Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 95 of 208
Found at i:32366711 original size:8 final size:8
Alignment explanation
Indices: 32366698--32366835 Score: 59
Period size: 8 Copynumber: 16.4 Consensus size: 8
32366688 TTTTTGAATG
32366698 AATATTGT
1 AATATTGT
*
32366706 AATATTAT
1 AATATTGT
*
32366714 AATTTTGTAT
1 AATATTG--T
32366724 GAATATTGT
1 -AATATTGT
*
32366733 AAT-TTTT
1 AATATTGT
**
32366740 TGTA-TG-
1 AATATTGT
32366746 AATATTGT
1 AATATTGT
*
32366754 AATATTAT
1 AATATTGT
*
32366762 AATTTTGTAT
1 AATATTG--T
32366772 GAATATTGT
1 -AATATTGT
32366781 AATATTGT
1 AATATTGT
32366789 AAT-TTGTAT
1 AATATTG--T
32366798 GAATATTGT
1 -AATATTGT
* * *
32366807 AATGTCGGG
1 AATAT-TGT
32366816 ATATATTGT
1 A-ATATTGT
32366825 AATATTGT
1 AATATTGT
32366833 AAT
1 AAT
32366836 TTTTTGTATG
Statistics
Matches: 95, Mismatches: 20, Indels: 30
0.66 0.14 0.21
Matches are distributed among these distances:
6 2 0.02
7 10 0.11
8 52 0.55
9 8 0.08
10 8 0.08
11 15 0.16
ACGTcount: A:0.35, C:0.01, G:0.14, T:0.50
Consensus pattern (8 bp):
AATATTGT
Found at i:32366714 original size:61 final size:64
Alignment explanation
Indices: 32366595--32366756 Score: 174
Period size: 61 Copynumber: 2.5 Consensus size: 64
32366585 GAGGCGCCAA
* * *
32366595 TGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAGTTTTG
1 TGAATA-TGTAATTTTGTATGAATATTGTAATTATTTTAGAATGAAATTTGTATTTATAATTTTG
32366660 -GAATA-GT-ATTTTGTATGAATATTGTAATT-TTTT-GAATG-AATATTGTAATATTATAATTT
1 TGAATATGTAATTTTGTATGAATATTGTAATTATTTTAGAATGAAAT-TTGT-AT-TTATAATTT
32366719 TG
63 TG
32366721 TATGAATATTGTAATTTTTTGTATGAATATTGTAAT
1 --TGAATA-TGTAA--TTTTGTATGAATATTGTAAT
32366757 ATTATAATTT
Statistics
Matches: 83, Mismatches: 3, Indels: 18
0.80 0.03 0.17
Matches are distributed among these distances:
58 3 0.04
59 7 0.08
60 6 0.07
61 32 0.39
62 2 0.02
64 10 0.12
66 2 0.02
67 1 0.01
69 20 0.24
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (64 bp):
TGAATATGTAATTTTGTATGAATATTGTAATTATTTTAGAATGAAATTTGTATTTATAATTTTG
Found at i:32366724 original size:48 final size:48
Alignment explanation
Indices: 32366667--32366783 Score: 225
Period size: 48 Copynumber: 2.4 Consensus size: 48
32366657 TTGGAATAGT
32366667 ATTTTGTATGAATATTGTAATTTTTTGAATGAATATTGTAATATTATA
1 ATTTTGTATGAATATTGTAATTTTTTGAATGAATATTGTAATATTATA
*
32366715 ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATATTATA
1 ATTTTGTATGAATATTGTAATTTTTTGAATGAATATTGTAATATTATA
32366763 ATTTTGTATGAATATTGTAAT
1 ATTTTGTATGAATATTGTAAT
32366784 ATTGTAATTT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (48 bp):
ATTTTGTATGAATATTGTAATTTTTTGAATGAATATTGTAATATTATA
Found at i:32366727 original size:27 final size:27
Alignment explanation
Indices: 32366689--32366809 Score: 175
Period size: 27 Copynumber: 4.7 Consensus size: 27
32366679 TATTGTAATT
*
32366689 TTTTGAATGAATATTGTAATATTATAA
1 TTTTGTATGAATATTGTAATATTATAA
32366716 TTTTGTATGAATATTGT-A-A-T-T--
1 TTTTGTATGAATATTGTAATATTATAA
32366737 TTTTGTATGAATATTGTAATATTATAA
1 TTTTGTATGAATATTGTAATATTATAA
*
32366764 TTTTGTATGAATATTGTAATATTGTAA
1 TTTTGTATGAATATTGTAATATTATAA
32366791 -TTTGTATGAATATTGTAAT
1 TTTTGTATGAATATTGTAAT
32366810 GTCGGGATAT
Statistics
Matches: 86, Mismatches: 2, Indels: 13
0.85 0.02 0.13
Matches are distributed among these distances:
21 17 0.20
22 1 0.01
23 2 0.02
24 2 0.02
25 2 0.02
26 20 0.23
27 42 0.49
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (27 bp):
TTTTGTATGAATATTGTAATATTATAA
Found at i:32367038 original size:16 final size:16
Alignment explanation
Indices: 32366995--32367038 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
32366985 AAAATCAAAT
*
32366995 AAAATTTAATTATATA
1 AAAATTAAATTATATA
* *
32367011 AAAGTTACATTATATA
1 AAAATTAAATTATATA
32367027 AAAATTAAATTA
1 AAAATTAAATTA
32367039 GTTAACAACA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (16 bp):
AAAATTAAATTATATA
Found at i:32367113 original size:38 final size:38
Alignment explanation
Indices: 32367071--32367152 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
32367061 AAAAAGTCAG
32367071 TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTT
*
32367109 TTATAATTAAACTTTTAATAAAATTATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTT
32367147 TTATAA
1 TTATAA
32367153 ACTTTATATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (38 bp):
TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTT
Found at i:32367323 original size:19 final size:19
Alignment explanation
Indices: 32367299--32367433 Score: 118
Period size: 19 Copynumber: 6.8 Consensus size: 19
32367289 ATTATAAAAT
32367299 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
32367318 AATTACAATATTCATACAAAA
1 AATTACAATATTCATAC--AA
32367339 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
*
32367358 AA-TAC--TATTCCAAAACTATA
1 AATTACAATATT-C-ATAC-A-A
*
32367378 AA-TACAAATTTAATT-ATAAAA
1 AATTAC-AA--T-ATTCATACAA
32367399 TAATTACAATATTCATACAA
1 -AATTACAATATTCATACAA
32367419 AATTACAATATTCAT
1 AATTACAATATTCAT
32367434 TGGCGCCTCT
Statistics
Matches: 97, Mismatches: 4, Indels: 30
0.74 0.03 0.23
Matches are distributed among these distances:
16 4 0.04
17 1 0.01
18 6 0.06
19 40 0.41
20 12 0.12
21 20 0.21
22 5 0.05
23 5 0.05
25 1 0.01
26 3 0.03
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (19 bp):
AATTACAATATTCATACAA
Found at i:32367342 original size:21 final size:21
Alignment explanation
Indices: 32367294--32367359 Score: 109
Period size: 21 Copynumber: 3.2 Consensus size: 21
32367284 AATTAATTAT
32367294 AAAATAATTACAATATTCATAC
1 AAAA-AATTACAATATTCATAC
32367316 --AAAATTACAATATTCATAC
1 AAAAAATTACAATATTCATAC
32367335 AAAAAATTACAATATTCATAC
1 AAAAAATTACAATATTCATAC
32367356 AAAA
1 AAAA
32367360 TACTATTCCA
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
19 17 0.40
20 2 0.05
21 23 0.55
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.29
Consensus pattern (21 bp):
AAAAAATTACAATATTCATAC
Found at i:32367506 original size:27 final size:27
Alignment explanation
Indices: 32367429--32367495 Score: 125
Period size: 27 Copynumber: 2.5 Consensus size: 27
32367419 AATTACAATA
32367429 TTCATTGGCGCCTCTCTATGAGGCACC
1 TTCATTGGCGCCTCTCTATGAGGCACC
*
32367456 TTCTTTGGCGCCTCTCTATGAGGCACC
1 TTCATTGGCGCCTCTCTATGAGGCACC
32367483 TTCATTGGCGCCT
1 TTCATTGGCGCCT
32367496 ACCTGATAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.12, C:0.33, G:0.22, T:0.33
Consensus pattern (27 bp):
TTCATTGGCGCCTCTCTATGAGGCACC
Found at i:32370239 original size:16 final size:17
Alignment explanation
Indices: 32370202--32370239 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
32370192 TTTACCTTTT
*
32370202 AACTTAATTAATTGGTA
1 AACTTAATTAATTGGAA
*
32370219 AACTTAATTGA-TGGAA
1 AACTTAATTAATTGGAA
32370235 AACTT
1 AACTT
32370240 TTATCAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (17 bp):
AACTTAATTAATTGGAA
Found at i:32372979 original size:20 final size:20
Alignment explanation
Indices: 32372948--32372990 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
32372938 AAAGAAAAAC
32372948 TTTGTAAAAATGTAAAGATTA
1 TTTGTAAAAATGTAAAG-TTA
*
32372969 TTTGT-AAAATGTCAAGTTA
1 TTTGTAAAAATGTAAAGTTA
32372988 TTT
1 TTT
32372991 ATAGTGTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.29
20 10 0.48
21 5 0.24
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.44
Consensus pattern (20 bp):
TTTGTAAAAATGTAAAGTTA
Found at i:32385724 original size:19 final size:19
Alignment explanation
Indices: 32385697--32385752 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
32385687 ATTCGCATCC
*
32385697 TTCTCTCAATTCTCTCAAA
1 TTCTCTCAACTCTCTCAAA
*
32385716 CTT-TCTCAACTCTCTTAAA
1 -TTCTCTCAACTCTCTCAAA
* *
32385735 TTCTATCAAGTCTCTCAA
1 TTCTCTCAACTCTCTCAA
32385753 CTCTCTCATT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 2 0.07
19 26 0.87
20 2 0.07
ACGTcount: A:0.27, C:0.30, G:0.02, T:0.41
Consensus pattern (19 bp):
TTCTCTCAACTCTCTCAAA
Found at i:32388038 original size:14 final size:14
Alignment explanation
Indices: 32387984--32388040 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
32387974 CTACGGTTAG
*
32387984 GGTTTTGGGTTTT-
1 GGTTTAGGGTTTTA
* *
32387997 GGGTTAGGG-TTAA
1 GGTTTAGGGTTTTA
32388010 GGTTTTAGGGTTTTTA
1 GG-TTTAGGG-TTTTA
32388026 GGTTTAGGGTTTTA
1 GGTTTAGGGTTTTA
32388040 G
1 G
32388041 AGAAAAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
12 2 0.06
13 9 0.26
14 12 0.34
15 7 0.20
16 5 0.14
ACGTcount: A:0.12, C:0.00, G:0.39, T:0.49
Consensus pattern (14 bp):
GGTTTAGGGTTTTA
Found at i:32388548 original size:125 final size:126
Alignment explanation
Indices: 32388214--32388629 Score: 620
Period size: 126 Copynumber: 3.3 Consensus size: 126
32388204 AAATTTTAAG
* * * * *
32388214 GAAAGAAGCTCCGACGTAGATGCACTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGA
1 GAAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGA
* * * *
32388279 CGTTTCTAAGCAAATAGTATCAAAAACGCTTTAAGCAGGATGCATTGTTAGCAAAAGTATT
66 CGTTTCTAAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACT
* * *
32388340 GAAAGAAGCTCCCACATAGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGA
1 GAAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGA
32388405 CGTTTCTAAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACT
66 CGTTTCTAAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACT
** *
32388466 GAAA-TCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGTTCCTGAAAAAATAATTTCGAGTAGA
1 GAAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGA
* * *
32388530 CGTTTCTGATCAAATAGTGTC-AAAACACTTTAAGCAGGATGCTTTGTCAGCAAAAGTACT
66 CGTTTCTAAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACT
* * * *
32388590 AAAAGAAGCTCCCACGTGGACACCCTTTTGCTATAGTAGC
1 GAAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGC
32388630 ACATGTTTGG
Statistics
Matches: 263, Mismatches: 26, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
124 41 0.16
125 102 0.39
126 120 0.46
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (126 bp):
GAAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGA
CGTTTCTAAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACT
Found at i:32392011 original size:21 final size:21
Alignment explanation
Indices: 32391987--32392027 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32391977 CAGCTTTCGG
* * *
32391987 CAGGGGTTGTGGTTGCTCCGA
1 CAGGGATTCTGGTTCCTCCGA
32392008 CAGGGATTCTGGTTCCTCCG
1 CAGGGATTCTGGTTCCTCCG
32392028 GTAGCGGATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.24, G:0.37, T:0.29
Consensus pattern (21 bp):
CAGGGATTCTGGTTCCTCCGA
Found at i:32392310 original size:18 final size:18
Alignment explanation
Indices: 32392284--32392326 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
32392274 GACTGGAAAA
* * *
32392284 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
32392302 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
32392320 AGGATAC
1 AGGATAC
32392327 GCACTTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:32394108 original size:12 final size:12
Alignment explanation
Indices: 32394087--32394117 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
32394077 AATTTTTACG
32394087 ATTT-AAAAAAA
1 ATTTAAAAAAAA
32394098 ATTTAAAAAAAA
1 ATTTAAAAAAAA
32394110 ATTTAAAA
1 ATTTAAAA
32394118 CTTTTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
ATTTAAAAAAAA
Found at i:32394172 original size:11 final size:11
Alignment explanation
Indices: 32394158--32394203 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
32394148 TTTTTTAAAT
32394158 AGGAATTTGAG
1 AGGAATTTGAG
32394169 AGGAATTTGAG
1 AGGAATTTGAG
32394180 A-GAATATT-AG
1 AGGAAT-TTGAG
*
32394190 AGAGAAATTGAG
1 AG-GAATTTGAG
32394202 AG
1 AG
32394204 AAAGGATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
10 7 0.23
11 16 0.53
12 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.33, T:0.24
Consensus pattern (11 bp):
AGGAATTTGAG
Found at i:32394202 original size:10 final size:10
Alignment explanation
Indices: 32394164--32394206 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
32394154 AAATAGGAAT
*
32394164 TTGAGAGGAAT
1 TTGAGA-GAAA
32394175 TTGAGAGAATA
1 TTGAGAGAA-A
32394186 TTAGAGAGAAA
1 TT-GAGAGAAA
32394197 TTGAGAGAAA
1 TTGAGAGAAA
32394207 GGATTTAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 11 0.38
11 11 0.38
12 7 0.24
ACGTcount: A:0.47, C:0.00, G:0.30, T:0.23
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:32408103 original size:125 final size:126
Alignment explanation
Indices: 32407785--32408156 Score: 340
Period size: 125 Copynumber: 3.0 Consensus size: 126
32407775 TTGTTTTTCG
* * * * * * * *
32407785 TTGCACTT-TCAATGTATACTAATGATGATTCCTTTCTGTTTTTACGCAATGTGTTACATGT-CG
1 TTGCACTTAT-AATGTATACTAATGATGATTCCTTACAGTTCTTACACAATTTGTTGCATATATG
* * * * ** * * * * *
32407848 -TTATTCATTTCCATATCTCGATTTTAATGTTGACATGTTCTTCATTGCATTAGAATAGTGG
65 ATTATTCGTTTACATATCTTGAGTTTAATGCCGATACGTTCTTCATTGCATTAGCATAGCGA
* * * * * * *
32407909 TTGCACTTTTGATGTATACTAGTGATGATTCTTTCCGGTTCTTACACAATTTGTTGCATATATGG
1 TTGCACTTATAATGTATACTAATGATGATTCCTTACAGTTCTTACACAATTTGTTGCATATATGA
** *
32407974 TTATTCGTTTGTATATCTTGAGTTTAATGCCGATACGTTCTTCATTGCATTATCATAGCGA
66 TTATTCGTTTACATATCTTGAGTTTAATGCCGATACGTTCTTCATTGCATTAGCATAGCGA
* * * *
32408035 TTGCAC-TATAATGTATACTAATGATGATTCCTTATAGTTCTTACTCAATTT-TCTGCATATGTT
1 TTGCACTTATAATGTATACTAATGATGATTCCTTACAGTTCTTACACAATTTGT-TGCATATATG
* ** * * *
32408098 ATTATTTGTTTACATATCTTGAGTTTAATGTTGATATGTTCTTCAATGCACTAGCATAG
65 ATTATTCGTTTACATATCTTGAGTTTAATGCCGATACGTTCTTCATTGCATTAGCATAG
32408157 GATAGCAGCG
Statistics
Matches: 200, Mismatches: 44, Indels: 7
0.80 0.18 0.03
Matches are distributed among these distances:
124 50 0.25
125 96 0.48
126 54 0.27
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.45
Consensus pattern (126 bp):
TTGCACTTATAATGTATACTAATGATGATTCCTTACAGTTCTTACACAATTTGTTGCATATATGA
TTATTCGTTTACATATCTTGAGTTTAATGCCGATACGTTCTTCATTGCATTAGCATAGCGA
Found at i:32411152 original size:14 final size:14
Alignment explanation
Indices: 32411135--32411162 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32411125 ACAAACAAAT
32411135 AAATAAATCAATAA
1 AAATAAATCAATAA
32411149 AAATAAATCAATAA
1 AAATAAATCAATAA
32411163 CATGCAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAAATCAATAA
Found at i:32411152 original size:18 final size:16
Alignment explanation
Indices: 32411114--32411156 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
32411104 AATGGCATAG
*
32411114 AAATAATATAAACAAAC
1 AAATAA-ATAAACAAAA
32411131 AAATAAATAAATCAATAA
1 AAATAAATAAA-CAA-AA
32411149 AAATAAAT
1 AAATAAAT
32411157 CAATAACATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 5 0.22
17 9 0.39
18 9 0.39
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (16 bp):
AAATAAATAAACAAAA
Found at i:32412121 original size:19 final size:19
Alignment explanation
Indices: 32412097--32412149 Score: 70
Period size: 21 Copynumber: 2.7 Consensus size: 19
32412087 CATATCTTCT
32412097 AAGATTGCATATCAAATCC
1 AAGATTGCATATCAAATCC
* *
32412116 AAGATTGCACATATCATATCT
1 AAGATTG--CATATCAAATCC
32412137 AAGATTGCATATC
1 AAGATTGCATATC
32412150 CTCAATAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 13 0.43
21 17 0.57
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (19 bp):
AAGATTGCATATCAAATCC
Found at i:32412558 original size:44 final size:44
Alignment explanation
Indices: 32412484--32412690 Score: 129
Period size: 44 Copynumber: 4.7 Consensus size: 44
32412474 AAAATACACC
** **
32412484 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGAA
*
32412528 ATCTTCAATCTATTCCACTGTTGCCCAGGGA-AGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTGTTGCCCAGGGAGA-TAAG-A-T-CTGAA
* * ** * * **
32412572 -GCTTCAATGTACTCCACTGTAACCACAGGGACG-TAAAATCCGCC
1 ATCTTCAATCTACTCCACTGTTGCC-CAGGGA-GATAAGATCTGAA
* * ** ** *
32412616 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCTGAA
1 ATCTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGAA
*
32412660 ATCTTCAATCTATTCCACTGTTGCCCAGGGA
1 ATCTTCAATCTACTCCACTGTTGCCCAGGGA
32412691 AGTAGAATTA
Statistics
Matches: 117, Mismatches: 34, Indels: 24
0.67 0.19 0.14
Matches are distributed among these distances:
42 2 0.02
43 24 0.21
44 71 0.61
45 17 0.15
46 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTGTTGCCCAGGGAGATAAGATCTGAA
Found at i:32412618 original size:132 final size:132
Alignment explanation
Indices: 32412378--32413030 Score: 1013
Period size: 132 Copynumber: 4.9 Consensus size: 132
32412368 CTGCAACTGC
* * * ** * * *
32412378 AGGGAGATAAGA-CTTACAATCTTCAACCTATTCCATTACTGACCAGGG-AGATAGGATTATTGG
1 AGGGAGATAAGATCTGA-AATCTTCAATCTATTCCACTGTTGCCCAGGGAAG-TAGAATTACTGG
* * * *
32412441 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATACACCATCTTCAATCTACTCCACTACT
64 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACT
32412506 GCTT
129 GCTT
32412510 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCT
*
32412575 TCAATGTACTCCACTGTAACCACAGGGACGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
66 TCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
32412640 TT
131 TT
*
32412642 AGGGAGATAAGACCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCT
* * * * *
32412707 TCAGTGTATTTCACTATAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGC
66 TCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
32412772 TT
131 TT
* * * * *
32412774 AGGGAGATAATATCTGAAATCTTCAATCTATTCCACTGTTGTCAATGGAAGTAGAATTACTAGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCT
*
32412839 TCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
66 TCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
32412904 TT
131 TT
*
32412906 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCT
** *
32412971 TCAATGTACTCCACTGTAACCACAATGAGGTAAAATCCGCCATCTTCGATCTGCTTCACT
66 TCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACT
32413031 GTCAATGCAG
Statistics
Matches: 481, Mismatches: 38, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
132 476 0.99
133 5 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (132 bp):
AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCT
TCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
TT
Found at i:32413061 original size:45 final size:45
Alignment explanation
Indices: 32412998--32413149 Score: 107
Period size: 45 Copynumber: 3.4 Consensus size: 45
32412988 AACCACAATG
* * *
32412998 AGGTAAAATCCGCCATCTTCGATCTGCTTCACTGTCAATGCAGGA
1 AGGTAAGATCTGCTATCTTCGATCTGCTTCACTGTCAATGCAGGA
** * * * *
32413043 AGGTAAGATCTGCTATCTTTAACCTGCTCCACT-ACAA-CCGAGGA
1 AGGTAAGATCTGCTATCTTCGATCTGCTTCACTGTCAATGC-AGGA
* * * * * * *
32413087 AGGCAAGGCTTTG-T-T-TTTGATCTGTTTCGCTGTCGATGCAGGA
1 AGGTAA-GATCTGCTATCTTCGATCTGCTTCACTGTCAATGCAGGA
32413130 AGGTAAGATCTGCTATCTTC
1 AGGTAAGATCTGCTATCTTC
32413150 ACTGATCTGT
Statistics
Matches: 76, Mismatches: 24, Indels: 14
0.67 0.21 0.12
Matches are distributed among these distances:
42 15 0.20
43 14 0.18
44 15 0.20
45 32 0.42
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.30
Consensus pattern (45 bp):
AGGTAAGATCTGCTATCTTCGATCTGCTTCACTGTCAATGCAGGA
Found at i:32419285 original size:12 final size:13
Alignment explanation
Indices: 32419257--32419300 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
32419247 ATAAAGAAAA
*
32419257 ATATAAAAAATAT
1 ATATTAAAAATAT
*
32419270 ATATATTAAAATAT
1 ATAT-TAAAAATAT
*
32419284 ATGTTAAAAATAT
1 ATATTAAAAATAT
32419297 ATAT
1 ATAT
32419301 GTATTTGAGC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (13 bp):
ATATTAAAAATAT
Found at i:32419301 original size:15 final size:15
Alignment explanation
Indices: 32419262--32419302 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 15
32419252 GAAAAATATA
*
32419262 AAAAATATATATATT
1 AAAAATATATATGTT
32419277 --AAA-ATATATGTT
1 AAAAATATATATGTT
32419289 AAAAATATATATGT
1 AAAAATATATATGT
32419303 ATTTGAGCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
12 8 0.36
13 3 0.14
14 3 0.14
15 8 0.36
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (15 bp):
AAAAATATATATGTT
Found at i:32419965 original size:19 final size:19
Alignment explanation
Indices: 32419938--32420033 Score: 129
Period size: 21 Copynumber: 4.8 Consensus size: 19
32419928 AATCATATCT
*
32419938 TCTAAGATTGCATATCAAA
1 TCTAAGATTGCATATCATA
*
32419957 TCCAAGATTGCACATATCATA
1 TCTAAGATTG--CATATCATA
32419978 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
32419997 TCTAATATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
32420018 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
32420034 CTCAACAATT
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
19 33 0.49
21 35 0.51
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:32419986 original size:40 final size:40
Alignment explanation
Indices: 32419931--32420033 Score: 156
Period size: 40 Copynumber: 2.6 Consensus size: 40
32419921 ATTACAAAAT
32419931 CATATC-T-TCTAAGATTGCATATCAAATCCAAGATTGCA
1 CATATCATATCTAAGATTGCATATCAAATCCAAGATTGCA
* * *
32419969 CATATCATATCTAAGATTGCATATCATATCTAATATTGCA
1 CATATCATATCTAAGATTGCATATCAAATCCAAGATTGCA
*
32420009 TATATCATATCTAAGATTGCATATC
1 CATATCATATCTAAGATTGCATATC
32420034 CTCAACAATT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 6 0.10
39 1 0.02
40 52 0.88
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (40 bp):
CATATCATATCTAAGATTGCATATCAAATCCAAGATTGCA
Found at i:32420030 original size:21 final size:20
Alignment explanation
Indices: 32419915--32420033 Score: 127
Period size: 21 Copynumber: 5.8 Consensus size: 20
32419905 AAATTAAATC
* *
32419915 TCTAAGATTACAAAATCATA
1 TCTAAGATTGCAATATCATA
*
32419935 TCTTCTAAGATTGC-ATATCAAA
1 ---TCTAAGATTGCAATATCATA
*
32419957 TCCAAGATTGCACATATCATA
1 TCTAAGATTGCA-ATATCATA
32419978 TCTAAGATTGC-ATATCATA
1 TCTAAGATTGCAATATCATA
*
32419997 TCTAATATTGCATATATCATA
1 TCTAAGATTGCA-ATATCATA
32420018 TCTAAGATTGC-ATATC
1 TCTAAGATTGCAATATC
32420034 CTCAACAATT
Statistics
Matches: 84, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
19 33 0.39
21 35 0.42
22 6 0.07
23 10 0.12
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:32421889 original size:14 final size:15
Alignment explanation
Indices: 32421867--32421943 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
32421857 CAATCAAACA
32421867 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
32421881 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
32421896 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
32421916 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
32421930 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
32421944 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:32421908 original size:20 final size:20
Alignment explanation
Indices: 32421883--32421922 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32421873 AATATTTTCC
*
32421883 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
32421903 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
32421923 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:32421928 original size:34 final size:35
Alignment explanation
Indices: 32421871--32421937 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
32421861 CAAACACCAG
*
32421871 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
32421906 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
32421938 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:32424754 original size:31 final size:31
Alignment explanation
Indices: 32424719--32424779 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
32424709 ATTAAATTTT
32424719 AATAAAAT-TATTATTAAAT-ATAATTTAATAA
1 AATAAAATATATT-TT-AATCATAATTTAATAA
* *
32424750 AATAATATATATTTTAATCATATTTTAATA
1 AATAAAATATATTTTAATCATAATTTAATA
32424780 TATTTATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
30 3 0.12
31 19 0.73
32 4 0.15
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (31 bp):
AATAAAATATATTTTAATCATAATTTAATAA
Found at i:32424912 original size:6 final size:6
Alignment explanation
Indices: 32424901--32424946 Score: 92
Period size: 6 Copynumber: 7.7 Consensus size: 6
32424891 TTTTCTTCTC
32424901 CCTCTA CCTCTA CCTCTA CCTCTA CCTCTA CCTCTA CCTCTA CCTC
1 CCTCTA CCTCTA CCTCTA CCTCTA CCTCTA CCTCTA CCTCTA CCTC
32424947 ACGAGTCCCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33
Consensus pattern (6 bp):
CCTCTA
Found at i:32427335 original size:45 final size:45
Alignment explanation
Indices: 32427271--32427360 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
32427261 GATGAAAAAA
32427271 ATATAAAATATACATAAAATCAACACTAACACTAACAACATGTTT
1 ATATAAAATATACATAAAATCAACACTAACACTAACAACATGTTT
32427316 ATATAAAATATACATAAAATCAACACTAACACTAACAACATGTTT
1 ATATAAAATATACATAAAATCAACACTAACACTAACAACATGTTT
32427361 GGTTGAGGGG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.53, C:0.18, G:0.02, T:0.27
Consensus pattern (45 bp):
ATATAAAATATACATAAAATCAACACTAACACTAACAACATGTTT
Found at i:32428406 original size:21 final size:22
Alignment explanation
Indices: 32428382--32428433 Score: 72
Period size: 20 Copynumber: 2.4 Consensus size: 22
32428372 TTTAAAATAC
32428382 TTTAAAAATATTTTTTT-TATT
1 TTTAAAAATATTTTTTTGTATT
*
32428403 TTT-AAAATATTTTTTTGTGTT
1 TTTAAAAATATTTTTTTGTATT
32428424 TATTAAAAAT
1 T-TTAAAAAT
32428434 CGGGCCGGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 13 0.48
21 7 0.26
22 2 0.07
23 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (22 bp):
TTTAAAAATATTTTTTTGTATT
Found at i:32430274 original size:17 final size:17
Alignment explanation
Indices: 32430249--32430282 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32430239 CATTCTGACC
*
32430249 TTATCTCACAAAATTTA
1 TTATATCACAAAATTTA
*
32430266 TTATATCACATAATTTA
1 TTATATCACAAAATTTA
32430283 CAATTTCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (17 bp):
TTATATCACAAAATTTA
Found at i:32432579 original size:26 final size:26
Alignment explanation
Indices: 32432527--32432577 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
32432517 AGAAAATTTT
*
32432527 TAAATATATATTTTTTATAATTAAAA
1 TAAATATATATTATTTATAATTAAAA
* *
32432553 TAAAT-TATATTATTTCTTATTAAAA
1 TAAATATATATTATTTATAATTAAAA
32432578 ATTTAGTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (26 bp):
TAAATATATATTATTTATAATTAAAA
Found at i:32443997 original size:30 final size:31
Alignment explanation
Indices: 32443953--32444015 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
32443943 TTTATTATGT
32443953 CAATATCTCGATACCCATATCTTTGACTTTC
1 CAATATCTCGATACCCATATCTTTGACTTTC
* *
32443984 CAATAT-TTGATACCCATATCTTTGATTTTC
1 CAATATCTCGATACCCATATCTTTGACTTTC
32444014 CA
1 CA
32444016 TAAATATGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.27, C:0.25, G:0.06, T:0.41
Consensus pattern (31 bp):
CAATATCTCGATACCCATATCTTTGACTTTC
Found at i:32444007 original size:15 final size:15
Alignment explanation
Indices: 32443962--32444009 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
32443952 TCAATATCTC
32443962 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
32443977 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
32443992 GATACCCATATCTTT
1 GATACCCATATCTTT
32444007 GAT
1 GAT
32444010 TTTCCATAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:32460962 original size:45 final size:46
Alignment explanation
Indices: 32460895--32461018 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
32460885 CATATGACCT
*
32460895 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
32460938 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
32460984 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
32461019 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:32461001 original size:46 final size:45
Alignment explanation
Indices: 32460895--32461129 Score: 207
Period size: 37 Copynumber: 5.8 Consensus size: 45
32460885 CATATGACCT
*
32460895 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
32460938 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
32460984 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
32461021 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
32461058 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
32461095 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
32461130 CACTTATCAC
Statistics
Matches: 177, Mismatches: 7, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
37 101 0.57
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.05
44 6 0.03
45 21 0.12
46 34 0.19
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:32461022 original size:37 final size:37
Alignment explanation
Indices: 32460980--32461156 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
32460970 AGCTGAAGCT
* **
32460980 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
32461017 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
32461054 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
32461091 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
32461128 GCCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
32461157 AGTACTCAAA
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:32468175 original size:45 final size:46
Alignment explanation
Indices: 32468108--32468231 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
32468098 CATATGACCT
*
32468108 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
32468151 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
32468197 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
32468232 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:32468214 original size:46 final size:45
Alignment explanation
Indices: 32468108--32468342 Score: 198
Period size: 37 Copynumber: 5.8 Consensus size: 45
32468098 CATATGACCT
*
32468108 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
32468151 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
32468197 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
* *
32468234 CTTATCACTTTGTCTCTTAATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
32468271 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
32468308 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
32468343 CACTTATCAC
Statistics
Matches: 175, Mismatches: 9, Indels: 18
0.87 0.04 0.09
Matches are distributed among these distances:
37 99 0.57
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.05
44 6 0.03
45 21 0.12
46 34 0.19
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:32468235 original size:37 final size:37
Alignment explanation
Indices: 32468193--32468369 Score: 291
Period size: 37 Copynumber: 4.8 Consensus size: 37
32468183 AGCTGAAGCT
* **
32468193 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* * *
32468230 GCCACTTATCACTTTGTCTCTTAATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
32468267 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
32468304 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
32468341 GCCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
32468370 AGTACTCAAA
Statistics
Matches: 132, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 132 1.00
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:32471439 original size:132 final size:132
Alignment explanation
Indices: 32471202--32471881 Score: 1234
Period size: 132 Copynumber: 5.2 Consensus size: 132
32471192 TACAGTGGGA
*
32471202 TAGATTGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCC
1 TAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCC
*
32471267 TATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCAA
66 TATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
32471332 AG
131 AG
*
32471334 TAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGACCC
1 TAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCC
32471399 TATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
66 TATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
32471464 AG
131 AG
32471466 TAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCC
1 TAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCC
32471531 TATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
66 TATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
32471596 AG
131 AG
32471598 TAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCC
1 TAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCC
*
32471663 TATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
66 TATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
32471728 AG
131 AG
* * * *
32471730 TAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAAATCGAAGGTAGCAGATCC
1 TAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCC
* * * * *
32471795 TATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGGTGGTGA
66 TATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
32471860 AG
131 AG
*
32471862 TAGATCGAAGAAAGCCGATC
1 TAGATCGAAGAAAGCAGATC
32471882 GACGATGGCA
Statistics
Matches: 532, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 532 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (132 bp):
TAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCC
TATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
AG
Found at i:32477029 original size:8 final size:8
Alignment explanation
Indices: 32477016--32477196 Score: 89
Period size: 8 Copynumber: 23.1 Consensus size: 8
32477006 TAAAATGTAA
32477016 AATAATAT
1 AATAATAT
32477024 AATAATAT
1 AATAATAT
*
32477032 AAAAATAT
1 AATAATAT
32477040 -ATAA-AT
1 AATAATAT
* *
32477046 ATTATGTGAT
1 AATA-AT-AT
32477056 AA-AA-AT
1 AATAATAT
32477062 -ATAATAT
1 AATAATAT
32477069 AATAA-AT
1 AATAATAT
*
32477076 AATAA-GT
1 AATAATAT
*
32477083 AATGATAT
1 AATAATAT
* *
32477091 -ATATTAA
1 AATAATAT
32477098 AAT-ATAT
1 AATAATAT
*
32477105 ATTAATAT
1 AATAATAT
* *
32477113 GATAATAG
1 AATAATAT
*
32477121 AAAAATAT
1 AATAATAT
32477129 GAAGTAATAT
1 -AA-TAATAT
32477139 AAT-ATAAT
1 AATAAT-AT
32477147 AA-AATAT
1 AATAATAT
32477154 AAGTAA-AT
1 AA-TAATAT
32477162 AATAATAT
1 AATAATAT
*
32477170 AAAATATAT
1 AATA-ATAT
*
32477179 AATACATAA
1 AATA-ATAT
32477188 AATAATAT
1 AATAATAT
32477196 A
1 A
32477197 TATATACAAT
Statistics
Matches: 128, Mismatches: 27, Indels: 36
0.67 0.14 0.19
Matches are distributed among these distances:
5 1 0.01
6 6 0.05
7 36 0.28
8 56 0.44
9 21 0.16
10 8 0.06
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.34
Consensus pattern (8 bp):
AATAATAT
Found at i:32477046 original size:50 final size:49
Alignment explanation
Indices: 32476964--32477079 Score: 114
Period size: 50 Copynumber: 2.3 Consensus size: 49
32476954 ATATACATGA
* * *
32476964 AAAAT-ATATAATAGATAATAATAATATGAAATAATATAT-TG-TTAAAATGT
1 AAAATAATATAATA-AT-ATAAAAATATGAAAT-AT-TATGTGATAAAAATAT
*
32477014 AAAATAATATAATAATATAAAAATATATAAATATTATGTGATAAAAATAT
1 AAAATAATATAATAATATAAAAATAT-GAAATATTATGTGATAAAAATAT
*
32477064 AATATAATA-AATAATA
1 AAAATAATATAATAATA
32477080 AGTAATGATA
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
48 3 0.05
49 20 0.35
50 26 0.46
51 8 0.14
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.34
Consensus pattern (49 bp):
AAAATAATATAATAATATAAAAATATGAAATATTATGTGATAAAAATAT
Found at i:32477143 original size:5 final size:5
Alignment explanation
Indices: 32477133--32477202 Score: 54
Period size: 5 Copynumber: 13.4 Consensus size: 5
32477123 AAATATGAAG
* *
32477133 TAATA TAATA TAATA AAATA TAAGTA -AATAA TAATA TAAAA T-ATA TAATACA
1 TAATA TAATA TAATA TAATA TAA-TA TAAT-A TAATA TAATA TAATA TAAT--A
*
32477185 TAAAA TAATA TATATA TA
1 TAATA TAATA TA-ATA TA
32477203 CAATTTAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
4 4 0.08
5 34 0.65
6 10 0.19
7 4 0.08
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (5 bp):
TAATA
Found at i:32477187 original size:21 final size:21
Alignment explanation
Indices: 32477144--32477204 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
32477134 AATATAATAT
32477144 AATAAAATATAAGTAAATA-ATAA
1 AATAAAATAT-A-T-AATACATAA
*
32477167 TATAAAATATATAATACATAA
1 AATAAAATATATAATACATAA
*
32477188 AATAATATATAT-ATACA
1 AATAAAATATATAATACA
32477205 ATTTAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 9 0.26
21 15 0.44
22 1 0.03
23 9 0.26
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (21 bp):
AATAAAATATATAATACATAA
Found at i:32477191 original size:23 final size:26
Alignment explanation
Indices: 32477058--32477180 Score: 93
Period size: 25 Copynumber: 4.9 Consensus size: 26
32477048 TATGTGATAA
32477058 AAAT-ATAATATAAT-AAATAATAAGT
1 AAATAATAATATAATAAAAT-ATAAGT
* * *
32477083 -AATGAT-ATATATTAAAATATATATT
1 AAATAATAATATAATAAAATATA-AGT
* *
32477108 AATATGATAATA-GA-AAAATATGAAGT
1 AA-ATAATAATATAATAAAATAT-AAGT
32477134 -AAT-ATAATATAATAAAATATAAGT
1 AAATAATAATATAATAAAATATAAGT
*
32477158 AAATAATAATATAA-AATATATAA
1 AAATAATAATATAATAAAATATAA
32477181 TACATAAAAT
Statistics
Matches: 80, Mismatches: 7, Indels: 22
0.73 0.06 0.20
Matches are distributed among these distances:
23 6 0.08
24 19 0.24
25 27 0.34
26 19 0.24
27 6 0.08
28 3 0.04
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (26 bp):
AAATAATAATATAATAAAATATAAGT
Found at i:32477225 original size:27 final size:26
Alignment explanation
Indices: 32477187--32477245 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
32477177 ATAATACATA
* *
32477187 AAATAATATATATATACAATTTAAAAT
1 AAATAATATATAAATA-AATTTAAAAG
*
32477214 AAATAAGT-TATAAATAATTTTAAAAG
1 AAATAA-TATATAAATAAATTTAAAAG
32477240 AAATAA
1 AAATAA
32477246 AGGGACTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 14 0.50
27 13 0.46
28 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (26 bp):
AAATAATATATAAATAAATTTAAAAG
Found at i:32482847 original size:12 final size:12
Alignment explanation
Indices: 32482818--32482852 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
32482808 GAATTAGTCC
*
32482818 TATTATTATTAT
1 TATTACTATTAT
32482830 TATTACTATTAT
1 TATTACTATTAT
32482842 TATTACCTATT
1 TATTA-CTATT
32482853 TATTTATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 16 0.76
13 5 0.24
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTACTATTAT
Found at i:32494240 original size:1 final size:1
Alignment explanation
Indices: 32494234--32494266 Score: 57
Period size: 1 Copynumber: 33.0 Consensus size: 1
32494224 TTTGCTTCCT
*
32494234 AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
32494267 CTTTGGAGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.97, C:0.03, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:32495646 original size:44 final size:44
Alignment explanation
Indices: 32495592--32496019 Score: 218
Period size: 44 Copynumber: 9.8 Consensus size: 44
32495582 AGAATTTCAG
* *
32495592 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAACTGGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAACTGGTA
* * * *
32495636 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGG--
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAA-C-TGGTA
* * * * * * *
32495680 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCACCAGG--
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAACTGGTA
* * ** * *
32495722 -TCTTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAAT-TTCAA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-ACTGGT--A
* * *
32495767 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAACTGGTA
* * ** **
32495811 ATCCTATCTCTCTGAGATTACAGTGGAGTGGATTAGAATAAAGG--
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAA-ACTGGTA
* * * * * * *
32495855 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCACCAGG--
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAACTGGTA
* * * ** * *
32495897 -TCCTATTTCCCTGAGATTACAGTGGAACAGACCGAAGAAT-TTCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-ACTGGT-A
* * *
32495941 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAACTGGTA
* * *
32495986 ATCCTATCTCCCTGAGATTATAGTGGAGCGGATT
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT
32496020 AAAATAAAGG
Statistics
Matches: 287, Mismatches: 75, Indels: 44
0.71 0.18 0.11
Matches are distributed among these distances:
41 53 0.18
42 8 0.03
43 5 0.02
44 148 0.52
45 7 0.02
46 66 0.23
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAACTGGTA
Found at i:32495870 original size:175 final size:175
Alignment explanation
Indices: 32495579--32496064 Score: 846
Period size: 175 Copynumber: 2.8 Consensus size: 175
32495569 CGAAGTAGAT
* * *
32495579 CGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAACTGGTAATCCTATC
1 CGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATC
**
32495644 TCCCTGAGATTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
66 TCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
*
32495709 AGATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGAC
131 AGATCGCACCAGGTCCTATTTCCCTGAGATTACAGTGGAACAGAC
*
32495754 CGAAGAATTTCAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATC
1 CGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATC
* * *
32495819 TCTCTGAGATTACAGTGGAGTGGATTAGAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
66 TCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
32495884 AGATCGCACCAGGTCCTATTTCCCTGAGATTACAGTGGAACAGAC
131 AGATCGCACCAGGTCCTATTTCCCTGAGATTACAGTGGAACAGAC
32495929 CGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATC
1 CGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATC
* * * *
32495994 TCCCTGAGATTATAGTGGAGCGGATTAAAATAAAGGATATTATTTCTCTGAGGTTACAGTAGAGT
66 TCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
32496059 AGATCG
131 AGATCG
32496065 TTTCAGATCT
Statistics
Matches: 293, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
175 293 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (175 bp):
CGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATC
TCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
AGATCGCACCAGGTCCTATTTCCCTGAGATTACAGTGGAACAGAC
Found at i:32497612 original size:3 final size:3
Alignment explanation
Indices: 32497606--32497641 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
32497596 ATTATTGAAT
**
32497606 TTA TTA TTA TTA TTA TTA TTA ACA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32497642 CATTTTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:32504313 original size:30 final size:30
Alignment explanation
Indices: 32504267--32504360 Score: 152
Period size: 30 Copynumber: 3.1 Consensus size: 30
32504257 TTTTATTATG
*
32504267 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
*
32504298 CCAATATTTGATACCCATATATTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
32504328 CCAATATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
32504358 CCA
1 CCA
32504361 TAAATATGGA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 52 0.88
31 7 0.12
ACGTcount: A:0.28, C:0.24, G:0.06, T:0.41
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:32504319 original size:15 final size:15
Alignment explanation
Indices: 32504277--32504354 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
32504267 CCAATATCTC
*
32504277 GATACCCATATCTTT
1 GATACCCATATATTT
**
32504292 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
32504307 GATACCCATATATTT
1 GATACCCATATATTT
**
32504322 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
*
32504337 GATACCCATATCTTT
1 GATACCCATATATTT
32504352 GAT
1 GAT
32504355 TTTCCATAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
14 8 0.16
15 33 0.67
16 8 0.16
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:32505757 original size:29 final size:30
Alignment explanation
Indices: 32505697--32505763 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
32505687 ATTAATTTTT
*
32505697 AAATT-TTTTTAAAATTCAAAATATTATAA
1 AAATTATTTTTAAAATTCAAAATATCATAA
*
32505726 AAATTATTTTTAAAAATT-AAAA-ATCATTA
1 AAATTATTTTT-AAAATTCAAAATATCATAA
32505755 AAATTATTT
1 AAATTATTT
32505764 AAAAATATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 19 0.56
30 9 0.26
31 6 0.18
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (30 bp):
AAATTATTTTTAAAATTCAAAATATCATAA
Found at i:32505765 original size:20 final size:20
Alignment explanation
Indices: 32505742--32505783 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
32505732 TTTTTAAAAA
*
32505742 TTAAAAATCAT-TAAAATTAT
1 TTAAAAAT-ATATAAAAATAT
32505762 TTAAAAATATATAAAAATAT
1 TTAAAAATATATAAAAATAT
32505782 TT
1 TT
32505784 TTTAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
TTAAAAATATATAAAAATAT
Found at i:32510471 original size:27 final size:27
Alignment explanation
Indices: 32510435--32510529 Score: 77
Period size: 27 Copynumber: 3.4 Consensus size: 27
32510425 AGAAATACAA
*
32510435 ATATAAAAATCGTAAAAATTATAAAAT
1 ATATAGAAATCGTAAAAATTATAAAAT
*
32510462 ATATAGAAAT-ATAAAAAATTATAAAATT
1 ATATAGAAATCGT-AAAAATTATAAAA-T
* *
32510490 TTATA-AAGTCGTAAGAAGATTATACAAAAT
1 ATATAGAAATCGTAA-AA-ATTAT--AAAAT
*
32510520 ATAAAGAAAT
1 ATATAGAAAT
32510530 ATAAATTTCG
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
26 1 0.02
27 27 0.52
28 8 0.15
29 5 0.10
30 4 0.08
31 7 0.13
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.29
Consensus pattern (27 bp):
ATATAGAAATCGTAAAAATTATAAAAT
Found at i:32510906 original size:86 final size:88
Alignment explanation
Indices: 32510816--32511085 Score: 280
Period size: 86 Copynumber: 3.1 Consensus size: 88
32510806 TCTAATTTTT
* *
32510816 AAAAATAGCAGGGGCTTAATT-TTTTTTTTGAAAAATTTTGAGGGTCTTTTTTATGCATTTTGAA
1 AAAAAAAGCAGGGGCTTAATTGTTTTTTTTGAAAAAGTTTGAGGGTCTTTTTTATGCATTTTGAA
*
32510880 AGTTTAAGTACTCAATTAAGTG-
66 AGTTTAAATACTCAATTAAGTGA
* * * * *
32510902 AAAAAAAGCAGGGGCTTAATTGCTTTTTTTT--TAAAGCTTGAGAGCCTTTTTGATGCATTTTGA
1 AAAAAAAGCAGGGGCTTAATTG-TTTTTTTTGAAAAAGTTTGAGGGTCTTTTTTATGCATTTTGA
* * *
32510965 ATGTTTAAATACCCAATTAAATGAA
65 AAGTTTAAATACTCAATTAAGTG-A
* * * * * *
32510990 AAAAAAAGTAGGGGCTTAATTGCTTTTCTTGAAAAAGTTTGAGGAT-TTTTTTGATGTATTTTAA
1 AAAAAAAGCAGGGGCTTAATTGTTTTTTTTGAAAAAGTTTGAGGGTCTTTTTT-ATGCATTTTGA
* * * *
32511054 AAGTTCAATTGCTCAATTATGTGCA
65 AAGTTTAAATACTCAATTAAGTG-A
32511079 AAAAAAA
1 AAAAAAA
32511086 AATTTGAGGA
Statistics
Matches: 147, Mismatches: 30, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
86 65 0.44
87 6 0.04
88 34 0.23
89 42 0.29
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (88 bp):
AAAAAAAGCAGGGGCTTAATTGTTTTTTTTGAAAAAGTTTGAGGGTCTTTTTTATGCATTTTGAA
AGTTTAAATACTCAATTAAGTGA
Found at i:32512947 original size:31 final size:31
Alignment explanation
Indices: 32512901--32512974 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
32512891 TTTAACGATA
* * **
32512901 GAGTGGCT-AAATTGACAACTTATCTTATGC
1 GAGTGACTAAAATTGACAACTTATCTAACAC
*
32512931 GAGTGACTAAAATTGACAACTTATCTAACAT
1 GAGTGACTAAAATTGACAACTTATCTAACAC
32512962 GAGTGACTAAAAT
1 GAGTGACTAAAAT
32512975 AACAATTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
30 7 0.18
31 31 0.82
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (31 bp):
GAGTGACTAAAATTGACAACTTATCTAACAC
Found at i:32515088 original size:22 final size:23
Alignment explanation
Indices: 32515039--32515090 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
32515029 ATAAATTTAA
32515039 AAATTTTGCCAAAACTATTTTTT
1 AAATTTTGCCAAAACTATTTTTT
32515062 AAATTTTGCCAAAACTATTTTTT
1 AAATTTTGCCAAAACTATTTTTT
32515085 -AATTTT
1 AAATTTT
32515091 AATTGAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 6 0.21
23 23 0.79
ACGTcount: A:0.35, C:0.12, G:0.04, T:0.50
Consensus pattern (23 bp):
AAATTTTGCCAAAACTATTTTTT
Found at i:32516022 original size:14 final size:14
Alignment explanation
Indices: 32515993--32516038 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
32515983 ATTTTACAGC
*
32515993 ATATACGAATAAAT
1 ATATACAAATAAAT
* *
32516007 ATTTACAAATATAT
1 ATATACAAATAAAT
32516021 ATATACAAATACAAT
1 ATATACAAATA-AAT
32516036 ATA
1 ATA
32516039 CCAGTAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 21 0.81
15 5 0.19
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.33
Consensus pattern (14 bp):
ATATACAAATAAAT
Found at i:32516814 original size:11 final size:12
Alignment explanation
Indices: 32516792--32516820 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
32516782 AAAAGAAATA
32516792 AAAACTGATTTT
1 AAAACTGATTTT
32516804 AAAAC-GATTTT
1 AAAACTGATTTT
32516815 AAAACT
1 AAAACT
32516821 TGAAGGACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.34
Consensus pattern (12 bp):
AAAACTGATTTT
Found at i:32519179 original size:29 final size:29
Alignment explanation
Indices: 32519131--32519188 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
32519121 AAAAATAGCT
32519131 CATTTCGTAAATAATT-AAAAAACCGGCC
1 CATTTCGTAAATAATTAAAAAAACCGGCC
*
32519159 CATTTCGGTAAAT-TTTGAAAAAAACCGGCC
1 CATTTC-GTAAATAATT-AAAAAAACCGGCC
32519189 TTTTTTGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 8 0.31
29 6 0.23
30 12 0.46
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.26
Consensus pattern (29 bp):
CATTTCGTAAATAATTAAAAAAACCGGCC
Found at i:32519515 original size:133 final size:133
Alignment explanation
Indices: 32519338--32519585 Score: 370
Period size: 133 Copynumber: 1.9 Consensus size: 133
32519328 ACCGGGGAAA
* * *
32519338 TAGAGTTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTTGATC
1 TAGAATTACCGGCTTCAATATACTCCACTGCAACCACAGGGAGGTAAAATCCACCATCTTTGATC
* * * * *
32519403 TACTTCACTATTGCTTAGGGAGATAATATCTGTAATCTTCAATCTATTCCATTGTAACCTCAGGG
66 TACTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCATTGTAACCTCAGGG
32519468 AGG
131 AGG
* * **
32519471 TAGAATTACCGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATC
1 TAGAATTACCGGCTTCAATATACTCCACTGCAACCACAGGGAGGTAAAATCCACCATCTTTGATC
* *
32519536 TGCTCCGCTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCC
66 TACTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCC
32519586 GCTGCTGCCT
Statistics
Matches: 101, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
133 101 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (133 bp):
TAGAATTACCGGCTTCAATATACTCCACTGCAACCACAGGGAGGTAAAATCCACCATCTTTGATC
TACTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCATTGTAACCTCAGGG
AGG
Found at i:32519996 original size:40 final size:40
Alignment explanation
Indices: 32519952--32520031 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
32519942 AGTGTTGCGT
32519952 TGAATCCGTTTTCCTTGCAGGTATGGCGGTCGTAGAGGTG
1 TGAATCCGTTTTCCTTGCAGGTATGGCGGTCGTAGAGGTG
* *
32519992 TGAATCCGTTTTTCTTGCAGGTGTGGCGGTCGTAGAGGTG
1 TGAATCCGTTTTCCTTGCAGGTATGGCGGTCGTAGAGGTG
32520032 CAATTTACGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.14, C:0.16, G:0.36, T:0.34
Consensus pattern (40 bp):
TGAATCCGTTTTCCTTGCAGGTATGGCGGTCGTAGAGGTG
Found at i:32522052 original size:22 final size:22
Alignment explanation
Indices: 32522010--32522052 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
32522000 ACAACTGAAG
**
32522010 AAAATAATAAATTGTGGATATT
1 AAAATAATAAATTGTAAATATT
32522032 AAAATAA-AAATGTGTAAATAT
1 AAAATAATAAAT-TGTAAATAT
32522053 ATCAAAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.33
Consensus pattern (22 bp):
AAAATAATAAATTGTAAATATT
Found at i:32522711 original size:92 final size:86
Alignment explanation
Indices: 32522537--32522720 Score: 271
Period size: 86 Copynumber: 2.1 Consensus size: 86
32522527 TAGTAAAATG
*
32522537 CCTAATAAATAGTGAGTATATAGATATAGATACACAAATTTATAAAAATTTAGAACAACTTAATT
1 CCTAATAAATAGTGAGTATATAGATATAGATACACAAATTTATAAAAATTCAGAACAACTTAATT
32522602 AATGAAAATCCTATTATCATT
66 AATGAAAATCCTATTATCATT
*
32522623 CCTAATAAATAGTGAGTATATAGATATAGATACACAAA-TTATACATGACATATTGACATAACAA
1 CCTAATAAATAGTGAGTATATAGATATAGATACACAAATTTATA-A--A-A-ATT--CAGAACAA
32522687 CTTAATTAATGAAAATCCTATTATCATT
59 CTTAATTAATGAAAATCCTATTATCATT
*
32522715 TCTAAT
1 CCTAAT
32522721 TAATTCATAA
Statistics
Matches: 88, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
85 5 0.06
86 39 0.44
88 1 0.01
89 1 0.01
90 3 0.03
92 39 0.44
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.34
Consensus pattern (86 bp):
CCTAATAAATAGTGAGTATATAGATATAGATACACAAATTTATAAAAATTCAGAACAACTTAATT
AATGAAAATCCTATTATCATT
Found at i:32537957 original size:12 final size:12
Alignment explanation
Indices: 32537921--32537960 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
32537911 TGAATAATAA
32537921 ATAATTAAAATT
1 ATAATTAAAATT
32537933 -TCAATT-AAA-T
1 AT-AATTAAAATT
32537943 ATAATTAAAATT
1 ATAATTAAAATT
32537955 ATAATT
1 ATAATT
32537961 CTAAATGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 5 0.21
11 8 0.33
12 11 0.46
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (12 bp):
ATAATTAAAATT
Found at i:32539378 original size:12 final size:12
Alignment explanation
Indices: 32539361--32539387 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32539351 AATTTAAATT
32539361 TGAGATGATTGA
1 TGAGATGATTGA
32539373 TGAGATGATTGA
1 TGAGATGATTGA
32539385 TGA
1 TGA
32539388 TTGTCCCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (12 bp):
TGAGATGATTGA
Found at i:32542940 original size:16 final size:15
Alignment explanation
Indices: 32542915--32542944 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32542905 AATTATTTTT
32542915 TAAAAATATATATTC
1 TAAAAATATATATTC
32542930 TAAAAATTATATATT
1 TAAAAA-TATATATT
32542945 TGCTTATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (15 bp):
TAAAAATATATATTC
Found at i:32545638 original size:63 final size:63
Alignment explanation
Indices: 32545487--32545678 Score: 206
Period size: 63 Copynumber: 3.0 Consensus size: 63
32545477 TGGTCCACAT
* *
32545487 GGCTTGGACACACGCTCATGTCTCT-GACCCGTGTGACTCAAATTCCAAACCAGTGAGTTACAC
1 GGCTTGGACACACGCCCATGTCTCTAG-CCCGTGTGACTCAAATTCCAAAACAGTGAGTTACAC
* * * * * * * **
32545550 AGCCTGGACACACGTCCGTGCCTCTAGCTCGTTTGACTCAAATTTTAAAACAGTGAGTTACAC
1 GGCTTGGACACACGCCCATGTCTCTAGCCCGTGTGACTCAAATTCCAAAACAGTGAGTTACAC
* * * * * **
32545613 GGCTTGGACACACACCCATATCTCTAGCCCGTGTGAATCTAATTCCAAAATAGTTTGTTACAC
1 GGCTTGGACACACGCCCATGTCTCTAGCCCGTGTGACTCAAATTCCAAAACAGTGAGTTACAC
32545676 GGC
1 GGC
32545679 CTGCCACACG
Statistics
Matches: 101, Mismatches: 27, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
63 100 0.99
64 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (63 bp):
GGCTTGGACACACGCCCATGTCTCTAGCCCGTGTGACTCAAATTCCAAAACAGTGAGTTACAC
Found at i:32546723 original size:29 final size:30
Alignment explanation
Indices: 32546686--32546744 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
32546676 TACGGTTTAA
*
32546686 TGTGAAATTGTATACAT-AAACTTTGATTT
1 TGTGAAATTGTATACATGAAAATTTGATTT
* * *
32546715 TGTGCAATTTTATATATGAAAATTTGATTT
1 TGTGAAATTGTATACATGAAAATTTGATTT
32546745 GATCCAATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (30 bp):
TGTGAAATTGTATACATGAAAATTTGATTT
Found at i:32547989 original size:20 final size:20
Alignment explanation
Indices: 32547964--32548026 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
32547954 AGGGTTTAAG
32547964 ATTTTTAAAATTTT-ATATAT
1 ATTTTTAAAATTTTAATA-AT
** *
32547984 ATTTTTTTATTTTTAATAAT
1 ATTTTTAAAATTTTAATAAT
* *
32548004 GTTTTTAAAA-TTTAATAGT
1 ATTTTTAAAATTTTAATAAT
32548023 ATTT
1 ATTT
32548027 ATAAGAAATT
Statistics
Matches: 33, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
19 11 0.33
20 19 0.58
21 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (20 bp):
ATTTTTAAAATTTTAATAAT
Found at i:32548633 original size:11 final size:11
Alignment explanation
Indices: 32548617--32548659 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 11
32548607 AGAAATTAAA
32548617 ATTTTAAAAAT
1 ATTTTAAAAAT
32548628 ATTTTAAAAAT
1 ATTTTAAAAAT
32548639 AATTTTTAAATAAT
1 -A-TTTTAAA-AAT
*
32548653 TTTTTAA
1 ATTTTAA
32548660 TATTAAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 11 0.39
12 7 0.25
13 7 0.25
14 3 0.11
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
ATTTTAAAAAT
Found at i:32550465 original size:46 final size:46
Alignment explanation
Indices: 32550393--32550761 Score: 594
Period size: 46 Copynumber: 8.0 Consensus size: 46
32550383 ATAATGCTAT
* * * *
32550393 AACTTAGTATGGTTTTCTTTACTGAAACACCATATCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
*
32550439 AACTCAGTATGGTTTTCTTCATTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
*
32550485 AACTCAGTATGGTTTTCCTCATTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
* * *
32550531 ATCTCAGTATGGTTTTCTTTACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
* * *
32550577 AACTCAGTATGGTTTTGTTCATTGAAATATCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
* * *
32550623 AACTCAGTATGATTTTCTTCATTGAAATACTATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
*
32550669 AACTCAGTATGGTTTTCTTCATTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
32550715 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
32550761 A
1 A
32550762 CTTTGCCATG
Statistics
Matches: 299, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 299 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
Found at i:32554873 original size:13 final size:13
Alignment explanation
Indices: 32554855--32554893 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
32554845 CTAAATCATA
32554855 ATTTTAGTAAAAT
1 ATTTTAGTAAAAT
*
32554868 ATTTTAGTAAAAC
1 ATTTTAGTAAAAT
*
32554881 ATTTTTGTAAAAT
1 ATTTTAGTAAAAT
32554894 CAAGAGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.46
Consensus pattern (13 bp):
ATTTTAGTAAAAT
Found at i:32559169 original size:17 final size:20
Alignment explanation
Indices: 32559127--32559164 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
32559117 TTTTCATTAC
*
32559127 GATATTTGATTTTTTTTCCA
1 GATATTTGATTTTTTCTCCA
32559147 GATATTTG-TTTTTTCTCC
1 GATATTTGATTTTTTCTCC
32559165 GTATTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.16, C:0.13, G:0.11, T:0.61
Consensus pattern (20 bp):
GATATTTGATTTTTTCTCCA
Found at i:32572490 original size:22 final size:22
Alignment explanation
Indices: 32572465--32572508 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32572455 GAAAACCTGA
32572465 AAACAAAAAACTCTCAAAATGT
1 AAACAAAAAACTCTCAAAATGT
* * *
32572487 AAACACAAAATTCTCTAAATGT
1 AAACAAAAAACTCTCAAAATGT
32572509 TTTATGAGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.18, G:0.05, T:0.23
Consensus pattern (22 bp):
AAACAAAAAACTCTCAAAATGT
Found at i:32577562 original size:23 final size:22
Alignment explanation
Indices: 32577535--32577583 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 22
32577525 AGACACTAAT
32577535 TTAA-TTAAAAAACTTAAAAAATA
1 TTAATTTAAAAAA--TAAAAAATA
32577558 TTAATTTTAAAAAATAAAAAATA
1 TTAA-TTTAAAAAATAAAAAATA
32577581 TTA
1 TTA
32577584 CTGTGAGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 16 0.67
25 8 0.33
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
TTAATTTAAAAAATAAAAAATA
Found at i:32578968 original size:27 final size:28
Alignment explanation
Indices: 32578928--32578996 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
32578918 CAAATTTTTT
32578928 TTAAAAAAT-AAAAAAGTATTTTAAAAA
1 TTAAAAAATAAAAAAAGTATTTTAAAAA
32578955 -TAAAAAATAAAAAAAGTATTTTAAAAA
1 TTAAAAAATAAAAAAAGTATTTTAAAAA
*
32578982 TTTTAAAAATAAAAA
1 -TTAAAAAATAAAAA
32578997 TAAATATATT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
26 8 0.21
27 18 0.47
29 12 0.32
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (28 bp):
TTAAAAAATAAAAAAAGTATTTTAAAAA
Found at i:32594001 original size:27 final size:26
Alignment explanation
Indices: 32593961--32594028 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 26
32593951 ACACACCGCA
32593961 GCTCTTTATGAGCTTCC-CATTTAAAG
1 GCTCTTTATGAGCTTCCTCA-TTAAAG
*
32593987 GCTCTTTCATGAGCTTCCTGATTAAAG
1 GCTCTTT-ATGAGCTTCCTCATTAAAG
32594014 GCTCTTTATGAGCTT
1 GCTCTTTATGAGCTT
32594029 TCTGATATGG
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 15 0.38
27 23 0.59
28 1 0.03
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.40
Consensus pattern (26 bp):
GCTCTTTATGAGCTTCCTCATTAAAG
Found at i:32594033 original size:26 final size:26
Alignment explanation
Indices: 32593961--32594034 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 26
32593951 ACACACCGCA
**
32593961 GCTCTTTATGAGC-TTCCCATTTAAAG
1 GCTCTTTATGAGCTTTCTGA-TTAAAG
*
32593987 GCTCTTTCATGAGCTTCCTGATTAAAG
1 GCTCTTT-ATGAGCTTTCTGATTAAAG
32594014 GCTCTTTATGAGCTTTCTGAT
1 GCTCTTTATGAGCTTTCTGAT
32594035 ATGGCTAGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.48
27 19 0.45
28 3 0.07
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.41
Consensus pattern (26 bp):
GCTCTTTATGAGCTTTCTGATTAAAG
Found at i:32597826 original size:5 final size:5
Alignment explanation
Indices: 32597811--32597839 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
32597801 CAATCCGGGC
32597811 CCAAA -CAAA CCAAA CCAAA CCAAA CCAAA
1 CCAAA CCAAA CCAAA CCAAA CCAAA CCAAA
32597840 TAAAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.62, C:0.38, G:0.00, T:0.00
Consensus pattern (5 bp):
CCAAA
Found at i:32599245 original size:3 final size:3
Alignment explanation
Indices: 32599237--32599270 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
32599227 TTTTCTGCAT
32599237 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
32599271 CTTTTTTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:32603846 original size:51 final size:49
Alignment explanation
Indices: 32603788--32604286 Score: 200
Period size: 44 Copynumber: 10.9 Consensus size: 49
32603778 CATCGTGGTG
* * *
32603788 AATCTTATTTCCCTAAAATTACAGTGGAACAGATTAAAGCTACAAGATAC
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAG-TAC
* ***
32603838 GAATCTTATCTCCTTAAAGTTGCAGTGGGGTAGATTAAAGCTAC----A-
1 -AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAGTAC
* * * *
32603883 AATCTTATTTCTCTGAAGTTGCAGTGGGACAGATTAAAGCTACAAGTTAC
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAG-TAC
* * ** * *
32603933 AAGTCTTATCTCCCTGAACTTGCAGTGGAGTAGATTAAAACCAC-AG---
1 AA-TCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAGTAC
* * * ** * *
32603979 -ATCTTCTCTCACTGAAGTTGCAGTGGAGTAGATTAAAACCAC-AG---
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAGTAC
* * * * * * *
32604023 -GTCTTCTCTCACTGAAGTTGCAGTGGACCAGATTGAAGTTAC----A-
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAGTAC
* *
32604066 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC----A-
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAGTAC
* * * *
32604110 AATCTTATCTCCTTGATGTTGCAATAGAGAA-A-ATTAAAGCTAC----A-
1 AATCTTATCTCCCTAAAGTTGCAGT-G-GAACAGATTAAAGCTACAAGTAC
* * * *
32604154 AATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAGTTAC----A-
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAGTAC
* * * * *
32604198 AATCTTATCTCTCTGAAGGTGCAGTGGAGCAGAATAAAGCTAC----A-
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAGTAC
* * * *
32604242 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTAAAGTTACAA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAA
32604287 ATCTTATTTC
Statistics
Matches: 374, Mismatches: 59, Indels: 35
0.80 0.13 0.07
Matches are distributed among these distances:
42 3 0.01
43 2 0.01
44 289 0.77
45 3 0.01
46 3 0.01
49 1 0.00
50 4 0.01
51 69 0.18
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (49 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAGTAC
Found at i:32603902 original size:44 final size:44
Alignment explanation
Indices: 32603839--32604662 Score: 722
Period size: 44 Copynumber: 18.6 Consensus size: 44
32603829 ACAAGATACG
* * * *
32603839 AATCTTATCTCCTTAAAGTTGCAGTGGGGTAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* *
32603883 AATCTTATTTCTCTGAAGTTGCAGTGG-GACAGATTAAAGCTACAAGTTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTAAAGCTAC-----A
* * * *
32603932 CAAGTCTTATCTCCCTGAACTTGCAGTGGAGTAGATTAAAACCACA
1 -AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * * * *
32603978 GATCTTCTCTCACTGAAGTTGCAGTGGAGTAGATTAAAACCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
** * * * * *
32604022 GGTCTTCTCTCACTGAAGTTGCAGTGGACCAGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
32604066 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * * * *
32604110 AATCTTATCTCCTTGATGTTGCAATAGAGAAAATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * *
32604154 AATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * *
32604198 AATCTTATCTCTCTGAAGGTGCAGTGGAGCAGAATAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* *
32604242 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * * * *
32604286 AATCTTATTTCCTTAAAGTTGTAGTGGAGCAGATTGAAA-TTGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCTACA
* * * * *
32604330 AGTCTTATCTCCTTGAAGTTGTAGTAGAGTAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * * * * * * *
32604374 TATCTTCTCTCCATAAAGTTACAGTGGAGCAGACTGAAGTTGCAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC-A
* * * * *
32604419 AATTTTATCTCCCTAAAGTTGAAGTGGAGCAGATTGAAGCTGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * * * *
32604463 AATCTTATCTCCCTAAAGTTACGGTGGAGTAGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * *
32604507 AATCTTATCTCTCTGAAGTTGCAGTGGAGC-GATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * *
32604550 AATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACGACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * ** * * * * * *
32604594 AGTCTAATCTCTTTAAAGTTGTAATGGAGTAGATTGAAGCAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
*
32604638 AATTCTGTA-C-CTCTGAAGTTGCAGT
1 AA-TCT-TATCTCCCTGAAGTTGCAGT
32604663 AGGTTAGAAT
Statistics
Matches: 640, Mismatches: 125, Indels: 30
0.81 0.16 0.04
Matches are distributed among these distances:
43 44 0.07
44 513 0.80
45 44 0.07
46 2 0.00
49 1 0.00
50 2 0.00
51 33 0.05
52 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
Found at i:32608804 original size:3 final size:3
Alignment explanation
Indices: 32608757--32608835 Score: 52
Period size: 3 Copynumber: 25.3 Consensus size: 3
32608747 TATTTTTTGC
* * * * * *
32608757 TAT TAT TGT TAT TTT TAA TAT TAC TAT TAC TAT TAT T-G TATT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
*
32608802 TAT TAT TACT TACCT TAT TAT TAT TAT AAT TAT T
1 TAT TAT TA-T TA--T TAT TAT TAT TAT TAT TAT T
32608836 TATTCATTCA
Statistics
Matches: 58, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
2 1 0.02
3 48 0.83
4 5 0.09
5 4 0.07
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:32608821 original size:30 final size:29
Alignment explanation
Indices: 32608756--32608828 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 29
32608746 TTATTTTTTG
32608756 CTATTATTGTTATTTTTAATATTACTATTA
1 CTATTATTGTTATTTTTAATATTAC-ATTA
*
32608786 CTATTATTG-TATTTATTATTATTAC-TTA
1 CTATTATTGTTATTT-TTAATATTACATTA
*
32608814 CCTTATTATTATTAT
1 -C-TATTATTGTTAT
32608829 AATTATTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
28 3 0.08
29 6 0.16
30 25 0.68
31 3 0.08
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.60
Consensus pattern (29 bp):
CTATTATTGTTATTTTTAATATTACATTA
Found at i:32608921 original size:27 final size:27
Alignment explanation
Indices: 32608883--32608936 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
32608873 TATATACATG
*
32608883 CATACTAGATGTGTCCATGGGCCGGGC
1 CATACCAGATGTGTCCATGGGCCGGGC
32608910 CATACCAGATGTGTCCATGGGCCGGGC
1 CATACCAGATGTGTCCATGGGCCGGGC
32608937 GGCCCGGCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.20
Consensus pattern (27 bp):
CATACCAGATGTGTCCATGGGCCGGGC
Found at i:32609524 original size:17 final size:17
Alignment explanation
Indices: 32609486--32609527 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
32609476 ATACATACTT
*
32609486 ATATATATTTTTATATT
1 ATATATATTTTTATATC
*
32609503 TTATA-ATTTTTATATAC
1 ATATATATTTTTATAT-C
32609520 ATATATAT
1 ATATATAT
32609528 ACACATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 10 0.50
17 8 0.40
18 2 0.10
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
ATATATATTTTTATATC
Found at i:32619870 original size:4 final size:4
Alignment explanation
Indices: 32619852--32619893 Score: 68
Period size: 4 Copynumber: 10.5 Consensus size: 4
32619842 GGATTTTGGG
32619852 GAAA GTAAA -AAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GA
1 GAAA G-AAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GA
32619894 GAATGTAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 3 0.08
4 30 0.83
5 3 0.08
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (4 bp):
GAAA
Found at i:32623465 original size:3 final size:3
Alignment explanation
Indices: 32623457--32623488 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
32623447 GAACCATCAT
32623457 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
32623489 TTATTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:32623493 original size:3 final size:3
Alignment explanation
Indices: 32623487--32623521 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
32623477 ATAATAATAA
32623487 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
32623522 CATTAAACCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:32624189 original size:17 final size:18
Alignment explanation
Indices: 32624158--32624191 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32624148 GGATTTATAA
32624158 AAAAATGGAAACAAAAAT
1 AAAAATGGAAACAAAAAT
*
32624176 AAAAAT-GAATCAAAAA
1 AAAAATGGAAACAAAAA
32624192 ATAACACAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.74, C:0.06, G:0.09, T:0.12
Consensus pattern (18 bp):
AAAAATGGAAACAAAAAT
Found at i:32627325 original size:150 final size:148
Alignment explanation
Indices: 32627039--32627846 Score: 1045
Period size: 150 Copynumber: 5.3 Consensus size: 148
32627029 GCACCAACAT
* * * * *
32627039 CCTTATTTTGGCCCTTTATTCGTATTTTTTTCCAAATTTTATTACTTTAAAAAATATACTATTTT
1 CCTTATTTCGGCCC-TTGTTCGTATTTTTTCCCAGATTTTATTACTTTAAAAAATATATTATTTT
*
32627104 CTAATTTTATTATTTTACATTATTTTAATACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
65 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTA-TGTGTTTT
32627169 TTAAATAAA-TT-AAAAAAC
129 TTAAATAAATTTAAAAAAAC
*
32627187 CCTTATTTCGGCCCTTGTTCGTATTTTTTCCCGGATTTTATTACTTTCAATAAAAATATATTATT
1 CCTTATTTCGGCCCTTGTTCGTATTTTTTCCCAGATTTTATTACTTT--A-AAAAATATATTATT
* *
32627252 TTCGT-ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATATATTAATTTACTGTGT
63 TTC-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTA-TGTGT
32627316 TTTTTAAATAAATTTAAAAAAAAAC
126 TTTTTAAATAAATTT--AAAAAAAC
* * * * * *
32627341 TCTTATTTCGGCCATTTGTTTGTATTTTTTCCCCCGATTTTATTGC-TTAAAAAA-ATACTATTT
1 CCTTATTTCGGCC-CTTGTTCGTATTTTTT-CCCAGATTTTATTACTTTAAAAAATATATTATTT
* *
32627404 TCTAATTTCATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATCCATTTA-GTGTTTT
64 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTATGTGTTTT
*
32627468 TTAAATAAATTTTTTAAAAAAC
129 TTAAATAAA--TTTAAAAAAAC
* *
32627490 CCTTATTTCGGCTCTTTGTTCGTATTTTTCTCCCAAATTTTATTACTTTCAATAAAAATATATTA
1 CCTTATTTCGGC-CCTTGTTCGTATTTTT-TCCCAGATTTTATTACTTT--A-AAAAATATATTA
* *
32627555 TTTTCGT-ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAATTGT
61 TTTTC-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTA-TGT
32627619 GTTTTTTAAATAAATTTAGTAAAAAAAC
124 GTTTTTTAAATAAA-TT--TAAAAAAAC
* *
32627647 CCTTATTTCGGCTCTTTGTTCGTATTTTTCCCCAGATTTTATTACTTTAAAAAATATATTATTTT
1 CCTTATTTCGGC-CCTTGTTCGTATTTTTTCCCAGATTTTATTACTTTAAAAAATATATTATTTT
*
32627712 CTAATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAATGTGTTTT
65 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTT-ATGTGTTTT
*
32627777 TTAAATAAATTTAAAAAAAA
129 TTAAATAAATTTAAAAAAAC
* * ** *
32627797 ACTTATTTCGGCCCTTTATTCGTATTTTTTTCTTAGATTTTATTATTTTA
1 CCTTATTTCGGCCC-TTGTTCGTA-TTTTTTCCCAGATTTTATTACTTTA
32627847 CATTATTTTA
Statistics
Matches: 586, Mismatches: 45, Indels: 55
0.85 0.07 0.08
Matches are distributed among these distances:
147 29 0.05
148 13 0.02
149 62 0.11
150 115 0.20
151 86 0.15
152 9 0.02
153 89 0.15
154 80 0.14
155 20 0.03
156 46 0.08
157 37 0.06
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (148 bp):
CCTTATTTCGGCCCTTGTTCGTATTTTTTCCCAGATTTTATTACTTTAAAAAATATATTATTTTC
TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTATGTGTTTTTT
AAATAAATTTAAAAAAAC
Found at i:32627611 original size:305 final size:304
Alignment explanation
Indices: 32627039--32627826 Score: 1212
Period size: 305 Copynumber: 2.6 Consensus size: 304
32627029 GCACCAACAT
* * * ** *
32627039 CCTTATTTTGGCCCTTTATTCGTATTTTTTTCCAAATTTTATTACTTTAAAAAATATACTATTTT
1 CCTTATTTCGGCTCTTTGTTCGTATTTTTCCCCAGATTTTATTACTTTAAAAAATATACTATTTT
*
32627104 CTAATTTTATTATTTTACATTATTTTAATACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
66 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTA-TGTGTTTT
* **
32627169 TTAAATAAA--TTAAAAAACCCTTATTTCGGCCCTTGTTCGTATTTTTTCCCGGATTTTATTACT
130 TTAAATAAATTTTAAAAAACCCTTATTTCGGCCTTTGTTCGTATTTTTTCCCAAATTTTATTACT
32627232 TTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAA
195 TTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAA
*
32627297 ATATATTAATTTACTGTGTTTTTTAAATAAATTTA-AAAAAAAAC
260 ATATATTAATTAACTGTGTTTTTTAAATAAATTTAGAAAAAAAAC
* * * *
32627341 TCTTATTTCGGC-CATTTGTTTGTATTTTTTCCCCCGATTTTATTGC-TTAAAAAA-ATACTATT
1 CCTTATTTCGGCTC-TTTGTTCGTA-TTTTTCCCCAGATTTTATTACTTTAAAAAATATACTATT
* *
32627403 TTCTAATTTCATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATCCATTTA-GTGTTT
64 TTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTATGTGTTT
32627467 TTTAAATAAATTTTTTAAAAAACCCTTATTTCGGCTCTTTGTTCGTATTTTTCTCCCAAATTTTA
129 TTTAAATAAA--TTTTAAAAAACCCTTATTTCGGC-CTTTGTTCGTATTTTT-TCCCAAATTTTA
32627532 TTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATTATGT
190 TTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATTATGT
* * *
32627597 TTGAAATGTATTAATTAATTGTGTTTTTTAAATAAATTTAGTAAAAAAAC
255 TTGAAATATATTAATTAACTGTGTTTTTTAAATAAATTTAGAAAAAAAAC
*
32627647 CCTTATTTCGGCTCTTTGTTCGTATTTTTCCCCAGATTTTATTACTTTAAAAAATATATTATTTT
1 CCTTATTTCGGCTCTTTGTTCGTATTTTTCCCCAGATTTTATTACTTTAAAAAATATACTATTTT
*
32627712 CTAATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAATGTGTTTT
66 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTT-ATGTGTTTT
* ** *
32627777 TTAAATAAATTTAAAAAAAAACTTATTTCGGCCCTTTATTCGTATTTTTT
130 TTAAATAAATTTTAAAAAACCCTTATTTCGG-CCTTTGTTCGTATTTTTT
32627827 TCTTAGATTT
Statistics
Matches: 440, Mismatches: 31, Indels: 26
0.89 0.06 0.05
Matches are distributed among these distances:
299 16 0.04
301 64 0.15
302 26 0.06
303 37 0.08
304 15 0.03
305 131 0.30
306 37 0.08
307 96 0.22
308 2 0.00
309 16 0.04
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.51
Consensus pattern (304 bp):
CCTTATTTCGGCTCTTTGTTCGTATTTTTCCCCAGATTTTATTACTTTAAAAAATATACTATTTT
CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTATGTGTTTTT
TAAATAAATTTTAAAAAACCCTTATTTCGGCCTTTGTTCGTATTTTTTCCCAAATTTTATTACTT
TCAATAAAAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAA
TATATTAATTAACTGTGTTTTTTAAATAAATTTAGAAAAAAAAC
Found at i:32627913 original size:118 final size:117
Alignment explanation
Indices: 32627703--32627945 Score: 357
Period size: 118 Copynumber: 2.1 Consensus size: 117
32627693 TTAAAAAATA
* * *
32627703 TATTATTTTCTAATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGTATTCATTTA
1 TATTTTTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCAATTA
* *
32627768 ATGTGTTTTTTAAATAAATTTAAAAAAAA-ACTTATTTCGGCCCTTTATTCG
66 ATATGTTTTTTAAATAAATTTAAAAAAAACACTTACTTCGGCCCTTTATTCG
32627819 TATTTTTTTCTTAGATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATT-AAT
1 TATTTTTTTC-TA-ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCAAT
* * *
32627883 TAATTATG-TTTTTAAATAAATTTAGTAAAAAACCCTTACTTCGGCCCTTTGTTCG
64 TAA-TATGTTTTTTAAATAAATTTA-AAAAAAACACTTACTTCGGCCCTTTATTCG
32627938 TATTTTTT
1 TATTTTTT
32627946 CCCCGGATTT
Statistics
Matches: 114, Mismatches: 8, Indels: 7
0.88 0.06 0.05
Matches are distributed among these distances:
116 9 0.08
117 23 0.20
118 55 0.48
119 27 0.24
ACGTcount: A:0.30, C:0.09, G:0.08, T:0.53
Consensus pattern (117 bp):
TATTTTTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCAATTA
ATATGTTTTTTAAATAAATTTAAAAAAAACACTTACTTCGGCCCTTTATTCG
Found at i:32627988 original size:151 final size:155
Alignment explanation
Indices: 32627824--32628124 Score: 432
Period size: 151 Copynumber: 2.0 Consensus size: 155
32627814 ATTCGTATTT
*
32627824 TTTTCTTAGATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAATTA
1 TTTTCTTAGATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAAGTA
* *
32627889 TGTTTTTAAATAAATTTAGTAAAAAA-CCCTTACTTCGGCCCTTTGTTCGTATTTTTTCCCCGGA
66 TGTTTTTAAAT-AATTTAGTAAAAAACCCCTTACTTCAGCCCTTTGTTCGTATTTTTTCCCCAGA
32627953 TTTTATTACTTT-AA-AAAAATACTA
130 TTTTATTACTTTCAATAAAAATACTA
* * * *
32627977 TTTTC-TA-ATTTTATTATTTTACATTATTTTAGTACGTTATGTTTGAAATGTATTCATTTAGTG
1 TTTTCTTAGATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAAGTA
* ** ** * *
32628040 TGTTTTTTAATTTTTTTTTAAAAAACCCCTTATTTCAGCCCTTTGTTCGTATTTTTTTCCCAGAT
66 TGTTTTTAAATAATTTAGTAAAAAACCCCTTACTTCAGCCCTTTGTTCGTATTTTTTCCCCAGAT
32628105 TTTATTACTTTCAATAAAAA
131 TTTATTACTTTCAATAAAAA
32628125 AAACACACTA
Statistics
Matches: 131, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
150 10 0.08
151 107 0.82
152 4 0.03
153 10 0.08
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.51
Consensus pattern (155 bp):
TTTTCTTAGATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAAGTA
TGTTTTTAAATAATTTAGTAAAAAACCCCTTACTTCAGCCCTTTGTTCGTATTTTTTCCCCAGAT
TTTATTACTTTCAATAAAAATACTA
Found at i:32628044 original size:269 final size:272
Alignment explanation
Indices: 32627562--32628111 Score: 892
Period size: 269 Copynumber: 2.0 Consensus size: 272
32627552 TTATTTTCGT
*
32627562 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAATTGTGTTTTTTA
1 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAATTATGTTTTTTA
* *
32627627 AATAAATTTAGTAAAAAAACCCTTATTTCGGCTCTTTGTTCGTATTTTTCCCCAGATTTTATTAC
66 AATAAATTTAGTAAAAAAACCCTTACTTCGGCCCTTTGTTCGTATTTTTCCCCAGATTTTATTAC
* *
32627692 TTTAAAAAATATATTATTTTCTAATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAAT
131 TTTAAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAAT
*
32627757 GTATTCATTTAATGTGTTTTTTAA-ATAAATTTAAAAAAAAACTTATTTCGGCCCTTTATTCGTA
196 GTATTCATTTAATGTGTTTTTTAATATAAATTTAAAAAAAAACTTATTTCAGCCCTTTATTCGTA
**
32627821 TTTTTTTCTTAG
261 TTTTTTTCCCAG
32627833 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAATTATG-TTTTTA
1 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAATTATGTTTTTTA
*
32627897 AATAAATTTAGT-AAAAAACCCTTACTTCGGCCCTTTGTTCGTATTTTTTCCCCGGATTTTATTA
66 AATAAATTTAGTAAAAAAACCCTTACTTCGGCCCTTTGTTCGTA-TTTTTCCCCAGATTTTATTA
*
32627961 CTTTAAAAAA-ATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACGTTATGTTTGAAA
130 CTTTAAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAA
* * *** *** *
32628025 TGTATTCATTTAGTGTGTTTTTTAATTTTTTTTTAAAAAACCCCTTATTTCAGCCCTTTGTTCGT
195 TGTATTCATTTAATGTGTTTTTTAATATAAATTTAAAAAAAAACTTATTTCAGCCCTTTATTCGT
32628090 ATTTTTTTCCCAG
260 ATTTTTTTCCCAG
32628103 ATTTTATTA
1 ATTTTATTA
32628112 CTTTCAATAA
Statistics
Matches: 258, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
269 104 0.40
270 97 0.38
271 57 0.22
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.52
Consensus pattern (272 bp):
ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAATTATGTTTTTTA
AATAAATTTAGTAAAAAAACCCTTACTTCGGCCCTTTGTTCGTATTTTTCCCCAGATTTTATTAC
TTTAAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAAT
GTATTCATTTAATGTGTTTTTTAATATAAATTTAAAAAAAAACTTATTTCAGCCCTTTATTCGTA
TTTTTTTCCCAG
Found at i:32628546 original size:3 final size:3
Alignment explanation
Indices: 32628533--32628572 Score: 71
Period size: 3 Copynumber: 13.0 Consensus size: 3
32628523 TAATATTAAC
32628533 ATA ACTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
32628573 GTAAAGACGA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:32636094 original size:61 final size:60
Alignment explanation
Indices: 32636011--32636156 Score: 141
Period size: 61 Copynumber: 2.4 Consensus size: 60
32636001 ATACACTTTA
* * * * * * * *
32636011 TCAATTTGATCCTAAATATAAAAAATTTAACAAATTTAGCCTTCAATATTTACAAAATTTG
1 TCAATTTAATTCTAATTCTAAAAAA-TCAACAAACTTAGCCCTCAACATTTACAAAATTTG
* * * * *
32636072 AT-ATTTTAGTTCTAATTCTAAAATCATCAACTAACTTCGCCCTCAACATTTACAAAATTTG
1 -TCAATTTAATTCTAATTCTAAAA-AATCAACAAACTTAGCCCTCAACATTTACAAAATTTG
32636133 TCAATTTAATTCTAATTCTAAAAA
1 TCAATTTAATTCTAATTCTAAAAA
32636157 TTTCAAAAAG
Statistics
Matches: 66, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
60 1 0.02
61 63 0.95
62 2 0.03
ACGTcount: A:0.41, C:0.16, G:0.04, T:0.38
Consensus pattern (60 bp):
TCAATTTAATTCTAATTCTAAAAAATCAACAAACTTAGCCCTCAACATTTACAAAATTTG
Found at i:32648182 original size:15 final size:15
Alignment explanation
Indices: 32648162--32648210 Score: 77
Period size: 15 Copynumber: 3.5 Consensus size: 15
32648152 TTGATTTGAT
32648162 TTGATTTCAATCAAA
1 TTGATTTCAATCAAA
32648177 TTGATTT---TCAAA
1 TTGATTTCAATCAAA
32648189 TTGATTTCAATCAAA
1 TTGATTTCAATCAAA
32648204 TTGATTT
1 TTGATTT
32648211 TATTTTATTC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
12 12 0.39
15 19 0.61
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (15 bp):
TTGATTTCAATCAAA
Found at i:32648182 original size:20 final size:20
Alignment explanation
Indices: 32648157--32648230 Score: 58
Period size: 20 Copynumber: 3.4 Consensus size: 20
32648147 ATATCTTGAT
32648157 TTGATTTGATTTCAATCAAA
1 TTGATTTGATTTCAATCAAA
32648177 TTGATTTTCAAATTGATTTCAATCAAA
1 TTGA---T----TTGATTTCAATCAAA
* * *
32648204 TTGATTTTATTTTATTCAAA
1 TTGATTTGATTTCAATCAAA
32648224 TTGATTT
1 TTGATTT
32648231 AAAGACTCCT
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
20 23 0.52
23 1 0.02
24 1 0.02
27 19 0.43
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.51
Consensus pattern (20 bp):
TTGATTTGATTTCAATCAAA
Found at i:32648198 original size:11 final size:12
Alignment explanation
Indices: 32648172--32648211 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 12
32648162 TTGATTTCAA
32648172 TCAAATTGATTT
1 TCAAATTGATTT
32648184 TCAAATTGATTT
1 TCAAATTGATTT
32648196 CAATCAAATTGATTT
1 ---TCAAATTGATTT
32648211 T
1 T
32648212 ATTTTATTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 13 0.52
15 12 0.48
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.47
Consensus pattern (12 bp):
TCAAATTGATTT
Found at i:32652880 original size:63 final size:62
Alignment explanation
Indices: 32652781--32652921 Score: 160
Period size: 63 Copynumber: 2.3 Consensus size: 62
32652771 TTTTAAGCCT
* * *** * **
32652781 AAACAGTGAGTTACACGGCCTGGATACATGTTCATGTCCCT-ACCCGTGTGG-CTTTTATACCAC
1 AAACAGTGAGTTACACAGCCTGGACACATACCCATGTCCCTGA-CCGTATGGTCTCGT-T-CCAC
*
32652844 AAACAGTGAGTTACACAGCCTGGGCACATACCCATGTCCCTGACCGTATGGTCTCGTTCCAC
1 AAACAGTGAGTTACACAGCCTGGACACATACCCATGTCCCTGACCGTATGGTCTCGTTCCAC
32652906 AAACAGTGAGTTACAC
1 AAACAGTGAGTTACAC
32652922 GACCCAAACA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
62 20 0.30
63 43 0.64
64 4 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (62 bp):
AAACAGTGAGTTACACAGCCTGGACACATACCCATGTCCCTGACCGTATGGTCTCGTTCCAC
Found at i:32654358 original size:91 final size:91
Alignment explanation
Indices: 32654203--32654387 Score: 361
Period size: 91 Copynumber: 2.0 Consensus size: 91
32654193 CATGTCATAA
*
32654203 TTGAATCTTGAATACATTCAAAACATCTAATAATATAAAGAAACTTGTAATTAATATATATTTCC
1 TTGAATCTTGAATACATTCAAAACATCTAATAATATAAAGAAACCTGTAATTAATATATATTTCC
32654268 AACTTTCTTTGAAAATTCACTCATCT
66 AACTTTCTTTGAAAATTCACTCATCT
32654294 TTGAATCTTGAATACATTCAAAACATCTAATAATATAAAGAAACCTGTAATTAATATATATTTCC
1 TTGAATCTTGAATACATTCAAAACATCTAATAATATAAAGAAACCTGTAATTAATATATATTTCC
32654359 AACTTTCTTTGAAAATTCACTCATCT
66 AACTTTCTTTGAAAATTCACTCATCT
32654385 TTG
1 TTG
32654388 TACGTTGTGG
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 93 1.00
ACGTcount: A:0.40, C:0.16, G:0.06, T:0.38
Consensus pattern (91 bp):
TTGAATCTTGAATACATTCAAAACATCTAATAATATAAAGAAACCTGTAATTAATATATATTTCC
AACTTTCTTTGAAAATTCACTCATCT
Found at i:32657566 original size:27 final size:27
Alignment explanation
Indices: 32657519--32657571 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
32657509 CGTGTTATAA
*
32657519 AAAAAAAAGATAGAGAGAATAAAGAAC
1 AAAAAAAAGATAGAAAGAATAAAGAAC
* *
32657546 AAAAAAAATAT-GAAAGCAATAGAGAA
1 AAAAAAAAGATAGAAAG-AATAAAGAA
32657572 TGTACTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.70, C:0.04, G:0.17, T:0.09
Consensus pattern (27 bp):
AAAAAAAAGATAGAAAGAATAAAGAAC
Found at i:32657823 original size:17 final size:18
Alignment explanation
Indices: 32657801--32657844 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
32657791 GGGATTTAAA
*
32657801 TAATTAATTAAA-AATTT
1 TAATTAAGTAAATAATTT
32657818 TAATTATAGTAAATAATTT
1 TAATTA-AGTAAATAATTT
32657837 TCAATTAA
1 T-AATTAA
32657845 AATACCTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 6 0.26
18 5 0.22
19 7 0.30
20 5 0.22
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
TAATTAAGTAAATAATTT
Found at i:32660961 original size:3 final size:3
Alignment explanation
Indices: 32660955--32660987 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
32660945 AATAGTATAG
32660955 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32660988 TGTGGGTGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:32663339 original size:11 final size:11
Alignment explanation
Indices: 32663323--32663349 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
32663313 TCTCAACAAA
32663323 AATTTCAAAAT
1 AATTTCAAAAT
32663334 AATTTCAAAAT
1 AATTTCAAAAT
32663345 AATTT
1 AATTT
32663350 TTTAAATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (11 bp):
AATTTCAAAAT
Found at i:32663410 original size:9 final size:9
Alignment explanation
Indices: 32663392--32663438 Score: 58
Period size: 9 Copynumber: 5.0 Consensus size: 9
32663382 ATTTTTATTT
32663392 TTAAAAAAA
1 TTAAAAAAA
*
32663401 TTATAAAAA
1 TTAAAAAAA
32663410 TTAAAAAAA
1 TTAAAAAAA
*
32663419 TCTAAAATATA
1 T-TAAAA-AAA
32663430 TTAAAAAAA
1 TTAAAAAAA
32663439 AGTTAAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 19 0.59
10 10 0.31
11 3 0.09
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (9 bp):
TTAAAAAAA
Found at i:32663413 original size:18 final size:20
Alignment explanation
Indices: 32663392--32663438 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
32663382 ATTTTTATTT
32663392 TTAAAAAAAT-TATAAA-A-A
1 TTAAAAAAATCTA-AAATATA
32663410 TTAAAAAAATCTAAAATATA
1 TTAAAAAAATCTAAAATATA
32663430 TTAAAAAAA
1 TTAAAAAAA
32663439 AGTTAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 13 0.50
19 3 0.12
20 10 0.38
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (20 bp):
TTAAAAAAATCTAAAATATA
Done.