Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 90 of 208
Found at i:31172800 original size:17 final size:17
Alignment explanation
Indices: 31172778--31172840 Score: 90
Period size: 17 Copynumber: 3.7 Consensus size: 17
31172768 TGGCCCAAAA
*
31172778 CCCACACGCTCATGTGG
1 CCCACACGCCCATGTGG
31172795 CCCACACGCCCATGTGG
1 CCCACACGCCCATGTGG
* * *
31172812 CCTACACGCCCGTGAGG
1 CCCACACGCCCATGTGG
31172829 CCCACACGCCCA
1 CCCACACGCCCA
31172841 ATCTGGCCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.19, C:0.48, G:0.22, T:0.11
Consensus pattern (17 bp):
CCCACACGCCCATGTGG
Found at i:31172831 original size:34 final size:32
Alignment explanation
Indices: 31172793--31172867 Score: 98
Period size: 32 Copynumber: 2.3 Consensus size: 32
31172783 ACGCTCATGT
*
31172793 GGCCCACACGCCC-ATGTGGCCTACACGCCCGTGA
1 GGCCCACACGCCCAATCTGGCCTA-A--CCCGTGA
*
31172827 GGCCCACACGCCCAATCTGGCCTAACCCGTGT
1 GGCCCACACGCCCAATCTGGCCTAACCCGTGA
31172859 GGCCCACAC
1 GGCCCACAC
31172868 AGCCACAGTC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
32 15 0.39
34 14 0.37
35 9 0.24
ACGTcount: A:0.19, C:0.45, G:0.24, T:0.12
Consensus pattern (32 bp):
GGCCCACACGCCCAATCTGGCCTAACCCGTGA
Found at i:31172863 original size:32 final size:33
Alignment explanation
Indices: 31172790--31172867 Score: 106
Period size: 34 Copynumber: 2.4 Consensus size: 33
31172780 CACACGCTCA
*
31172790 TGTGGCCCACACGCCCATGTGGCCTACACGCCCG
1 TGTGGCCCACACGCCCATCTGGCCTACAC-CCCG
*
31172824 TGAGGCCCACACGCCCAATCTGGCCTA-A-CCCG
1 TGTGGCCCACACGCCC-ATCTGGCCTACACCCCG
31172856 TGTGGCCCACAC
1 TGTGGCCCACAC
31172868 AGCCACAGTC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
32 15 0.38
34 16 0.40
35 9 0.22
ACGTcount: A:0.18, C:0.44, G:0.24, T:0.14
Consensus pattern (33 bp):
TGTGGCCCACACGCCCATCTGGCCTACACCCCG
Found at i:31175526 original size:51 final size:51
Alignment explanation
Indices: 31175437--31175550 Score: 158
Period size: 51 Copynumber: 2.2 Consensus size: 51
31175427 AGAAATGATG
* *
31175437 AAAATGGAGAAATGGAGAAATGGAAAACATTTAGAATGATTATGGTTTTCTCC
1 AAAAT-GA-AAATGGAGAAATGGAAAACATTTAAAATGAATATGGTTTTCTCC
* *
31175490 AAAATGAAAATGGAGAAAT-GAAATCATTTGAAAATGAATGTGGTTTTCTCC
1 AAAATGAAAATGGAGAAATGGAAAACATTT-AAAATGAATATGGTTTTCTCC
31175541 AAAATGAAAA
1 AAAATGAAAA
31175551 ATAAAAATGA
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
50 9 0.16
51 40 0.71
52 2 0.04
53 5 0.09
ACGTcount: A:0.46, C:0.07, G:0.20, T:0.27
Consensus pattern (51 bp):
AAAATGAAAATGGAGAAATGGAAAACATTTAAAATGAATATGGTTTTCTCC
Found at i:31179411 original size:25 final size:25
Alignment explanation
Indices: 31179351--31179413 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 25
31179341 ATCGGATTCG
*
31179351 TTAT-TGTAAAGGAAATGTCATGGT
1 TTATATGTAAAGGAAATGTCACGGT
*
31179375 TATATATGTAAAGGAAATGTTACGGT
1 T-TATATGTAAAGGAAATGTCACGGT
31179401 TTATATGTAAAGG
1 TTATATGTAAAGG
31179414 TACACTATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
24 1 0.03
25 15 0.43
26 19 0.54
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.37
Consensus pattern (25 bp):
TTATATGTAAAGGAAATGTCACGGT
Found at i:31184139 original size:30 final size:30
Alignment explanation
Indices: 31184103--31184164 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
31184093 AAGTAGCAAG
31184103 CTCATTCTATTTTTAAAACGCGAAAACTAA
1 CTCATTCTATTTTTAAAACGCGAAAACTAA
31184133 CTCATTCTATTTTTAAAACGCGAAAACTAA
1 CTCATTCTATTTTTAAAACGCGAAAACTAA
31184163 CT
1 CT
31184165 TAAAGGTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.34
Consensus pattern (30 bp):
CTCATTCTATTTTTAAAACGCGAAAACTAA
Found at i:31185058 original size:20 final size:20
Alignment explanation
Indices: 31185033--31185070 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
31185023 AAATGAAAAT
*
31185033 AAATAAAATTATCATAAAGC
1 AAATAAAATCATCATAAAGC
*
31185053 AAATAATATCATCATAAA
1 AAATAAAATCATCATAAA
31185071 TATAATATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.11, G:0.03, T:0.26
Consensus pattern (20 bp):
AAATAAAATCATCATAAAGC
Found at i:31188248 original size:13 final size:13
Alignment explanation
Indices: 31188230--31188255 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31188220 AAAGTGCGAG
31188230 CCTGTTGAAGACA
1 CCTGTTGAAGACA
31188243 CCTGTTGAAGACA
1 CCTGTTGAAGACA
31188256 ATATGCAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
CCTGTTGAAGACA
Found at i:31189318 original size:13 final size:13
Alignment explanation
Indices: 31189300--31189325 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31189290 AAAGTGCGAG
31189300 CCTGTTGAAGACA
1 CCTGTTGAAGACA
31189313 CCTGTTGAAGACA
1 CCTGTTGAAGACA
31189326 ATATGCAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
CCTGTTGAAGACA
Found at i:31194401 original size:5 final size:6
Alignment explanation
Indices: 31194387--31194411 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
31194377 GGCTCTATTT
31194387 AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA A
31194412 TTCAAGTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:31195260 original size:2 final size:2
Alignment explanation
Indices: 31195253--31195289 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
31195243 TTTAAAGTTA
*
31195253 AT AT AT AT AT AT AT AT TT AT AT AT AT AT -T AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
31195290 ATAAAACAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:31195357 original size:5 final size:5
Alignment explanation
Indices: 31195330--31195391 Score: 51
Period size: 5 Copynumber: 12.6 Consensus size: 5
31195320 ATTATAAATA
*
31195330 AAAAG -AAAG AAACG AAACA- AAAAG AAAA- AGAAAG -AAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAA-AG AAAAG AAAAG A-AAAG AAAAG AAAAG AAAAG
*
31195378 AAAAAG GAAAG AAA
1 -AAAAG AAAAG AAA
31195392 GGAAGGAGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
4 10 0.22
5 31 0.67
6 5 0.11
ACGTcount: A:0.77, C:0.03, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:31195363 original size:25 final size:24
Alignment explanation
Indices: 31195329--31195392 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 24
31195319 TATTATAAAT
31195329 AAAAAGAAAGAAACGAAACA-AAAAG
1 AAAAAGAAAGAAA-GAAA-AGAAAAG
31195354 AAAAAGAAAGAAAGAAAAGAAAAG
1 AAAAAGAAAGAAAGAAAAGAAAAG
31195378 AAAAAGGAAAGAAAG
1 AAAAA-GAAAGAAAG
31195393 GAAGGAGAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
23 1 0.03
24 14 0.38
25 22 0.59
ACGTcount: A:0.77, C:0.03, G:0.20, T:0.00
Consensus pattern (24 bp):
AAAAAGAAAGAAAGAAAAGAAAAG
Found at i:31195368 original size:29 final size:29
Alignment explanation
Indices: 31195331--31195392 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
31195321 TTATAAATAA
*
31195331 AAAGAAAGAAACG-AAACAAAAAGAAAAAG
1 AAAGAAAGAAAAGAAAACAAAAAG-AAAAG
* *
31195360 AAAGAAAGAAAAGAAAAGAAAAAGGAAAG
1 AAAGAAAGAAAAGAAAACAAAAAGAAAAG
31195389 AAAG
1 AAAG
31195393 GAAGGAGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 20 0.69
30 9 0.31
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (29 bp):
AAAGAAAGAAAAGAAAACAAAAAGAAAAG
Found at i:31198288 original size:18 final size:19
Alignment explanation
Indices: 31198265--31198302 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
31198255 TAATATTTTT
31198265 TCAT-AAAAATATTAAAAA
1 TCATAAAAAATATTAAAAA
*
31198283 TCATAAAAAATTTTAAAAA
1 TCATAAAAAATATTAAAAA
31198302 T
1 T
31198303 AAGCAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
TCATAAAAAATATTAAAAA
Found at i:31198310 original size:19 final size:19
Alignment explanation
Indices: 31198269--31198312 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
31198259 ATTTTTTCAT
* *
31198269 AAAAATATTAAAAATCATA
1 AAAAATATTAAAAATAAGA
*
31198288 AAAAATTTTAAAAATAAGCA
1 AAAAATATTAAAAATAAG-A
31198308 AAAAA
1 AAAAA
31198313 CCAAGAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (19 bp):
AAAAATATTAAAAATAAGA
Found at i:31198403 original size:10 final size:10
Alignment explanation
Indices: 31198390--31198569 Score: 57
Period size: 10 Copynumber: 18.7 Consensus size: 10
31198380 CTATGAAAAA
31198390 ATAAAATATT
1 ATAAAATATT
31198400 AT-AAATATT
1 ATAAAATATT
31198409 AT-AAA-A-T
1 ATAAAATATT
31198416 ATAAAATA-T
1 ATAAAATATT
31198425 A-AAAA-ATT
1 ATAAAATATT
*
31198433 CTAATAA-ATT
1 ATAA-AATATT
*
31198443 ATAAAATCAAT
1 ATAAAAT-ATT
31198454 A-AAACATATT
1 ATAAA-ATATT
* *
31198464 -TAAAACACT
1 ATAAAATATT
*
31198473 -TAAAATGTT
1 ATAAAATATT
* *
31198482 ATAAAAAAGT
1 ATAAAATATT
* *
31198492 ATAAAAAATC
1 ATAAAATATT
*
31198502 ATAAAAAAATT
1 AT-AAAATATT
*
31198513 ATAAAAAATT
1 ATAAAATATT
*
31198523 GTTAAAA-A-T
1 -ATAAAATATT
*
31198532 ATTAAAAT-TG
1 A-TAAAATATT
31198542 ATATAAAT-TT
1 ATA-AAATATT
31198552 ATAAAAATATT
1 AT-AAAATATT
*
31198563 AAAAAAT
1 ATAAAAT
31198570 CATAAAAACT
Statistics
Matches: 132, Mismatches: 20, Indels: 36
0.70 0.11 0.19
Matches are distributed among these distances:
7 4 0.03
8 9 0.07
9 36 0.27
10 60 0.45
11 23 0.17
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.32
Consensus pattern (10 bp):
ATAAAATATT
Found at i:31198419 original size:26 final size:27
Alignment explanation
Indices: 31198371--31198424 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
31198361 TGATATAAAC
31198371 TTATAAAAACTATGAAAAAATAAAATA
1 TTATAAAAACTATGAAAAAATAAAATA
* * *
31198398 TTATAAATATTAT-AAAATATAAAATA
1 TTATAAAAACTATGAAAAAATAAAATA
31198424 T
1 T
31198425 AAAAAATTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (27 bp):
TTATAAAAACTATGAAAAAATAAAATA
Found at i:31198528 original size:11 final size:10
Alignment explanation
Indices: 31198480--31198577 Score: 69
Period size: 10 Copynumber: 9.9 Consensus size: 10
31198470 ACTTAAAATG
31198480 TTATAAAAAA
1 TTATAAAAAA
*
31198490 GTATAAAAAA
1 TTATAAAAAA
*
31198500 TCATAAAAAAA
1 TTAT-AAAAAA
31198511 TTATAAAAAA
1 TTATAAAAAA
* *
31198521 TTGTTAAAAA
1 TTATAAAAAA
*
31198531 -TAT-TAAAA
1 TTATAAAAAA
* *
31198539 TTGATATAAAT
1 TT-ATAAAAAA
31198550 TTAT-AAAAA
1 TTATAAAAAA
31198559 -TATTAAAAAA
1 TTA-TAAAAAA
*
31198569 TCATAAAAA
1 TTATAAAAA
31198578 CTTGAGCTAG
Statistics
Matches: 69, Mismatches: 12, Indels: 14
0.73 0.13 0.15
Matches are distributed among these distances:
8 6 0.09
9 7 0.10
10 40 0.58
11 16 0.23
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:31198528 original size:22 final size:21
Alignment explanation
Indices: 31198474--31198535 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
31198464 TAAAACACTT
*
31198474 AAAATGTTATAAAAAAGTATAA
1 AAAATGTTA-AAAAAATTATAA
**
31198496 AAAATCATAAAAAAATTATAA
1 AAAATGTTAAAAAAATTATAA
*
31198517 AAAATTGTTAAAAATATTA
1 AAAA-TGTTAAAAAAATTA
31198536 AAATTGATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 15 0.45
22 18 0.55
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.29
Consensus pattern (21 bp):
AAAATGTTAAAAAAATTATAA
Found at i:31198529 original size:20 final size:20
Alignment explanation
Indices: 31198506--31198582 Score: 63
Period size: 19 Copynumber: 4.0 Consensus size: 20
31198496 AAAATCATAA
*
31198506 AAAAATTATAAAAAATTGTT
1 AAAAATTATAAAAAATTGAT
*
31198526 AAAAA-TAT-TAAAATTGAT
1 AAAAATTATAAAAAATTGAT
*
31198544 ATAAATTTATAAAAATATT-A-
1 A-AAAATTATAAAAA-ATTGAT
* *
31198564 AAAAATCATAAAAACTTGA
1 AAAAATTATAAAAAATTGA
31198583 GCTAGGTTGG
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
18 11 0.24
19 18 0.40
20 9 0.20
21 4 0.09
22 3 0.07
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (20 bp):
AAAAATTATAAAAAATTGAT
Found at i:31200051 original size:18 final size:18
Alignment explanation
Indices: 31200016--31200049 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
31200006 GTTCACTCTG
31200016 TTTTTCAGTTTTACTTTA
1 TTTTTCAGTTTTACTTTA
*
31200034 TTTTT-AGTTTTGCTTT
1 TTTTTCAGTTTTACTTT
31200050 TAAAAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.71
Consensus pattern (18 bp):
TTTTTCAGTTTTACTTTA
Found at i:31202794 original size:51 final size:51
Alignment explanation
Indices: 31202734--31203019 Score: 274
Period size: 51 Copynumber: 5.6 Consensus size: 51
31202724 GATGAACACG
* **
31202734 TGTGTAGTACTGTGTGAAGGCTACTATGTGTATTGATAAATGATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTACCGATAAATGATGGTCACA
* * * * * *
31202785 TGTGTAGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCT-TTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTACCGATAA-ATGATGGTCACA
* * * *
31202836 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTACCGATAAATGATGGTCACA
* * * *
31202887 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACTGA-AAA-GCTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTACCGATAAATG--ATGGTCACA
* * *** * **
31202938 TGTGTAGTACTATGTGAAGGCTACTACGTGAACC-ATAAAACTTGATCATG
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTACCGATAAATGATGGTCACA
* *
31202988 TGTGTAGTACTATGTGAAGGTTACTACGTGTA
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTA
31203020 TCGAATGATA
Statistics
Matches: 193, Mismatches: 36, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
49 1 0.01
50 42 0.22
51 149 0.77
52 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTATGTGTACCGATAAATGATGGTCACA
Found at i:31202906 original size:102 final size:102
Alignment explanation
Indices: 31202730--31202969 Score: 417
Period size: 102 Copynumber: 2.4 Consensus size: 102
31202720 TATCGATGAA
* * *
31202730 CACGTGTGTAGTACTGTGTGAAGGCTACTATGTGTATTGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
31202795 TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
31202832 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* *
31202897 TAAGTGAAGGCTACTATGTGTACTGAAAAGCTTTGGT
66 TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
*
31202934 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAA
31202970 CCATAAAACT
Statistics
Matches: 131, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 131 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
Found at i:31204163 original size:24 final size:24
Alignment explanation
Indices: 31204136--31204187 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
31204126 TTAGTAAGTC
*
31204136 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
31204160 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
31204184 AAAT
1 AAAT
31204188 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:31205184 original size:56 final size:56
Alignment explanation
Indices: 31205098--31205204 Score: 205
Period size: 56 Copynumber: 1.9 Consensus size: 56
31205088 TTACAATAGT
31205098 GACACCTTTTGTCTCGTTTCTTTGATGCTACCAAAAAGGAAGCTTGTCTATCTAGC
1 GACACCTTTTGTCTCGTTTCTTTGATGCTACCAAAAAGGAAGCTTGTCTATCTAGC
*
31205154 GACACCTTTTGTCTCGTTTCTTTGATGCTACCAAAACGGAAGCTTGTCTAT
1 GACACCTTTTGTCTCGTTTCTTTGATGCTACCAAAAAGGAAGCTTGTCTAT
31205205 TTGCTTTGCT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (56 bp):
GACACCTTTTGTCTCGTTTCTTTGATGCTACCAAAAAGGAAGCTTGTCTATCTAGC
Found at i:31206172 original size:24 final size:24
Alignment explanation
Indices: 31206145--31206196 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
31206135 TTAGTAAGTC
*
31206145 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
31206169 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
31206193 AAAT
1 AAAT
31206197 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:31208844 original size:30 final size:29
Alignment explanation
Indices: 31208798--31208874 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 29
31208788 CCATTACAAA
*
31208798 ATAAAATTTTAAATAAAAAC-TTATTATTTT
1 ATAAAA-TTAAAATAAAAACTTTA-TATTTT
**
31208828 ATTAAAATTAAAATAAACTCTTTATATTTT
1 A-TAAAATTAAAATAAAAACTTTATATTTT
**
31208858 ATATTATTAAAATAAAA
1 ATAAAATTAAAATAAAA
31208875 TCACATATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 13 0.33
30 18 0.46
31 8 0.21
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (29 bp):
ATAAAATTAAAATAAAAACTTTATATTTT
Found at i:31210084 original size:16 final size:16
Alignment explanation
Indices: 31210063--31210098 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
31210053 TTTTACATAA
*
31210063 ATATAAATATTTGTTT
1 ATATAAATATTTGCTT
31210079 ATATAAATATTTGCTT
1 ATATAAATATTTGCTT
31210095 ATAT
1 ATAT
31210099 TAATTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.53
Consensus pattern (16 bp):
ATATAAATATTTGCTT
Found at i:31210378 original size:17 final size:17
Alignment explanation
Indices: 31210353--31210390 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
31210343 ATCATTCACT
* *
31210353 CTTTCTTTTTCAATTTA
1 CTTTATTTTTAAATTTA
31210370 CTTTATTTTTAAATTTA
1 CTTTATTTTTAAATTTA
31210387 CTTT
1 CTTT
31210391 TAAAAATCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.21, C:0.13, G:0.00, T:0.66
Consensus pattern (17 bp):
CTTTATTTTTAAATTTA
Found at i:31213515 original size:45 final size:45
Alignment explanation
Indices: 31213463--31213683 Score: 265
Period size: 45 Copynumber: 5.0 Consensus size: 45
31213453 GATTAGACTG
* *
31213463 GATATCCATATAAATAAAGGTTGTTGCTAAGTGCTGATTCCACCA
1 GATATCCATGTAAATAAAGGTGGTTGCTAAGTGCTGATTCCACCA
*
31213508 GATATCCATGTAAGT--AGGTGGTTGCTAAGTGCTGATTCCACCA
1 GATATCCATGTAAATAAAGGTGGTTGCTAAGTGCTGATTCCACCA
* * * *
31213551 GATATCC-TCG-AATCTAAAGATGGTTGCTAAGTGCTAATTCCACCG
1 GATATCCAT-GTAA-ATAAAGGTGGTTGCTAAGTGCTGATTCCACCA
* *
31213596 GATATCCATGTAAGT-AAGGTGGTTGCTAAGTGCTGATTCCACCG
1 GATATCCATGTAAATAAAGGTGGTTGCTAAGTGCTGATTCCACCA
* * *
31213640 GATAACCTTG-AATATAAAGGTGGTTGCTAAGTGTTGATTCCACC
1 GATATCCATGTAA-ATAAAGGTGGTTGCTAAGTGCTGATTCCACC
31213684 GTGTAATTAT
Statistics
Matches: 154, Mismatches: 14, Indels: 16
0.84 0.08 0.09
Matches are distributed among these distances:
42 3 0.02
43 38 0.25
44 36 0.23
45 74 0.48
46 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (45 bp):
GATATCCATGTAAATAAAGGTGGTTGCTAAGTGCTGATTCCACCA
Found at i:31213664 original size:89 final size:88
Alignment explanation
Indices: 31213476--31213684 Score: 328
Period size: 89 Copynumber: 2.4 Consensus size: 88
31213466 ATCCATATAA
* *
31213476 ATAAAGGTTGTTGCTAAGTGCTGATTCCACCAGATATCCATGTAAGTAGGTGGTTGCTAAGTGCT
1 ATAAAGGTGGTTGCTAAGTGCTGATTCCACCGGATATCCATGTAAGTAGGTGGTTGCTAAGTGCT
*
31213541 GATTCCACCAGATATCCTCGAAT
66 GATTCCACCAGATAACCTCGAAT
* * *
31213564 CTAAAGATGGTTGCTAAGTGCTAATTCCACCGGATATCCATGTAAGTAAGGTGGTTGCTAAGTGC
1 ATAAAGGTGGTTGCTAAGTGCTGATTCCACCGGATATCCATGTAAGT-AGGTGGTTGCTAAGTGC
* *
31213629 TGATTCCACCGGATAACCTTGAAT
65 TGATTCCACCAGATAACCTCGAAT
*
31213653 ATAAAGGTGGTTGCTAAGTGTTGATTCCACCG
1 ATAAAGGTGGTTGCTAAGTGCTGATTCCACCG
31213685 TGTAATTATT
Statistics
Matches: 108, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
88 42 0.39
89 66 0.61
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (88 bp):
ATAAAGGTGGTTGCTAAGTGCTGATTCCACCGGATATCCATGTAAGTAGGTGGTTGCTAAGTGCT
GATTCCACCAGATAACCTCGAAT
Found at i:31216473 original size:30 final size:31
Alignment explanation
Indices: 31216419--31216478 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
31216409 AAACCTTTTA
31216419 TTTTCCCCCAAAATTTTTACTTCC-TCCCAC
1 TTTTCCCCCAAAATTTTTACTTCCTTCCCAC
* *
31216449 TTTTCCCCTAAAACTTTTT-TTTCCTTCCCA
1 TTTTCCCCCAAAA-TTTTTACTTCCTTCCCA
31216479 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.18, C:0.37, G:0.00, T:0.45
Consensus pattern (31 bp):
TTTTCCCCCAAAATTTTTACTTCCTTCCCAC
Found at i:31217915 original size:21 final size:22
Alignment explanation
Indices: 31217885--31217925 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
31217875 ATATCTAAAT
31217885 TACCACACACACATA-TATATA
1 TACCACACACACATACTATATA
*
31217906 TACCATACACACATACTATA
1 TACCACACACACATACTATA
31217926 AAACTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.24
Consensus pattern (22 bp):
TACCACACACACATACTATATA
Found at i:31231974 original size:14 final size:15
Alignment explanation
Indices: 31231942--31231975 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
31231932 CCACTCTTGG
31231942 TTTTACAAACCCAAT
1 TTTTACAAACCCAAT
* *
31231957 TTTTACTAACCCGAT
1 TTTTACAAACCCAAT
31231972 TTTT
1 TTTT
31231976 GCGATGTGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.03, T:0.44
Consensus pattern (15 bp):
TTTTACAAACCCAAT
Found at i:31240710 original size:25 final size:25
Alignment explanation
Indices: 31240659--31240716 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
31240649 TTAGCACATA
*
31240659 AACGGGAAACTCTTTCGAGCCACGT
1 AACGGGAAACTCTGTCGAGCCACGT
* *
31240684 AACGGGAAACTCATGT-GATCCATGT
1 AACGGGAAACTC-TGTCGAGCCACGT
31240709 AACGGGAA
1 AACGGGAA
31240717 GCTCCAGAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 27 0.93
26 2 0.07
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (25 bp):
AACGGGAAACTCTGTCGAGCCACGT
Found at i:31240751 original size:23 final size:25
Alignment explanation
Indices: 31240675--31240753 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
31240665 AAACTCTTTC
* * *
31240675 GAGCCACGTAACGGGAAACTCATGT
1 GAGCCATGTAACGGGAAGCTCATAT
* *
31240700 GATCCATGTAACGGGAAGCTCCAGA-
1 GAGCCATGTAACGGGAAGCT-CATAT
31240725 GAGCCAT-T-ACGGGAAGCTCATAT
1 GAGCCATGTAACGGGAAGCTCATAT
31240748 GAGCCA
1 GAGCCA
31240754 ATGTCAGGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
22 3 0.07
23 16 0.36
24 1 0.02
25 23 0.51
26 2 0.04
ACGTcount: A:0.32, C:0.24, G:0.28, T:0.16
Consensus pattern (25 bp):
GAGCCATGTAACGGGAAGCTCATAT
Found at i:31242587 original size:22 final size:22
Alignment explanation
Indices: 31242562--31242603 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
31242552 AAAAGGAAAG
31242562 AAATATCATAAAAC-ATAAAACA
1 AAAT-TCATAAAACAATAAAACA
*
31242584 AAATTGATAAAACAATAAAA
1 AAATTCATAAAACAATAAAA
31242604 TGTTATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.69, C:0.10, G:0.02, T:0.19
Consensus pattern (22 bp):
AAATTCATAAAACAATAAAACA
Found at i:31243717 original size:21 final size:23
Alignment explanation
Indices: 31243675--31243717 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
31243665 TAATTAATCA
*
31243675 TAAACAGAAGCAAATCTCTTTTC
1 TAAACAGAAGCAAATATCTTTTC
*
31243698 TAAA-AGAAG-AAATATGTTTT
1 TAAACAGAAGCAAATATCTTTT
31243718 AAAAATTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (23 bp):
TAAACAGAAGCAAATATCTTTTC
Found at i:31243761 original size:21 final size:21
Alignment explanation
Indices: 31243737--31243792 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 21
31243727 CTGAACAATT
*
31243737 AAGAAAAAGA-GAAATACAAAA
1 AAGAAAAAGATCAAAT-CAAAA
*
31243758 AAG-AATAGATCAAATCAAAA
1 AAGAAAAAGATCAAATCAAAA
*
31243778 AAGAAATAGAATCAA
1 AAGAAAAAG-ATCAA
31243793 CAATTTGTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
20 13 0.43
21 12 0.40
22 5 0.17
ACGTcount: A:0.70, C:0.07, G:0.12, T:0.11
Consensus pattern (21 bp):
AAGAAAAAGATCAAATCAAAA
Found at i:31243778 original size:20 final size:23
Alignment explanation
Indices: 31243748--31243792 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
31243738 AGAAAAAGAG
31243748 AAATACAAAAAAG-AATAG-ATC
1 AAATACAAAAAAGAAATAGAATC
31243769 AAAT-CAAAAAAGAAATAGAATC
1 AAATACAAAAAAGAAATAGAATC
31243791 AA
1 AA
31243793 CAATTTGTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.36
21 9 0.41
22 5 0.23
ACGTcount: A:0.69, C:0.09, G:0.09, T:0.13
Consensus pattern (23 bp):
AAATACAAAAAAGAAATAGAATC
Found at i:31246635 original size:34 final size:34
Alignment explanation
Indices: 31246597--31246760 Score: 231
Period size: 34 Copynumber: 4.8 Consensus size: 34
31246587 AAAATATGTG
*
31246597 TGAACAGGAAAGATTCCCTGCAAGGAATGATGCA
1 TGAACAGGAAAGATTCCCTGCAAGAAATGATGCA
31246631 TGAACAGGAAAGATTCCCTGCAAGAAATGATGCA
1 TGAACAGGAAAGATTCCCTGCAAGAAATGATGCA
* * *
31246665 TGAACAGGAAAGATTCTCTGCAAGAAAAGACG-A
1 TGAACAGGAAAGATTCCCTGCAAGAAATGATGCA
* * *
31246698 GGTGAACATGAAAGATTCCCTGTAAGAAATGATGCG
1 --TGAACAGGAAAGATTCCCTGCAAGAAATGATGCA
*
31246734 TGAACAGGAAATATTCCCTGCAAGAAA
1 TGAACAGGAAAGATTCCCTGCAAGAAA
31246761 AGACAAGAAA
Statistics
Matches: 114, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
33 1 0.01
34 86 0.75
35 27 0.24
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.18
Consensus pattern (34 bp):
TGAACAGGAAAGATTCCCTGCAAGAAATGATGCA
Found at i:31246639 original size:17 final size:17
Alignment explanation
Indices: 31246619--31246674 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
31246609 ATTCCCTGCA
31246619 AGGAATGATGCATGAAC
1 AGGAATGATGCATGAAC
* * * *
31246636 AGGAAAGATTCCCTGCA-
1 AGGAATGA-TGCATGAAC
*
31246653 AGAAATGATGCATGAAC
1 AGGAATGATGCATGAAC
31246670 AGGAA
1 AGGAA
31246675 AGATTCTCTG
Statistics
Matches: 27, Mismatches: 10, Indels: 4
0.66 0.24 0.10
Matches are distributed among these distances:
16 5 0.19
17 17 0.63
18 5 0.19
ACGTcount: A:0.43, C:0.14, G:0.27, T:0.16
Consensus pattern (17 bp):
AGGAATGATGCATGAAC
Found at i:31246725 original size:69 final size:68
Alignment explanation
Indices: 31246597--31246764 Score: 239
Period size: 69 Copynumber: 2.5 Consensus size: 68
31246587 AAAATATGTG
* * *
31246597 TGAACAGGAAAGATTCCCTGCAAGGAATGATGCATGAACAGGAAAGATTCCCTGCAAGAAATGAT
1 TGAACAGGAAAGATTCCCTGCAAGAAAAGACGCATGAACAGGAAAGATTCCCTGCAAGAAATGAT
31246662 GCA
66 GCA
* * *
31246665 TGAACAGGAAAGATTCTCTGCAAGAAAAGACG-AGGTGAACATGAAAGATTCCCTGTAAGAAATG
1 TGAACAGGAAAGATTCCCTGCAAGAAAAGACGCA--TGAACAGGAAAGATTCCCTGCAAGAAATG
*
31246729 ATGCG
64 ATGCA
*
31246734 TGAACAGGAAATATTCCCTGCAAGAAAAGAC
1 TGAACAGGAAAGATTCCCTGCAAGAAAAGAC
31246765 AAGAAAAAGA
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
67 1 0.01
68 28 0.31
69 60 0.67
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.18
Consensus pattern (68 bp):
TGAACAGGAAAGATTCCCTGCAAGAAAAGACGCATGAACAGGAAAGATTCCCTGCAAGAAATGAT
GCA
Found at i:31249713 original size:17 final size:18
Alignment explanation
Indices: 31249675--31249714 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
31249665 TAAGTTCAAA
*
31249675 TAAAACTCTTAAGTATAC
1 TAAAACTCTTAAGTAAAC
*
31249693 TAAAACTC-TAATTAAAC
1 TAAAACTCTTAAGTAAAC
31249710 TAAAA
1 TAAAA
31249715 TTTCTTGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.53, C:0.15, G:0.03, T:0.30
Consensus pattern (18 bp):
TAAAACTCTTAAGTAAAC
Found at i:31252320 original size:3 final size:3
Alignment explanation
Indices: 31252312--31252336 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
31252302 AGCTTGTTTG
31252312 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
31252337 TAAAGCAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:31252872 original size:26 final size:26
Alignment explanation
Indices: 31252836--31252887 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
31252826 ACTCAGAGTG
31252836 ATAGTTTCTTTTATTGATAATCAAAT
1 ATAGTTTCTTTTATTGATAATCAAAT
31252862 ATAGTTTCTTTTATTGATAATCAAAT
1 ATAGTTTCTTTTATTGATAATCAAAT
31252888 TTATCCTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.50
Consensus pattern (26 bp):
ATAGTTTCTTTTATTGATAATCAAAT
Found at i:31253916 original size:106 final size:106
Alignment explanation
Indices: 31253730--31254143 Score: 585
Period size: 106 Copynumber: 3.9 Consensus size: 106
31253720 GAGATTTATG
* * * * * *
31253730 AGGATATTCGGCTATTTGGTCGAACGAAAAATCGAAACCTAACACGTTAGGGTACGTTTTCTCGA
1 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
* *
31253795 ATTTCCAAACACAAAATATTGCTTTACTTTGAAATTTTAAA
66 ATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAA
* * * * *
31253836 AGGATATTTGGCTATTTGGTCTAACGAGAACTCAAAACCCAGCATGTTAGGACACGTTTCCTCGA
1 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
* *
31253901 ATTTCTAAACGCAAAATATCGCCTTACTTTGAAATTTTAAA
66 ATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAA
* * * *
31253942 AGGATATTTAGCTATTTGGTCGAACAAGAACTCGAAACCCAGCACATTAGGGCACGTTTCCTCGA
1 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
31254007 ATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAA
66 ATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAA
* *
31254048 AGGATATTTGGCTATAATTTGGTCGAACGAGAGAAATCGAAACCCAGCACGTTAGGGCACATTTT
1 AGGATATTTGGC--T-ATTTGGTCGAAC--GAGAAATCGAAACCCAGCACGTTAGGGCACGTTTC
*
31254113 CTCGAATTTCTAAACGCAAAATATTGCCTTA
61 CTCGAATTTCCAAACGCAAAATATTGCCTTA
31254144 TTTTAAAACT
Statistics
Matches: 272, Mismatches: 31, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
106 199 0.73
108 1 0.00
109 12 0.04
111 60 0.22
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (106 bp):
AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
ATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAA
Found at i:31262565 original size:31 final size:31
Alignment explanation
Indices: 31262530--31262592 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
31262520 CCCATAAGAT
31262530 CATTGTTTCACAAACATTAACCATTTTAGAA
1 CATTGTTTCACAAACATTAACCATTTTAGAA
31262561 CATTGTTTCACAAACATTAACCATTTTAGAA
1 CATTGTTTCACAAACATTAACCATTTTAGAA
31262592 C
1 C
31262593 TATCACCGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (31 bp):
CATTGTTTCACAAACATTAACCATTTTAGAA
Found at i:31265965 original size:5 final size:6
Alignment explanation
Indices: 31265942--31265972 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
31265932 GAATGTGAGG
*
31265942 AGAAAG AGAAAA AGAAAA AGAAAA AGAAAA A
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA A
31265973 AACTAGCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:31268849 original size:15 final size:15
Alignment explanation
Indices: 31268829--31268859 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
31268819 ACATGTTCTT
31268829 CATGTTCTTTAGCGG
1 CATGTTCTTTAGCGG
*
31268844 CATGTTTTTTAGCGG
1 CATGTTCTTTAGCGG
31268859 C
1 C
31268860 GTTTTTCCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.19, G:0.26, T:0.42
Consensus pattern (15 bp):
CATGTTCTTTAGCGG
Found at i:31268903 original size:42 final size:41
Alignment explanation
Indices: 31268844--31268949 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 41
31268834 TCTTTAGCGG
* *
31268844 CATGTTTTTTAGCGGCGTTTTTCCTT-AAGTGCCGCTAAAGAA
1 CATGTTCTTTAGCGGCGTTTTT--TTAAAATGCCGCTAAAGAA
31268886 CATGTTCTTTAGCGGCGTTTTTTTACAAATGCCGCTAAAGAA
1 CATGTTCTTTAGCGGCGTTTTTTTA-AAATGCCGCTAAAGAA
* * *
31268928 CATATTCTTTAGTGGCGCTTTT
1 CATGTTCTTTAGCGGCGTTTTT
31268950 ATACAAAAAC
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
40 2 0.04
42 55 0.96
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.40
Consensus pattern (41 bp):
CATGTTCTTTAGCGGCGTTTTTTTAAAATGCCGCTAAAGAA
Found at i:31269034 original size:14 final size:14
Alignment explanation
Indices: 31269015--31269048 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
31269005 GCCCTCCTGT
31269015 AGCAACAATTCAAA
1 AGCAACAATTCAAA
31269029 AGCAACAATTCAAA
1 AGCAACAATTCAAA
31269043 AGCAAC
1 AGCAAC
31269049 CAATAGCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.56, C:0.24, G:0.09, T:0.12
Consensus pattern (14 bp):
AGCAACAATTCAAA
Found at i:31269333 original size:21 final size:21
Alignment explanation
Indices: 31269269--31269335 Score: 89
Period size: 21 Copynumber: 3.2 Consensus size: 21
31269259 GCTCTGCTCC
* *
31269269 GCTTCTCTCGCTGCAGCCTCC
1 GCTTCCCTCGCTGCAGCCTCT
*
31269290 GCTTCCCTCGCTGCAGCCGCT
1 GCTTCCCTCGCTGCAGCCTCT
* *
31269311 GCTTCCCTCGCTTCCGCCTCT
1 GCTTCCCTCGCTGCAGCCTCT
31269332 GCTT
1 GCTT
31269336 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.48, G:0.19, T:0.30
Consensus pattern (21 bp):
GCTTCCCTCGCTGCAGCCTCT
Found at i:31274856 original size:16 final size:17
Alignment explanation
Indices: 31274835--31274913 Score: 65
Period size: 16 Copynumber: 4.6 Consensus size: 17
31274825 TGATATATAT
31274835 TTATGTA-TTAAGTAAA
1 TTATGTAGTTAAGTAAA
* *
31274851 TTATGTAAGTTATGTACA
1 TTATGT-AGTTAAGTAAA
* *
31274869 TGTAT-AAGTTAAGTAAG
1 T-TATGTAGTTAAGTAAA
*
31274886 TTATGTA-TTAAGTAAG
1 TTATGTAGTTAAGTAAA
31274902 TTATGTAAGTTA
1 TTATGT-AGTTA
31274914 TGAAAGTAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
16 24 0.48
17 12 0.24
18 11 0.22
19 3 0.06
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.43
Consensus pattern (17 bp):
TTATGTAGTTAAGTAAA
Found at i:31274863 original size:9 final size:9
Alignment explanation
Indices: 31274846--31275052 Score: 128
Period size: 9 Copynumber: 23.4 Consensus size: 9
31274836 TATGTATTAA
*
31274846 GTAAATTAT
1 GTAAGTTAT
31274855 GTAAGTTAT
1 GTAAGTTAT
31274864 GTACA-TGTA-
1 GTA-AGT-TAT
*
31274873 -TAAGTTAA
1 GTAAGTTAT
31274881 GTAAGTTAT
1 GTAAGTTAT
*
31274890 GT-A-TTAA
1 GTAAGTTAT
31274897 GTAAGTTAT
1 GTAAGTTAT
31274906 GTAAGTTAT
1 GTAAGTTAT
* *
31274915 GAAAGTAAT
1 GTAAGTTAT
* *
31274924 GTATGTAAT
1 GTAAGTTAT
31274933 GTAAG-T-T
1 GTAAGTTAT
31274940 GTAAGTTAT
1 GTAAGTTAT
*
31274949 -TATGTATTAT
1 GTAAG--TTAT
31274959 GTAAGTTAT
1 GTAAGTTAT
31274968 GTAAGTTAAAT
1 GTAAGTT--AT
31274979 GT-A-TTAT
1 GTAAGTTAT
*
31274986 GTAGGTTAT
1 GTAAGTTAT
*
31274995 GTAAGTTGT
1 GTAAGTTAT
**
31275004 GTAAGAGAT
1 GTAAGTTAT
*
31275013 TTAAGTTAT
1 GTAAGTTAT
* *
31275022 ATAGGTTAT
1 GTAAGTTAT
* *
31275031 TTAGGTTAT
1 GTAAGTTAT
*
31275040 GTAAGTTTT
1 GTAAGTTAT
31275049 GTAA
1 GTAA
31275053 TGTGCAAGTG
Statistics
Matches: 155, Mismatches: 27, Indels: 32
0.72 0.13 0.15
Matches are distributed among these distances:
7 18 0.12
8 9 0.06
9 113 0.73
10 8 0.05
11 7 0.05
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.43
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:31274865 original size:25 final size:25
Alignment explanation
Indices: 31274835--31274915 Score: 101
Period size: 25 Copynumber: 3.2 Consensus size: 25
31274825 TGATATATAT
31274835 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
* * *
31274860 TTATGTA-CATGTATAAGTTAAGTAAG
1 TTATGTATTAAGTA-AA-TTATGTAAG
*
31274886 TTATGTATTAAGTAAGTTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
31274911 TTATG
1 TTATG
31274916 AAAGTAATGT
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
24 4 0.09
25 22 0.48
26 16 0.35
27 4 0.09
ACGTcount: A:0.37, C:0.01, G:0.19, T:0.43
Consensus pattern (25 bp):
TTATGTATTAAGTAAATTATGTAAG
Found at i:31274928 original size:22 final size:24
Alignment explanation
Indices: 31274835--31275006 Score: 98
Period size: 25 Copynumber: 7.3 Consensus size: 24
31274825 TGATATATAT
*
31274835 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTA-TAAGTAAGTTATGTAAG
* * *
31274860 TTATGTACATGTATAAGTTAAGTAAG
1 TTATGTATAAG--TAAGTTATGTAAG
31274886 TTATGTATTAAGTAAGTTATGTAAG
1 TTATGTA-TAAGTAAGTTATGTAAG
31274911 TTATG-A-AAGTAA-TGTATGTAA-
1 TTATGTATAAGTAAGT-TATGTAAG
* *
31274932 TGTAAGT-T--GTAAGTTAT-TATG
1 T-TATGTATAAGTAAGTTATGTAAG
31274953 -TAT-TAT--GTAAGTTATGTAAG
1 TTATGTATAAGTAAGTTATGTAAG
* *
31274973 TTAAATGTATTATGTAGGTTATGTAAG
1 TT--ATGTA-TAAGTAAGTTATGTAAG
*
31275000 TTGTGTA
1 TTATGTA
31275007 AGAGATTTAA
Statistics
Matches: 116, Mismatches: 13, Indels: 36
0.70 0.08 0.22
Matches are distributed among these distances:
18 1 0.01
19 12 0.10
20 5 0.04
21 10 0.09
22 17 0.15
23 2 0.02
24 5 0.04
25 29 0.25
26 18 0.16
27 17 0.15
ACGTcount: A:0.35, C:0.01, G:0.20, T:0.44
Consensus pattern (24 bp):
TTATGTATAAGTAAGTTATGTAAG
Found at i:31274988 original size:62 final size:61
Alignment explanation
Indices: 31274886--31275003 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 61
31274876 GTTAAGTAAG
*
31274886 TTATGTATTAAGTAAGTTATGTAAGTTATGAAAGTAATGTATGTAATGTAAGTTGTAAGTTA
1 TTATGTATTAAGTAAGTTATGTAAGTTA-GAAAGTAATGTAGGTAATGTAAGTTGTAAGTTA
* * *
31274948 TTATGTATTATGTAAGTTATGTAAGTTA-AATGTATTATGTAGGTTATGTAAGTTGT
1 TTATGTATTAAGTAAGTTATGTAAGTTAGAAAGTA--ATGTAGGTAATGTAAGTTGT
31275004 GTAAGAGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
60 5 0.10
62 45 0.90
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (61 bp):
TTATGTATTAAGTAAGTTATGTAAGTTAGAAAGTAATGTAGGTAATGTAAGTTGTAAGTTA
Found at i:31277877 original size:83 final size:84
Alignment explanation
Indices: 31277783--31277950 Score: 284
Period size: 83 Copynumber: 2.0 Consensus size: 84
31277773 AAATCTTACA
* *
31277783 AATTTCATTTCATGAAACGGCTCCGTTTTATTCAATTTTCCAAATATTGTTTGCGGCGTTT-TTG
1 AATTTCATTTCATGAAACGGCTCCGTTTTATTCAATTTTCCAAATATTATTTGCGGCGTTTGTTA
* *
31277847 TAAAAAACTCCACTAAATT
66 CAAAAAACGCCACTAAATT
*
31277866 AATTTCATTTCATGAAACGGCTCCGTTTTATTCAATTTTTCAAATATTATTTGCGGCGTTTGTTA
1 AATTTCATTTCATGAAACGGCTCCGTTTTATTCAATTTTCCAAATATTATTTGCGGCGTTTGTTA
31277931 CAAAAAACGCCACTAAATT
66 CAAAAAACGCCACTAAATT
31277950 A
1 A
31277951 TTTATATTTA
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
83 59 0.75
84 20 0.25
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (84 bp):
AATTTCATTTCATGAAACGGCTCCGTTTTATTCAATTTTCCAAATATTATTTGCGGCGTTTGTTA
CAAAAAACGCCACTAAATT
Found at i:31278022 original size:408 final size:407
Alignment explanation
Indices: 31277459--31278274 Score: 1517
Period size: 408 Copynumber: 2.0 Consensus size: 407
31277449 AAATCTTACA
31277459 AATTTCAATTCATGAAACGGCTCCGTTTTATTCAATTTTCCAAATATTATTTGCGGCGTTTGTTA
1 AATTTCAATTCATGAAACGGCTCCGTTTTATTCAATTTTCCAAATATTATTTGCGGCGTTTGTTA
31277524 CAAAAACGCCACTAAATTATTTATATTTATTTATAAGTAATTGCGGATATTATTCATATTTGCGG
66 CAAAAACGCCACTAAATTATTTATATTTATTTATAAGTAATTGCGGATATTATTCATATTTGCGG
31277589 CGTTTTAGTATAAAACGCCACTAAAATTTCATGTACAGAAACAAACGGTGCCGTTTTATTAAAAC
131 CGTTTTAGTATAAAACGCCACTAAAATTTCATGTACAGAAACAAACGGTGCCGTTTTATTAAAAC
31277654 ATTATTCAAATAATGTATTACAATTTTAAATTTATGCTATATTTTTAAGTTAAATTGGGTTGATG
196 ATTATTCAAATAATGTATTACAATTTTAAATTTATGCTATATTTTTAAGTTAAATTGGGTTGATG
31277719 GAGATATGCCGGTGTAATTTCATTTCATGTAGCGGCGCTTAAAGAAAACGCCACAAATCTTACAA
261 GAGATATGCCGGTGTAATTTCATTTCATGTAGCGGCGCTTAAAGAAAACGCCACAAATCTTACAA
* * *
31277784 ATTTCATTTCATGAAACGGCTCCGTTTTATTCAATTTTCCAAATATTGTTTGCGGCGTTTTTGTA
326 ATTTCATTTCATGAAACGGCTCCGTTTTATTCAATTTTCCAAATACTATTTGCGGCG-TTTTATA
*
31277849 -AAAAACTCCACTAAATT
390 CAAAAACGCCACTAAATT
* *
31277866 AATTTCATTTCATGAAACGGCTCCGTTTTATTCAATTTTTCAAATATTATTTGCGGCGTTTGTTA
1 AATTTCAATTCATGAAACGGCTCCGTTTTATTCAATTTTCCAAATATTATTTGCGGCGTTTGTTA
31277931 CAAAAAACGCCACTAAATTATTTATATTTATTTATAAGTAATTGCGGATATTATTCATATTTGCG
66 C-AAAAACGCCACTAAATTATTTATATTTATTTATAAGTAATTGCGGATATTATTCATATTTGCG
31277996 GCGTTTTAGTATAAAACGCCACTAAAATTTCATGTACAGAAACAAACGGTGCCGTTTTATTAAAA
130 GCGTTTTAGTATAAAACGCCACTAAAATTTCATGTACAGAAACAAACGGTGCCGTTTTATTAAAA
31278061 CATTATTCAAATAATGTATTACAATTTTAAATTTATGCTATATTTTTAAGTTAAATTGGGTTGAT
195 CATTATTCAAATAATGTATTACAATTTTAAATTTATGCTATATTTTTAAGTTAAATTGGGTTGAT
* *
31278126 GGAGATATGCCGGTGTAATTTCATTTCATGTAGCGGGGCTTAAAGAAAATGCCACAAATCTTACA
260 GGAGATATGCCGGTGTAATTTCATTTCATGTAGCGGCGCTTAAAGAAAACGCCACAAATCTTACA
* *
31278191 AATTTCATTTCATTAAACGGCTCCGTTTTATTCAATTTTTCAAATACTATTTGCGGCGTTTTATA
325 AATTTCATTTCATGAAACGGCTCCGTTTTATTCAATTTTCCAAATACTATTTGCGGCGTTTTATA
31278256 CAAAAACGCCACTAAATT
390 CAAAAACGCCACTAAATT
31278274 A
1 A
31278275 TTTATATTTA
Statistics
Matches: 397, Mismatches: 10, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
407 70 0.18
408 327 0.82
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (407 bp):
AATTTCAATTCATGAAACGGCTCCGTTTTATTCAATTTTCCAAATATTATTTGCGGCGTTTGTTA
CAAAAACGCCACTAAATTATTTATATTTATTTATAAGTAATTGCGGATATTATTCATATTTGCGG
CGTTTTAGTATAAAACGCCACTAAAATTTCATGTACAGAAACAAACGGTGCCGTTTTATTAAAAC
ATTATTCAAATAATGTATTACAATTTTAAATTTATGCTATATTTTTAAGTTAAATTGGGTTGATG
GAGATATGCCGGTGTAATTTCATTTCATGTAGCGGCGCTTAAAGAAAACGCCACAAATCTTACAA
ATTTCATTTCATGAAACGGCTCCGTTTTATTCAATTTTCCAAATACTATTTGCGGCGTTTTATAC
AAAAACGCCACTAAATT
Found at i:31278732 original size:39 final size:40
Alignment explanation
Indices: 31278658--31278734 Score: 104
Period size: 39 Copynumber: 1.9 Consensus size: 40
31278648 ACCCATAACC
**
31278658 CCTAAATCCCCCTTAACCCTTAAAGCATAAACCCTAAACT
1 CCTAAATCCCCCTTAACCCCAAAAGCATAAACCCTAAACT
*
31278698 CCTAAATCTCCC-TAACCCCAAAAGCA-AAACCCCTAAA
1 CCTAAATCCCCCTTAACCCCAAAAGCATAAA-CCCTAAA
31278735 AAATTTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
38 3 0.09
39 19 0.58
40 11 0.33
ACGTcount: A:0.40, C:0.39, G:0.03, T:0.18
Consensus pattern (40 bp):
CCTAAATCCCCCTTAACCCCAAAAGCATAAACCCTAAACT
Found at i:31278909 original size:15 final size:16
Alignment explanation
Indices: 31278884--31278915 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
31278874 TTAAATAATA
31278884 TAAACTATATTAAATT
1 TAAACTATATTAAATT
31278900 TAAA-TATATTAAATT
1 TAAACTATATTAAATT
31278915 T
1 T
31278916 CTTATTAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
TAAACTATATTAAATT
Found at i:31279020 original size:15 final size:14
Alignment explanation
Indices: 31278996--31279036 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
31278986 CTTTATCGTT
31278996 CAAACTCTAAACCC
1 CAAACTCTAAACCC
31279010 CAAATCTCTAAACCC
1 CAAA-CTCTAAACCC
*
31279025 CTAAACCCTAAA
1 C-AAACTCTAAA
31279037 TCTCTAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 17 0.71
16 3 0.12
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.17
Consensus pattern (14 bp):
CAAACTCTAAACCC
Found at i:31279028 original size:23 final size:23
Alignment explanation
Indices: 31279002--31279052 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
31278992 CGTTCAAACT
31279002 CTAAACCCCAAATCTCTAAACCC
1 CTAAACCCCAAATCTCTAAACCC
* *
31279025 CTAAACCCTAAATCTCTAAATCC
1 CTAAACCCCAAATCTCTAAACCC
31279048 CTAAA
1 CTAAA
31279053 TCCCTCTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (23 bp):
CTAAACCCCAAATCTCTAAACCC
Found at i:31279030 original size:8 final size:8
Alignment explanation
Indices: 31279002--31279057 Score: 62
Period size: 8 Copynumber: 7.2 Consensus size: 8
31278992 CGTTCAAACT
31279002 CTAAA-CC
1 CTAAATCC
* *
31279009 CCAAATCT
1 CTAAATCC
*
31279017 CTAAACCC
1 CTAAATCC
31279025 CTAAA-CC
1 CTAAATCC
*
31279032 CTAAATCT
1 CTAAATCC
31279040 CTAAATCC
1 CTAAATCC
31279048 CTAAATCC
1 CTAAATCC
31279056 CT
1 CT
31279058 CTAACCCCAA
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
7 11 0.28
8 29 0.73
ACGTcount: A:0.38, C:0.39, G:0.00, T:0.23
Consensus pattern (8 bp):
CTAAATCC
Found at i:31279105 original size:14 final size:13
Alignment explanation
Indices: 31279088--31279121 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
31279078 TCTAAACCCT
31279088 AAACCCTAAATCTC
1 AAACCCTAAAT-TC
31279102 AAACCCTAAATTC
1 AAACCCTAAATTC
*
31279115 ATACCCT
1 AAACCCT
31279122 GACCTACTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (13 bp):
AAACCCTAAATTC
Found at i:31279563 original size:113 final size:108
Alignment explanation
Indices: 31279398--31279768 Score: 367
Period size: 113 Copynumber: 3.3 Consensus size: 108
31279388 AATTGGGCTT
* * * *
31279398 AGGTTTTTAGCGGCGCTTTTACAAAAAACGCCGCTAAAAACCTGAGCATTAGCGGCGCTTTATAT
1 AGGTTTTTTGCGGCGC-TTTCCCAGAAACGCCGCTAAAAACCTGAGCATTAGCGGCGCTTTATAT
* * * *
31279463 AAAGCGCCACTAAATCCCTGAAAGCTGGCGAGACGACGTCGTTGCGCC
65 AAAACGCCGCTAAATCCC--AAAGCT--CGAAACGGCGTCGTTGCGCC
* *
31279511 AGATTTTTTGCGGCGCTTTCCCAGAAACGCCGCTAAAAGACATGAGCATTAGCGGCGCTTTCATA
1 AGGTTTTTTGCGGCGCTTTCCCAGAAACGCCGCTAAAA-ACCTGAGCATTAGCGGCGCTTT-ATA
*
31279576 -AAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGACGTTG-GCC
64 TAAAACGCCGCTAAAT-CCC-AAAGCTC-G-AAACGGCGTCGTTGCGCC
* * *
31279623 TTAGGTTTTTAGCGGCGC-TTCCTTAAAAACGCCGCTAAAAACCTGAGCATTAGCGGCGC-TTAC
1 --AGGTTTTTTGCGGCGCTTTCC-CAGAAACGCCGCTAAAAACCTGAGCATTAGCGGCGCTTTA-
* *
31279686 T-TAAAAACGCCGCTAAATCACCAAATGCTCTTGAAACGGCGTCGTTGCACT
62 TAT-AAAACGCCGCTAAATC-CCAAA-GCTC--GAAACGGCGTCGTTGCGCC
31279737 AGGTTTTTTGCGGCGCTTTCCC-GAAAACGCCG
1 AGGTTTTTTGCGGCGCTTTCCCAG-AAACGCCG
31279769 GTAATGTTTA
Statistics
Matches: 217, Mismatches: 24, Indels: 35
0.79 0.09 0.13
Matches are distributed among these distances:
111 2 0.01
112 53 0.24
113 125 0.58
114 37 0.17
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (108 bp):
AGGTTTTTTGCGGCGCTTTCCCAGAAACGCCGCTAAAAACCTGAGCATTAGCGGCGCTTTATATA
AAACGCCGCTAAATCCCAAAGCTCGAAACGGCGTCGTTGCGCC
Found at i:31279731 original size:226 final size:216
Alignment explanation
Indices: 31279338--31279768 Score: 521
Period size: 226 Copynumber: 1.9 Consensus size: 216
31279328 AATCCCTGAT
** * *
31279338 CATTAGCGGCGCTTTTTTAAAAACGCCGCTAAAACCCCTAAAGCTAAGAAAATTGGGCTTAGGTT
1 CATTAGCGGCGCTTTCATAAAAACGCCGCTAAAACCCCAAAAGCTAAGAAAATTGGCCTTAGGTT
*
31279403 TTTAGCGGCGCTTTTACAAAAAACGCCGCTAAAAACCTGAGCATTAGCGGCGCTTTATATAAAGC
66 TTTAGCGGCGCTTTT--AAAAAACGCCGCTAAAAACCTGAGCATTAGCGGCGCTTTATATAAAAC
* * *
31279468 GCCACTAAATCCCTGAAAGCTGGCGAGACGACGTCGTTGCGCCAGATTTTTTGCGGCGCTTTCCC
129 GCCACTAAATCCC-GAAAGCTCGCGAAACGACGTCGTTGCACCAGATTTTTTGCGGCGCTTTCCC
31279533 -AGAAACGCCGCTAAAAGACATGAG
193 GA-AAACGCCGCTAAAAGACATGAG
* *
31279557 CATTAGCGGCGCTTTCATAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGACGTTGGC
1 CATTAGCGGCGCTTTCATAAAAACGCCGCTAAAACCCCAAAAGCTAAG-AAA-----A--TTGGC
31279622 CTTAGGTTTTTAGCGGCGCTTCCTT-AAAAACGCCGCTAAAAACCTGAGCATTAGCGGCGC-TTA
58 CTTAGGTTTTTAGCGGCGCTT--TTAAAAAACGCCGCTAAAAACCTGAGCATTAGCGGCGCTTTA
* ** * * *
31279685 CT-TAAAAACGCCGCTAAATCACC-AAATGCTCTTGAAACGGCGTCGTTGCACTAGGTTTTTTGC
121 -TAT-AAAACGCCACTAAATC-CCGAAA-GCTCGCGAAACGACGTCGTTGCACCAGATTTTTTGC
31279748 GGCGCTTTCCCGAAAACGCCG
182 GGCGCTTTCCCGAAAACGCCG
31279769 GTAATGTTTA
Statistics
Matches: 181, Mismatches: 16, Indels: 23
0.82 0.07 0.10
Matches are distributed among these distances:
219 43 0.24
220 3 0.02
225 8 0.04
226 97 0.54
227 28 0.15
229 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (216 bp):
CATTAGCGGCGCTTTCATAAAAACGCCGCTAAAACCCCAAAAGCTAAGAAAATTGGCCTTAGGTT
TTTAGCGGCGCTTTTAAAAAACGCCGCTAAAAACCTGAGCATTAGCGGCGCTTTATATAAAACGC
CACTAAATCCCGAAAGCTCGCGAAACGACGTCGTTGCACCAGATTTTTTGCGGCGCTTTCCCGAA
AACGCCGCTAAAAGACATGAG
Found at i:31291652 original size:28 final size:27
Alignment explanation
Indices: 31291604--31291657 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
31291594 AAGTAAAAGG
31291604 ATTAAATTTTAAAATTATAAATAAATAA
1 ATTAAATTTTAAAATTATAAA-AAATAA
*
31291632 ATTAAATTTT-AAATGTGTAAAAAATA
1 ATTAAATTTTAAAAT-TATAAAAAATA
31291658 TAGAGACGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (27 bp):
ATTAAATTTTAAAATTATAAAAAATAA
Found at i:31292078 original size:51 final size:51
Alignment explanation
Indices: 31292017--31292170 Score: 283
Period size: 51 Copynumber: 3.0 Consensus size: 51
31292007 AAATTAAAAG
31292017 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
*
31292068 ATTATACATACACCAACAATGTTTTTTACGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
31292119 ATTATACATACACCAACAATGTTTTTTAGGG-ACAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTA-AATAACATTAAACCAACA
31292170 A
1 A
31292171 GTAATTTTAG
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
50 1 0.01
51 99 0.99
ACGTcount: A:0.45, C:0.19, G:0.07, T:0.29
Consensus pattern (51 bp):
ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
Found at i:31292179 original size:33 final size:34
Alignment explanation
Indices: 31292116--31292226 Score: 115
Period size: 33 Copynumber: 3.4 Consensus size: 34
31292106 CATTAAACCA
* *
31292116 ACAATTATACATACACCAACAATGT-TTTTTAGGG
1 ACAATTATACATAAACCAACAA-GTAATTTTAGGG
31292150 ACAA-TA-ACATTAAACCAACAAGTAATTTTA-GG
1 ACAATTATACA-TAAACCAACAAGTAATTTTAGGG
* * *
31292182 TCAATTATACATACACCAACAATTAATTTTA-GG
1 ACAATTATACATAAACCAACAAGTAATTTTAGGG
*
31292215 TCAATTATACAT
1 ACAATTATACAT
31292227 GCTTTATAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
32 10 0.15
33 51 0.75
34 7 0.10
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (34 bp):
ACAATTATACATAAACCAACAAGTAATTTTAGGG
Found at i:31292478 original size:18 final size:18
Alignment explanation
Indices: 31292450--31292498 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 18
31292440 AATTATAAGA
31292450 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
31292467 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
31292483 A-TTTAATTATAATTAT
1 ATTTTAATTA-AATTAT
31292499 GTTTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 5 0.18
18 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:31292484 original size:16 final size:16
Alignment explanation
Indices: 31292450--31292504 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
31292440 AATTATAAGA
31292450 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
31292467 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
31292483 A-TTTAATTATAAT-T
1 ATTTTAATTAAAATAT
31292497 ATGTTTAA
1 AT-TTTAA
31292505 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:31292741 original size:16 final size:16
Alignment explanation
Indices: 31292720--31292787 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
31292710 GATTAGCTAT
31292720 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
31292736 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
31292752 TACACATCTAATCCAA
1 TACACCTCTAATCCAA
31292768 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
31292784 TACA
1 TACA
31292788 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.40, C:0.35, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:31299622 original size:14 final size:14
Alignment explanation
Indices: 31299603--31299629 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
31299593 AAATAAATAA
31299603 TACATAAAATAATG
1 TACATAAAATAATG
31299617 TACATAAAATAAT
1 TACATAAAATAAT
31299630 TTAAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (14 bp):
TACATAAAATAATG
Found at i:31302867 original size:18 final size:18
Alignment explanation
Indices: 31302827--31302869 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
31302817 GTTCAAGGTG
31302827 TAATTAATTTAAAATTTT
1 TAATTAATTTAAAATTTT
* *
31302845 CAATTAA-TTAAATTTATT
1 TAATTAATTTAAAATT-TT
31302863 TAATTAA
1 TAATTAA
31302870 AAATCTATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATTAATTTAAAATTTT
Found at i:31314051 original size:49 final size:49
Alignment explanation
Indices: 31313989--31314094 Score: 205
Period size: 49 Copynumber: 2.2 Consensus size: 49
31313979 GAAATTTTTC
31313989 TGGCAG-AGTGAGTTTTCAAAGGAAAGCTAGGCAAATATAAAGGTGCTT
1 TGGCAGTAGTGAGTTTTCAAAGGAAAGCTAGGCAAATATAAAGGTGCTT
31314037 TGGCAGTAGTGAGTTTTCAAAGGAAAGCTAGGCAAATATAAAGGTGCTT
1 TGGCAGTAGTGAGTTTTCAAAGGAAAGCTAGGCAAATATAAAGGTGCTT
31314086 TGGCAGTAG
1 TGGCAGTAG
31314095 AGGTTCTGGA
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 6 0.11
49 51 0.89
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.25
Consensus pattern (49 bp):
TGGCAGTAGTGAGTTTTCAAAGGAAAGCTAGGCAAATATAAAGGTGCTT
Found at i:31322784 original size:5 final size:5
Alignment explanation
Indices: 31322774--31322824 Score: 57
Period size: 5 Copynumber: 9.8 Consensus size: 5
31322764 ACTTACTAAG
* * *
31322774 AAAAT AAAAT AAAAT AAAACCT AAATT AAAAC AAAAC AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAA--T AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
31322825 CTTAATCTAC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
5 36 0.90
7 4 0.10
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:31322829 original size:27 final size:26
Alignment explanation
Indices: 31322774--31322823 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
31322764 ACTTACTAAG
* *
31322774 AAAATAAAATAAAATAAAACCTAAATT
1 AAAACAAAACAAAATAAAA-CTAAATT
31322801 AAAACAAAACAAAATAAAA-TAAA
1 AAAACAAAACAAAATAAAACTAAA
31322824 ACTTAATCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.19
27 17 0.81
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (26 bp):
AAAACAAAACAAAATAAAACTAAATT
Found at i:31325503 original size:26 final size:25
Alignment explanation
Indices: 31325450--31325505 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
31325440 TAATTTTAAA
* * *
31325450 TTATTTTTAAAATATTTTTTATTTT
1 TTATTTTTAAAATAATTTTTAGTGT
*
31325475 TTATTTTTAAAATAAATTTTTGGTGT
1 TTATTTTTAAAAT-AATTTTTAGTGT
31325501 TTATT
1 TTATT
31325506 AAAAAAATAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (25 bp):
TTATTTTTAAAATAATTTTTAGTGT
Found at i:31330568 original size:74 final size:74
Alignment explanation
Indices: 31330442--31330586 Score: 245
Period size: 74 Copynumber: 2.0 Consensus size: 74
31330432 TCATGAAATA
* *
31330442 CAGGATTTTATGCAATATGCAAAGCAGATTGACTATCACAAAATAAAGGAATAGCTTTAGGATGA
1 CAGGATTCTATGCAATATGCAAAGCAGATTGACTATCACAAAATAAAGGAATAGATTTAGGATGA
*
31330507 TGAACAGGG
66 AGAACAGGG
* *
31330516 CAGGATTCTATGCAATATGCAAAGCAGATTGACTGTCACAAAATAAATGAATAGATTTAGGATGA
1 CAGGATTCTATGCAATATGCAAAGCAGATTGACTATCACAAAATAAAGGAATAGATTTAGGATGA
31330581 AGAACA
66 AGAACA
31330587 CCTAAGCTCA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 66 1.00
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.24
Consensus pattern (74 bp):
CAGGATTCTATGCAATATGCAAAGCAGATTGACTATCACAAAATAAAGGAATAGATTTAGGATGA
AGAACAGGG
Found at i:31336077 original size:19 final size:19
Alignment explanation
Indices: 31336041--31336092 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
31336031 CTTTAATCAT
*
31336041 TTTAACTT-ATATATTTAA-
1 TTTAACTTAAT-TAATTAAG
31336059 TTTAAACTTAATTAATTAAG
1 TTT-AACTTAATTAATTAAG
*
31336079 TTTAATTTAATTAA
1 TTTAACTTAATTAA
31336093 CCATTAACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 3 0.10
19 21 0.72
20 5 0.17
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (19 bp):
TTTAACTTAATTAATTAAG
Found at i:31349032 original size:18 final size:18
Alignment explanation
Indices: 31348990--31349035 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
31348980 CTTTCTATAT
* **
31348990 ATATGTATATTTATTTTT
1 ATATATATATTTATTTCC
*
31349008 ATGTATATATTTATTTCC
1 ATATATATATTTATTTCC
31349026 ATATATATAT
1 ATATATATAT
31349036 ACGCATATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (18 bp):
ATATATATATTTATTTCC
Found at i:31351727 original size:3 final size:3
Alignment explanation
Indices: 31351708--31351768 Score: 50
Period size: 3 Copynumber: 20.3 Consensus size: 3
31351698 TAACCATTGT
* * * * * *
31351708 CAC CGC CAC CGC CAC CAC CAC CTC CTC CTC CAC CAC CAC CAC CTC CAC
1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC
* *
31351756 CTC CAC CTC CAC C
1 CAC CAC CAC CAC C
31351769 TCTACCTCTA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.20, C:0.67, G:0.03, T:0.10
Consensus pattern (3 bp):
CAC
Found at i:31351737 original size:6 final size:6
Alignment explanation
Indices: 31351708--31351786 Score: 65
Period size: 6 Copynumber: 13.7 Consensus size: 6
31351698 TAACCATTGT
* * * * *
31351708 CACCGC CACCGC CACCAC CACCTC CTCCTC CA---C CACCAC CACCTC
1 CACCTC CACCTC CACCTC CACCTC CACCTC CACCTC CACCTC CACCTC
* * *
31351753 CACCTC CACCTC CACCTC TACCTC TACCGC CACC
1 CACCTC CACCTC CACCTC CACCTC CACCTC CACC
31351787 ACTTCCGTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
3 3 0.05
6 59 0.95
ACGTcount: A:0.19, C:0.65, G:0.04, T:0.13
Consensus pattern (6 bp):
CACCTC
Found at i:31351740 original size:15 final size:15
Alignment explanation
Indices: 31351708--31351768 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 15
31351698 TAACCATTGT
* *
31351708 CACCGCCACCGCCAC
1 CACCACCACCTCCAC
* *
31351723 CACCACCTCCTCCTC
1 CACCACCACCTCCAC
* *
31351738 CACCACCACCACCTC
1 CACCACCACCTCCAC
*
31351753 CACCTCCACCTCCAC
1 CACCACCACCTCCAC
31351768 C
1 C
31351769 TCTACCTCTA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.20, C:0.67, G:0.03, T:0.10
Consensus pattern (15 bp):
CACCACCACCTCCAC
Found at i:31351743 original size:21 final size:21
Alignment explanation
Indices: 31351719--31351768 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
31351709 ACCGCCACCG
*
31351719 CCACCACCACCTCCTCCTCCA
1 CCACCACCACCTCCACCTCCA
31351740 CCACCACCACCTCCACCTCCA
1 CCACCACCACCTCCACCTCCA
*
31351761 CCTCCACC
1 CCACCACC
31351769 TCTACCTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.20, C:0.68, G:0.00, T:0.12
Consensus pattern (21 bp):
CCACCACCACCTCCACCTCCA
Found at i:31351850 original size:15 final size:15
Alignment explanation
Indices: 31351832--31351894 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 15
31351822 CTGAGCCATG
*
31351832 TCCACCTCCACTACC
1 TCCACCTCCACCACC
*
31351847 TCCACCTCCGCCACC
1 TCCACCTCCACCACC
* * *
31351862 TCCTCCTCCTCTACC
1 TCCACCTCCACCACC
* *
31351877 ACCGCCTCCACCACC
1 TCCACCTCCACCACC
31351892 TCC
1 TCC
31351895 TACACCATTC
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.14, C:0.63, G:0.03, T:0.19
Consensus pattern (15 bp):
TCCACCTCCACCACC
Found at i:31351870 original size:30 final size:30
Alignment explanation
Indices: 31351836--31351895 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
31351826 GCCATGTCCA
* *
31351836 CCTCCACTACCTCCACCTCCGCCACCTCCT
1 CCTCCACTACCACCACCTCCACCACCTCCT
* *
31351866 CCTCCTCTACCACCGCCTCCACCACCTCCT
1 CCTCCACTACCACCACCTCCACCACCTCCT
31351896 ACACCATTCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.13, C:0.63, G:0.03, T:0.20
Consensus pattern (30 bp):
CCTCCACTACCACCACCTCCACCACCTCCT
Found at i:31351872 original size:9 final size:9
Alignment explanation
Indices: 31351836--31351894 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
31351826 GCCATGTCCA
31351836 CCTCCA-CT
1 CCTCCACCT
31351844 ACCTCCACCT
1 -CCTCCACCT
*
31351854 CCGCCACCT
1 CCTCCACCT
*
31351863 CCTCCTCCT
1 CCTCCACCT
*
31351872 -CTACCACCG
1 CCT-CCACCT
*
31351881 CCTCCACCA
1 CCTCCACCT
31351890 CCTCC
1 CCTCC
31351895 TACACCATTC
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
8 2 0.05
9 35 0.85
10 4 0.10
ACGTcount: A:0.14, C:0.64, G:0.03, T:0.19
Consensus pattern (9 bp):
CCTCCACCT
Found at i:31351935 original size:12 final size:12
Alignment explanation
Indices: 31351904--31351945 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
31351894 CTACACCATT
*
31351904 CCCATACCCAGA
1 CCCATATCCAGA
* *
31351916 CCCGTATCCGGA
1 CCCATATCCAGA
31351928 CCCATATCCAGA
1 CCCATATCCAGA
31351940 CCCATA
1 CCCATA
31351946 CCCTTGGCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.29, C:0.45, G:0.12, T:0.14
Consensus pattern (12 bp):
CCCATATCCAGA
Found at i:31351995 original size:21 final size:21
Alignment explanation
Indices: 31351966--31352006 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
31351956 GAACTAGAGC
* *
31351966 CACCTCCACCTCCTCCTCCTT
1 CACCACCACCACCTCCTCCTT
31351987 CACCACCACCACCTCCTCCT
1 CACCACCACCACCTCCTCCT
31352007 CCTCTACCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.63, G:0.00, T:0.22
Consensus pattern (21 bp):
CACCACCACCACCTCCTCCTT
Found at i:31352072 original size:24 final size:24
Alignment explanation
Indices: 31352045--31352091 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
31352035 CGGAACCCCT
*
31352045 TCCAGAACCAT-ACCCTAAACCATA
1 TCCAGAACC-TGACCCCAAACCATA
31352069 TCCAGAACCTGACCCCAAACCAT
1 TCCAGAACCTGACCCCAAACCAT
31352092 TAGCAACACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.40, G:0.06, T:0.15
Consensus pattern (24 bp):
TCCAGAACCTGACCCCAAACCATA
Found at i:31352996 original size:19 final size:19
Alignment explanation
Indices: 31352972--31353015 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
31352962 TTTCCTCCAA
*
31352972 CTTAGATATGATATGCAAT
1 CTTAGATATGATATACAAT
*
31352991 CTTAGATATGATATATAAT
1 CTTAGATATGATATACAAT
31353010 CTTAGA
1 CTTAGA
31353016 AGATATGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (19 bp):
CTTAGATATGATATACAAT
Found at i:31353022 original size:22 final size:23
Alignment explanation
Indices: 31352994--31353038 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
31352984 ATGCAATCTT
31352994 AGATATGA-TATATAATCTTAGA
1 AGATATGATTATATAATCTTAGA
* *
31353016 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATATAATCTTAGA
31353039 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (23 bp):
AGATATGATTATATAATCTTAGA
Found at i:31353048 original size:22 final size:23
Alignment explanation
Indices: 31353006--31353048 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
31352996 ATATGATATA
*
31353006 TAATCTTAGAAGATATGATTTTG
1 TAATCTTAGAAGATATAATTTTG
*
31353029 TAATCTTAG-AGATTTAATTT
1 TAATCTTAGAAGATATAATTT
31353049 GTAGATACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.47
Consensus pattern (23 bp):
TAATCTTAGAAGATATAATTTTG
Found at i:31359541 original size:19 final size:19
Alignment explanation
Indices: 31359519--31359600 Score: 64
Period size: 19 Copynumber: 4.3 Consensus size: 19
31359509 TTTTTTAACA
31359519 ATTTTATATTAATTTTAAT
1 ATTTTATATTAATTTTAAT
*
31359538 ATTTTTTATT--TTTT-AT
1 ATTTTATATTAATTTTAAT
*
31359554 GATTTT-TATAGAATTTTAAT
1 -ATTTTATAT-TAATTTTAAT
* *
31359574 ATGTTTTTATAAATTTTAAAT
1 AT-TTTATATTAATTTT-AAT
31359595 ATTTTA
1 ATTTTA
31359601 AGTATGTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
16 5 0.10
17 9 0.18
19 15 0.29
20 14 0.27
21 8 0.16
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (19 bp):
ATTTTATATTAATTTTAAT
Found at i:31359581 original size:30 final size:30
Alignment explanation
Indices: 31359566--31359630 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
31359556 TTTTTATAGA
31359566 ATTTTAA-TATGTTTTTATAAATTTTAAAT
1 ATTTTAAGTATGTTTTTATAAATTTTAAAT
*
31359595 ATTTTAAGTATG-TTTTATTAATTTTATAAT
1 ATTTTAAGTATGTTTTTATAAATTTTA-AAT
*
31359625 TTTTTA
1 ATTTTA
31359631 TAATTTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 20 0.62
30 12 0.38
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.62
Consensus pattern (30 bp):
ATTTTAAGTATGTTTTTATAAATTTTAAAT
Found at i:31362024 original size:2 final size:2
Alignment explanation
Indices: 31362017--31362056 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
31362007 TAGATTGTTG
* *
31362017 TA TA TA TA TA TT TA TA TT TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
31362057 TTTGTTGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (2 bp):
TA
Found at i:31364075 original size:62 final size:62
Alignment explanation
Indices: 31363972--31364096 Score: 196
Period size: 62 Copynumber: 2.0 Consensus size: 62
31363962 TCTTTTTTTT
* *
31363972 GCATTCATGCATCAACATTACATTTCATCGCATGCAATAAATTTCCTAAAATCCAAAAATAC
1 GCATTCATGCATCAACACTACATTTCATCGCATACAATAAATTTCCTAAAATCCAAAAATAC
* * * *
31364034 GCATTCATGCATCAACACTACGTTTCATTGCATACAGTAAATTTCCTAAAATCCAAAAGTAC
1 GCATTCATGCATCAACACTACATTTCATCGCATACAATAAATTTCCTAAAATCCAAAAATAC
31364096 G
1 G
31364097 TCGAGTTTAG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (62 bp):
GCATTCATGCATCAACACTACATTTCATCGCATACAATAAATTTCCTAAAATCCAAAAATAC
Found at i:31365355 original size:11 final size:11
Alignment explanation
Indices: 31365338--31365409 Score: 60
Period size: 12 Copynumber: 6.4 Consensus size: 11
31365328 AGTGGAGGCA
31365338 AAAAAAAAGGAC
1 AAAAAAAA-GAC
31365350 AAAAAAAAGAC
1 AAAAAAAAGAC
31365361 AAAAAAAAAGGTA-
1 -AAAAAAAA-G-AC
*
31365374 AAAAAAAACGAG
1 AAAAAAAA-GAC
31365386 AAAAAAAA-AC
1 AAAAAAAAGAC
*
31365396 AAATAAAAGA-
1 AAAAAAAAGAC
31365406 AAAA
1 AAAA
31365410 CCTCTACTGG
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
10 11 0.22
11 5 0.10
12 33 0.65
13 1 0.02
14 1 0.02
ACGTcount: A:0.81, C:0.06, G:0.11, T:0.03
Consensus pattern (11 bp):
AAAAAAAAGAC
Found at i:31365355 original size:12 final size:12
Alignment explanation
Indices: 31365338--31365393 Score: 62
Period size: 12 Copynumber: 4.7 Consensus size: 12
31365328 AGTGGAGGCA
31365338 AAAAAAAAGGAC
1 AAAAAAAAGGAC
31365350 AAAAAAAA-GAC
1 AAAAAAAAGGAC
31365361 AAAAAAAAAGGTA-
1 -AAAAAAAAGG-AC
* *
31365374 AAAAAAAACGAG
1 AAAAAAAAGGAC
31365386 AAAAAAAA
1 AAAAAAAA
31365394 ACAAATAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 4 0.10
12 33 0.85
13 1 0.03
14 1 0.03
ACGTcount: A:0.80, C:0.05, G:0.12, T:0.02
Consensus pattern (12 bp):
AAAAAAAAGGAC
Found at i:31365363 original size:24 final size:25
Alignment explanation
Indices: 31365336--31365394 Score: 86
Period size: 24 Copynumber: 2.4 Consensus size: 25
31365326 TCAGTGGAGG
31365336 CAAAAAAAAAGG-ACAAAAAAAA-GA
1 CAAAAAAAAAGGTA-AAAAAAAACGA
31365360 CAAAAAAAAAGGTAAAAAAAAACGA
1 CAAAAAAAAAGGTAAAAAAAAACGA
*
31365385 GAAAAAAAAA
1 CAAAAAAAAA
31365395 CAAATAAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 20 0.62
25 12 0.38
ACGTcount: A:0.80, C:0.07, G:0.12, T:0.02
Consensus pattern (25 bp):
CAAAAAAAAAGGTAAAAAAAAACGA
Found at i:31365840 original size:6 final size:6
Alignment explanation
Indices: 31365819--31365881 Score: 51
Period size: 6 Copynumber: 10.2 Consensus size: 6
31365809 TACTTCACTT
*
31365819 GAAAAA -AAAAC G-AAAA GAAAAA TGAAAAAA TGAAAAAA GAAAATA -AAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA -G-AAAAA -G-AAAAA GAAAA-A GAAAAA
31365869 GAAAAA GAAAAA G
1 GAAAAA GAAAAA G
31365882 GAGAGGCCAA
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
5 9 0.18
6 24 0.49
7 3 0.06
8 13 0.27
ACGTcount: A:0.79, C:0.02, G:0.14, T:0.05
Consensus pattern (6 bp):
GAAAAA
Found at i:31365845 original size:12 final size:12
Alignment explanation
Indices: 31365819--31365880 Score: 54
Period size: 13 Copynumber: 4.9 Consensus size: 12
31365809 TACTTCACTT
*
31365819 GAAAA-AAAAAC
1 GAAAAGAAAAAA
31365830 GAAAAGAAAAATGA
1 GAAAAGAAAAA--A
*
31365844 AAAAATGAAAAAA
1 GAAAA-GAAAAAA
*
31365857 GAAAATAAAAAA
1 GAAAAGAAAAAA
31365869 GAAAAAGAAAAA
1 G-AAAAGAAAAA
31365881 GGAGAGGCCA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
11 5 0.12
12 12 0.29
13 14 0.34
14 4 0.10
15 6 0.15
ACGTcount: A:0.81, C:0.02, G:0.13, T:0.05
Consensus pattern (12 bp):
GAAAAGAAAAAA
Found at i:31366916 original size:88 final size:89
Alignment explanation
Indices: 31366767--31367430 Score: 544
Period size: 88 Copynumber: 7.5 Consensus size: 89
31366757 CGTAAATAGG
* * *
31366767 TCCTATCTTCCTATATTGGTAG-GAAGTGGATCAAAGATACAGATCTTGTCTTCCCATATTGGTG
1 TCCTATCTTCCTATATTGGTAGTGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
*
31366831 GCGAAGTAGATCGAAGGTAGCAGA
66 GCGAAGTAGATCGAAGATAGCAGA
*
31366855 TCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
1 TCCTATCTTCCTATATTGGTAGTGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
* *
31366919 GCGAAGTAGAT-TACAGAAAGCAGA
66 GCGAAGTAGATCGA-AGATAGCAGA
* * * * * * * * *
31366943 TCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
1 TCCTATCTTCCTATATTGGTAGTGAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGT
* * *
31367007 AG-GAAGTGGATCAAAGATA-CAGA
65 GGCGAAGTAGATCGAAGATAGCAGA
* * * * * * ***
31367030 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-
1 TCCTATCTTCCTATATTGGTAGTGAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGT
* * *
31367094 CGTGAAGTAGATCGAAGGTAGCAGA
65 GGCGAAGTAGATCGAAGATAGCAGA
*
31367119 TCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
1 TCCTATCTTCCTATATTGGTAGTGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
* * *
31367183 GCGAAGTAGATTGCAGAAAGCAGA
66 GCGAAGTAGATCGAAGATAGCAGA
* * * * * * ** *
31367207 TCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCGGTCTTCCTATATTGGT
1 TCCTATCTTCCTATATTGGTAGTGAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGT
* * * * *
31367271 AG-GAAGTGGATTGACGAT-GTAGA
65 GGCGAAGTAGATCGAAGATAGCAGA
* * * * * * * * ***
31367294 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATT--T
1 TCCTATCTTCCTATATTGGTAGTGAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGT
*
31367357 GGCGTGAAGTAGATCGAAGATTGCAGA
65 GGC--GAAGTAGATCGAAGATAGCAGA
* ** * * * *
31367384 TCTTGCCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATGGCAGAT
1 TCCTATCTTCCTATA-TTGGTAGTGAAGTAGATCGAAGAT-GCAGAT
31367431 TTTACCTCCC
Statistics
Matches: 466, Mismatches: 91, Indels: 35
0.79 0.15 0.06
Matches are distributed among these distances:
86 2 0.00
87 65 0.14
88 276 0.59
89 82 0.18
90 17 0.04
91 24 0.05
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (89 bp):
TCCTATCTTCCTATATTGGTAGTGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
GCGAAGTAGATCGAAGATAGCAGA
Found at i:31367030 original size:132 final size:131
Alignment explanation
Indices: 31366772--31367430 Score: 944
Period size: 132 Copynumber: 5.0 Consensus size: 131
31366762 ATAGGTCCTA
* * * * * *** * *
31366772 TCTTCCTATATTGGTAG-GAAGTGGATCAAAGATA-CAGATCTTGTCTTCCCATATTGGTGGCGA
1 TCTTCCCATATTGGTGGCGAAGTAGAT-GAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGA
31366835 AGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATC
64 AGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATC
31366900 TTG
129 TTG
*
31366903 TCTTCCCATATTGGTGGCGAAGTAGATTACAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATGA-AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
* *
31366968 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATACAGATCT
65 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
31367033 TG
130 TG
31367035 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGAT-GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
31367100 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
65 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
31367165 TG
130 TG
*
31367167 TCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGA-TGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
** * * *
31367232 GTAGATCGAAGGTAGCAGATCCGGTCTTCCTATATTGGTAGGAAGTGGATTGACGATGTAGATCT
65 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
31367297 TG
130 TG
* *
31367299 TCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTTGGCGTGA
1 TCTTCCCATATTGGTGGCGAAGTAGAT-GAAGAAAGCAGATCTTGTCTTCATGTA-TTGGCGTGA
* * * ** * * **
31367364 AGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATGGCAG
64 AGTAGATCGAAGGTAGCAGATCCTATCTTCCTATA-TTGGTAG-GAAGTGGATCGAAGAT-GCAG
31367429 AT
126 AT
31367431 TTTACCTCCC
Statistics
Matches: 482, Mismatches: 36, Indels: 15
0.90 0.07 0.03
Matches are distributed among these distances:
131 17 0.04
132 382 0.79
133 60 0.12
134 6 0.01
135 12 0.02
136 5 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (131 bp):
TCTTCCCATATTGGTGGCGAAGTAGATGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAG
TAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTT
G
Found at i:31367510 original size:88 final size:91
Alignment explanation
Indices: 31367393--31367801 Score: 218
Period size: 88 Copynumber: 4.6 Consensus size: 91
31367383 ATCTTGCCTT
* * *
31367393 CCTGTATTTGGCAG-CGAAGAAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGA
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGA
31367454 GTACATTGAAGCCGATAATTCTATCTC
65 GTACATTGAAGCCGATAATTCTATCTC
* * * * * * * *
31367481 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAG
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAG
* * ** ** ** * *
31367546 CAGATCAAAGATGGCAGATTTTACCTC
66 TACATTGAAGCCGATA-ATTCTATCTC
* * * * ** ** * * * * *
31367573 CCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-ATTCTATCTCCCTGTATTTGGCAGTGGAA
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAG
* ** * *
31367634 TAGATTGAAGATTGCA-GA-TCT-TGCCTT
66 TACATTGAAG-CCG-ATAATTCTAT--CTC
* * ** *
31367661 CCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-AAAGTGGA
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGA
31367722 GTACATTGAAGCCGATAATTCTATCTC
65 GTACATTGAAGCCGATAATTCTATCTC
* * * *
31367749 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGTAT
31367802 TTGGCAGCGA
Statistics
Matches: 223, Mismatches: 78, Indels: 38
0.66 0.23 0.11
Matches are distributed among these distances:
87 3 0.01
88 116 0.52
89 46 0.21
90 7 0.03
91 27 0.12
92 24 0.11
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (91 bp):
CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAG
TACATTGAAGCCGATAATTCTATCTC
Found at i:31367540 original size:46 final size:46
Alignment explanation
Indices: 31367334--31368073 Score: 236
Period size: 46 Copynumber: 16.4 Consensus size: 46
31367324 ATCGAAGAAA
* * * *
31367334 GCAGATCTTATCTTCATGTATTTGGC-GT-GAAGTAGATCGAAGATT
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATT
* * * * * *
31367379 GCAGATCTTGCCTTCCTGTATTTGGCAG-CGAAGAAGATCGAAGATG
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATT
* * * * * **
31367425 GCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CC
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* *
31367467 G-ATAAT-TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
1 GCA-GATCT-TACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * * * ** *
31367513 GCAGATCTTGCCTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATG
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATT
* * * * * **
31367559 GCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CC
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* *
31367601 G-ATAAT-TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
1 GCA-GATCT-TACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * * * ** *
31367647 GCAGATCTTGCCTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATG
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATT
* * ** * * **
31367693 GCAGATTTTACCTCCCTG-A-CT-AAAGTGGAGTACATTGAAG-CC
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* *
31367735 G-ATAAT-TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
1 GCA-GATCT-TACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * * * * *
31367781 GCAGATCTTGCCTTCCTGTATTTGGCAG-CGAAGCAGATCGAAGATG
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATT
* *** * * **
31367827 GCAGATTTTACCTCCCTG-A--CCACAGTGGAGTACATTGAAG-CC
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * *
31367869 G-ATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGAT
1 GCAGATCT-TACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT------T
* *** * * **
31367921 GGCAGATTTTACCTCCCTG-A--CCACAGTGGAGTACATTGAAG-CC
1 -GCAGATCTTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * * *
31367964 G-ATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATT
1 GCAGATCT-TACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
* * * ** * * *
31368010 GTAGATCTTGCCTTCCTGTATTTGGCAG-CAAAGCAGATCGAAGATG
1 GCAGATCTTACCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATT
*
31368056 GCAGATTTTACCTCCCTG
1 GCAGATCTTACCTCCCTG
31368074 ATTACAGTGG
Statistics
Matches: 486, Mismatches: 156, Indels: 105
0.65 0.21 0.14
Matches are distributed among these distances:
41 12 0.02
42 56 0.12
43 42 0.09
44 14 0.03
45 117 0.24
46 205 0.42
47 10 0.02
50 16 0.03
52 1 0.00
53 10 0.02
54 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.29
Consensus pattern (46 bp):
GCAGATCTTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
Found at i:31367606 original size:134 final size:134
Alignment explanation
Indices: 31367350--31367913 Score: 1042
Period size: 134 Copynumber: 4.2 Consensus size: 134
31367340 CTTATCTTCA
* *
31367350 TGTATTTGGC-GT-GAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGA
1 TGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
*
31367413 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
65 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
31367478 CTCCC
130 CTCCC
31367483 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
31367548 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
66 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
31367613 TCCC
131 TCCC
31367617 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
*
31367682 GATCAAAGATGGCAGATTTTACCTCCCTGACTAAAGTGGAGTACATTGAAGCCGATAATTCTATC
66 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
31367747 TCCC
131 TCCC
31367751 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
* * *
31367816 GATCGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATC
66 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
31367881 TCCC
131 TCCC
31367885 TGTATTTGGCAGTGGAATAGATTGAAGAT
1 TGTATTTGGCAGTGGAATAGATTGAAGAT
31367914 CAAAGATGGC
Statistics
Matches: 421, Mismatches: 8, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
133 10 0.02
134 408 0.97
135 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (134 bp):
TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
TCCC
Found at i:31367930 original size:95 final size:95
Alignment explanation
Indices: 31367815--31368008 Score: 370
Period size: 95 Copynumber: 2.0 Consensus size: 95
31367805 GCAGCGAAGC
*
31367815 AGATCGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
31367880 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATCTGGCAGTGGAATAGATTGA
31367910 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
31367975 CTCCCTGTATCTGGCAGTGGAATAGATTGA
66 CTCCCTGTATCTGGCAGTGGAATAGATTGA
31368005 AGAT
1 AGAT
31368009 TGTAGATCTT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 97 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATCTGGCAGTGGAATAGATTGA
Found at i:31367937 original size:229 final size:229
Alignment explanation
Indices: 31367681--31368113 Score: 767
Period size: 229 Copynumber: 1.9 Consensus size: 229
31367671 GCAGCGAAGC
* *
31367681 AGATCAAAGATGGCAGATTTTACCTCCCTGACTAAAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCAAAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
31367746 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
31367811 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
31367876 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
31367910 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCAAAGTGGAGTACATTGAAGCCGATAACTCTAT
*
31367975 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
** * **
31368040 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTT
131 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
31368105 CTATCTCCC
196 CTATCTCCC
31368114 GGGGCAAGAA
Statistics
Matches: 193, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
229 193 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (229 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCAAAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:31368175 original size:44 final size:45
Alignment explanation
Indices: 31368121--31368682 Score: 450
Period size: 44 Copynumber: 12.8 Consensus size: 45
31368111 CCCGGGGCAA
* * *
31368121 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * * *
31368165 GAAGTGGATCGACGA-CGCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * * * *
31368209 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * *
31368253 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * *
31368297 GAAGTGGATCCAAGATA-CAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * * *
31368341 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * *
31368385 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * *
31368429 GAAGTGGATCCAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * * * * *
31368473 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTAG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * *
31368517 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * * * *
31368561 GAAGTGGATCCAAGATA-CAGATCTTGTCTTCCCATACTGGTGGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * * * * * *
31368605 AAAGTAGATCGAAGAAAGTAGATCTTG-CCTCATGTATTGGCA-T
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * *
31368648 GAAGTAGATTGAAGATTA-CAGATCTTATCTCCCTA
1 GAAGTAGATCGAAGA-TAGCAGATCTTGTCTTCCTA
31368683 AGCAGTAGTG
Statistics
Matches: 397, Mismatches: 108, Indels: 26
0.75 0.20 0.05
Matches are distributed among these distances:
43 103 0.26
44 222 0.56
45 72 0.18
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (45 bp):
GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
Found at i:31368358 original size:132 final size:132
Alignment explanation
Indices: 31368121--31368663 Score: 917
Period size: 132 Copynumber: 4.1 Consensus size: 132
31368111 CCCGGGGCAA
* * * * * **
31368121 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
*
31368186 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
31368251 GT
131 GT
31368253 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
31368318 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
31368383 GT
131 GT
*
31368385 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
* *
31368450 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTAGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
31368515 GT
131 GT
31368517 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
* ** * *
31368582 TCTTGTCTTCCCATACTGGTGGTAAAGTAGATCGAAGAAAGTAGATCTTG-CCTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
*
31368646 AT
131 GT
*
31368648 GAAGTAGATTGAAGAT
1 GAAGTAGATCGAAGAT
31368664 TACAGATCTT
Statistics
Matches: 390, Mismatches: 21, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
131 28 0.07
132 362 0.93
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:31370440 original size:2 final size:2
Alignment explanation
Indices: 31370433--31370470 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
31370423 TAGATTGTTG
* *
31370433 TA TA TA TA TA TT TA TA TT TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
31370471 TTTGTTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (2 bp):
TA
Found at i:31374349 original size:12 final size:13
Alignment explanation
Indices: 31374328--31374356 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
31374318 AAAACAATTA
31374328 AAAAATAACATAT
1 AAAAATAACATAT
31374341 AAAAA-AACATAT
1 AAAAATAACATAT
31374353 AAAA
1 AAAA
31374357 CAGTTTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAAATAACATAT
Found at i:31383233 original size:21 final size:21
Alignment explanation
Indices: 31383209--31383250 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
31383199 AATTTTTATC
* * *
31383209 AAATATAAATATTATATTGAA
1 AAATACAAATATAAAATTGAA
31383230 AAATACAAATATAAAATTGAA
1 AAATACAAATATAAAATTGAA
31383251 CAAACATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (21 bp):
AAATACAAATATAAAATTGAA
Found at i:31396034 original size:17 final size:18
Alignment explanation
Indices: 31396007--31396040 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
31395997 TAAAACGTAC
31396007 ATAATAAAATCAAAATAT
1 ATAATAAAATCAAAATAT
31396025 ATAA-AAAATCAAAATA
1 ATAATAAAATCAAAATA
31396041 AAGGTTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24
Consensus pattern (18 bp):
ATAATAAAATCAAAATAT
Found at i:31405458 original size:18 final size:20
Alignment explanation
Indices: 31405425--31405467 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
31405415 GGGATTAAAT
31405425 TGGAAAGATGTTGAA-TTTA
1 TGGAAAGATGTTGAATTTTA
*
31405444 TGGAAA-ATTTTGAATTTTA
1 TGGAAAGATGTTGAATTTTA
31405463 TGGAA
1 TGGAA
31405468 TACATGGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (20 bp):
TGGAAAGATGTTGAATTTTA
Done.