Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 94 of 208
Found at i:32069505 original size:6 final size:6
Alignment explanation
Indices: 32069494--32069523 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
32069484 ATAGTAATTA
32069494 TATATT TATATT TATATT TATATT TATATT
1 TATATT TATATT TATATT TATATT TATATT
32069524 AAATCACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TATATT
Found at i:32071718 original size:9 final size:9
Alignment explanation
Indices: 32071700--32071765 Score: 64
Period size: 9 Copynumber: 7.2 Consensus size: 9
32071690 TTTGGTTAAA
32071700 AATTACCCG
1 AATTACCCG
*
32071709 AATTATCCG
1 AATTACCCG
32071718 -ATTGA-CCG
1 AATT-ACCCG
* *
32071726 AATTAACTG
1 AATTACCCG
32071735 AATTACCCG
1 AATTACCCG
32071744 AAAATTACCCG
1 --AATTACCCG
32071755 AATTACCCG
1 AATTACCCG
32071764 AA
1 AA
32071766 AATTACCCAA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
8 7 0.15
9 32 0.67
11 9 0.19
ACGTcount: A:0.38, C:0.26, G:0.12, T:0.24
Consensus pattern (9 bp):
AATTACCCG
Found at i:32071757 original size:20 final size:20
Alignment explanation
Indices: 32071734--32071773 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32071724 CGAATTAACT
32071734 GAATTACCCGAAAATTACCC
1 GAATTACCCGAAAATTACCC
32071754 GAATTACCCGAAAATTACCC
1 GAATTACCCGAAAATTACCC
32071774 AAAAAGTTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.30, G:0.10, T:0.20
Consensus pattern (20 bp):
GAATTACCCGAAAATTACCC
Found at i:32071778 original size:11 final size:11
Alignment explanation
Indices: 32071735--32071777 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
32071725 GAATTAACTG
32071735 AATTACCCGAA
1 AATTACCCGAA
32071746 AATTACCCG--
1 AATTACCCGAA
32071755 AATTACCCGAA
1 AATTACCCGAA
32071766 AATTACCC-AA
1 AATTACCCGAA
32071776 AA
1 AA
32071778 AGTTCGGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.30
10 4 0.13
11 17 0.57
ACGTcount: A:0.47, C:0.28, G:0.07, T:0.19
Consensus pattern (11 bp):
AATTACCCGAA
Found at i:32073952 original size:14 final size:14
Alignment explanation
Indices: 32073933--32073959 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32073923 GATTCTTAAT
32073933 TATAATTTAACATA
1 TATAATTTAACATA
32073947 TATAATTTAACAT
1 TATAATTTAACAT
32073960 GCTTCGATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (14 bp):
TATAATTTAACATA
Found at i:32074285 original size:18 final size:18
Alignment explanation
Indices: 32074264--32074304 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
32074254 TAATTGATAT
* *
32074264 GGAGGATATATTTGAGGA
1 GGAGGATACATGTGAGGA
*
32074282 GGAGGATACATGTGAGGT
1 GGAGGATACATGTGAGGA
32074300 GGAGG
1 GGAGG
32074305 TGGGTGATAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.02, G:0.46, T:0.22
Consensus pattern (18 bp):
GGAGGATACATGTGAGGA
Found at i:32074333 original size:18 final size:18
Alignment explanation
Indices: 32074264--32074335 Score: 54
Period size: 18 Copynumber: 3.7 Consensus size: 18
32074254 TAATTGATAT
* * *
32074264 GGAGGATATATTTGAGGA
1 GGAGGATACATTGGTGGA
32074282 GGAGGATACATGTGAGGTGGA
1 GGAGGATACAT-T--GGTGGA
*
32074303 GGTGGGTGATACATTGGTGGA
1 -G-GAG-GATACATTGGTGGA
32074324 GGAGGATACATT
1 GGAGGATACATT
32074336 TGAGGCTGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
18 18 0.42
19 3 0.07
20 1 0.02
21 10 0.23
22 1 0.02
23 3 0.07
24 7 0.16
ACGTcount: A:0.28, C:0.04, G:0.43, T:0.25
Consensus pattern (18 bp):
GGAGGATACATTGGTGGA
Found at i:32075279 original size:14 final size:14
Alignment explanation
Indices: 32075241--32075283 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
32075231 CAAAATATAC
32075241 AATATAATTAAA-T
1 AATATAATTAAATT
32075254 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
32075269 AA-ATAATTTAATT
1 AATATAATTAAATT
32075282 AA
1 AA
32075284 CTGTTTACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:32077765 original size:3 final size:3
Alignment explanation
Indices: 32077750--32077878 Score: 150
Period size: 3 Copynumber: 43.0 Consensus size: 3
32077740 TAAAACAATT
* **
32077750 TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TGG TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * ** *
32077798 TAA TAA TAA TAA GAA TAA GAA TAA TGG TAA TAA TAA TAA TAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** * *
32077846 TGG TAT TAA TAA TAA TAA TAA TAA CAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32077879 AAATCTTAAA
Statistics
Matches: 105, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 105 1.00
ACGTcount: A:0.60, C:0.01, G:0.08, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:32082995 original size:96 final size:98
Alignment explanation
Indices: 32082825--32083008 Score: 275
Period size: 96 Copynumber: 1.9 Consensus size: 98
32082815 GCACCTGCAT
* * *
32082825 TTTTCGTGTAAAAATTTCGATTCCAGAAAAGAGAAAAAAGATACATTTTTACCCAAAAGAATAGG
1 TTTTCGTGTAAAAATTTCAATTCCAGAAAAGAGAAAAAAGACACATTTTGACCCAAAAGAATAGG
*
32082890 TTAGAGAAAGTAGTGTCAAATATCTAGGTCATA
66 TTAGAGAAAGCAGTGTCAAATATCTAGGTCATA
* * *
32082923 TTTTC-TGTAAAAATTTCAATTCCAG-AAAGGGGAAAAA-ACACATATTTGCCCCAAAAGAATAG
1 TTTTCGTGTAAAAATTTCAATTCCAGAAAAGAGAAAAAAGACACAT-TTTGACCCAAAAGAATAG
32082985 GTTAGAGAAAGCAGTGTCAAATAT
65 GTTAGAGAAAGCAGTGTCAAATAT
32083009 TTAGAGGGAT
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
95 5 0.06
96 49 0.63
97 19 0.24
98 5 0.06
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.27
Consensus pattern (98 bp):
TTTTCGTGTAAAAATTTCAATTCCAGAAAAGAGAAAAAAGACACATTTTGACCCAAAAGAATAGG
TTAGAGAAAGCAGTGTCAAATATCTAGGTCATA
Found at i:32085794 original size:6 final size:6
Alignment explanation
Indices: 32085783--32085817 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
32085773 CTTTTCTCGG
* *
32085783 TCCCTA TCCCTA TCCTTA TCTCTA TCCCTA TCCCT
1 TCCCTA TCCCTA TCCCTA TCCCTA TCCCTA TCCCT
32085818 GTGGCGATCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.14, C:0.46, G:0.00, T:0.40
Consensus pattern (6 bp):
TCCCTA
Found at i:32085804 original size:24 final size:24
Alignment explanation
Indices: 32085770--32085817 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
32085760 CACGATCACG
* *
32085770 ATCCTTTTCTCGGTCCCTATCCCT
1 ATCCTTATCTCGATCCCTATCCCT
*
32085794 ATCCTTATCTCTATCCCTATCCCT
1 ATCCTTATCTCGATCCCTATCCCT
32085818 GTGGCGATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.12, C:0.42, G:0.04, T:0.42
Consensus pattern (24 bp):
ATCCTTATCTCGATCCCTATCCCT
Found at i:32090849 original size:20 final size:21
Alignment explanation
Indices: 32090824--32090863 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32090814 TGAAAACAAA
32090824 AAAATA-TA-TATCTAAAAATT
1 AAAATATTATTAT-TAAAAATT
32090844 AAAATATTATTATTAAAAAT
1 AAAATATTATTATTAAAAAT
32090864 AACTTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 9 0.50
22 3 0.17
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAATATTATTATTAAAAATT
Found at i:32092154 original size:9 final size:9
Alignment explanation
Indices: 32092129--32092169 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
32092119 TTAAAAAAAA
*
32092129 CGAATTACC
1 CGAATTAAC
32092138 CGAA-TAAC
1 CGAATTAAC
32092146 CGAATTAAC
1 CGAATTAAC
32092155 CGAATTAAC
1 CGAATTAAC
32092164 CGAATT
1 CGAATT
32092170 TCCTCATCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 7 0.23
9 23 0.77
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.22
Consensus pattern (9 bp):
CGAATTAAC
Found at i:32092165 original size:18 final size:17
Alignment explanation
Indices: 32092129--32092169 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
32092119 TTAAAAAAAA
*
32092129 CGAATTACCCGAATAAC
1 CGAATTAACCGAATAAC
32092146 CGAATTAACCGAATTAAC
1 CGAATTAACCGAA-TAAC
32092164 CGAATT
1 CGAATT
32092170 TCCTCATCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.22
Consensus pattern (17 bp):
CGAATTAACCGAATAAC
Found at i:32094249 original size:14 final size:14
Alignment explanation
Indices: 32094230--32094268 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
32094220 TAGACTTTAG
*
32094230 TTTTAGTTTTAGAC
1 TTTTAGTTTTAGAA
32094244 TTTTAGTTTTAGAA
1 TTTTAGTTTTAGAA
*
32094258 TTTTATTTTTA
1 TTTTAGTTTTA
32094269 TTTATTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.64
Consensus pattern (14 bp):
TTTTAGTTTTAGAA
Found at i:32094333 original size:18 final size:18
Alignment explanation
Indices: 32094312--32094354 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
32094302 TTGGGTTGGG
32094312 TAATTGGGTTAAGTTAGA
1 TAATTGGGTTAAGTTAGA
*
32094330 TAATTGGGTTAGGTTAGA
1 TAATTGGGTTAAGTTAGA
32094348 TAATTGG
1 TAATTGG
32094355 ATTTAGGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.40
Consensus pattern (18 bp):
TAATTGGGTTAAGTTAGA
Found at i:32094407 original size:13 final size:15
Alignment explanation
Indices: 32094377--32094414 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
32094367 AGTGGGCCTA
*
32094377 TTTATATATTATATT
1 TTTATTTATTATATT
32094392 TTTATTTATTA-ATT
1 TTTATTTATTATATT
32094406 TTT-TTTATT
1 TTTATTTATT
32094415 TTACCTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 6 0.27
14 6 0.27
15 10 0.45
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTATTTATTATATT
Found at i:32097454 original size:54 final size:54
Alignment explanation
Indices: 32097396--32097501 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 54
32097386 ATTGCGATTT
* *
32097396 TCCTAACAGACTTCCACATTCAGATTGTCTTGACAGACTTCCCAATTACAATCG
1 TCCTAACAGACTTCCACATTCAGATTGTCCTGACAGACCTCCCAATTACAATCG
*** * **
32097450 TCCTAGTGGACTTCCATATTCAGATTGTCCTGATGGACCTCCCAATTACAAT
1 TCCTAACAGACTTCCACATTCAGATTGTCCTGACAGACCTCCCAATTACAAT
32097502 TATCCTTACG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.31
Consensus pattern (54 bp):
TCCTAACAGACTTCCACATTCAGATTGTCCTGACAGACCTCCCAATTACAATCG
Found at i:32097461 original size:27 final size:27
Alignment explanation
Indices: 32097431--32097501 Score: 76
Period size: 27 Copynumber: 2.6 Consensus size: 27
32097421 TGTCTTGACA
32097431 GACTTCCCAATTACAATCGTCCT-AGTG
1 GACTTCCCAATTACAATCGTCCTGA-TG
*
32097458 GACTT-CCATATT-CAGATTGTCCTGATG
1 GACTTCCCA-ATTACA-ATCGTCCTGATG
*
32097485 GACCTCCCAATTACAAT
1 GACTTCCCAATTACAAT
32097502 TATCCTTACG
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
26 5 0.14
27 26 0.70
28 6 0.16
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (27 bp):
GACTTCCCAATTACAATCGTCCTGATG
Found at i:32097517 original size:54 final size:54
Alignment explanation
Indices: 32097405--32097518 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 54
32097395 TTCCTAACAG
* * * * *
32097405 ACTTCCACATTCAGATTGTCTTGACAGACTTCCCAATTACAATCGTCCTAGTGG
1 ACTTCCACATTCAGATTGTCCTGACAGACCTCCCAATTACAATCATCCTAGCGA
* ** *
32097459 ACTTCCATATTCAGATTGTCCTGATGGACCTCCCAATTACAATTATCCTTA-CGA
1 ACTTCCACATTCAGATTGTCCTGACAGACCTCCCAATTACAATCATCC-TAGCGA
32097513 ACTTCC
1 ACTTCC
32097519 CTCAATAGAT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 48 0.96
55 2 0.04
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (54 bp):
ACTTCCACATTCAGATTGTCCTGACAGACCTCCCAATTACAATCATCCTAGCGA
Found at i:32109398 original size:27 final size:27
Alignment explanation
Indices: 32109367--32109432 Score: 107
Period size: 27 Copynumber: 2.4 Consensus size: 27
32109357 AACTTTCCCT
*
32109367 CATTAGATAGTCATTACGGGT-TTCTCA
1 CATTAGATAGCCATTACGGGTCTT-TCA
32109394 CATTAGATAGCCATTACGGGTCTTTCA
1 CATTAGATAGCCATTACGGGTCTTTCA
32109421 CATTAGATAGCC
1 CATTAGATAGCC
32109433 CTTGCGAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
27 35 0.95
28 2 0.05
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (27 bp):
CATTAGATAGCCATTACGGGTCTTTCA
Found at i:32109448 original size:27 final size:27
Alignment explanation
Indices: 32109367--32109451 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
32109357 AACTTTCCCT
* * * *
32109367 CATTAGATAGTCATTACGGGTTTCTCA
1 CATTAGATAGCCATTACGAGTCTATCA
* *
32109394 CATTAGATAGCCATTACGGGTCTTTCA
1 CATTAGATAGCCATTACGAGTCTATCA
* *
32109421 CATTAGATAGCCCTTGCGAAGT-TATCA
1 CATTAGATAGCCATTACG-AGTCTATCA
32109448 CATT
1 CATT
32109452 TACGGTAATG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 48 0.96
28 2 0.04
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
CATTAGATAGCCATTACGAGTCTATCA
Found at i:32110981 original size:18 final size:17
Alignment explanation
Indices: 32110939--32110981 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
32110929 TGTTTAAGTT
*
32110939 TATAATATTTTATATTA
1 TATAATTTTTTATATTA
* *
32110956 TGTTATTTTTATATATTA
1 TATAATTTTT-TATATTA
32110974 TATAATTT
1 TATAATTT
32110982 ATAACACATT
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
TATAATTTTTTATATTA
Found at i:32112061 original size:9 final size:9
Alignment explanation
Indices: 32112046--32112075 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
32112036 TTATATTTTT
32112046 AAAAAATAA
1 AAAAAATAA
*
32112055 TAAAAATAA
1 AAAAAATAA
32112064 AAAAAATAA
1 AAAAAATAA
32112073 AAA
1 AAA
32112076 TTCTTAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAAAATAA
Found at i:32112065 original size:15 final size:15
Alignment explanation
Indices: 32112045--32112076 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32112035 TTTATATTTT
32112045 TAAAAAATAATAAAAA
1 TAAAAAA-AATAAAAA
32112061 TAAAAAAAATAAAAA
1 TAAAAAAAATAAAAA
32112076 T
1 T
32112077 TCTTAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (15 bp):
TAAAAAAAATAAAAA
Found at i:32112306 original size:36 final size:36
Alignment explanation
Indices: 32112266--32112339 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
32112256 ATACGATAAC
32112266 AAGATGTTGATTTGACATGCTTAATTTTTTAAATTT
1 AAGATGTTGATTTGACATGCTTAATTTTTTAAATTT
32112302 AAGATGTTGATTTGACATGCTTAATTTTTTAAATTT
1 AAGATGTTGATTTGACATGCTTAATTTTTTAAATTT
32112338 AA
1 AA
32112340 CTCAAACAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.49
Consensus pattern (36 bp):
AAGATGTTGATTTGACATGCTTAATTTTTTAAATTT
Found at i:32114165 original size:27 final size:27
Alignment explanation
Indices: 32114078--32114231 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
32114068 CCCCAAACTA
* *
32114078 TTATAAAATGACTGTTATG-CCCTCACG
1 TTATAAAATGACTATTATGCCCCT-ATG
** *
32114105 TGGTAAAATGACTATTATG-CCCTCACG
1 TTATAAAATGACTATTATGCCCCT-ATG
**
32114132 TGGTAAAATGACTATTATGCCCCTATG
1 TTATAAAATGACTATTATGCCCCTATG
** *
32114159 TTATAAAATGA-TGGCTATGCCCCAATG
1 TTATAAAATGACT-ATTATGCCCCTATG
32114186 TTATAAAATGACTATTATGCCCCTATG
1 TTATAAAATGACTATTATGCCCCTATG
*
32114213 TTATAAAATGATTA-TATGC
1 TTATAAAATGACTATTATGC
32114232 TTAATGTTAT
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
26 6 0.05
27 100 0.90
28 5 0.05
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (27 bp):
TTATAAAATGACTATTATGCCCCTATG
Found at i:32114549 original size:34 final size:32
Alignment explanation
Indices: 32114505--32114572 Score: 109
Period size: 34 Copynumber: 2.1 Consensus size: 32
32114495 GAACTATTAT
*
32114505 TGTCATTGTAATGGGCTAAGGCCCACACTGATAC
1 TGTCACTGTAATGGGCTAAGGCCCA-ACTGA-AC
32114539 TGTCACTGTAATGGGCTAAGGCCCAACTGAAC
1 TGTCACTGTAATGGGCTAAGGCCCAACTGAAC
32114571 TG
1 TG
32114573 AACTGTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
32 4 0.12
33 5 0.15
34 24 0.73
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (32 bp):
TGTCACTGTAATGGGCTAAGGCCCAACTGAAC
Found at i:32121192 original size:19 final size:18
Alignment explanation
Indices: 32121138--32121258 Score: 86
Period size: 20 Copynumber: 6.3 Consensus size: 18
32121128 TTATTAAATT
*
32121138 TTAATAAAAA-ATTCAAATA
1 TTAA-AAAAATATT-AAAAA
*
32121157 TTAAAAAATTATTAAAAA
1 TTAAAAAAATATTAAAAA
32121175 TTAGAAAAAATA-TAAAAA
1 TTA-AAAAAATATTAAAAA
32121193 TCGTAAAAAAATATTAAAAA
1 T--TAAAAAAATATTAAAAA
*
32121213 TTGTAAAAAAAAATTATAAAA
1 -T-TAAAAAAATATTA-AAAA
* *
32121234 TATATAGAAATA-TAAAAA
1 T-TAAAAAAATATTAAAAA
32121252 TATAAAA
1 T-TAAAA
32121259 TTTTATAAAG
Statistics
Matches: 85, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
18 27 0.32
19 24 0.28
20 29 0.34
21 5 0.06
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (18 bp):
TTAAAAAAATATTAAAAA
Found at i:32121218 original size:20 final size:20
Alignment explanation
Indices: 32121158--32121234 Score: 88
Period size: 20 Copynumber: 3.9 Consensus size: 20
32121148 ATTCAAATAT
*
32121158 TAAAAAATTATTAAAAA-T-
1 TAAAAAAATATTAAAAATTG
*
32121176 TAGAAAAAATA-TAAAAATCG
1 TA-AAAAAATATTAAAAATTG
32121196 TAAAAAAATATTAAAAATTG
1 TAAAAAAATATTAAAAATTG
*
32121216 TAAAAAAAAATTATAAAAT
1 TAAAAAAATATTA-AAAAT
32121235 ATATAGAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
18 8 0.16
19 15 0.30
20 22 0.44
21 5 0.10
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (20 bp):
TAAAAAAATATTAAAAATTG
Found at i:32121502 original size:34 final size:34
Alignment explanation
Indices: 32121462--32121529 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
32121452 TCGTTAAATT
* **
32121462 TTTTTTATGATTTTATAAAATTTTATAATTTTTA
1 TTTTTTACGATTTTATAAAAAATTATAATTTTTA
*
32121496 TTTTTTACGATTTTATAAAAAATTCTAATTTTTA
1 TTTTTTACGATTTTATAAAAAATTATAATTTTTA
32121530 ATAAATTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (34 bp):
TTTTTTACGATTTTATAAAAAATTATAATTTTTA
Found at i:32121541 original size:17 final size:17
Alignment explanation
Indices: 32121505--32121545 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
32121495 ATTTTTTACG
32121505 ATTTTATAAAAAATTCTA
1 ATTTT-TAAAAAATTCTA
* *
32121523 ATTTTTAATAAATTTTA
1 ATTTTTAAAAAATTCTA
32121540 ATTTTT
1 ATTTTT
32121546 TATATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTTAAAAAATTCTA
Found at i:32121565 original size:18 final size:18
Alignment explanation
Indices: 32121544--32121585 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
32121534 ATTTTAATTT
*
32121544 TTTATA-TTTTTATTAAAA
1 TTTATAGTTTTT-CTAAAA
32121562 TTTAATAGTTTTTCTAAAA
1 TTT-ATAGTTTTTCTAAAA
32121581 TTTAT
1 TTTAT
32121586 TAATTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.24
19 11 0.52
20 5 0.24
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTATAGTTTTTCTAAAA
Found at i:32129401 original size:16 final size:16
Alignment explanation
Indices: 32129371--32129403 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32129361 CTAAAATTTC
32129371 TAATTCTATTTTTTAA
1 TAATTCTATTTTTTAA
32129387 TAATT-TATTTATTTAA
1 TAATTCTATTT-TTTAA
32129403 T
1 T
32129404 TCTGAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (16 bp):
TAATTCTATTTTTTAA
Found at i:32131747 original size:42 final size:43
Alignment explanation
Indices: 32131647--32131785 Score: 129
Period size: 42 Copynumber: 3.2 Consensus size: 43
32131637 TGTGATCTCG
* ** * * *
32131647 TGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA-GATTTACG
1 TGTAAGACCATGTCTGGGACAATGGCATTGATAT-ATGA-TTACA
* * *
32131691 TGTAAGACCATGTCTGGGACATTGGTATTG-TATATGATTTCA
1 TGTAAGACCATGTCTGGGACAATGGCATTGATATATGATTACA
* * *
32131733 TGTAAGGCCCTGTCTGGGACAATGGCATTGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACAATGGCATTGATATATGATTACA
*
32131776 TGTAAAACCA
1 TGTAAGACCA
32131786 CGTTTGAGAT
Statistics
Matches: 77, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 30 0.39
43 21 0.27
44 26 0.34
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAATGGCATTGATATATGATTACA
Found at i:32143334 original size:135 final size:135
Alignment explanation
Indices: 32143066--32143467 Score: 686
Period size: 135 Copynumber: 3.0 Consensus size: 135
32143056 CCTTAATTTA
* * * ** * * *
32143066 ACTTAAAATTTTGTTTTTTTATTCAATCAAATAGCTGGACTTTACCTCCAGGTTGAGTTTGGAAC
1 ACTTAAAGTTTTGTGTTTTTATTCAATCAAATACCTAAAGTTTACTTCAAGGTTGAGTTTGGAAC
* *
32143131 TCAACTTTTC----TAAAAACCTTAAATGGCTTAAAGTAGCCATGTGTAGGAAAATTTATTGCCG
66 TTAATTTTTCTAATTAAAAACCTTAAATGGCTTAAAGTAGCCATGTGTAGGAAAATTTATTGCCG
32143192 TTGTT
131 TTGTT
32143197 ACTTAAAGTTTTGTGTTTTTATTCAATCAAATACCTAAAGTTTACTTCAAGGTTGAGTTTGGAAC
1 ACTTAAAGTTTTGTGTTTTTATTCAATCAAATACCTAAAGTTTACTTCAAGGTTGAGTTTGGAAC
32143262 TTAATTTTTCTAATTAAAAACCTTAAATGGCTTAAAGTAGCCATGTGTAGGAAAATTTATTGCCG
66 TTAATTTTTCTAATTAAAAACCTTAAATGGCTTAAAGTAGCCATGTGTAGGAAAATTTATTGCCG
32143327 TTGTT
131 TTGTT
32143332 ACTTAAAGTTTTGTGTTTTTATTCAATCAAATACCTAAAGTTTACTTCAAGGTTGAGTTTGGAAC
1 ACTTAAAGTTTTGTGTTTTTATTCAATCAAATACCTAAAGTTTACTTCAAGGTTGAGTTTGGAAC
32143397 TTAATTTTTCTAATTAAAAACCTTAAATGGCTTAAAGTAGCCATGTGTAGGAAAATTTATTGCCG
66 TTAATTTTTCTAATTAAAAACCTTAAATGGCTTAAAGTAGCCATGTGTAGGAAAATTTATTGCCG
32143462 TTGTT
131 TTGTT
32143467 A
1 A
32143468 GTTAGCACCT
Statistics
Matches: 257, Mismatches: 10, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
131 65 0.25
135 192 0.75
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (135 bp):
ACTTAAAGTTTTGTGTTTTTATTCAATCAAATACCTAAAGTTTACTTCAAGGTTGAGTTTGGAAC
TTAATTTTTCTAATTAAAAACCTTAAATGGCTTAAAGTAGCCATGTGTAGGAAAATTTATTGCCG
TTGTT
Found at i:32153529 original size:9 final size:9
Alignment explanation
Indices: 32153515--32153546 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
32153505 AACTTGGTGC
32153515 ATTTTGTTT
1 ATTTTGTTT
32153524 ATTTTGTTT
1 ATTTTGTTT
32153533 ATTTTGTTT
1 ATTTTGTTT
32153542 ATTTT
1 ATTTT
32153547 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:32153627 original size:23 final size:23
Alignment explanation
Indices: 32153597--32153648 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
32153587 TGCAACTTGG
32153597 TTTCATAATAATAGCTA-ATATGC
1 TTTCATAATAATAGCTATA-ATGC
*
32153620 TTTCATAATGATAGCTATAATGC
1 TTTCATAATAATAGCTATAATGC
32153643 TTTCAT
1 TTTCAT
32153649 CTTTTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (23 bp):
TTTCATAATAATAGCTATAATGC
Found at i:32157987 original size:9 final size:9
Alignment explanation
Indices: 32157973--32158004 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
32157963 AACTTGGTGC
32157973 ATTTTGTTT
1 ATTTTGTTT
32157982 ATTTTGTTT
1 ATTTTGTTT
32157991 ATTTTGTTT
1 ATTTTGTTT
32158000 ATTTT
1 ATTTT
32158005 AATATTTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:32158084 original size:23 final size:23
Alignment explanation
Indices: 32158054--32158105 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
32158044 TGCAACTTGG
32158054 TTTCATAATAATAGCTA-ATATGC
1 TTTCATAATAATAGCTATA-ATGC
*
32158077 TTTCATAATGATAGCTATAATGC
1 TTTCATAATAATAGCTATAATGC
32158100 TTTCAT
1 TTTCAT
32158106 CTTTTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (23 bp):
TTTCATAATAATAGCTATAATGC
Found at i:32159847 original size:24 final size:22
Alignment explanation
Indices: 32159813--32159857 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
32159803 TGTAATAATT
*
32159813 TCATTTTTAATTTTCATGTTTC
1 TCATTTTTAATTTCCATGTTTC
32159835 TCATCTTTCTAATTTCCATGTTT
1 TCAT-TTT-TAATTTCCATGTTT
32159858 ATAGTCATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 3 0.15
24 13 0.65
ACGTcount: A:0.18, C:0.18, G:0.04, T:0.60
Consensus pattern (22 bp):
TCATTTTTAATTTCCATGTTTC
Found at i:32162978 original size:22 final size:25
Alignment explanation
Indices: 32162930--32162981 Score: 65
Period size: 22 Copynumber: 2.2 Consensus size: 25
32162920 AAGAGGAGAA
*
32162930 AAAGAAAGAGAAATGATGAAAACAC
1 AAAGAAAGAGAAATGATAAAAACAC
*
32162955 AAAGAAA-A-AAATGA-AAAAATAC
1 AAAGAAAGAGAAATGATAAAAACAC
32162977 AAAGA
1 AAAGA
32162982 GGCGGAGATG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 11 0.44
23 6 0.24
24 1 0.04
25 7 0.28
ACGTcount: A:0.71, C:0.06, G:0.15, T:0.08
Consensus pattern (25 bp):
AAAGAAAGAGAAATGATAAAAACAC
Found at i:32163073 original size:21 final size:22
Alignment explanation
Indices: 32163049--32163095 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
32163039 AAAGAATATG
*
32163049 AAGAGAAATAAG-AGAAGAAGA
1 AAGAGAAAGAAGTAGAAGAAGA
* *
32163070 AAGA-AAAGAAGTATAAGGAGA
1 AAGAGAAAGAAGTAGAAGAAGA
32163091 AAGAG
1 AAGAG
32163096 GTTGAGGGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.64, C:0.00, G:0.30, T:0.06
Consensus pattern (22 bp):
AAGAGAAAGAAGTAGAAGAAGA
Found at i:32169902 original size:5 final size:5
Alignment explanation
Indices: 32169892--32169916 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
32169882 TAAGCAATGC
32169892 TATTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT
32169917 GGATTGAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TATTT
Found at i:32172057 original size:21 final size:22
Alignment explanation
Indices: 32172033--32172092 Score: 70
Period size: 21 Copynumber: 2.7 Consensus size: 22
32172023 TTAATATATA
32172033 AACAAAAATTAAATTAAATTT-
1 AACAAAAATTAAATTAAATTTG
*
32172054 AACAAAAATTAACA-TGAATTTG
1 AACAAAAATTAA-ATTAAATTTG
*
32172076 AACTAAAAATTATATTA
1 AAC-AAAAATTAAATTA
32172093 TTAACATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 18 0.56
22 5 0.16
23 9 0.28
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.32
Consensus pattern (22 bp):
AACAAAAATTAAATTAAATTTG
Found at i:32175034 original size:21 final size:23
Alignment explanation
Indices: 32175009--32175061 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
32174999 TGGGTTTAAA
32175009 AATTTTAATTTTAATTGA-A-TT
1 AATTTTAATTTTAATTGAGATTT
* *
32175030 AATTTTAAATTTAGTTGAGATTT
1 AATTTTAATTTTAATTGAGATTT
*
32175053 AATTATAAT
1 AATTTTAAT
32175062 CTAAAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 16 0.62
22 1 0.04
23 9 0.35
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.53
Consensus pattern (23 bp):
AATTTTAATTTTAATTGAGATTT
Found at i:32177130 original size:13 final size:14
Alignment explanation
Indices: 32177112--32177140 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32177102 AAGAGAAGAT
32177112 AATATTT-TATAAA
1 AATATTTATATAAA
32177125 AATATTTATATAAA
1 AATATTTATATAAA
32177139 AA
1 AA
32177141 CATGAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATATTTATATAAA
Found at i:32182898 original size:38 final size:38
Alignment explanation
Indices: 32182845--32183034 Score: 263
Period size: 38 Copynumber: 5.0 Consensus size: 38
32182835 AATTTTCAAT
* *
32182845 ACACCGGCACAAAGCCTGCTAGACACATAGCTCGAATA
1 ACACCGGCACAAAGCCTGCTAGGCACATAGCCCGAATA
* * * *
32182883 AAACCGGTACAAAGCCTGTTAGGCACGTAGCCCGAATA
1 ACACCGGCACAAAGCCTGCTAGGCACATAGCCCGAATA
* * * *
32182921 TCACCGGTACAAAGCCTGCTAGGCACATAACCTGAATA
1 ACACCGGCACAAAGCCTGCTAGGCACATAGCCCGAATA
* *
32182959 TCACCGGCACAAAGCCTGCTAGGCACATAGCTCGAATA
1 ACACCGGCACAAAGCCTGCTAGGCACATAGCCCGAATA
*
32182997 ACACTGGCACAAAGCCTGCTAGGCACATAGCCCGAATA
1 ACACCGGCACAAAGCCTGCTAGGCACATAGCCCGAATA
32183035 TCATTACGTT
Statistics
Matches: 133, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 133 1.00
ACGTcount: A:0.34, C:0.30, G:0.21, T:0.15
Consensus pattern (38 bp):
ACACCGGCACAAAGCCTGCTAGGCACATAGCCCGAATA
Found at i:32184980 original size:29 final size:29
Alignment explanation
Indices: 32184928--32185049 Score: 120
Period size: 29 Copynumber: 4.2 Consensus size: 29
32184918 TAGTAAGCCA
* *
32184928 TGTGGTAAACCGTGTGGGTCACACGGCCG
1 TGTGGTTAACCGTGTGGGTCACACGACCG
* * * *
32184957 TGTAGTTAGCCGTGTGGGTTACACAACCG
1 TGTGGTTAACCGTGTGGGTCACACGACCG
* *
32184986 TGTGG-CAACCCGTGTGGGTCACACGACCA
1 TGTGGTTAA-CCGTGTGGGTCACACGACCG
* * * *
32185015 TGTGGTTAACCTTGTAGGTTACACGACTG
1 TGTGGTTAACCGTGTGGGTCACACGACCG
32185044 TGTGGT
1 TGTGGT
32185050 AGGTTGTGTG
Statistics
Matches: 73, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
28 1 0.01
29 70 0.96
30 2 0.03
ACGTcount: A:0.19, C:0.22, G:0.33, T:0.26
Consensus pattern (29 bp):
TGTGGTTAACCGTGTGGGTCACACGACCG
Found at i:32184999 original size:58 final size:58
Alignment explanation
Indices: 32184928--32185048 Score: 152
Period size: 58 Copynumber: 2.1 Consensus size: 58
32184918 TAGTAAGCCA
* * * * *
32184928 TGTGGTAAACCGTGTGGGTCACACGGCCGTGTAGTTAGCCGTGTGGGTTACACAACCG
1 TGTGGCAAACCGTGTGGGTCACACGACCATGTAGTTAACCGTGTAGGTTACACAACCG
* * * * *
32184986 TGTGGCAACCCGTGTGGGTCACACGACCATGTGGTTAACCTTGTAGGTTACACGACTG
1 TGTGGCAAACCGTGTGGGTCACACGACCATGTAGTTAACCGTGTAGGTTACACAACCG
32185044 TGTGG
1 TGTGG
32185049 TAGGTTGTGT
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.19, C:0.22, G:0.33, T:0.26
Consensus pattern (58 bp):
TGTGGCAAACCGTGTGGGTCACACGACCATGTAGTTAACCGTGTAGGTTACACAACCG
Found at i:32188933 original size:3 final size:3
Alignment explanation
Indices: 32188887--32188914 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
32188877 TTTTTCATCC
32188887 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
32188915 ATGATTATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:32190414 original size:3 final size:3
Alignment explanation
Indices: 32190406--32190438 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
32190396 TTTTAAGCCT
32190406 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
32190439 GTGAGTCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:32191733 original size:16 final size:15
Alignment explanation
Indices: 32191684--32191722 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
32191674 TTTCCTGGTG
* *
32191684 ATCACATTCCCAGCA
1 ATCACATTCCAAGAA
32191699 ATCACATTCCAAGAA
1 ATCACATTCCAAGAA
32191714 ATCACATTC
1 ATCACATTC
32191723 TATTGAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.38, C:0.33, G:0.05, T:0.23
Consensus pattern (15 bp):
ATCACATTCCAAGAA
Found at i:32192896 original size:5 final size:5
Alignment explanation
Indices: 32192886--32192937 Score: 68
Period size: 5 Copynumber: 10.4 Consensus size: 5
32192876 TAACTATCCC
* * * *
32192886 TTCTT TTCTT TTCTT TTCTT TTCCT TTCCT TTCCT TTCTT TTCCT TTCTT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT
32192936 TT
1 TT
32192938 ACAATTATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (5 bp):
TTCTT
Found at i:32192901 original size:10 final size:10
Alignment explanation
Indices: 32192890--32192937 Score: 78
Period size: 10 Copynumber: 4.8 Consensus size: 10
32192880 TATCCCTTCT
*
32192890 TTTCTTTTCT
1 TTTCTTTTCC
32192900 TTTCTTTTCC
1 TTTCTTTTCC
*
32192910 TTTCCTTTCC
1 TTTCTTTTCC
32192920 TTTCTTTTCC
1 TTTCTTTTCC
32192930 TTTCTTTT
1 TTTCTTTT
32192938 ACAATTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTCTTTTCC
Found at i:32192906 original size:15 final size:15
Alignment explanation
Indices: 32192886--32192937 Score: 77
Period size: 15 Copynumber: 3.5 Consensus size: 15
32192876 TAACTATCCC
*
32192886 TTCTTTTCTTTTCTT
1 TTCTTTTCTTTTCCT
*
32192901 TTCTTTTCCTTTCCT
1 TTCTTTTCTTTTCCT
*
32192916 TTCCTTTCTTTTCCT
1 TTCTTTTCTTTTCCT
32192931 TTCTTTT
1 TTCTTTT
32192938 ACAATTATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (15 bp):
TTCTTTTCTTTTCCT
Found at i:32193836 original size:60 final size:60
Alignment explanation
Indices: 32193730--32193845 Score: 144
Period size: 60 Copynumber: 1.9 Consensus size: 60
32193720 GTTTTTTTGA
* * ** *
32193730 AATTTTTAGAATTGGAACTAAATTGATAAATTTTGTAAATGTTGAGGGCTAAATTTATTG
1 AATTTTTAGAATTGGAACTAAAATGACAAATTTTGTAAATACTGAGGACTAAATTTATTG
* * *
32193790 AATTTTTA-AGATTTGAATTAAAATGACAAATTTTGTAAATACTGAGGATTAAATTT
1 AATTTTTAGA-ATTGGAACTAAAATGACAAATTTTGTAAATACTGAGGACTAAATTT
32193846 GTTTAGTATT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
59 1 0.02
60 46 0.98
ACGTcount: A:0.40, C:0.03, G:0.16, T:0.41
Consensus pattern (60 bp):
AATTTTTAGAATTGGAACTAAAATGACAAATTTTGTAAATACTGAGGACTAAATTTATTG
Found at i:32193862 original size:60 final size:59
Alignment explanation
Indices: 32193730--32193863 Score: 142
Period size: 60 Copynumber: 2.2 Consensus size: 59
32193720 GTTTTTTTGA
* * * ** *
32193730 AATTTTTAGAATTGGAACTAAATTGATAAATTTTGTAAATGTTGAGGGCTAAATTTATTG
1 AATTTTTAG-ATTTGAACTAAAATGACAAATTTTGTAAATACTGAGGACTAAATTTATTG
* * * *
32193790 AATTTTTAAGATTTGAATTAAAATGACAAATTTTGTAAATACTGAGGATTAAATTTGTTT
1 AATTTTT-AGATTTGAACTAAAATGACAAATTTTGTAAATACTGAGGACTAAATTTATTG
*
32193850 AGTATTTTAGATTT
1 AAT-TTTTAGATTT
32193864 AGGGTCAAAT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
60 55 0.90
61 6 0.10
ACGTcount: A:0.37, C:0.03, G:0.16, T:0.44
Consensus pattern (59 bp):
AATTTTTAGATTTGAACTAAAATGACAAATTTTGTAAATACTGAGGACTAAATTTATTG
Found at i:32196321 original size:21 final size:21
Alignment explanation
Indices: 32196297--32196340 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
32196287 ATATGTAGTG
*
32196297 ATACAATATGTATGATCTGTT
1 ATACAATATGTATGATCTATT
* * *
32196318 ATACGATTTGTCTGATCTATT
1 ATACAATATGTATGATCTATT
32196339 AT
1 AT
32196341 TCATCAAGCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (21 bp):
ATACAATATGTATGATCTATT
Found at i:32197836 original size:29 final size:30
Alignment explanation
Indices: 32197800--32197874 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 30
32197790 GTGTTACAAA
32197800 AAAATTTATATATAAAATT-ACATAAAA-T
1 AAAATTTATATATAAAATTCACATAAAACT
* * *
32197828 CAAAATTTATGTATATAATTGCACATTAAACT
1 -AAAATTTATATATAAAATT-CACATAAAACT
32197860 AAAATTTATATATAA
1 AAAATTTATATATAA
32197875 TTTTGATATT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
29 17 0.45
31 20 0.53
32 1 0.03
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (30 bp):
AAAATTTATATATAAAATTCACATAAAACT
Found at i:32197864 original size:31 final size:28
Alignment explanation
Indices: 32197800--32197876 Score: 77
Period size: 29 Copynumber: 2.6 Consensus size: 28
32197790 GTGTTACAAA
*
32197800 AAAATTTATATATAAAATTACATAAAATC
1 AAAATTTAT-TATATAATTACATAAAATC
*
32197829 AAAATTTATGTATATAATTGCACATTAAA-C
1 AAAATTTAT-TATATAATT--ACATAAAATC
32197859 TAAAATTTA-TATATAATT
1 -AAAATTTATTATATAATT
32197877 TTGATATTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 26 0.62
30 1 0.02
31 15 0.36
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (28 bp):
AAAATTTATTATATAATTACATAAAATC
Found at i:32204715 original size:35 final size:35
Alignment explanation
Indices: 32204649--32204716 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
32204639 GTTAGATTTT
* * *
32204649 ATTATTAAAATAATAAAATTTTAAATTTTAAAAAA
1 ATTATAAAAATAATAAAATTTAAAATATTAAAAAA
*
32204684 ATTATAAAAAT-ATAGAATATTAAAATATTAAAA
1 ATTATAAAAATAATAAAAT-TTAAAATATTAAAA
32204717 TTGCATTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 6 0.21
35 22 0.79
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (35 bp):
ATTATAAAAATAATAAAATTTAAAATATTAAAAAA
Found at i:32220697 original size:22 final size:22
Alignment explanation
Indices: 32220671--32220716 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
32220661 TTGGGTTTTG
*
32220671 TTTGAAGAGAAAAATATTGGGT
1 TTTGAAGAGAAAAATAATGGGT
* *
32220693 TTTGATGAGAAAATTAATGGGT
1 TTTGAAGAGAAAAATAATGGGT
32220715 TT
1 TT
32220717 GGAGGGAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (22 bp):
TTTGAAGAGAAAAATAATGGGT
Found at i:32232405 original size:15 final size:15
Alignment explanation
Indices: 32232385--32232418 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32232375 TTGTATTTTA
32232385 TTTTAATTTAATTAT
1 TTTTAATTTAATTAT
**
32232400 TTTTAATTTTTTTAT
1 TTTTAATTTAATTAT
32232415 TTTT
1 TTTT
32232419 CGAATTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTAATTTAATTAT
Found at i:32233124 original size:7 final size:7
Alignment explanation
Indices: 32233112--32233141 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
32233102 AAATTATTTT
32233112 AAAAATA
1 AAAAATA
32233119 AAAAATA
1 AAAAATA
32233126 AAAAAT-
1 AAAAATA
32233132 AAAAATA
1 AAAAATA
32233139 AAA
1 AAA
32233142 GTATTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAAATA
Found at i:32233127 original size:13 final size:14
Alignment explanation
Indices: 32233112--32233141 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
32233102 AAATTATTTT
32233112 AAAAATAAAAAATA
1 AAAAATAAAAAATA
32233126 AAAAAT-AAAAATA
1 AAAAATAAAAAATA
32233139 AAA
1 AAA
32233142 GTATTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (14 bp):
AAAAATAAAAAATA
Found at i:32235630 original size:48 final size:48
Alignment explanation
Indices: 32235562--32235665 Score: 190
Period size: 48 Copynumber: 2.2 Consensus size: 48
32235552 TCATGAATTT
*
32235562 TATATTTAAGATTTATTTAATTTCATTATTTGATATTTGCAAATATTA
1 TATATATAAGATTTATTTAATTTCATTATTTGATATTTGCAAATATTA
*
32235610 TATATATAAGATTTATTTAATTTCATTATTTGATATTTGTAAATATTA
1 TATATATAAGATTTATTTAATTTCATTATTTGATATTTGCAAATATTA
32235658 TATATATA
1 TATATATA
32235666 TATAAAGTTC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.54
Consensus pattern (48 bp):
TATATATAAGATTTATTTAATTTCATTATTTGATATTTGCAAATATTA
Found at i:32258465 original size:13 final size:13
Alignment explanation
Indices: 32258447--32258472 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32258437 TATTTCATTT
32258447 ATGTGAAAATAGA
1 ATGTGAAAATAGA
32258460 ATGTGAAAATAGA
1 ATGTGAAAATAGA
32258473 CTCATTTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (13 bp):
ATGTGAAAATAGA
Found at i:32258612 original size:8 final size:8
Alignment explanation
Indices: 32258601--32258625 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
32258591 TCTTTCATAA
32258601 TTTCACTT
1 TTTCACTT
32258609 TTTCACTT
1 TTTCACTT
32258617 TTTCACTT
1 TTTCACTT
32258625 T
1 T
32258626 CAATCACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTCACTT
Found at i:32258875 original size:51 final size:50
Alignment explanation
Indices: 32258803--32258998 Score: 223
Period size: 51 Copynumber: 3.9 Consensus size: 50
32258793 CAATGATGTT
* * *
32258803 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATC
* * * * *
32258854 CGATACACGTAGTAGCTTGCACATAGTACTACACACGTGATCGAAACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* * * * *
32258905 CGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TC
* *
32258955 TGGTACACGTAGTAGCCTGCACATAGTACTACACACATGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
32258999 TACTTTCACT
Statistics
Matches: 118, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
49 2 0.02
50 39 0.33
51 75 0.64
52 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCATC
Found at i:32266953 original size:41 final size:41
Alignment explanation
Indices: 32266897--32267001 Score: 124
Period size: 41 Copynumber: 2.6 Consensus size: 41
32266887 TGATTCGGTA
* * * *
32266897 CACCGGCTTTTAGCCTGCTAGACTTATTGTCCG-A-AATGTAT
1 CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAAT-T-T
*
32266938 CACCGGCATTAAGCCTGCTAGACGTATAGTCTGAATAATTT
1 CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAATTT
*
32266979 CACCGGCATCAAGCCTGCTAGAC
1 CACCGGCATTAAGCCTGCTAGAC
32267002 ATTAAGTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
41 51 0.91
42 2 0.04
43 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.28
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACGTATAGTCCGAATAATTT
Found at i:32267010 original size:41 final size:41
Alignment explanation
Indices: 32266937--32267022 Score: 129
Period size: 41 Copynumber: 2.1 Consensus size: 41
32266927 CCGAAATGTA
*
32266937 TCACCGGCATTAAGCCTGCTAGACGTATAGTCTGAATAATT
1 TCACCGGCATCAAGCCTGCTAGACGTATAGTCTGAATAATT
* *
32266978 TCACCGGCATCAAGCCTGCTAGACAT-TAAGTCTGAATTATT
1 TCACCGGCATCAAGCCTGCTAGACGTAT-AGTCTGAATAATT
32267019 TCAC
1 TCAC
32267023 TGACAATAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 1 0.02
41 40 0.98
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (41 bp):
TCACCGGCATCAAGCCTGCTAGACGTATAGTCTGAATAATT
Found at i:32274107 original size:43 final size:43
Alignment explanation
Indices: 32274041--32274169 Score: 152
Period size: 43 Copynumber: 3.0 Consensus size: 43
32274031 GGCTCGTACA
* * *
32274041 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAACACAAATCG
* *
32274084 ATGCCACTGTCCTAGACAG-GGTCTTACACGTAAACACAAATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGTAAACACAAATCG
* * * * *
32274127 ATGCCAACGTCCCAAACGTGGTCTTACAGGAAAACACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAACACAAATCG
32274170 GAAATCCTAT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
42 1 0.01
43 70 0.97
44 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAAACACAAATCG
Found at i:32278483 original size:41 final size:40
Alignment explanation
Indices: 32278438--32278553 Score: 126
Period size: 41 Copynumber: 2.9 Consensus size: 40
32278428 TTGTATAAAA
*
32278438 CACCGGCATAAAGCCTGCTAGGCACAAAGCCTGA-TACATTT
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGATTA-A-TT
* * * *
32278479 CACCGACACAAAGCCTGCTAGACATAAAGTCTGAATTAATT
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTG-ATTAATT
* * *
32278520 CATCGGCATCAAGCCTGCTAGGCATTAAGCCTGA
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGA
32278554 AAATCTCAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
40 1 0.02
41 56 0.92
42 2 0.03
43 2 0.03
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.21
Consensus pattern (40 bp):
CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGATTAATT
Found at i:32278723 original size:64 final size:67
Alignment explanation
Indices: 32278599--32278751 Score: 197
Period size: 64 Copynumber: 2.3 Consensus size: 67
32278589 TACAACATTA
* * *
32278599 AAATTCAGTTCAAAGAA-TTTGTAACCTATATTCGAACCATACACATATGTATGTAAAATTCATA
1 AAATTCAGCTC-AAGAACTTTATAACCTATATTCGAA-CATACACATATGTATATAAAATTCATA
32278663 AATT
64 AATT
* * *
32278667 AAATTCAGCTCAAGAACTTTATAACCTATATTTG-A-AT-CACATATGTATATAAAATTCGTACA
1 AAATTCAGCTCAAGAACTTTATAACCTATATTCGAACATACACATATGTATATAAAATTCATAAA
32278729 TT
66 TT
*
32278731 AATTTCAGCTCAAGAACTTTA
1 AAATTCAGCTCAAGAACTTTA
32278752 AAATATATAT
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
64 44 0.57
65 2 0.03
67 6 0.08
68 25 0.32
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (67 bp):
AAATTCAGCTCAAGAACTTTATAACCTATATTCGAACATACACATATGTATATAAAATTCATAAA
TT
Found at i:32278899 original size:60 final size:60
Alignment explanation
Indices: 32278780--32278904 Score: 146
Period size: 60 Copynumber: 2.1 Consensus size: 60
32278770 ACCGTATGTG
* * * **
32278780 TATATATATATTTCATAATATTAAGTTCAACTCAAAGAACTTGTATCATACATTCAACTA
1 TATATATATAATTCATAATATTAAATTCAACTCAAAGAAATTAAATCATACATTCAACTA
* *
32278840 TATATATATAATTCATAACT-TTAAATTCAACTC-ATGAAATTAAATCTTACATTCGAACTA
1 TATATATATAATTCATAA-TATTAAATTCAACTCAAAGAAATTAAATCATACATTC-AACTA
*
32278900 CATAT
1 TATAT
32278905 CCATGTAAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
59 16 0.29
60 38 0.69
61 1 0.02
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.38
Consensus pattern (60 bp):
TATATATATAATTCATAATATTAAATTCAACTCAAAGAAATTAAATCATACATTCAACTA
Found at i:32283389 original size:83 final size:84
Alignment explanation
Indices: 32283300--32283777 Score: 383
Period size: 83 Copynumber: 5.6 Consensus size: 84
32283290 TGTAACTTCA
* *
32283300 GGAGATAGGATCTGTTTCTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
1 GGAGATAAGATCTGTTTCTTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGACTTGATGTGAT
32283364 CTGCTCCACTACTGCTTAG
66 CTGCTCCACTACTGCTTAG
* *
32283383 GGAGATAAGATCGGTTTCTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
1 GGAGATAAGATCTGTTTCTTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGACTTGATGTGAT
32283447 CTGCTCCACTACTGCTTAG
66 CTGCTCCACTACTGCTTAG
* * * * * * ** *
32283466 GGAGATAGGATCTATGAT-TTT-AATCCGCTCCACTGCAACTTTAGAGAGATAGGA-TTGGTTTT
1 GGAGATAAGATCTGT-TTCTTTCGATCTGCTCCACTACTGC-TTAGGGAGATAGGACTT-G----
* *
32283528 TTCTG-TCTGCTCCACTACTGCTTAG
59 ATGTGATCTGCTCCACTACTGCTTAG
* *
32283553 GGAGATAAGA-C---TTGTTGCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-AT
1 GGAGATAAGATCTGTTTCTTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA-CT----TGAT
* * *
32283613 TTGACCTGTTCCACTACTGCTTAG
61 GTGATCTGCTCCACTACTGCTTAG
* **** * *
32283637 GGAGATAGGATCTACCAGCTTT-GACCTGCTCCACTACTGCTTAGGGAGATAGGAC-TGGTGGCT
1 GGAGATAAGATCT-GTTTCTTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGACTTGAT-G--
* **
32283700 TAAATCTGCTTTACTACTGCTTAG
62 T-GATCTGCTCCACTACTGCTTAG
* **
32283724 GAAGATAAGAT-TCGCCGTC-TTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA
1 GGAGATAAGATCT-G-TTTCTTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA
32283778 TCTAACACCT
Statistics
Matches: 318, Mismatches: 48, Indels: 54
0.76 0.11 0.13
Matches are distributed among these distances:
82 2 0.01
83 129 0.41
84 54 0.17
85 2 0.01
86 5 0.02
87 89 0.28
88 34 0.11
89 3 0.01
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.32
Consensus pattern (84 bp):
GGAGATAAGATCTGTTTCTTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGACTTGATGTGAT
CTGCTCCACTACTGCTTAG
Found at i:32283577 original size:210 final size:210
Alignment explanation
Indices: 32283214--32283690 Score: 568
Period size: 210 Copynumber: 2.2 Consensus size: 210
32283204 TTGTAACTTC
* * * * ** * ** * *
32283214 AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAATATCTTTGTTTTTA
1 AGGGAGATAAGACTAGATGTGATCTGCTCCACTACTGCTT-AGGGAGATAGGATCTATGATTTTA
* ** *
32283279 ATCCGTTCTGCTGTAACTTCAGGAGATAGGATCTGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
65 ATCCGCTCCACTGCAACTTCAGGAGATAGGATCTGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
* **
32283344 GAGATAAGACTTGATGTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGGTTTC-T-TTCG-
130 GAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC--TACCATATTCGA
*
32283406 TCTGCTCCACTACTGCTT
193 CCTGCTCCACTACTGCTT
*
32283424 AGGGAGATAAGACTTGATGTGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTATGATTTTAA
1 AGGGAGATAAGACTAGATGTGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTATGATTTTAA
*
32283489 TCCGCTCCACTGCAACTTTAGAGAGATAGGAT-TGGTTT-TTTCTGTCTGCTCCACTACTGCTTA
66 TCCGCTCCACTGCAACTTCAG-GAGATAGGATCT-GTTTCTTTC-GTCTGCTCCACTACTGCTTA
* * *
32283552 GGGAGATAAGACTTGTTGCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATATTTGA
128 GGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATATTCGA
*
32283617 CCTGTTCCACTACTGCTT
193 CCTGCTCCACTACTGCTT
* * * *
32283635 AGGGAGATAGGATCTACCAGCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGA
1 AGGGAGATAAGA-CT---AGATGTGATCTGCTCCACTACTGCTTAGGGAGATAGGA
32283691 CTGGTGGCTT
Statistics
Matches: 228, Mismatches: 29, Indels: 15
0.84 0.11 0.06
Matches are distributed among these distances:
208 2 0.01
209 42 0.18
210 121 0.53
211 27 0.12
212 2 0.01
215 34 0.15
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (210 bp):
AGGGAGATAAGACTAGATGTGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTATGATTTTAA
TCCGCTCCACTGCAACTTCAGGAGATAGGATCTGTTTCTTTCGTCTGCTCCACTACTGCTTAGGG
AGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATATTCGACCT
GCTCCACTACTGCTT
Found at i:32283641 original size:44 final size:44
Alignment explanation
Indices: 32283324--32283802 Score: 236
Period size: 44 Copynumber: 11.2 Consensus size: 44
32283314 TTTCTTTCGT
* * * *
32283324 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT---TGATGTGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGATTTGAC
* ** *
32283364 CTGCTCCACTACTGCTTAGGGAGATAAGATCGGTTTC---TTTCG-T
1 CTGCTCCACTACTGCTTAGGGAGATAGGATC--TACCAGATTT-GAC
* * * *
32283407 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT---TGATGTGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGATTTGAC
* *
32283447 CTGCTCCACTACTGCTTAGGGAGATAGGATCTA--TGATTTTAATC
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGA-TTTGA-C
* ** * ****** *
32283491 C-GCTCCACTGCAACTTTAGAGAGATAGGAT-TGGTTTTTTCTG-T
1 CTGCTCCACTACTGC-TTAGGGAGATAGGATCTACCAGATT-TGAC
* * * *
32283534 CTGCTCCACTACTGCTTAGGGAGATAAGA-CT---TG-TTGCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGATT-TGAC
*
32283574 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATATTTGAC
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGATTTGAC
* *
32283618 CTGTTCCACTACTGCTTAGGGAGATAGGATCTACCAGCTTTGAC
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGATTTGAC
**** * ** *
32283662 CTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGATTTGAC
** * * * *
32283705 CTGCTTTACTACTGCTTAGGAAGATAAGAT-T-CGCCG-TCTTCGAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTAC-CAGAT-TT-GAC
* **
32283749 CTGCTCCACTACTGCTTAGGGAGATAGGATCTAACACCTTTGAC
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGATTTGAC
32283793 CTGCTCCACT
1 CTGCTCCACT
32283803 GTAACCTCAG
Statistics
Matches: 349, Mismatches: 56, Indels: 64
0.74 0.12 0.14
Matches are distributed among these distances:
39 4 0.01
40 91 0.26
41 5 0.01
42 5 0.01
43 96 0.28
44 139 0.40
45 8 0.02
46 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (44 bp):
CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGATTTGAC
Found at i:32283642 original size:127 final size:127
Alignment explanation
Indices: 32283323--32283778 Score: 437
Period size: 127 Copynumber: 3.6 Consensus size: 127
32283313 GTTTCTTTCG
* *
32283323 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT----TGATGTGATCTGCTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCAT-ATTTGACCTGCTCCACTACTGCTTAG
* * * *
32283383 GGAGATAAGATCGGTTTCTTTC-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
65 GGAGATAGGATTGGTTT-TTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGTTGCGA
* ** * * **
32283446 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTATGAT-TTTAATCC-GCTCCACTGCAACTTTA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATATTTGA-CCTGCTCCACTACTGC-TTA
*
32283509 GAGAGATAGGATTGGTTTTTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGTTGCGA
64 GGGAGATAGGATTGGTTTTTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGTTGCGA
* *
32283573 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATATTTGACCTGTTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATATTTGACCTGCTCCACTACTGCTTAGG
****** * * * *
32283638 GAGATAGGATCTACCAGCTT-TGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTA
66 GAGATAGGAT-TGGTTTTTTCTG-TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGTTGC---
*
32283702 AA
126 GA
** * * * * * *
32283704 TCTGCTTTACTACTGCTTAGGAAGATAAGAT-TCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACCATATTTGACCTGCTCCACTACTGCTTAG
32283768 GGAGATAGGAT
65 GGAGATAGGAT
32283779 CTAACACCTT
Statistics
Matches: 276, Mismatches: 41, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
123 29 0.11
124 2 0.01
126 17 0.06
127 112 0.41
128 51 0.18
130 1 0.00
131 64 0.23
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (127 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATATTTGACCTGCTCCACTACTGCTTAGG
GAGATAGGATTGGTTTTTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGTTGCGA
Found at i:32283852 original size:46 final size:45
Alignment explanation
Indices: 32283796--32284220 Score: 257
Period size: 44 Copynumber: 9.6 Consensus size: 45
32283786 CTTTGACCTG
* * *
32283796 CTCCACTGTAACCTCAGGGAGGTAAGATCTGAAATTCTTCAGTTTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTCTTCAATCTA
* * * *
32283842 CTCCACTGTAACCTCAAGGAGATAAGACCTG-A---TGCGATCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAATTCTTCAATCTA
* * * * ** **
32283883 CTCTACTGTAACTTCAGAGAGATGAGATCCTTTATT-TT-AATCCG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-CTGAATTCTTCAATCTA
* * * * * *
32283927 CTCCACTGTAACTTCAGGGAGATAGGAT-T-ACTAGCTCCAATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAT-TCTTCAATCTA
**
32283971 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTCTTCAATCTA
* * * *
32284017 CTCCACTGTAACCTCAGGGAGATAAGA-CTTGCA-TATTCAACCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATC-TGAATTCTTCAATCTA
* * * * * * * *
32284061 CCCCACTATAACTTCAGGGAGATAAGGTTTG--TGGCTTCGATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAT-TCTTCAATCTA
* * ***
32284105 CTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTCTTCAATCTA
* * * * *
32284151 CTCTACTGTAACCTCAGGGAGATAAGA-CTTGCA-TATTCAACCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATC-TGAATTCTTCAATCTA
* *
32284195 CCCCACTGTAACTTCAGGGAGATAAG
1 CTCCACTGTAACCTCAGGGAGATAAG
32284221 GCTTTATGTG
Statistics
Matches: 287, Mismatches: 74, Indels: 38
0.72 0.19 0.10
Matches are distributed among these distances:
41 28 0.10
42 3 0.01
43 2 0.01
44 149 0.52
45 6 0.02
46 96 0.33
47 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (45 bp):
CTCCACTGTAACCTCAGGGAGATAAGATCTGAATTCTTCAATCTA
Found at i:32284219 original size:134 final size:135
Alignment explanation
Indices: 32283929--32284221 Score: 482
Period size: 134 Copynumber: 2.2 Consensus size: 135
32283919 TTAATCCGCT
32283929 CCACTGTAACTTCAGGGAGAT-AGGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAGA
1 CCACTGTAACTTCAGGGAGATAAGGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAGA
32283993 TAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAAC
66 TAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAAC
32284058 CTGCC
131 CTGCC
* ** * * * * *
32284063 CCACTATAACTTCAGGGAGATAAGG-TTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGA
1 CCACTGTAACTTCAGGGAGATAAGGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAGA
* *
32284127 TAAGATCTGAAATTCTTTGGTCTACTCTACTGTAACCTCAGGGAGATAAGACTTGCATATTCAAC
66 TAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAAC
32284192 CTGCC
131 CTGCC
32284197 CCACTGTAACTTCAGGGAGATAAGG
1 CCACTGTAACTTCAGGGAGATAAGG
32284222 CTTTATGTGA
Statistics
Matches: 147, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
134 144 0.98
135 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (135 bp):
CCACTGTAACTTCAGGGAGATAAGGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAGA
TAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAAC
CTGCC
Found at i:32284345 original size:43 final size:44
Alignment explanation
Indices: 32284282--32284395 Score: 131
Period size: 44 Copynumber: 2.6 Consensus size: 44
32284272 TTAATCCGCG
* * * * * *
32284282 CCACTATAACTTCAGGGAGATAGGAT-AGTGTCCTCGATCTGCT
1 CCACTGTAACCTCAGGGAGATAAGATCACTGGCCTCAATCTGCT
* * * *
32284325 CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCGTCAATCTGCT
1 CCACTGTAACCTCAGGGAGATAAGATCACTGGCCTCAATCTGCT
32284369 CCACTGTAACCTCAGGGAGATAAGATC
1 CCACTGTAACCTCAGGGAGATAAGATC
32284396 TGAAATATTC
Statistics
Matches: 58, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
43 21 0.36
44 37 0.64
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (44 bp):
CCACTGTAACCTCAGGGAGATAAGATCACTGGCCTCAATCTGCT
Found at i:32286602 original size:6 final size:6
Alignment explanation
Indices: 32286593--32286697 Score: 65
Period size: 6 Copynumber: 17.5 Consensus size: 6
32286583 TTTTTCTCAG
* * * * *
32286593 TTTCAT TTTCAT TTTCAT TTTGAT TTTGAT TTTGAT TTT-TT TCCTTCTT
1 TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT T--TTCAT
* ** *
32286642 TCTTCTT TTTGTTT TTTTAT TTT--T -TTCAT TTTCAT TTTCAT TTTCAT
1 T-TTCAT TTT-CAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT
32286689 TTTCAT TTT
1 TTTCAT TTT
32286698 GACTTTGATT
Statistics
Matches: 88, Mismatches: 4, Indels: 14
0.83 0.04 0.13
Matches are distributed among these distances:
3 2 0.02
4 1 0.01
5 3 0.03
6 65 0.74
7 14 0.16
8 3 0.03
ACGTcount: A:0.11, C:0.12, G:0.04, T:0.72
Consensus pattern (6 bp):
TTTCAT
Found at i:32286624 original size:18 final size:18
Alignment explanation
Indices: 32286597--32286715 Score: 67
Period size: 18 Copynumber: 6.9 Consensus size: 18
32286587 TCTCAGTTTC
32286597 ATTTTCATTTTCATTTTG
1 ATTTTCATTTTCATTTTG
* *
32286615 ATTTTGATTTTGATTTT-
1 ATTTTCATTTTCATTTTG
* * *
32286632 TTTCCTTCTTTCTTCTTTTTG
1 ATT--TTCATT-TTCATTTTG
32286653 --TTT--TTTT-ATTTT-
1 ATTTTCATTTTCATTTTG
*
32286665 --TTTCATTTTCATTTTC
1 ATTTTCATTTTCATTTTG
32286681 ATTTTCATTTTCATTTTG
1 ATTTTCATTTTCATTTTG
* * *
32286699 ACTTTGATTTTGATTTT
1 ATTTTCATTTTCATTTT
32286716 TCTTTTTTCT
Statistics
Matches: 79, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
12 3 0.04
13 4 0.05
14 6 0.08
15 7 0.09
17 4 0.05
18 44 0.56
19 5 0.06
20 6 0.08
ACGTcount: A:0.13, C:0.11, G:0.06, T:0.71
Consensus pattern (18 bp):
ATTTTCATTTTCATTTTG
Found at i:32286715 original size:6 final size:6
Alignment explanation
Indices: 32286664--32286697 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
32286654 TTTTTTATTT
32286664 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTT
32286698 GACTTTGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTCA
Found at i:32286719 original size:78 final size:77
Alignment explanation
Indices: 32286583--32286726 Score: 209
Period size: 78 Copynumber: 1.8 Consensus size: 77
32286573 TTCTTCTTTC
* *
32286583 TTTTTCTCAGTTTCATTTTCATTTTCATTTTGATTTTGATTTTGATTTTTTTCCTTCTTTCTTCT
1 TTTTTCTCAGTTTCATTTTCATTTTCATTTTCATTTTGACTTTGATTTTTTT-CTTCTTTCTTCT
32286648 TTTTGTTTTTTTA
65 TTTTGTTTTTTTA
* * *
32286661 TTTTTTTCATTTTCATTTTCATTTTCATTTTCATTTTGACTTTGATTTTGATTT-TTCTTTTTTC
1 TTTTTCTCAGTTTCATTTTCATTTTCATTTTCATTTTGACTTTGATTTT--TTTCTTCTTTCTTC
32286725 TT
64 TT
32286727 CACTTTTTTG
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
78 56 0.95
80 3 0.05
ACGTcount: A:0.11, C:0.12, G:0.06, T:0.71
Consensus pattern (77 bp):
TTTTTCTCAGTTTCATTTTCATTTTCATTTTCATTTTGACTTTGATTTTTTTCTTCTTTCTTCTT
TTTGTTTTTTTA
Found at i:32294024 original size:11 final size:11
Alignment explanation
Indices: 32294008--32294032 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32293998 CATTATTCAT
32294008 TAAATAAAATA
1 TAAATAAAATA
32294019 TAAATAAAATA
1 TAAATAAAATA
32294030 TAA
1 TAA
32294033 CTATAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAAATAAAATA
Found at i:32294068 original size:21 final size:22
Alignment explanation
Indices: 32294034--32294075 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
32294024 AAAATATAAC
*
32294034 TATAAATAATATAA-TTAAGAT
1 TATAAATAACATAATTTAAGAT
*
32294055 TATAAATAGCATAATTTAAGA
1 TATAAATAACATAATTTAAGA
32294076 GGAAAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (22 bp):
TATAAATAACATAATTTAAGAT
Found at i:32302419 original size:6 final size:6
Alignment explanation
Indices: 32302408--32302477 Score: 133
Period size: 6 Copynumber: 11.8 Consensus size: 6
32302398 CCATTTCTAC
32302408 CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT
1 CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT
32302456 CAAAAT CAAAAT CAAAAT -AAAA
1 CAAAAT CAAAAT CAAAAT CAAAA
32302478 CTTATGTACA
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 4 0.06
6 60 0.94
ACGTcount: A:0.69, C:0.16, G:0.00, T:0.16
Consensus pattern (6 bp):
CAAAAT
Found at i:32306161 original size:21 final size:20
Alignment explanation
Indices: 32306114--32306166 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
32306104 ACCATTGTTT
*
32306114 CTAATCTCACTGCTACAATA
1 CTAATCTCACCGCTACAATA
* *
32306134 TTCAATCTCACCGCTACAGTAA
1 CT-AATCTCACCGCTACAAT-A
32306156 CTAATCTCACC
1 CTAATCTCACC
32306167 ATCACCACTG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 1 0.04
21 24 0.89
22 2 0.07
ACGTcount: A:0.32, C:0.34, G:0.06, T:0.28
Consensus pattern (20 bp):
CTAATCTCACCGCTACAATA
Found at i:32307306 original size:21 final size:20
Alignment explanation
Indices: 32307273--32307317 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
32307263 ATAAACTAAT
* *
32307273 AAAATATAAAATTTATTTTA
1 AAAATATAAAATTAAATTTA
*
32307293 AAAAGTATATAATTAAATTTA
1 AAAA-TATAAAATTAAATTTA
32307314 AAAA
1 AAAA
32307318 AAAGAGTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
AAAATATAAAATTAAATTTA
Found at i:32313854 original size:103 final size:103
Alignment explanation
Indices: 32313712--32313917 Score: 331
Period size: 103 Copynumber: 2.0 Consensus size: 103
32313702 TATCTATAGA
* * * *
32313712 TATATAAAGAAGGGTAAATTATAAAAGTAGTCATTTTTGTTTGTCTCAGATTACATTTTAGTTAT
1 TATATAAAGAAGGGTAAATTATAAAAATAGTCACTTTTGTTTGCCTCAGATTACATTTTAGTCAT
*
32313777 TTATGCTTGAAATGTTATATTTTAGTTACTTACGTTAT
66 TTATGCTTGAAATGTTATATTTTAGTCACTTACGTTAT
*
32313815 TATATAAAGAATGGTAAATTATAAAAATAGTCACTTTTGTTTGCCTCAGATTACATTTTAGTCAT
1 TATATAAAGAAGGGTAAATTATAAAAATAGTCACTTTTGTTTGCCTCAGATTACATTTTAGTCAT
* * *
32313880 TTATGTTTGAAATGTTATGTTTTAGTCACTTATGTTAT
66 TTATGCTTGAAATGTTATATTTTAGTCACTTACGTTAT
32313918 CGTTTTATTA
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
103 94 1.00
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.46
Consensus pattern (103 bp):
TATATAAAGAAGGGTAAATTATAAAAATAGTCACTTTTGTTTGCCTCAGATTACATTTTAGTCAT
TTATGCTTGAAATGTTATATTTTAGTCACTTACGTTAT
Found at i:32314923 original size:3 final size:3
Alignment explanation
Indices: 32314909--32314951 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
32314899 ACGACTGAGG
*
32314909 AGA AGG AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
32314952 ATGGACGCAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:32317559 original size:14 final size:14
Alignment explanation
Indices: 32317540--32317569 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32317530 AAATTAAATT
32317540 TTGAGTTAATCGAA
1 TTGAGTTAATCGAA
*
32317554 TTGAGTTATTCGAA
1 TTGAGTTAATCGAA
32317568 TT
1 TT
32317570 ATTTGAGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (14 bp):
TTGAGTTAATCGAA
Found at i:32317748 original size:19 final size:19
Alignment explanation
Indices: 32317726--32317777 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
32317716 AAAAATTACA
32317726 AAAAATT-AAAATAATTTTC
1 AAAAATTCAAAATAA-TTTC
*
32317745 AAAATTTCAAAATAATTTC
1 AAAAATTCAAAATAATTTC
*
32317764 TAAAATTCAAAATA
1 AAAAATTCAAAATA
32317778 TCTATAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 22 0.76
20 7 0.24
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTC
Found at i:32317756 original size:20 final size:20
Alignment explanation
Indices: 32317733--32317796 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
32317723 ACAAAAAATT
32317733 AAAATAATTTTCAAAATTTC
1 AAAATAATTTTCAAAATTTC
32317753 AAAATAA-TTTCTAAAA-TTC
1 AAAATAATTTTC-AAAATTTC
* *
32317772 AAAAT-ATCTATAAAAATTTC
1 AAAATAAT-TTTCAAAATTTC
32317792 AAAAT
1 AAAAT
32317797 TTATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
18 1 0.03
19 16 0.42
20 21 0.55
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAATAATTTTCAAAATTTC
Found at i:32317772 original size:27 final size:27
Alignment explanation
Indices: 32317742--32317797 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
32317732 TAAAATAATT
*
32317742 TTCAAAATTTC-A-AAATAATTTCTAAAA
1 TTCAAAATATCTATAAA-AATTTC-AAAA
32317769 TTCAAAATATCTATAAAAATTTCAAAA
1 TTCAAAATATCTATAAAAATTTCAAAA
32317796 TT
1 TT
32317798 TATATTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 16 0.62
28 7 0.27
29 3 0.12
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.38
Consensus pattern (27 bp):
TTCAAAATATCTATAAAAATTTCAAAA
Found at i:32323311 original size:8 final size:8
Alignment explanation
Indices: 32323298--32323346 Score: 54
Period size: 7 Copynumber: 6.8 Consensus size: 8
32323288 AGAAGTGATG
32323298 TGAAAAAA
1 TGAAAAAA
*
32323306 TGAAAAGA
1 TGAAAAAA
32323314 TG--AAAA
1 TGAAAAAA
32323320 TG-AAAAA
1 TGAAAAAA
32323327 TG-AAAAA
1 TGAAAAAA
32323334 TGAAAAAA
1 TGAAAAAA
32323342 T-AAAA
1 TGAAAA
32323347 TGGAGAGGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
6 5 0.14
7 17 0.46
8 15 0.41
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (8 bp):
TGAAAAAA
Found at i:32323326 original size:7 final size:7
Alignment explanation
Indices: 32323301--32323340 Score: 64
Period size: 7 Copynumber: 5.7 Consensus size: 7
32323291 AGTGATGTGA
32323301 AAAAATG
1 AAAAATG
32323308 AAAAGATG
1 AAAA-ATG
32323316 -AAAATG
1 AAAAATG
32323322 AAAAATG
1 AAAAATG
32323329 AAAAATG
1 AAAAATG
32323336 AAAAA
1 AAAAA
32323341 ATAAAATGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 3 0.10
7 25 0.81
8 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:32323346 original size:20 final size:21
Alignment explanation
Indices: 32323300--32323348 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
32323290 AAGTGATGTG
32323300 AAAAAATGAAAAGATGAAAAT
1 AAAAAATGAAAAGATGAAAAT
*
32323321 GAAAAATGAAAA-ATGAAAA-
1 AAAAAATGAAAAGATGAAAAT
32323340 AATAAAATG
1 AA-AAAATG
32323349 GAGAGGCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.04
20 13 0.52
21 11 0.44
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (21 bp):
AAAAAATGAAAAGATGAAAAT
Found at i:32323346 original size:21 final size:21
Alignment explanation
Indices: 32323301--32323339 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
32323291 AGTGATGTGA
32323301 AAAAATGAAAAGATGAAAATG
1 AAAAATGAAAAGATGAAAATG
32323322 AAAAATGAAAA-ATGAAAA
1 AAAAATGAAAAGATGAAAA
32323340 AATAAAATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (21 bp):
AAAAATGAAAAGATGAAAATG
Found at i:32324725 original size:44 final size:45
Alignment explanation
Indices: 32324570--32325139 Score: 265
Period size: 44 Copynumber: 13.0 Consensus size: 45
32324560 ACAGCGAAGC
* * * *
32324570 AGATCGAAGA-TACAGATCTTATCTCCCTAAG-CAGTAGTGGAGC
1 AGATTGAAGATTACAGATCTTATCTCCCTAGGTCAGCAGTGGAGT
* * * * * *
32324613 AGATCGAAGATTGCAAATTTTACCTCCCTGAGGTTA-CAGTGGAGT
1 AGATTGAAGATTACAGATCTTATCTCCCT-AGGTCAGCAGTGGAGT
* * * *
32324658 ATATTGAAG---CCAGTAACTCTATCTCCCT-GGTCAGCAGTGGAAT
1 AGATTGAAGATTACAG-ATCT-TATCTCCCTAGGTCAGCAGTGGAGT
* * *
32324701 AGATTGAAGATTACAGATCTTATCTCCCTAAG-CAGTAGTGGAGC
1 AGATTGAAGATTACAGATCTTATCTCCCTAGGTCAGCAGTGGAGT
** **** * * *
32324745 AGATCAAAGATGGTGGATTTTAGCTCCCTAAGGTTA-CAGTGGAGT
1 AGATTGAAGATTACAGATCTTATCTCCCT-AGGTCAGCAGTGGAGT
** * * * *
32324790 TCATTGAAGCCAATA-A-TTC-TATCTCCCTGGGT-AGCAGTGGAAT
1 AGATTGAAG--ATTACAGATCTTATCTCCCTAGGTCAGCAGTGGAGT
* * *
32324833 AGATTGAAGATTACAGATCTTATCTCCCTA-GACAGTAGTTGAGT
1 AGATTGAAGATTACAGATCTTATCTCCCTAGGTCAGCAGTGGAGT
* * * * * *
32324877 AGATCGAAGATGACAGATTTTACCTCACTGAGGTTA-CAGTGGAGT
1 AGATTGAAGATTACAGATCTTATCTCCCT-AGGTCAGCAGTGGAGT
* * * * *
32324922 ACATTGAAGCCAGTA-A-TTC-TATCTCCCT-GGGCAGCAGTGGAAT
1 AGATTGAAG--ATTACAGATCTTATCTCCCTAGGTCAGCAGTGGAGT
* * *
32324965 AGATTGAAGATTATAGATCTTATCTCCCTA-GACAGTAGTGGAGT
1 AGATTGAAGATTACAGATCTTATCTCCCTAGGTCAGCAGTGGAGT
* * * * * *
32325009 AGATCGAAGATAACAAATTTTACCTCCCTGAGGTTA-CAGTGGAGT
1 AGATTGAAGATTACAGATCTTATCTCCCT-AGGTCAGCAGTGGAGT
* * * * * *
32325054 ACATTGAAGCCAGTA-A-TTC-TATCTCACT-GGGCAGCAGTGGAAT
1 AGATTGAAG--ATTACAGATCTTATCTCCCTAGGTCAGCAGTGGAGT
* * * *
32325097 AAATTGAAAATTACAGATCTTATCTCCCTAAG-CAGTAGTGGAG
1 AGATTGAAGATTACAGATCTTATCTCCCTAGGTCAGCAGTGGAG
32325140 CAAATCAAAG
Statistics
Matches: 378, Mismatches: 112, Indels: 73
0.67 0.20 0.13
Matches are distributed among these distances:
41 9 0.02
42 16 0.04
43 84 0.22
44 184 0.49
45 69 0.18
46 11 0.03
47 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (45 bp):
AGATTGAAGATTACAGATCTTATCTCCCTAGGTCAGCAGTGGAGT
Found at i:32324817 original size:132 final size:132
Alignment explanation
Indices: 32324570--32325249 Score: 1015
Period size: 132 Copynumber: 5.2 Consensus size: 132
32324560 ACAGCGAAGC
* * *
32324570 AGATCGAAGA-TACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAAATTTT
1 AGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTT
* * *
32324634 ACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGTAACTCTATCTCCCTGGTCAGCAGTGGA
66 ACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGA
32324699 AT
131 AT
* **
32324701 AGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTT
1 AGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTT
* * * * *
32324766 AGCTCCCTAAGGTTACAGTGGAGTTCATTGAAGCCAATAATTCTATCTCCCTGGGTAGCAGTGGA
66 ACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGA
32324831 AT
131 AT
* * *
32324833 AGATTGAAGATTACAGATCTTATCTCCCT-AGACAGTAGTTGAGTAGATCGAAGATGACAGATTT
1 AGATTGAAGATTACAGATCTTATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAGATGGCAGATTT
*
32324897 TACCTCACTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
65 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
32324962 AAT
130 AAT
* * ** *
32324965 AGATTGAAGATTATAGATCTTATCTCCCT-AGACAGTAGTGGAGTAGATCGAAGATAACAAATTT
1 AGATTGAAGATTACAGATCTTATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAGATGGCAGATTT
*
32325029 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCACTGGGCAGCAGTGG
65 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
32325094 AAT
130 AAT
* * * * **
32325097 AAATTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGATGGTGGATTTT
1 AGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTT
* * *
32325162 ACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTAGGCAACAGTGGA
66 ACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGA
32325227 AT
131 AT
*
32325229 AGATTGAAGATGACAGATCTT
1 AGATTGAAGATTACAGATCTT
32325250 GTCTTCATGT
Statistics
Matches: 496, Mismatches: 50, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
131 11 0.02
132 483 0.97
133 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (132 bp):
AGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTT
ACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGA
AT
Found at i:32325297 original size:44 final size:44
Alignment explanation
Indices: 32325228--32325460 Score: 344
Period size: 44 Copynumber: 5.3 Consensus size: 44
32325218 AACAGTGGAA
* * *
32325228 TAGATTGAAGATGACAGATCTTGTCTTCATGTATTGGCGTGAAG
1 TAGATCGAAGATAACTGATCTTGTCTTCATGTATTGGCGTGAAG
*
32325272 TAAATCGAAGATAACTGATCTTGTCTTCATGTATTGGCGTGAAG
1 TAGATCGAAGATAACTGATCTTGTCTTCATGTATTGGCGTGAAG
*
32325316 TAGATCGAAGATAACTGATCTTGTCTTCATGTATTGGTGTGAAG
1 TAGATCGAAGATAACTGATCTTGTCTTCATGTATTGGCGTGAAG
* *
32325360 TAGATCGGAGA-AAGCAGATCTTGTC-TCATGTATTGGCGTGAAG
1 TAGATCGAAGATAA-CTGATCTTGTCTTCATGTATTGGCGTGAAG
* * *
32325403 TAGATCGATGATAACTGATCTTGTCTTCCTGTATTGGCAGTAAAG
1 TAGATCGAAGATAACTGATCTTGTCTTCATGTATTGGC-GTGAAG
32325448 TAGATCGAAGATA
1 TAGATCGAAGATA
32325461 TAAGTCTTAT
Statistics
Matches: 170, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
43 38 0.22
44 115 0.68
45 17 0.10
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (44 bp):
TAGATCGAAGATAACTGATCTTGTCTTCATGTATTGGCGTGAAG
Found at i:32326110 original size:22 final size:22
Alignment explanation
Indices: 32326085--32326130 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
32326075 TCCGCAAGCG
32326085 CCGCACATCGCGCCCGTCGCTC
1 CCGCACATCGCGCCCGTCGCTC
**
32326107 CCGCACATCGCGCTTGTCGCTC
1 CCGCACATCGCGCCCGTCGCTC
32326129 CC
1 CC
32326131 ACGCGTCGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.09, C:0.52, G:0.22, T:0.17
Consensus pattern (22 bp):
CCGCACATCGCGCCCGTCGCTC
Found at i:32326139 original size:22 final size:22
Alignment explanation
Indices: 32326088--32326141 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
32326078 GCAAGCGCCG
** *
32326088 CACATCGCGCCCGTCGCTCCCG
1 CACATCGCGCTTGTCGCTCCCA
32326110 CACATCGCGCTTGTCGCTCCCA
1 CACATCGCGCTTGTCGCTCCCA
* *
32326132 CGCGTCGCGC
1 CACATCGCGC
32326142 GCACTCAACA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.09, C:0.50, G:0.24, T:0.17
Consensus pattern (22 bp):
CACATCGCGCTTGTCGCTCCCA
Found at i:32327449 original size:22 final size:23
Alignment explanation
Indices: 32327400--32327455 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
32327390 ATAATATACA
32327400 TATACATATTTTCATGTTTTACC
1 TATACATATTTTCATGTTTTACC
* *
32327423 AATACATATTTTCATG-TTTACT
1 TATACATATTTTCATGTTTTACC
32327445 TATACAT-TTTT
1 TATACATATTTT
32327456 ATTTCTGTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 4 0.13
22 11 0.37
23 15 0.50
ACGTcount: A:0.29, C:0.14, G:0.04, T:0.54
Consensus pattern (23 bp):
TATACATATTTTCATGTTTTACC
Found at i:32336023 original size:3 final size:3
Alignment explanation
Indices: 32336005--32336073 Score: 63
Period size: 3 Copynumber: 24.0 Consensus size: 3
32335995 CATTAAATTA
* * *
32336005 ATT ATT -TT AAT ATT ATT ATT ACT ATT A-T ATT A-C ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
32336050 ACT ACT ACT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT
32336074 TCCTCATTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
2 5 0.09
3 50 0.91
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:32336068 original size:37 final size:38
Alignment explanation
Indices: 32335986--32336069 Score: 93
Period size: 37 Copynumber: 2.3 Consensus size: 38
32335976 GTTATTTTAG
* *
32335986 TTATT-TTATCATTAAATTAATTATTTTAATATTATTA
1 TTATTATTATCATTAAATTAATTATTTTAATACTACTA
* * *
32336023 TTACTATTAT-ATTACATT-ATTATTATTACTACTACTA
1 TTATTATTATCATTAAATTAATTATT-TTAATACTACTA
32336060 TTATTATTAT
1 TTATTATTAT
32336070 TATTTCCTCA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
36 6 0.15
37 29 0.74
38 4 0.10
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (38 bp):
TTATTATTATCATTAAATTAATTATTTTAATACTACTA
Found at i:32340162 original size:17 final size:17
Alignment explanation
Indices: 32340137--32340179 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
32340127 ATCTTCATTG
*
32340137 AATCCCTAAAATCTTCA
1 AATCTCTAAAATCTTCA
*
32340154 AATCTCT-AAATCTTGA
1 AATCTCTAAAATCTTCA
32340170 AATCTCTAAA
1 AATCTCTAAA
32340180 TCGTTAGCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.42, C:0.23, G:0.02, T:0.33
Consensus pattern (17 bp):
AATCTCTAAAATCTTCA
Found at i:32340166 original size:16 final size:16
Alignment explanation
Indices: 32340145--32340181 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
32340135 TGAATCCCTA
32340145 AAATCTTCAAATCTCT
1 AAATCTTCAAATCTCT
*
32340161 AAATCTTGAAATCTCT
1 AAATCTTCAAATCTCT
32340177 AAATC
1 AAATC
32340182 GTTAGCATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.35
Consensus pattern (16 bp):
AAATCTTCAAATCTCT
Found at i:32341328 original size:51 final size:51
Alignment explanation
Indices: 32341273--32341372 Score: 164
Period size: 51 Copynumber: 2.0 Consensus size: 51
32341263 GTGAAGTTGC
* * *
32341273 TGCTGATGAATATGTTGGTGATGTTGCAACATCAGATGGAGTGGATAATGT
1 TGCTGATGAATATGCTGGTGATGTTGCAACATCAGATAGACTGGATAATGT
*
32341324 TGCTGATGAATATGCTGGTGATTTTGCAACATCAGATAGACTGGATAAT
1 TGCTGATGAATATGCTGGTGATGTTGCAACATCAGATAGACTGGATAAT
32341373 ATTGATGTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.29, C:0.10, G:0.28, T:0.33
Consensus pattern (51 bp):
TGCTGATGAATATGCTGGTGATGTTGCAACATCAGATAGACTGGATAATGT
Found at i:32352485 original size:25 final size:25
Alignment explanation
Indices: 32352451--32352501 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
32352441 CTGATCGAGA
32352451 AAGAGCAACAAATTTACGTGAACCC
1 AAGAGCAACAAATTTACGTGAACCC
*
32352476 AAGAGCAACAATTTTACGTGAACCC
1 AAGAGCAACAAATTTACGTGAACCC
32352501 A
1 A
32352502 GTCACTGAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.43, C:0.24, G:0.16, T:0.18
Consensus pattern (25 bp):
AAGAGCAACAAATTTACGTGAACCC
Found at i:32358250 original size:5 final size:5
Alignment explanation
Indices: 32358240--32358286 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
32358230 AAAAATTACA
** *
32358240 TATTT TATTT TATTTT TATTT T-TTT CCTTC TATTT TATTT TATTT TA
1 TATTT TATTT TA-TTT TATTT TATTT TATTT TATTT TATTT TATTT TA
32358287 CAGGTAGACC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
4 3 0.09
5 27 0.77
6 5 0.14
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (5 bp):
TATTT
Found at i:32362330 original size:18 final size:19
Alignment explanation
Indices: 32362307--32362344 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
32362297 ATGTCTCAAA
32362307 TATATACAAA-ATATACTT
1 TATATACAAAGATATACTT
32362325 TATATACAAAGATATACTT
1 TATATACAAAGATATACTT
32362344 T
1 T
32362345 TTCATAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (19 bp):
TATATACAAAGATATACTT
Found at i:32366454 original size:24 final size:23
Alignment explanation
Indices: 32366427--32366471 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
32366417 ATAATAATTT
32366427 TTTTTGAATAAAATATTTTTTATA
1 TTTTTGAAT-AAATATTTTTTATA
* *
32366451 TTTTTTAATAAATTTTTTTTA
1 TTTTTGAATAAATATTTTTTA
32366472 AAAAATACGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (23 bp):
TTTTTGAATAAATATTTTTTATA
Found at i:32366562 original size:27 final size:27
Alignment explanation
Indices: 32366532--32366598 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
32366522 CCTATCAGGT
32366532 AGGCGCCAATGAAGGTGCCTCACAGAG
1 AGGCGCCAATGAAGGTGCCTCACAGAG
* *
32366559 AGGCGCCAAAGAAGGTGCCTCATAGAG
1 AGGCGCCAATGAAGGTGCCTCACAGAG
32366586 AGGCGCCAATGAA
1 AGGCGCCAATGAA
32366599 TATTGTAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.33, C:0.24, G:0.33, T:0.10
Consensus pattern (27 bp):
AGGCGCCAATGAAGGTGCCTCACAGAG
Found at i:32366693 original size:21 final size:24
Alignment explanation
Indices: 32366661--32366809 Score: 157
Period size: 27 Copynumber: 6.1 Consensus size: 24
32366651 ATAGTTTTGG
*
32366661 AATAGTATTTTGTATGAATATTGT
1 AATATTATTTTGTATGAATATTGT
*
32366685 -A-ATT-TTTTGAATGAATATTGT
1 AATATTATTTTGTATGAATATTGT
32366706 AATATTATAATTTTGTATGAATATTGT
1 AATA-T-T-ATTTTGTATGAATATTGT
32366733 -A-ATT-TTTTGTATGAATATTGT
1 AATATTATTTTGTATGAATATTGT
32366754 AATATTATAATTTTGTATGAATATTGT
1 AATA-T-T-ATTTTGTATGAATATTGT
*
32366781 AATATTGTAATTTGTATGAATATTGT
1 AATA-T-TATTTTGTATGAATATTGT
32366807 AAT
1 AAT
32366810 GTCGGGATAT
Statistics
Matches: 108, Mismatches: 5, Indels: 22
0.80 0.04 0.16
Matches are distributed among these distances:
21 33 0.31
22 4 0.04
23 4 0.04
24 3 0.03
25 3 0.03
26 21 0.19
27 40 0.37
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (24 bp):
AATATTATTTTGTATGAATATTGT
Done.