATTTTCGTG
26690363 TTTTCAAAAA
1 TTTTCAAAAA
26690373 AAAATCTCGT
Statistics
Matches: 125, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
17 52 0.42
18 59 0.47
19 14 0.11
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48
Consensus pattern (18 bp):
TTTTCAAAAATTTTCGTG
Found at i:26690277 original size:35 final size:35
Alignment explanation
Indices: 26690208--26690372 Score: 206
Period size: 35 Copynumber: 4.7 Consensus size: 35
26690198 ATCCATTTTC
* * *
26690208 CAAAATTTTTCGTGTCTTCTAAAAATTTTTGTGTTT
1 CAAAAATTTTCGTGTTTTC-AAAAATTTTCGTGTTT
*
26690244 CAAAAATTTTCGTGTTTTCAAAAATTTCCGTGTTT
1 CAAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTT
* *
26690279 CAAAAATTTTCGTGTTTTCAAAATTTTTCGTATTT
1 CAAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTT
** *
26690314 CAAAAATCCTCTTGTTTTCAAAAA-TTTCGATGTTT
1 CAAAAATTTTCGTGTTTTCAAAAATTTTCG-TGTTT
**
26690349 TGAAAATTTTCGTGTTTTCAAAAA
1 CAAAAATTTTCGTGTTTTCAAAAA
26690373 AAAATCTCGT
Statistics
Matches: 111, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
34 5 0.05
35 89 0.80
36 17 0.15
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (35 bp):
CAAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTT
Found at i:26690386 original size:38 final size:37
Alignment explanation
Indices: 26690333--26690459 Score: 111
Period size: 35 Copynumber: 3.4 Consensus size: 37
26690323 TCTTGTTTTC
*
26690333 AAAAATTTCGATGTTTTGAAAATTTTCGTGTTTTCAAAA
1 AAAAATCTCG-TGTTTT-AAAATTTTCGTGTTTTCAAAA
*
26690372 AAAAATCTCGTGTTTCATAAATTTT-G-GTTTT-AAAA
1 AAAAATCTCGTGTTTTA-AAATTTTCGTGTTTTCAAAA
* * * *
26690407 AAATAT-T-ATGTCTTAAAATTCTCGTGTTTTCAAAA
1 AAAAATCTCGTGTTTTAAAATTTTCGTGTTTTCAAAA
26690442 CAAGAAATTCTCGTGTTT
1 -AA-AAA-TCTCGTGTTT
26690460 CAATCGGATC
Statistics
Matches: 69, Mismatches: 10, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
32 6 0.09
33 6 0.09
34 6 0.09
35 13 0.19
36 7 0.10
37 4 0.06
38 13 0.19
39 10 0.14
40 4 0.06
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (37 bp):
AAAAATCTCGTGTTTTAAAATTTTCGTGTTTTCAAAA
Found at i:26690407 original size:70 final size:70
Alignment explanation
Indices: 26690238--26690462 Score: 194
Period size: 70 Copynumber: 3.1 Consensus size: 70
26690228 AAAAATTTTT
* *
26690238 GTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTCCG-TGTTTCAAAAATTTTCGTGTTTTC---A
1 GTGTTTCAAAAATTTT-G-GTTTTAAAAAATTT-CGATGTTT-TAAAATTTTCGTGTTTTCAAAA
** *
26690299 AAATTTTTC
62 AAAAATCTC
* *
26690308 GTATTTCAAAAATCCTCTT-GTTTTCAAAAATTTCGATGTTTTGAAAATTTTCGTGTTTTCAAAA
1 GTGTTTCAAAAAT--T-TTGGTTTTAAAAAATTTCGATGTTTT-AAAATTTTCGTGTTTTCAAAA
26690372 AAAAATCTC
62 AAAAATCTC
* * *
26690381 GTGTTTCATAAATTTTGGTTTTAAAAAAATATT--ATGTCTTAAAATTCTCGTGTTTTCAAAACA
1 GTGTTTCAAAAATTTTGGTTTT-AAAAAAT-TTCGATGTTTTAAAATTTTCGTGTTTTCAAAA-A
26690444 AGAAATTCTC
63 A-AAA-TCTC
26690454 GTGTTTCAA
1 GTGTTTCAA
26690463 TCGGATCACG
Statistics
Matches: 130, Mismatches: 11, Indels: 25
0.78 0.07 0.15
Matches are distributed among these distances:
69 2 0.02
70 70 0.54
71 14 0.11
72 10 0.08
73 34 0.26
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.44
Consensus pattern (70 bp):
GTGTTTCAAAAATTTTGGTTTTAAAAAATTTCGATGTTTTAAAATTTTCGTGTTTTCAAAAAAAA
ATCTC
Found at i:26704359 original size:23 final size:25
Alignment explanation
Indices: 26704325--26704377 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
26704315 TTTATTTATT
26704325 TATTTCTTTTAT-T-CACATACATA
1 TATTTCTTTTATATGCACATACATA
* *
26704348 TATTT-TTCTTATATGTACATATATA
1 TATTTCTT-TTATATGCACATACATA
26704373 TATTT
1 TATTT
26704378 ATATTTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 2 0.08
23 9 0.36
24 1 0.04
25 13 0.52
ACGTcount: A:0.30, C:0.11, G:0.02, T:0.57
Consensus pattern (25 bp):
TATTTCTTTTATATGCACATACATA
Found at i:26704643 original size:14 final size:14
Alignment explanation
Indices: 26704621--26704653 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
26704611 ACATTTATTC
*
26704621 ATATATCAAATTTA
1 ATATTTCAAATTTA
26704635 ATATTTCAAATTTA
1 ATATTTCAAATTTA
26704649 ATATT
1 ATATT
26704654 ACATCAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (14 bp):
ATATTTCAAATTTA
Found at i:26705108 original size:175 final size:175
Alignment explanation
Indices: 26704817--26705164 Score: 696
Period size: 175 Copynumber: 2.0 Consensus size: 175
26704807 AACATAAAAG
26704817 TTCCTTATCGGGAGTTCGATACGTTGTGTCCTAACGCATTGGATATAACATGTTGTTTTCTCGAG
1 TTCCTTATCGGGAGTTCGATACGTTGTGTCCTAACGCATTGGATATAACATGTTGTTTTCTCGAG
26704882 TTGAGGATTTTTCTAAAAAATAATAAAGGCAATATTCAATGTTTGAAATTTTGAGAAATCGTGCC
66 TTGAGGATTTTTCTAAAAAATAATAAAGGCAATATTCAATGTTTGAAATTTTGAGAAATCGTGCC
26704947 CTAACGTATTGGACTACAATTTCTTCATCTGACTTAAACAATTTC
131 CTAACGTATTGGACTACAATTTCTTCATCTGACTTAAACAATTTC
26704992 TTCCTTATCGGGAGTTCGATACGTTGTGTCCTAACGCATTGGATATAACATGTTGTTTTCTCGAG
1 TTCCTTATCGGGAGTTCGATACGTTGTGTCCTAACGCATTGGATATAACATGTTGTTTTCTCGAG
26705057 TTGAGGATTTTTCTAAAAAATAATAAAGGCAATATTCAATGTTTGAAATTTTGAGAAATCGTGCC
66 TTGAGGATTTTTCTAAAAAATAATAAAGGCAATATTCAATGTTTGAAATTTTGAGAAATCGTGCC
26705122 CTAACGTATTGGACTACAATTTCTTCATCTGACTTAAACAATT
131 CTAACGTATTGGACTACAATTTCTTCATCTGACTTAAACAATT
26705165 GAATATCCTT
Statistics
Matches: 173, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
175 173 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (175 bp):
TTCCTTATCGGGAGTTCGATACGTTGTGTCCTAACGCATTGGATATAACATGTTGTTTTCTCGAG
TTGAGGATTTTTCTAAAAAATAATAAAGGCAATATTCAATGTTTGAAATTTTGAGAAATCGTGCC
CTAACGTATTGGACTACAATTTCTTCATCTGACTTAAACAATTTC
Found at i:26706283 original size:114 final size:113
Alignment explanation
Indices: 26706084--26706517 Score: 685
Period size: 114 Copynumber: 3.8 Consensus size: 113
26706074 ATTTTTTTTG
***** *
26706084 GGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAA-AAAAATTTGATTTTTTTCTTTTTTTTT
1 GGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAATTTTTTTTTGAATTTTTTCTTTTTTTTT
* *
26706148 CGTGTCAAAATCAAATATAAATATACGAAAAAAGT-AAAAAAAAATTT
66 CGTGTCAGAATCAGATATAAATATACGAAAAAAGTAAAAAAAAAATTT
26706195 AGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAATTTTTTTTTTGAATTTTTTCTTTTTTT
1 -GGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAA-TTTTTTTTTGAATTTTTTCTTTTTTT
*
26706260 TTCGTGTCAGAATCAGATATAAATATACGAAAAAAGTAAAAAAAAAAATT
64 TTCGTGTCAGAATCAGATATAAATATACGAAAAAAGTAAAAAAAAAATTT
26706310 GGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAATTTTTTTTTGAATTTTTTC-TTTTTTTT
1 GGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAATTTTTTTTTGAATTTTTTCTTTTTTTTT
*
26706374 CGTGTCAGAATTAGATATAAATATACGAAAAAAGTAAAAAAAAAATTTT
66 CGTGTCAGAATCAGATATAAATATACGAAAAAAGTAAAAAAAAAA-TTT
** *
26706423 GGGTGCTGGCCTGTCAATGGCTTGCACCCAACAGTAAAAATTTTTTTTGAATTTTTTCTTTTTTT
1 -GGTGCTGGCCTGTCAATGGCCGGCACCCAACAGT-AAATTTTTTTTTGAATTTTTTCTTTTTTT
26706488 TTCGTGTCAGAATCAGATATAAATATACGA
64 TTCGTGTCAGAATCAGATATAAATATACGA
26706518 CGATTTTTCG
Statistics
Matches: 300, Mismatches: 15, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
112 89 0.30
113 21 0.07
114 123 0.41
115 32 0.11
116 35 0.12
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (113 bp):
GGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAATTTTTTTTTGAATTTTTTCTTTTTTTTT
CGTGTCAGAATCAGATATAAATATACGAAAAAAGTAAAAAAAAAATTT
Found at i:26706649 original size:16 final size:15
Alignment explanation
Indices: 26706624--26706655 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
26706614 GCACCCAAAA
26706624 TTTTTTTTTCCTTTT
1 TTTTTTTTTCCTTTT
26706639 TTTTCTTTTTCCTTTT
1 TTTT-TTTTTCCTTTT
26706655 T
1 T
26706656 CGTGTATCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTTTCCTTTT
Found at i:26707116 original size:82 final size:84
Alignment explanation
Indices: 26707029--26707203 Score: 204
Period size: 84 Copynumber: 2.1 Consensus size: 84
26707019 TTTTAAGCCG
*
26707029 AAATTAAATTA-TA-TATTTTTATA-A-TATTAAAAATATAAATTTATTATTTTAATAATTT-AT
1 AAATTAAATTATTATTATTTTTA-AGAGGATT-AAAATATAAATTTATTA--TTAATAATTTAAT
*
26707089 ATCTTTAT-AATTTTAAAA-GATT
62 AT-TTTATAAATTATAAAAGGATT
* *
26707111 AAATTAAATTATTATTATTTTTAAGAGGATTAAAATATAATTTTATTATTACTAATTTAATATTT
1 AAATTAAATTATTATTATTTTTAAGAGGATTAAAATATAAATTTATTATTAATAATTTAATATTT
*
26707176 TATAAATTATAAAAGGTTT
66 TATAAATTATAAAAGGATT
26707195 AAA-TAAATT
1 AAATTAAATT
26707204 TTTTTCTATT
Statistics
Matches: 81, Mismatches: 5, Indels: 13
0.82 0.05 0.13
Matches are distributed among these distances:
82 25 0.31
83 22 0.27
84 31 0.38
85 3 0.04
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (84 bp):
AAATTAAATTATTATTATTTTTAAGAGGATTAAAATATAAATTTATTATTAATAATTTAATATTT
TATAAATTATAAAAGGATT
Found at i:26707157 original size:31 final size:30
Alignment explanation
Indices: 26707099--26707160 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 30
26707089 ATCTTTATAA
*
26707099 TTTTAAAAGATTAAATTAAATTATTATTAT
1 TTTTAAAAGATTAAAATAAATTATTATTAT
*
26707129 TTTTAAGAGGATTAAAATATAATT-TTATTAT
1 TTTTAA-AAGATTAAAATA-AATTATTATTAT
26707160 T
1 T
26707161 ACTAATTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 6 0.21
31 18 0.64
32 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (30 bp):
TTTTAAAAGATTAAAATAAATTATTATTAT
Found at i:26708250 original size:5 final size:5
Alignment explanation
Indices: 26708220--26708249 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
26708210 GAGGTGTTCA
*
26708220 TGGGC TGGGC TGGGC TGGGC TGGGC CGGGC
1 TGGGC TGGGC TGGGC TGGGC TGGGC TGGGC
26708250 CCATAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.23, G:0.60, T:0.17
Consensus pattern (5 bp):
TGGGC
Found at i:26709084 original size:21 final size:20
Alignment explanation
Indices: 26709060--26709101 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
26709050 TTTTATGTAT
* *
26709060 TTTTTAGAATTTATTTGAAAA
1 TTTTTACAATTT-TTTAAAAA
26709081 TTTTTACAATTTTTTAAAAA
1 TTTTTACAATTTTTTAAAAA
26709101 T
1 T
26709102 ATAAATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (20 bp):
TTTTTACAATTTTTTAAAAA
Found at i:26711420 original size:41 final size:41
Alignment explanation
Indices: 26711363--26711487 Score: 189
Period size: 41 Copynumber: 3.0 Consensus size: 41
26711353 GTTGAATTTT
*
26711363 ATGTTCTGGGCTTTAGCGACGTTTTTATGTAAGCGCCGCTA
1 ATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTA
* *
26711404 ATGTTCTGGGATTTAGCGGCGTTTTTAAGTAAGCGCCGCTA
1 ATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTA
* *
26711445 ATGTTCTGGGCTTTAGCGGCATTTTTAT-TGATGCGCCGCTA
1 ATGTTCTGGGCTTTAGCGGCGTTTTTATGT-AAGCGCCGCTA
26711486 AT
1 AT
26711488 TCTTAGGCCT
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
40 1 0.01
41 75 0.99
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.37
Consensus pattern (41 bp):
ATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTA
Found at i:26711501 original size:82 final size:82
Alignment explanation
Indices: 26711363--26711530 Score: 191
Period size: 82 Copynumber: 2.0 Consensus size: 82
26711353 GTTGAATTTT
* *
26711363 ATGTTCTGGGCTTTAGCGACGTTTTTATGTAAGCGCCGCTAATGTTCTGGGATTTAGCG-GCGTT
1 ATGTTCTGGGCTTTAGCGACATTTTTATGTAAGCGCCGCTAATGTTCTGGCATTTAGCGAGCGTT
* *
26711427 TTTAAGTAAGCGCCGCTA
66 TTTAA-AAAACGCCGCTA
* * *
26711445 ATGTTCTGGGCTTTAGCGGCATTTTTAT-TGATGCGCCGCTAA--TTCTTAGGCCTTTAGCGACG
1 ATGTTCTGGGCTTTAGCGACATTTTTATGT-AAGCGCCGCTAATGTTC-T-GGCATTTAGCGA-G
*
26711507 CTTTTTTAAAAAACGCCGCTA
62 CGTTTTTAAAAAACGCCGCTA
26711528 ATG
1 ATG
26711531 CTCTTCATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
80 3 0.04
81 2 0.03
82 46 0.63
83 13 0.18
84 9 0.12
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.36
Consensus pattern (82 bp):
ATGTTCTGGGCTTTAGCGACATTTTTATGTAAGCGCCGCTAATGTTCTGGCATTTAGCGAGCGTT
TTTAAAAAACGCCGCTA
Found at i:26711940 original size:16 final size:16
Alignment explanation
Indices: 26711919--26711988 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
26711909 CTATAGTATG
26711919 TAGTTTAAGGGTTTTA
1 TAGTTTAAGGGTTTTA
*
26711935 TAGTTTAA-GGTTTAA
1 TAGTTTAAGGGTTTTA
** * *
26711950 T-GTTTACTATAG-TATG
1 TAGTTTA--AGGGTTTTA
26711966 TAGTTTAAGGGTTTTA
1 TAGTTTAAGGGTTTTA
26711982 TAGTTTA
1 TAGTTTA
26711989 TGGTTTAGGG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
14 5 0.12
15 9 0.22
16 20 0.50
17 6 0.15
ACGTcount: A:0.27, C:0.01, G:0.21, T:0.50
Consensus pattern (16 bp):
TAGTTTAAGGGTTTTA
Found at i:26711947 original size:23 final size:23
Alignment explanation
Indices: 26711921--26712001 Score: 80
Period size: 23 Copynumber: 3.5 Consensus size: 23
26711911 ATAGTATGTA
26711921 GTTTAAGGGTTTTATAGTTTAAG
1 GTTTAAGGGTTTTATAGTTTAAG
*
26711944 GTTTAA-TGTTTACTATAGTATGT-A-
1 GTTTAAGGGTTT--TATAGT-T-TAAG
*
26711968 GTTTAAGGGTTTTATAGTTTATG
1 GTTTAAGGGTTTTATAGTTTAAG
26711991 GTTT-AGGGTTT
1 GTTTAAGGGTTT
26712002 GTTATATTGG
Statistics
Matches: 48, Mismatches: 3, Indels: 15
0.73 0.05 0.23
Matches are distributed among these distances:
21 1 0.02
22 12 0.25
23 16 0.33
24 12 0.25
25 6 0.12
26 1 0.02
ACGTcount: A:0.23, C:0.01, G:0.25, T:0.51
Consensus pattern (23 bp):
GTTTAAGGGTTTTATAGTTTAAG
Found at i:26716156 original size:21 final size:21
Alignment explanation
Indices: 26716130--26716197 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
26716120 CAACTTCAAG
* *
26716130 CAGAGGCGGCAGCGAGGGAAA
1 CAGAGGCTGCAGCGAGAGAAA
* *
26716151 CAGAGGTTGCAGTGAGAGAAA
1 CAGAGGCTGCAGCGAGAGAAA
*
26716172 CAGAGGCTGCAGCGAGAGAAG
1 CAGAGGCTGCAGCGAGAGAAA
26716193 CAGAG
1 CAGAG
26716198 CAGAGCAGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.35, C:0.16, G:0.43, T:0.06
Consensus pattern (21 bp):
CAGAGGCTGCAGCGAGAGAAA
Found at i:26721741 original size:18 final size:19
Alignment explanation
Indices: 26721713--26721748 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26721703 TTTTGCAATT
*
26721713 ATTTTTGAAAAATGTATAA
1 ATTTTTGAAAAATATATAA
26721732 ATTTTT-AAAAATATATA
1 ATTTTTGAAAAATATATA
26721749 TATTAAATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (19 bp):
ATTTTTGAAAAATATATAA
Found at i:26728846 original size:29 final size:29
Alignment explanation
Indices: 26728802--26728857 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
26728792 AAAAAATTCA
* *
26728802 AAAAAATATAAAAATACATTAATATTTTT
1 AAAAAATACAAAAATAAATTAATATTTTT
* *
26728831 AAAAAATACAATAATAAATTTATATTT
1 AAAAAATACAAAAATAAATTAATATTT
26728858 ATATTAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.38
Consensus pattern (29 bp):
AAAAAATACAAAAATAAATTAATATTTTT
Found at i:26728852 original size:21 final size:21
Alignment explanation
Indices: 26728784--26728852 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
26728774 CAATTTAATC
* *
26728784 ATAATTTTAAAAAATTCAA-A
1 ATAAATTTAAAAAATACAATA
* *
26728804 A-AAATAT-AAAAATACATTA
1 ATAAATTTAAAAAATACAATA
**
26728823 ATATTTTTAAAAAATACAATA
1 ATAAATTTAAAAAATACAATA
26728844 ATAAATTTA
1 ATAAATTTA
26728853 TATTTATATT
Statistics
Matches: 36, Mismatches: 10, Indels: 5
0.71 0.20 0.10
Matches are distributed among these distances:
18 8 0.22
19 6 0.17
20 4 0.11
21 18 0.50
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (21 bp):
ATAAATTTAAAAAATACAATA
Found at i:26741344 original size:20 final size:19
Alignment explanation
Indices: 26741296--26741344 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 19
26741286 AAAATAAGCA
* *
26741296 TAAATTATTAAAATTATAT
1 TAAAATATTAAAACTATAT
*
26741315 TAAAAGTATTAAAAACTATGT
1 TAAAA-TATT-AAAACTATAT
26741336 TAAAATATT
1 TAAAATATT
26741345 TTTAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 4 0.16
20 8 0.32
21 13 0.52
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (19 bp):
TAAAATATTAAAACTATAT
Found at i:26746407 original size:17 final size:18
Alignment explanation
Indices: 26746376--26746410 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
26746366 GAAAAAACTA
*
26746376 ATAAAAAGTATAATTTAG
1 ATAAAAAGTAGAATTTAG
26746394 ATAAAAA-TAGAATTTAG
1 ATAAAAAGTAGAATTTAG
26746411 GAAAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (18 bp):
ATAAAAAGTAGAATTTAG
Found at i:26751310 original size:45 final size:41
Alignment explanation
Indices: 26751251--26751360 Score: 107
Period size: 45 Copynumber: 2.6 Consensus size: 41
26751241 TTTGGTTCGC
* *
26751251 TGTATTGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
26751293 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
26751336 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
26751361 TAATGGAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 21 0.38
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:26751533 original size:18 final size:17
Alignment explanation
Indices: 26751506--26751540 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26751496 TTGTTATTAA
*
26751506 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26751524 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26751541 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26751677 original size:156 final size:157
Alignment explanation
Indices: 26751393--26751708 Score: 580
Period size: 156 Copynumber: 2.0 Consensus size: 157
26751383 TAGAATACCC
*
26751393 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * *
26751458 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTGTTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
26751523 TATATAATTTAATAAAATTCTT-ATAA
131 TATATAATTTAATAAAATTCTTAATAA
*
26751549 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
26751614 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
26751679 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
26751706 TTA
1 TTA
26751709 ATATTCTTAT
Statistics
Matches: 154, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
156 147 0.95
157 7 0.05
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.47
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:26751679 original size:16 final size:16
Alignment explanation
Indices: 26751642--26751683 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
26751632 TTAATCATAT
*
26751642 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
26751658 TT-AAATATATTATAA
1 TTAAAATATATTATAA
26751673 TTAAAATATAT
1 TTAAAATATAT
26751684 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:26751690 original size:14 final size:15
Alignment explanation
Indices: 26751651--26751692 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
26751641 TTTAAACATA
*
26751651 ATTATTATTAAATAT
1 ATTATAATTAAATAT
26751666 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
26751680 A-TATAATTTAATA
1 ATTATAATTAAATA
26751693 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:26751742 original size:61 final size:60
Alignment explanation
Indices: 26751677--26751864 Score: 165
Period size: 61 Copynumber: 3.1 Consensus size: 60
26751667 TTATAATTAA
26751677 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATACGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA-GAATTTACTCAAATCAT
* * * * * * * *
26751738 AATATATGATACT-GTAAAA-T-AT-A-AATTAACATAATTATTATTA-AATATA-TTATAATTA
1 AATATATAAT-TTAATAAAATTCTTAATAATT-A-AT-ATTCTTA-TAGAATTTACTCA-AATCA
*
26751796 A
60 T
*
26751797 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAGTCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATA-GAATTTACTCAAATCAT
26751858 AATATAT
1 AATATAT
26751865 GATACTGTAA
Statistics
Matches: 94, Mismatches: 19, Indels: 28
0.67 0.13 0.20
Matches are distributed among these distances:
57 4 0.04
58 5 0.05
59 28 0.30
60 14 0.15
61 34 0.36
62 5 0.05
63 4 0.04
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.43
Consensus pattern (60 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATAGAATTTACTCAAATCAT
Found at i:26751779 original size:120 final size:121
Alignment explanation
Indices: 26751645--26751930 Score: 472
Period size: 120 Copynumber: 2.4 Consensus size: 121
26751635 ATCATATTTA
26751645 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
26751710 TATTCTTATACGAATTTACTCAAATCATAATATATGATACTGTAAAAT-ATAA-ATT-
66 TATTCTTATACGAATTTACTCAAATCATAATATATGATACTGT-AAATGA-AATATTG
26751765 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
26751830 TATTCTTATATGAATTTACTCAAGTCATAATATATGATACTGTAAATGAAATTTTG
66 TATTCTTATACGAATTTACTCAAATCATAATATATGATACTGTAAATGAAATATTG
* * *
26751886 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAA
26751931 AATAATTTAA
Statistics
Matches: 157, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
119 6 0.04
120 149 0.95
121 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATACGAATTTACTCAAATCATAATATATGATACTGTAAATGAAATATTG
Found at i:26751810 original size:14 final size:15
Alignment explanation
Indices: 26751761--26751812 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
26751751 GTAAAATATA
26751761 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
26751776 TATTAAATATATTAT
1 AATTAAATATATTAT
26751791 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
26751804 AATTTAATA
1 AATTAAATA
26751813 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:26752024 original size:24 final size:25
Alignment explanation
Indices: 26751978--26752025 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
26751968 TATGAATTTT
26751978 TATAATTTAAAATAATAATTATTACA
1 TATAATTTAAAAT-ATAATTATTACA
26752004 TATAATTTAATAAT-TAA-TATTA
1 TATAATTTAA-AATATAATTATTA
26752026 AATTTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 3 0.14
26 10 0.48
27 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TATAATTTAAAATATAATTATTACA
Found at i:26752053 original size:92 final size:91
Alignment explanation
Indices: 26751953--26752161 Score: 260
Period size: 92 Copynumber: 2.3 Consensus size: 91
26751943 TAATTATAAC
* * *
26751953 TAATAAATTATATTTTATGAATTTTTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTTTATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAAT-A
* *
26752017 TTAATAT-TAAATTTCATAAAATTCTTGA
64 GTAATATAT-AATTTCATAAAATTCTTAA
* * *
26752045 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTTTATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
*
26752110 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
* * *
26752136 TAATAAAATGTTTTTATATGAATTTA
1 TAATAAATTATATTT-TATGAATTTA
26752162 CTAAAATCAA
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
91 35 0.35
92 63 0.62
93 3 0.03
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
TAATAAATTATATTTTATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
AATATATAATTTCATAAAATTCTTAA
Found at i:26757000 original size:13 final size:13
Alignment explanation
Indices: 26756982--26757008 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26756972 TAAAAACAAC
26756982 TATATTGTTTAAA
1 TATATTGTTTAAA
26756995 TATATTGTTTAAA
1 TATATTGTTTAAA
26757008 T
1 T
26757009 TAAACCGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (13 bp):
TATATTGTTTAAA
Found at i:26763708 original size:20 final size:18
Alignment explanation
Indices: 26763671--26763716 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
26763661 TTTTTTAACA
*
26763671 ATATTTTTTATTTTTATT
1 ATATTTTTAATTTTTATT
26763689 ATATTTTTAAATTATTTATT
1 ATATTTTT-AATT-TTTATT
*
26763709 AAATTTTT
1 ATATTTTT
26763717 TAAAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 8 0.33
19 3 0.12
20 13 0.54
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
ATATTTTTAATTTTTATT
Found at i:26768684 original size:19 final size:20
Alignment explanation
Indices: 26768660--26768709 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
26768650 TAGCATAAAT
*
26768660 TATTATTTAATTGAT-ATTA
1 TATTATTTAATTAATAATTA
*
26768679 TATTATTAAATTAATGAATTA
1 TATTATTTAATTAAT-AATTA
26768700 TATATATTTA
1 TAT-TATTTA
26768710 TATATATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 13 0.52
21 7 0.28
22 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (20 bp):
TATTATTTAATTAATAATTA
Found at i:26768686 original size:22 final size:21
Alignment explanation
Indices: 26768658--26768707 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
26768648 AATAGCATAA
*
26768658 ATTATT-ATTTAATTGATATTAT
1 ATTATTAAATTAA-TGA-ATTAT
26768680 ATTATTAAATTAATGAATTAT
1 ATTATTAAATTAATGAATTAT
26768701 ATATATT
1 AT-TATT
26768708 TATATATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 7 0.28
22 13 0.52
23 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (21 bp):
ATTATTAAATTAATGAATTAT
Found at i:26768830 original size:30 final size:28
Alignment explanation
Indices: 26768791--26768852 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 28
26768781 ATGGATTTAA
* *
26768791 ATTACTTATTATTTAAGTACATATATATTT
1 ATTACTTATTA-TTAAGTA-AAAGATATTT
*
26768821 ATTATTTATTATTAAGTAAAAGATATTT
1 ATTACTTATTATTAAGTAAAAGATATTT
26768849 ATTA
1 ATTA
26768853 ATTAAATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 12 0.41
29 7 0.24
30 10 0.34
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (28 bp):
ATTACTTATTATTAAGTAAAAGATATTT
Found at i:26768994 original size:19 final size:20
Alignment explanation
Indices: 26768961--26768999 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
26768951 ACATGTGTAA
26768961 TAATAATAAATATATGTATT
1 TAATAATAAATATATGTATT
26768981 TAATAATAAA-ATATGTATT
1 TAATAATAAATATATGTATT
26769000 GCTTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
TAATAATAAATATATGTATT
Found at i:26769847 original size:36 final size:37
Alignment explanation
Indices: 26769760--26769858 Score: 101
Period size: 36 Copynumber: 2.6 Consensus size: 37
26769750 GAATATATGT
* *
26769760 GTGGAATTGAATTGAATATATTGGCTTGAAAAATGAAAAG
1 GTGGAATTGAATTGAAT-T-GT-GATTGAAAAATGAAAAG
** *
26769800 GTGAGTTTTGAATTGAATTGTGATTG-AAAGTGAAAAG
1 GTG-GAATTGAATTGAATTGTGATTGAAAAATGAAAAG
*
26769837 GTGGAATTGAATTGAAATGTGA
1 GTGGAATTGAATTGAATTGTGA
26769859 ATTTGGAGAC
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
36 16 0.32
37 13 0.26
38 4 0.08
39 1 0.02
40 4 0.08
41 12 0.24
ACGTcount: A:0.38, C:0.01, G:0.28, T:0.32
Consensus pattern (37 bp):
GTGGAATTGAATTGAATTGTGATTGAAAAATGAAAAG
Found at i:26770827 original size:18 final size:18
Alignment explanation
Indices: 26770804--26770839 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26770794 AAAAAGGTTT
*
26770804 AAAAAGTTAGATTTGTAA
1 AAAAAGTTAAATTTGTAA
26770822 AAAAAGTTAAATTTGTAA
1 AAAAAGTTAAATTTGTAA
26770840 TGTTATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33
Consensus pattern (18 bp):
AAAAAGTTAAATTTGTAA
Found at i:26771264 original size:20 final size:18
Alignment explanation
Indices: 26771222--26771270 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 18
26771212 TATTGAAAAA
*
26771222 TATATATTTTTATAAATT
1 TATATATTTTTAAAAATT
26771240 T-TATACTTTTTAAATAATT
1 TATATA-TTTTTAAA-AATT
26771259 TATATAATTTTT
1 TATAT-ATTTTT
26771271 TTGAATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 4 0.15
18 8 0.31
19 5 0.19
20 8 0.31
21 1 0.04
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
TATATATTTTTAAAAATT
Found at i:26774346 original size:3 final size:3
Alignment explanation
Indices: 26774338--26774362 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
26774328 TTTCAACTCT
26774338 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
26774363 ATAATCGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26776457 original size:13 final size:13
Alignment explanation
Indices: 26776408--26776458 Score: 52
Period size: 13 Copynumber: 4.1 Consensus size: 13
26776398 GCTAAAACTC
*
26776408 TTTTA-ATAATGT
1 TTTTATATAATAT
*
26776420 TTTTTTATAATAT
1 TTTTATATAATAT
* *
26776433 TTTAACAT-ATAT
1 TTTTATATAATAT
26776445 TTTTATATAATAT
1 TTTTATATAATAT
26776458 T
1 T
26776459 AGAGGCAAGA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
12 14 0.47
13 16 0.53
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (13 bp):
TTTTATATAATAT
Found at i:26780558 original size:7 final size:7
Alignment explanation
Indices: 26780546--26780570 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26780536 TTCCACTCTT
26780546 AATAGAA
1 AATAGAA
26780553 AATAGAA
1 AATAGAA
26780560 AATAGAA
1 AATAGAA
26780567 AATA
1 AATA
26780571 ACAGAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (7 bp):
AATAGAA
Found at i:26781196 original size:21 final size:21
Alignment explanation
Indices: 26781169--26781211 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
26781159 AATTTACTAT
* *
26781169 AATTTTTAAAAAATATTATTGA
1 AATTTTCAAAAAA-AGTATTGA
26781191 AATTTTCAAAAAAAGTATTGA
1 AATTTTCAAAAAAAGTATTGA
26781212 TTGTCGATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (21 bp):
AATTTTCAAAAAAAGTATTGA
Found at i:26782525 original size:17 final size:17
Alignment explanation
Indices: 26782488--26782526 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26782478 CCATATTATT
* *
26782488 TCTTTTGTTTCTTTTCC
1 TCTTTTGTTTCTTCTCA
*
26782505 TCTTTTGTTTCTTCTGA
1 TCTTTTGTTTCTTCTCA
26782522 TCTTT
1 TCTTT
26782527 GGTTCCCCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.03, C:0.21, G:0.08, T:0.69
Consensus pattern (17 bp):
TCTTTTGTTTCTTCTCA
Found at i:26782546 original size:11 final size:12
Alignment explanation
Indices: 26782529--26782578 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
26782519 TGATCTTTGG
*
26782529 TTCCCCTTCTTC
1 TTCCCCTTCTCC
26782541 -TCCCCTTTCTCC
1 TTCCCC-TTCTCC
26782553 TTCCCCTTC-CC
1 TTCCCCTTCTCC
*
26782564 TTTCCCCTTCCCC
1 -TTCCCCTTCTCC
26782577 TT
1 TT
26782579 GGTTTGCTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
11 7 0.21
12 19 0.58
13 7 0.21
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (12 bp):
TTCCCCTTCTCC
Found at i:26782564 original size:18 final size:18
Alignment explanation
Indices: 26782529--26782578 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
26782519 TGATCTTTGG
** *
26782529 TTCCCCTTCTTCTCCCCT
1 TTCCCCTTCCCCTTCCCT
*
26782547 TTCTCCTTCCCCTTCCCT
1 TTCCCCTTCCCCTTCCCT
26782565 TTCCCCTTCCCCTT
1 TTCCCCTTCCCCTT
26782579 GGTTTGCTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (18 bp):
TTCCCCTTCCCCTTCCCT
Found at i:26783544 original size:20 final size:20
Alignment explanation
Indices: 26783515--26783553 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26783505 ATATTTTCTG
*
26783515 GTAAATCATTTTACAGAAAA
1 GTAAAACATTTTACAGAAAA
*
26783535 GTAAAACATTTTCCAGAAA
1 GTAAAACATTTTACAGAAA
26783554 TCATTTTACG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (20 bp):
GTAAAACATTTTACAGAAAA
Found at i:26783560 original size:14 final size:14
Alignment explanation
Indices: 26783537--26783576 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
26783527 ACAGAAAAGT
*
26783537 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
26783551 AAATCATTTTACGG
1 AAAACATTTTACAG
26783565 AAAACATTTTAC
1 AAAACATTTTAC
26783577 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:26783826 original size:19 final size:18
Alignment explanation
Indices: 26783810--26783848 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
26783800 TGTAAATTCA
26783810 ATATA-TTTTATTAAATT
1 ATATATTTTTATTAAATT
26783827 ATATATTTTTATTAAATT
1 ATATATTTTTATTAAATT
26783845 ATAT
1 ATAT
26783849 TTAATAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATATATTTTTATTAAATT
Found at i:26783863 original size:13 final size:13
Alignment explanation
Indices: 26783845--26783869 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26783835 TTATTAAATT
26783845 ATATTTAATAATA
1 ATATTTAATAATA
26783858 ATATTTAATAAT
1 ATATTTAATAAT
26783870 TTTTTAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:26784038 original size:21 final size:21
Alignment explanation
Indices: 26784012--26784066 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
26784002 ACCGCTGTTT
* *
26784012 CTAATCTCACTGCTACATTATC
1 CTAATCTCACCGCTACAGTA-C
26784034 C-AATCTCACCGCTACAGTAC
1 CTAATCTCACCGCTACAGTAC
26784054 CTAATCTCACCGC
1 CTAATCTCACCGC
26784067 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 27 0.90
22 1 0.03
ACGTcount: A:0.27, C:0.38, G:0.07, T:0.27
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAC
Found at i:26784189 original size:8 final size:7
Alignment explanation
Indices: 26784162--26784187 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26784152 GACTTACAAA
26784162 AAAAATT
1 AAAAATT
26784169 AAAAATT
1 AAAAATT
26784176 AAAAATT
1 AAAAATT
26784183 AAAAA
1 AAAAA
26784188 ATAATAGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (7 bp):
AAAAATT
Found at i:26786329 original size:124 final size:125
Alignment explanation
Indices: 26786020--26786356 Score: 597
Period size: 124 Copynumber: 2.7 Consensus size: 125
26786010 CGTCTCTGGT
* * *
26786020 CAAATAGTATAAAATAGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
*
26786085 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATGATTTTTTTCTGATTTTTCTGAG
66 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATGAATTTTTTCTGATTTTTCTGAG
* *
26786145 TAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATTGCGCCCTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
26786210 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAAT-AATTTTTTCTGATGTTTT-TGAG
66 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATGAATTTTTTCTGAT-TTTTCTGAG
26786269 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
26786334 TGGACGCGATTTTGCTACAGTAG
66 TGGACGCGATTTTGCTACAGTAG
26786357 CAAGTTTGGG
Statistics
Matches: 203, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
124 102 0.50
125 101 0.50
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (125 bp):
CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATGAATTTTTTCTGATTTTTCTGAG
Found at i:26789481 original size:10 final size:10
Alignment explanation
Indices: 26789466--26789490 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26789456 CAGATCTAAT
26789466 ATTATGTAAA
1 ATTATGTAAA
26789476 ATTATGTAAA
1 ATTATGTAAA
26789486 ATTAT
1 ATTAT
26789491 TAAGCCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:26789615 original size:56 final size:56
Alignment explanation
Indices: 26789479--26789613 Score: 150
Period size: 56 Copynumber: 2.4 Consensus size: 56
26789469 ATGTAAAATT
* * * *
26789479 ATGTAAAATTATTAAGCCAAAAATTTTTCTTAATGGTTAGAAAAATTTATCAAATA
1 ATGTAAAATTATTAAGCCAAAAAATTGTCTTAATGGTTAGAAAAATGTATCAAAAA
* * ** *
26789535 ATCTCAAAATT-TTAAGTCC-AAAAATTGTGTTAATGGTTATTAAAGTGT-TCAAAAA
1 ATGT-AAAATTATTAAG-CCAAAAAATTGTCTTAATGGTTAGAAAAATGTATCAAAAA
26789590 ATGTAAAATTATTAAGCCAAAAAA
1 ATGTAAAATTATTAAGCCAAAAAA
26789614 ATATGTAAAA
Statistics
Matches: 65, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
54 8 0.12
55 19 0.29
56 30 0.46
57 8 0.12
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (56 bp):
ATGTAAAATTATTAAGCCAAAAAATTGTCTTAATGGTTAGAAAAATGTATCAAAAA
Found at i:26789621 original size:26 final size:26
Alignment explanation
Indices: 26789585--26789641 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
26789575 TAAAGTGTTC
26789585 AAAAA-ATGTAAAATTATTAAGCCAA
1 AAAAATATGTAAAATTATTAAGCCAA
26789610 AAAAATATGTAAAATTATTAAGCCAA
1 AAAAATATGTAAAATTATTAAGCCAA
26789636 AAAAAT
1 AAAAAT
26789642 TTAGGTTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 5 0.16
26 26 0.84
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.25
Consensus pattern (26 bp):
AAAAATATGTAAAATTATTAAGCCAA
Found at i:26789690 original size:28 final size:27
Alignment explanation
Indices: 26789639--26790023 Score: 437
Period size: 28 Copynumber: 13.4 Consensus size: 27
26789629 AAGCCAAAAA
* * *
26789639 AATTTAGGTTTGTTTTGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGG-TTTTAATT
*
26789667 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGG-TTTTAATT
26789696 AATTTAGGTTAGATTAGGGTTTTAAATT
1 AATTTAGGTTAGATTAGGGTTTT-AATT
* *
26789724 AATTTAGGTTAGATTAGAGTTTTTAGTT
1 AATTTAGGTTAGATTAG-GGTTTTAATT
26789752 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGG-TTTTAATT
26789780 AATTTAGGTTAGAGTTAGGGTTTTAAATT
1 AATTTAGGTTAGA-TTAGGGTTTT-AATT
*
26789809 AATTTAGGTTAGATTAGAGTTTTAAATT
1 AATTTAGGTTAGATTAGGGTTTT-AATT
* *
26789837 AATTTAGGTTAGATTAGAGTTTTTAGTT
1 AATTTAGGTTAGATTAG-GGTTTTAATT
26789865 AATTTAGGTTAGATTAGGGTTTTAAATT
1 AATTTAGGTTAGATTAGGGTTTT-AATT
*
26789893 AATTTAGGTTAAGGTTAGATTAGGGTTTTTAGTT
1 AA--T---TT-AGGTTAGATTAGGG-TTTTAATT
*
26789927 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGG-TTTTAATT
* *
26789956 AATTTAGGTCAGGGTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGG-TTTTAATT
* *
26789985 AATTTAGGTTAGATCAGTGTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTAATT
26790012 AATTTAGGTTAG
1 AATTTAGGTTAG
26790024 GGTTAGGTTA
Statistics
Matches: 319, Mismatches: 22, Indels: 33
0.85 0.06 0.09
Matches are distributed among these distances:
27 30 0.09
28 149 0.47
29 113 0.35
30 1 0.00
32 1 0.00
33 2 0.01
34 19 0.06
35 4 0.01
ACGTcount: A:0.28, C:0.01, G:0.23, T:0.49
Consensus pattern (27 bp):
AATTTAGGTTAGATTAGGGTTTTAATT
Found at i:26789786 original size:113 final size:113
Alignment explanation
Indices: 26789639--26790030 Score: 554
Period size: 113 Copynumber: 3.4 Consensus size: 113
26789629 AAGCCAAAAA
* * *
26789639 AATTTAGGTTTGTTTTGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGG
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGG
26789704 TTAGATTAGGGTTTTAAATTAATTTAGGTTAGATTAGAGTTTTTAGTT
66 TTAGATTAGGGTTTTAAATTAATTTAGGTTAGATTAGAGTTTTTAGTT
*
26789752 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGAG-TTAGGGTTTTAAATTAATTTAG
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAG-GTTTAGGGTTTTTAATTAATTTAG
*
26789816 GTTAGATTAGAGTTTTAAATTAATTTAGGTTAGATTAGAGTTTTTAGTT
65 GTTAGATTAGGGTTTTAAATTAATTTAGGTTAGATTAGAGTTTTTAGTT
* *
26789865 AATTTAGGTTAGATTAGGGTTTTAAATTAATTTAGGTTAAGGTTAGATTAGGGTTTTTAGTTAAT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTT-AGG-T---TTAGGGTTTTTAATTAAT
* * * * * *
26789930 TTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTCAGGGTTAGGGTTTTTAATT
61 TTAGGTTA-GATTAGGGTTTTAAATTAATTTAGGTTA-GATTAGAGTTTTTAGTT
* * *
26789985 AATTTAGGTTAGATCAGTG-TTTTAATTAATTTAGGTTAGGGTTAGG
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGG
26790031 TTAGGGTTTT
Statistics
Matches: 251, Mismatches: 19, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
113 144 0.57
114 8 0.03
118 27 0.11
119 41 0.16
120 31 0.12
ACGTcount: A:0.28, C:0.01, G:0.23, T:0.48
Consensus pattern (113 bp):
AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGG
TTAGATTAGGGTTTTAAATTAATTTAGGTTAGATTAGAGTTTTTAGTT
Found at i:26790024 original size:85 final size:85
Alignment explanation
Indices: 26789639--26790030 Score: 529
Period size: 85 Copynumber: 4.6 Consensus size: 85
26789629 AAGCCAAAAA
* * * * *
26789639 AATTTAGGTTTGTTTTGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGG
1 AATTTAGGTTAGATTAGAGTTTTTAATTAATTTAGGTTAGGATTAGGGTTTTTAATTAATTTAGG
26789704 TTAGATTAGGGTTTTAAATT
66 TTAGATTAGGGTTTTAAATT
*
26789724 AATTTAGGTTAGATTAGAGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGG
1 AATTTAGGTTAGATTAGAGTTTTTAATTAATTTAGGTTAGGATTAGGGTTTTTAATTAATTTAGG
26789788 TTAGAGTTAGGGTTTTAAATT
66 TTAGA-TTAGGGTTTTAAATT
* * *
26789809 AATTTAGGTTAGATTAGAGTTTTAAATTAATTTAGGTTA-GATTAGAGTTTTTAGTTAATTTAGG
1 AATTTAGGTTAGATTAGAGTTTTTAATTAATTTAGGTTAGGATTAGGGTTTTTAATTAATTTAGG
26789873 TTAGATTAGGGTTTTAAATT
66 TTAGATTAGGGTTTTAAATT
* * *
26789893 AATTTAGGTTAAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
1 AA--T---TT-AGGTTAGATTAGAGTTTTTAATTAATTTAGGTTAGGATTAGGGTTTTTAATTAA
* * *
26789958 TTTAGGTCAGGGTTAGGGTTTTTAATT
60 TTTAGGTTA-GATTAGGGTTTTAAATT
* * *
26789985 AATTTAGGTTAGATCAGTG-TTTTAATTAATTTAGGTTAGGGTTAGG
1 AATTTAGGTTAGATTAGAGTTTTTAATTAATTTAGGTTAGGATTAGG
26790031 TTAGGGTTTT
Statistics
Matches: 275, Mismatches: 23, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
84 46 0.17
85 139 0.51
86 13 0.05
87 2 0.01
89 2 0.01
90 32 0.12
91 24 0.09
92 17 0.06
ACGTcount: A:0.28, C:0.01, G:0.23, T:0.48
Consensus pattern (85 bp):
AATTTAGGTTAGATTAGAGTTTTTAATTAATTTAGGTTAGGATTAGGGTTTTTAATTAATTTAGG
TTAGATTAGGGTTTTAAATT
Done.