Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 97 of 208
Found at i:32932432 original size:3 final size:3
Alignment explanation
Indices: 32932424--32932479 Score: 51
Period size: 3 Copynumber: 18.7 Consensus size: 3
32932414 AAACTAATAC
* * * * *
32932424 AAT AAT AAT ACCT -AT AAT AAT AAC AAC AAC AAT AAT AAT AGT AAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32932469 AAT AAT AAT AA
1 AAT AAT AAT AA
32932480 ATTAATTAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
2 1 0.02
3 43 0.96
4 1 0.02
ACGTcount: A:0.62, C:0.09, G:0.02, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:32933087 original size:16 final size:15
Alignment explanation
Indices: 32933059--32933092 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
32933049 AAGTGAAAAT
*
32933059 AAAAGAAAAAAAAGA
1 AAAAAAAAAAAAAGA
32933074 AAAAAAAAACAAAAGA
1 AAAAAAAAA-AAAAGA
32933090 AAA
1 AAA
32933093 CTAGAGAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAGA
Found at i:32933512 original size:13 final size:13
Alignment explanation
Indices: 32933496--32933520 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32933486 TGGGCCTGTA
32933496 ATAATGGACTTTG
1 ATAATGGACTTTG
32933509 ATAATGGACTTT
1 ATAATGGACTTT
32933521 TATTTTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (13 bp):
ATAATGGACTTTG
Found at i:32933536 original size:14 final size:15
Alignment explanation
Indices: 32933517--32933558 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
32933507 TGATAATGGA
32933517 CTTTTATTTTTTA-T
1 CTTTTATTTTTTAGT
*
32933531 CTTTTATTTATTAGGT
1 CTTTTATTTTTTA-GT
*
32933547 TTTTTATTTTTT
1 CTTTTATTTTTT
32933559 TTTGCTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 12 0.52
16 11 0.48
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.76
Consensus pattern (15 bp):
CTTTTATTTTTTAGT
Found at i:32938486 original size:16 final size:16
Alignment explanation
Indices: 32938465--32938506 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
32938455 AGTTTGGTTC
*
32938465 GCTGTAATGGAATAGA
1 GCTGTAATAGAATAGA
32938481 GCTGTAATAGAATAGA
1 GCTGTAATAGAATAGA
*
32938497 GGTGTAATAG
1 GCTGTAATAG
32938507 TAATTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.38, C:0.05, G:0.31, T:0.26
Consensus pattern (16 bp):
GCTGTAATAGAATAGA
Found at i:32939224 original size:120 final size:119
Alignment explanation
Indices: 32938732--32939430 Score: 1071
Period size: 119 Copynumber: 6.0 Consensus size: 119
32938722 TTAATCATAT
*
32938732 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT-ATAAAATTCTTAATATT
32938797 AAATATTCTTATATGAATTTACT-AAATCATAATATATAATACTATAAAATATAA
65 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
32938851 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
32938916 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
32938970 TTTAAAATAATTATTATCAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
32939035 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
32939089 TTTAAAATAATTATTATCAAATATAATTTAATAAAAATATATTAATTTATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATA-TAATTTATAAAATTCTTAATATT
32939154 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
65 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
32939209 TTTAAAATAATTATTATTAAATATAATTTAATAAAATTCT-TAATATTA-AATATTCTT-ATA-T
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAAT-TTATAAAATTCTTAATATT
* * * * *
32939270 GAAT-TTAC-TA-A--AA--T-C-ATAAT-AT-ATA-ATACTA-TAA--AACATAA
65 AAATATT-CTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
**
32939311 CCTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT-ATAAAATTCTTAATATT
* *
32939376 AAATATTCTTATATGAGTTTACTAAAATCATAATATATAATAATATAAAA-ATAA
65 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
32939430 T
1 T
32939431 ATATAATCTA
Statistics
Matches: 534, Mismatches: 22, Indels: 48
0.88 0.04 0.08
Matches are distributed among these distances:
102 44 0.08
103 5 0.01
104 10 0.02
105 8 0.01
106 8 0.01
107 6 0.01
108 5 0.01
109 1 0.00
110 2 0.00
112 3 0.01
113 1 0.00
114 5 0.01
115 6 0.01
116 8 0.01
117 8 0.01
118 54 0.10
119 243 0.46
120 117 0.22
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (119 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:32939252 original size:222 final size:220
Alignment explanation
Indices: 32939008--32939430 Score: 758
Period size: 222 Copynumber: 1.9 Consensus size: 220
32938998 TAATAAAAAT
32939008 ATATAATTTATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATA
1 ATATAATTTATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATA
* **
32939073 ATACTATAAAATATAATTTAAAATAATTATTATCAAATATAATTTAATAAAAATATATTAATTT-
66 ATACTATAAAACATAACCTAAAATAATTATTATCAAATATAATTTAATAAAAATATA-TAATTTA
*
32939137 ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAA
130 ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATAATATAA
32939202 AATATAATTTAAAATAATTATTATTAA
195 AA-ATAATTTAAAATAATTATTATTAA
32939229 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
1 ATATAATTT-ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
*
32939294 AATACTATAAAACATAACCTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTA
65 AATACTATAAAACATAACCTAAAATAATTATTATCAAATATAATTTAATAAAAATATATAATTTA
*
32939359 ATAAAATTCTTAATATTAAATATTCTTATATGAGTTTACTAAAATCATAATATATAATAATATAA
130 ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATAATATAA
32939424 AAATAAT
195 AAATAAT
32939431 ATATAATCTA
Statistics
Matches: 194, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
221 20 0.10
222 174 0.90
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (220 bp):
ATATAATTTATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATA
ATACTATAAAACATAACCTAAAATAATTATTATCAAATATAATTTAATAAAAATATATAATTTAA
TAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATAATATAAA
AATAATTTAAAATAATTATTATTAA
Found at i:32939304 original size:61 final size:61
Alignment explanation
Indices: 32939239--32939425 Score: 193
Period size: 61 Copynumber: 3.1 Consensus size: 61
32939229 ATATAATTTA
*
32939239 ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACT
1 ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATAAT
* ** * * * * * ** * * *
32939300 ATAAAA--CATAACCTAAAATAATTATTAT-TAAATATAATTTAATAAAAATATATAAT-TT
1 ATAAAATTCTTAATATTAAAT-ATTCTTATATGAATTTACTAAAATCATAATATATAATAAT
*
32939358 AATAAAATTCTTAATATTAAATATTCTTATATGAGTTTACTAAAATCATAATATATAATAAT
1 -ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATAAT
32939420 ATAAAA
1 ATAAAA
32939426 ATAATATATA
Statistics
Matches: 93, Mismatches: 27, Indels: 12
0.70 0.20 0.09
Matches are distributed among these distances:
58 1 0.01
59 36 0.39
60 14 0.15
61 41 0.44
62 1 0.01
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (61 bp):
ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATAAT
Found at i:32939412 original size:59 final size:59
Alignment explanation
Indices: 32939228--32939412 Score: 184
Period size: 64 Copynumber: 3.1 Consensus size: 59
32939218 ATTATTATTA
32939228 AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
1 AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
* * * * * * *
32939287 AATATATAATACTATAA-AACATAACCTAA-AATAATTATTATTAAATAT-AATTTAATAAAA--
1 -A-ATATAAT--T-TAATAAAAT-TCTTAATATTAAATATTCTT--ATATGAATTTACTAAAATC
32939347 AT
58 AT
*
32939349 -ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAGTTTACTAAAATCAT
1 AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
32939407 AATATA
1 AATATA
32939413 TAATAATATA
Statistics
Matches: 97, Mismatches: 15, Indels: 27
0.70 0.11 0.19
Matches are distributed among these distances:
55 4 0.04
56 17 0.18
57 15 0.15
58 2 0.02
59 12 0.12
60 1 0.01
61 7 0.07
62 2 0.02
63 15 0.15
64 18 0.19
65 4 0.04
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (59 bp):
AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
Found at i:32940878 original size:49 final size:49
Alignment explanation
Indices: 32940821--32940924 Score: 181
Period size: 49 Copynumber: 2.1 Consensus size: 49
32940811 AAAAAAAAAC
* * *
32940821 AAATTAAAATTAAGTTTAATATCATGAATCAAAAGGTGAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
32940870 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
32940919 AAATTA
1 AAATTA
32940925 TAACACATGA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.50, C:0.11, G:0.08, T:0.32
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
Found at i:32942793 original size:33 final size:33
Alignment explanation
Indices: 32942750--32942815 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
32942740 AAATTAAAAT
*
32942750 TTGTATGTATATGTATAATTGAGCTAAAATTAA
1 TTGTAGGTATATGTATAATTGAGCTAAAATTAA
32942783 TTGTAGGTATATGTATAATTGAGCTAAAATTAA
1 TTGTAGGTATATGTATAATTGAGCTAAAATTAA
32942816 AATTTCATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.03, G:0.17, T:0.41
Consensus pattern (33 bp):
TTGTAGGTATATGTATAATTGAGCTAAAATTAA
Found at i:32949647 original size:27 final size:28
Alignment explanation
Indices: 32949610--32949674 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
32949600 TGTTTTTTTA
* *
32949610 CTTTCACTTTCTTTTTC-TTTTTCATTT
1 CTTTCAATTTCTTTTTCATTGTTCATTT
*
32949637 CTTTCAATTTCTTTTTCATTGTTCGTTT
1 CTTTCAATTTCTTTTTCATTGTTCATTT
*
32949665 CTCTCAATTT
1 CTTTCAATTT
32949675 TTCCACAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
27 16 0.48
28 17 0.52
ACGTcount: A:0.11, C:0.22, G:0.03, T:0.65
Consensus pattern (28 bp):
CTTTCAATTTCTTTTTCATTGTTCATTT
Found at i:32957550 original size:50 final size:50
Alignment explanation
Indices: 32957438--32957684 Score: 228
Period size: 50 Copynumber: 4.8 Consensus size: 50
32957428 ATTTGGGTAA
* *
32957438 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
* *
32957494 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
32957544 AGAGGTCCCCCGAAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * ** * *
32957594 AGAACTCTCATGTAAGACCATATCTGGGGTATGGCATTGGCA--GTACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** *
32957643 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32957685 TGTTATTATC
Statistics
Matches: 159, Mismatches: 31, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.23
50 78 0.49
53 3 0.02
55 1 0.01
56 39 0.25
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:32961433 original size:46 final size:45
Alignment explanation
Indices: 32961349--32961745 Score: 238
Period size: 46 Copynumber: 8.6 Consensus size: 45
32961339 TTTGAGTACT
* * *
32961349 TCTGATCAAGTGATAAAGTGATAAGTGGT-AGCTTTAGCTACACTTA
1 TCTGATCAAGTGA-CAAGTGATAAGTGATAAG-TTCAGCTACACTTA
* *
32961395 TCTGATCAAGTGACAAGTGGA-AAGTGATAAGTAAT-AGCTTCGGC-TA
1 TCTGATCAAGTGACAAGT-GATAAGTGATAAGT--TCAGCTAC-ACTTA
* * * *
32961441 TACTTATC---TGATCAAGTGATAAGTTAT-AGCTTCGGCTATACTTA
1 T-CTGATCAAGTGA-CAAGTGATAAGTGATAAG-TTCAGCTACACTTA
32961485 TCTGATCAAGTGACAAAGTGATAAGTGAT-AGCTTCAGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGATAAGTGATAAG-TTCAGCTACACTTA
* *
32961531 TCTGATCAAATGACAAGTGGA-AAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAAGT-GATAAGTG---A-T-A-AG-TTCAGCTACACTTA
* * *
32961583 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAAGTGATAAGTG---A-T-A-AG-TTCAGCTACACTTA
* *
32961635 TCTGATCAAGAGACAAAGTGATAAGTGAT-AGCTTTAGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGATAAGTGATAAG-TTCAGCTACACTTA
* *
32961681 TCTGATCAA--GA-AA--CA-AAGTGATAAG-T-GGCTACACTTA
1 TCTGATCAAGTGACAAGTGATAAGTGATAAGTTCAGCTACACTTA
*
32961718 TCTGATCAAGGGACAAGTGATAAGTGAT
1 TCTGATCAAGTGACAAGTGATAAGTGAT
32961746 CATACGTAAG
Statistics
Matches: 293, Mismatches: 26, Indels: 67
0.76 0.07 0.17
Matches are distributed among these distances:
37 19 0.06
38 1 0.00
39 9 0.03
40 5 0.02
42 3 0.01
43 14 0.05
44 15 0.05
45 33 0.11
46 94 0.32
47 7 0.02
48 1 0.00
49 2 0.01
50 1 0.00
51 2 0.01
52 76 0.26
53 11 0.04
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGACAAGTGATAAGTGATAAGTTCAGCTACACTTA
Found at i:32961434 original size:52 final size:52
Alignment explanation
Indices: 32961363--32961464 Score: 150
Period size: 52 Copynumber: 2.0 Consensus size: 52
32961353 ATCAAGTGAT
** *
32961363 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
* * *
32961415 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAGT
1 AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT
32961465 TATAGCTTCG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (52 bp):
AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:32961470 original size:38 final size:38
Alignment explanation
Indices: 32961416--32961497 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
32961406 GACAAGTGGA
32961416 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
1 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
*
32961454 AAGTGATAAGTTATAGCTTCGGCTATACTTATCTGATC
1 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
32961492 AAGTGA
1 AAGTGA
32961498 CAAAGTGATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.34
Consensus pattern (38 bp):
AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
Found at i:32961556 original size:98 final size:92
Alignment explanation
Indices: 32961349--32961707 Score: 340
Period size: 98 Copynumber: 3.8 Consensus size: 92
32961339 TTTGAGTACT
* * * **
32961349 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-----
* * *
32961414 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
61 -AAAGTGATAAGTGATAGCTTCAGCTACACTTA
* *
32961447 TCTGAT-------C-AAGTGATAAGTTATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGT
32961504 GATAAGTGATAGCTTCAGCTACACTTA
66 GATAAGTGATAGCTTCAGCTACACTTA
32961531 TCTGATCAA-ATGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTG
1 TCTGATCAAGA-GAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTG
* *
32961595 ACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
59 AC------AAAGTGATAAGTGATAGCTTCAGCTACACTTA
** **
32961635 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAAACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGT
32961700 GATAAGTG
66 GATAAGTG
32961708 GCTACACTTA
Statistics
Matches: 223, Mismatches: 17, Indels: 48
0.77 0.06 0.17
Matches are distributed among these distances:
84 35 0.16
90 40 0.18
91 1 0.00
92 13 0.06
98 91 0.41
104 42 0.19
105 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.29
Consensus pattern (92 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGT
GATAAGTGATAGCTTCAGCTACACTTA
Found at i:32961564 original size:52 final size:51
Alignment explanation
Indices: 32961499--32961689 Score: 268
Period size: 52 Copynumber: 3.8 Consensus size: 51
32961489 ATCAAGTGAC
32961499 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAATGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAATGACAAGT-G
* *
32961551 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAATGACAAGTG
* *
32961602 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGA-GAC-----
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAA-ATGACAAGTG
*
32961649 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAA
32961690 GAAACAAAGT
Statistics
Matches: 130, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
46 38 0.29
51 1 0.01
52 91 0.70
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAATGACAAGTG
Found at i:32961743 original size:36 final size:37
Alignment explanation
Indices: 32961671--32961743 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
32961661 GATAGCTTTA
32961671 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
32961708 GCTACACTTATCTGATCAAGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
32961744 ATCATACGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
36 12 0.35
37 22 0.65
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:32965456 original size:24 final size:24
Alignment explanation
Indices: 32965409--32965458 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
32965399 CACTAAAAAC
* *
32965409 ATTAAAATAAATGTTTTCCATTAA
1 ATTAAAATAAATATTTTACATTAA
32965433 ATTAAAATAAATATTTATAC-TTAA
1 ATTAAAATAAATATTT-TACATTAA
32965457 AT
1 AT
32965459 AACACTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (24 bp):
ATTAAAATAAATATTTTACATTAA
Found at i:32965567 original size:14 final size:14
Alignment explanation
Indices: 32965544--32965577 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
32965534 TACAATATCC
*
32965544 AAATAATAACAATA
1 AAATAGTAACAATA
32965558 AAATAGTAACAATA
1 AAATAGTAACAATA
*
32965572 TAATAG
1 AAATAG
32965578 CAAAATGACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (14 bp):
AAATAGTAACAATA
Found at i:32972813 original size:4 final size:4
Alignment explanation
Indices: 32972804--32972842 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
32972794 AGATGCTCGT
32972804 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
32972843 AAAAGCATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:32972917 original size:4 final size:4
Alignment explanation
Indices: 32972908--32972959 Score: 81
Period size: 4 Copynumber: 13.5 Consensus size: 4
32972898 TGCCTAAGAG
*
32972908 ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAT ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
32972954 ATAC AT
1 ATAC AT
32972960 TTAGGGGTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
2 2 0.04
4 43 0.96
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (4 bp):
ATAC
Found at i:32973206 original size:9 final size:9
Alignment explanation
Indices: 32973189--32973218 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32973179 TGAAGCAAAG
32973189 TTTTT-ATT
1 TTTTTAATT
32973197 TTTTTAATT
1 TTTTTAATT
32973206 TTTTTAATT
1 TTTTTAATT
32973215 TTTT
1 TTTT
32973219 ACGGCATCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.24
9 16 0.76
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTAATT
Found at i:32973572 original size:16 final size:17
Alignment explanation
Indices: 32973542--32973573 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32973532 GTTATCTGAT
32973542 AATTAAATATTTAAAAA
1 AATTAAATATTTAAAAA
32973559 AATTAAAT-TTTAAAA
1 AATTAAATATTTAAAA
32973574 TCTAAAATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AATTAAATATTTAAAAA
Found at i:32977996 original size:15 final size:16
Alignment explanation
Indices: 32977970--32977999 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32977960 GGGGAAAATA
32977970 AAAAGCTTTGAGGAAT
1 AAAAGCTTTGAGGAAT
32977986 AAAAG-TTTGAGGAA
1 AAAAGCTTTGAGGAA
32978000 AAGTAAATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.47, C:0.03, G:0.27, T:0.23
Consensus pattern (16 bp):
AAAAGCTTTGAGGAAT
Found at i:32978377 original size:9 final size:9
Alignment explanation
Indices: 32978363--32978399 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
32978353 TATAGTTTGA
32978363 TATTCGAAT
1 TATTCGAAT
32978372 TATTCGAAT
1 TATTCGAAT
*
32978381 TATTCGAGT
1 TATTCGAAT
32978390 TATTCGAAT
1 TATTCGAAT
32978399 T
1 T
32978400 CAAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:32997238 original size:30 final size:30
Alignment explanation
Indices: 32997204--32997294 Score: 130
Period size: 30 Copynumber: 3.0 Consensus size: 30
32997194 TTCCTTATCT
*
32997204 TGAACTTCGATGCTATTCGTTTCCTTGCCA
1 TGAACTTCGAAGCTATTCGTTTCCTTGCCA
*
32997234 TGAACTTCGAAGCTATTCGTTTCCGTGCCA
1 TGAACTTCGAAGCTATTCGTTTCCTTGCCA
* *
32997264 TGAACTTC-AACACTATTTGTTTCCTTGCCA
1 TGAACTTCGAA-GCTATTCGTTTCCTTGCCA
32997294 T
1 T
32997295 TTGTTTCCTT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
29 2 0.04
30 53 0.96
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.38
Consensus pattern (30 bp):
TGAACTTCGAAGCTATTCGTTTCCTTGCCA
Found at i:33015082 original size:5 final size:5
Alignment explanation
Indices: 33015074--33015103 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
33015064 ATAGGTTACA
33015074 TGTAG TGTAG TGTAG TGTAG TGTAG TGTAG
1 TGTAG TGTAG TGTAG TGTAG TGTAG TGTAG
33015104 GGTGCCTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (5 bp):
TGTAG
Found at i:33015737 original size:153 final size:153
Alignment explanation
Indices: 33015459--33015753 Score: 536
Period size: 153 Copynumber: 1.9 Consensus size: 153
33015449 AATTTAGGGC
* *
33015459 TGAGGGATAGCGGTCGATGGCAGCATTTGGTAACCGGTGGCAACAAAAGTTCATCAGATTTTGGA
1 TGAGGGATAGCGGTCGATGGCAGCATTTGGTAACCGGTGGCAACAAAAGTTCACCAGAGTTTGGA
*
33015524 TTGCCATGGTGATTTTTTATAATTATTTTAAGGGTCAGTTCTTCATTACTTTAAAAAAATACTTC
66 TTGCCATGGTGATTTTTTATAATTATTTTAAGGGTCAGTTCTTCATTACTTAAAAAAAATACTTC
33015589 TGACTCCAAAAGTTCATCAGAGT
131 TGACTCCAAAAGTTCATCAGAGT
*
33015612 TGAGGGATGGCGGTCGATGGCAGCATTTGGTAACCGGTGGCAACAAAAGTTCACCAGAGTTTGGA
1 TGAGGGATAGCGGTCGATGGCAGCATTTGGTAACCGGTGGCAACAAAAGTTCACCAGAGTTTGGA
*
33015677 TTGCCATGGTGATTTTTTATAATTATTTTAAGGGTCTGTTCTTCATTACTTAAAAAAAATACTTC
66 TTGCCATGGTGATTTTTTATAATTATTTTAAGGGTCAGTTCTTCATTACTTAAAAAAAATACTTC
*
33015742 TGACTTCAAAAG
131 TGACTCCAAAAG
33015754 CATTTTTGAA
Statistics
Matches: 136, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
153 136 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (153 bp):
TGAGGGATAGCGGTCGATGGCAGCATTTGGTAACCGGTGGCAACAAAAGTTCACCAGAGTTTGGA
TTGCCATGGTGATTTTTTATAATTATTTTAAGGGTCAGTTCTTCATTACTTAAAAAAAATACTTC
TGACTCCAAAAGTTCATCAGAGT
Found at i:33016301 original size:13 final size:13
Alignment explanation
Indices: 33016285--33016347 Score: 65
Period size: 13 Copynumber: 4.8 Consensus size: 13
33016275 TTTAAGCCAA
33016285 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
33016298 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
*
33016311 ACTTTTTCACAA-C
1 AC-TTTTCAAAAGC
* **
33016324 ACTTTTTAAAAAT
1 ACTTTTCAAAAGC
33016337 ACTTTTCAAAA
1 ACTTTTCAAAA
33016348 ACATTACCAA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
12 7 0.17
13 26 0.63
14 8 0.20
ACGTcount: A:0.40, C:0.19, G:0.03, T:0.38
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:33016314 original size:26 final size:25
Alignment explanation
Indices: 33016285--33016347 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 25
33016275 TTTAAGCCAA
*
33016285 ACTTTTCAAAAGCACTTTTCAAAAGT
1 ACTTTTCAAAA-CACTTTTCAAAAAT
* *
33016311 ACTTTTTCACAACACTTTTTAAAAAT
1 AC-TTTTCAAAACACTTTTCAAAAAT
33016337 ACTTTTCAAAA
1 ACTTTTCAAAA
33016348 ACATTACCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 8 0.25
26 16 0.50
27 8 0.25
ACGTcount: A:0.40, C:0.19, G:0.03, T:0.38
Consensus pattern (25 bp):
ACTTTTCAAAACACTTTTCAAAAAT
Found at i:33017660 original size:19 final size:18
Alignment explanation
Indices: 33017597--33017660 Score: 85
Period size: 19 Copynumber: 3.4 Consensus size: 18
33017587 TCCCAACATT
33017597 ATTATTTTAATTTTTATAA
1 ATTATTTTAATTTTTA-AA
*
33017616 A-TATATTTAATTTTAAAA
1 ATTAT-TTTAATTTTTAAA
33017634 ATTATTTTGAATTTTTAAA
1 ATTATTTT-AATTTTTAAA
33017653 ATTATTTT
1 ATTATTTT
33017661 TTTTGTTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
18 9 0.22
19 31 0.77
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
ATTATTTTAATTTTTAAA
Found at i:33023164 original size:12 final size:12
Alignment explanation
Indices: 33023147--33023172 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33023137 TTTAGCCATG
33023147 TCCAACTTTTGT
1 TCCAACTTTTGT
33023159 TCCAACTTTTGT
1 TCCAACTTTTGT
33023171 TC
1 TC
33023173 TTATTTGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.27, G:0.08, T:0.50
Consensus pattern (12 bp):
TCCAACTTTTGT
Found at i:33029452 original size:21 final size:22
Alignment explanation
Indices: 33029402--33029452 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
33029392 AATTTATGTA
**
33029402 ATTATATTTGTTTATATGATTT
1 ATTATATTAATTTATATGATTT
* *
33029424 -TTAAATTAATTTATAT-TTTT
1 ATTATATTAATTTATATGATTT
33029444 ATTATATTA
1 ATTATATTA
33029453 GCTTTTAATG
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (22 bp):
ATTATATTAATTTATATGATTT
Found at i:33031916 original size:63 final size:63
Alignment explanation
Indices: 33031817--33031945 Score: 224
Period size: 63 Copynumber: 2.0 Consensus size: 63
33031807 CAACCTGATT
* *
33031817 TATAACTTAAATTTGGTAATTCAAACTCTATTAAGATGTGCCTCATT-CTCGATGTGATAAGAA
1 TATAACTTAAATTTAGTAATTCAAACTCTATTAAGATGCGCCTCATTCCT-GATGTGATAAGAA
33031880 TATAACTTAAATTTAGTAATTCAAACTCTATTAAGATGCGCCTCATTCCTGATGTGATAAGAA
1 TATAACTTAAATTTAGTAATTCAAACTCTATTAAGATGCGCCTCATTCCTGATGTGATAAGAA
33031943 TAT
1 TAT
33031946 CTCCATGTGA
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
63 61 0.97
64 2 0.03
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (63 bp):
TATAACTTAAATTTAGTAATTCAAACTCTATTAAGATGCGCCTCATTCCTGATGTGATAAGAA
Found at i:33033079 original size:16 final size:16
Alignment explanation
Indices: 33033058--33033113 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
33033048 TGAATTACTG
* *
33033058 ATTACAGTTTTATTCC
1 ATTACAGCTCTATTCC
*
33033074 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
*
33033090 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCC
33033106 ATTACAGC
1 ATTACAGC
33033114 GAACCAAACG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.41
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:33037499 original size:777 final size:774
Alignment explanation
Indices: 33035996--33037551 Score: 2808
Period size: 777 Copynumber: 2.0 Consensus size: 774
33035986 GCTGTTTTTC
*
33035996 TTTTCTTTTCTTTTTTTGAATTTTCTCACTCTTCTCAAAGTTTCTGACGTTGGTTTTCGCTTCTC
1 TTTTCTTTTCTTTTTTTGAATTTTCTCACTCTTCTCAAAGTTTCTGACATTGGTTTTCGCTTCTC
*
33036061 TCTTTCCTTCCATCAGTGATTTCTGTTTCTTTTTGTTTTGCTTTGCGTTCCTTACTCCGAATCAA
66 TCTGTCCTTCCATCAGTGATTTCTGTTTCTTTTTGTTTTGCTTTGCGTTCCTTACTCCGAATCAA
*
33036126 TTGTTTTAATCGTTGGAGTTCATTAATTTGTTTGTGCTTGTTCGTTGGGTAAGTAAGTTTGTTAG
131 TTATTTTAATCGTTGGAGTTCATTAATTTGTTTGTGCTTGTTCGTTGGGTAAGTAAGTTTGTTAG
33036191 GTTTTTTTTTTACTTTTCTTTTCGCTTGAATTAGCATAACGGTGTGAATTTGGGATGTAATGTTC
196 GTTTTTTTTTTACTTTTCTTTTCGCTTGAATTAGCATAACGGTGTGAATTTGGGATGTAATGTTC
*
33036256 CGTGGGATTATTGCGTAAGAGAAAACGATGAAGCAGTGGGTTTTGCTCCAACAGTCTAATCTGTG
261 CGTGGGATTATTGCGTAAGAGAAAACGATGAAGCAGTGCGTTTTGCTCCAACAGTCTAATCTGTG
*
33036321 CGTATGATCGAGTTTTGATAGTGGTAAGTTTGTGCATGTTGCTCGGTTTAGTATTGATAGTTTTG
326 CGTATGATCGAGTTTTGATAGTGGTAAGTTTGTGCATGTTGCTCGATTTAGTATTGATAGTTTTG
*
33036386 CAATTTGATTGTTAAAATGGTGTTGGGTATTCTGCTTTTAGGTGCTAGTGGTCTAAGGAGTGTTT
391 CAATTTGATTGTTAAAATGGTGTTAGGTATTCTGCTTTTAGGTGCTAGTGGTCTAAGGAGTGTTT
* *
33036451 TCGCATCAAAACTGAACTAGGTGTGCTCCCAAAATACAAAAAATCAAGTTTCGGTGAAAGCCGAA
456 TCGAATCAAAACTGAACTAGGTGTGCTCCCAAAATACAAAAAATCAAGTTTCGGTGAAAGACGAA
* * *
33036516 AAAACTCTTTATTGACGCCACACGGGCGTGTGCTTGGCCTTGTGGTTGGCCGTGTGTGAGACACG
521 AAAACTCTTTATTGACACCACACGGACGTGTGCTTAGCCTTGTGGTTGGCCGTGTGTGAGACACG
33036581 GGTGTATGTTTGACGAAGGTGCAGTCGTGCGTGAGACACGACTGTGTGGTGGTGTGAGTGTGTTC
586 GGTGTATGTTTGACGAAGGTGCAGTCGTGCGTGAGACACGACTGTGTGGTGGTGTGAGTGTGTTC
*
33036646 ATGTGGGCCACACAGGCTAGGCTAATTTAGGTGTGTGGGACACACAAGTATGTGAGTTTTGGGCC
651 ATGTGGGCCACACAGGCTAGGCTAATTTAGGCGTGTGGGACACACAAGTATGTGAGTTTTGGGCC
33036711 AGGCTGTGTGGGCCACATGGGTAAGGCCAACCGGGGCGTGTGGGCCCATAATTCTAAAA
716 AGGCTGTGTGGGCCACATGGGTAAGGCCAACCGGGGCGTGTGGGCCCATAATTCTAAAA
33036770 TTTTCTTTTCTTTTTTTTTGAATTTTCTCACTCTTCTCAAAGTTTCTGACATTGGTTTTCGCTTC
1 TTTTCTTTTC--TTTTTTTGAATTTTCTCACTCTTCTCAAAGTTTCTGACATTGGTTTTCGCTTC
* * *
33036835 TCTCTGTCCTTCCATCAGTGCTTTCTGTTTCTTTTTGTTTTGTTTTGCGTTCCTTACTTCGAATC
64 TCTCTGTCCTTCCATCAGTGATTTCTGTTTCTTTTTGTTTTGCTTTGCGTTCCTTACTCCGAATC
*
33036900 AATTATTTTAATTGTTGGAGTTCATTAATTTGTTTGTGCTTGTTCGTTGGGTAAGTAAGTTTGTT
129 AATTATTTTAATCGTTGGAGTTCATTAATTTGTTTGTGCTTGTTCGTTGGGTAAGTAAGTTTGTT
33036965 AGGGTTTTTTTTTTACTTTTCTTTTCGCTTGAATTAGCATAACGGTGTGAATTTGGGATGTAATG
194 A-GGTTTTTTTTTTACTTTTCTTTTCGCTTGAATTAGCATAACGGTGTGAATTTGGGATGTAATG
* * * *
33037030 TTCTGTGGGATTATTGCGTAGGAGAAAACGATGAAGCAGTGCGTTTTGCTCTAATAGTCTAATCT
258 TTCCGTGGGATTATTGCGTAAGAGAAAACGATGAAGCAGTGCGTTTTGCTCCAACAGTCTAATCT
*
33037095 GTGCGTACT-ATCGAGTTTTGATAGTGGTAAGTTTGTGCGTGTTGCTCGATTTAGTATTGATAGT
323 GTGCGTA-TGATCGAGTTTTGATAGTGGTAAGTTTGTGCATGTTGCTCGATTTAGTATTGATAGT
*
33037159 TTTGCAATTTGATTGTTAAAATGGTGTTAGGTATTCTGCTTTTAGGTGCTGGTGGTCTAAGGAGT
387 TTTGCAATTTGATTGTTAAAATGGTGTTAGGTATTCTGCTTTTAGGTGCTAGTGGTCTAAGGAGT
*
33037224 GTTTTTGAATCAAAACTGAACTAGGTGTGCTCCCAAAATACAAAAAATCAAGTTTCGGTGAAAGA
452 GTTTTCGAATCAAAACTGAACTAGGTGTGCTCCCAAAATACAAAAAATCAAGTTTCGGTGAAAGA
* *
33037289 CGAAAAAGCTCTTTGTTGACACCACACGGACGTGTGCTTAGCCTTGTGGTTGGCCGTGTGTGAGA
517 CGAAAAAACTCTTTATTGACACCACACGGACGTGTGCTTAGCCTTGTGGTTGGCCGTGTGTGAGA
33037354 CACGGGTGTATGTTTGACGAAGGTGCAGTCGTGCGTGAGACACGACTGTGTGGTGGTGTGAGTGT
582 CACGGGTGTATGTTTGACGAAGGTGCAGTCGTGCGTGAGACACGACTGTGTGGTGGTGTGAGTGT
*
33037419 GTTCATGTGGGCCACACAGGCTAGGCTAATTTAGGCGTGTGGGACACACAGGTATGTGAGTTTTG
647 GTTCATGTGGGCCACACAGGCTAGGCTAATTTAGGCGTGTGGGACACACAAGTATGTGAGTTTTG
* **
33037484 GGCCAGGCTGTGTGGGCTACATGGGTAAGGCCAACTTGGGCGTGTGGGCCCATAATTCTAAAA
712 GGCCAGGCTGTGTGGGCCACATGGGTAAGGCCAACCGGGGCGTGTGGGCCCATAATTCTAAAA
33037547 TTTTC
1 TTTTC
33037552 CTTAAGGTCG
Statistics
Matches: 749, Mismatches: 29, Indels: 5
0.96 0.04 0.01
Matches are distributed among these distances:
774 10 0.01
776 177 0.24
777 561 0.75
778 1 0.00
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.38
Consensus pattern (774 bp):
TTTTCTTTTCTTTTTTTGAATTTTCTCACTCTTCTCAAAGTTTCTGACATTGGTTTTCGCTTCTC
TCTGTCCTTCCATCAGTGATTTCTGTTTCTTTTTGTTTTGCTTTGCGTTCCTTACTCCGAATCAA
TTATTTTAATCGTTGGAGTTCATTAATTTGTTTGTGCTTGTTCGTTGGGTAAGTAAGTTTGTTAG
GTTTTTTTTTTACTTTTCTTTTCGCTTGAATTAGCATAACGGTGTGAATTTGGGATGTAATGTTC
CGTGGGATTATTGCGTAAGAGAAAACGATGAAGCAGTGCGTTTTGCTCCAACAGTCTAATCTGTG
CGTATGATCGAGTTTTGATAGTGGTAAGTTTGTGCATGTTGCTCGATTTAGTATTGATAGTTTTG
CAATTTGATTGTTAAAATGGTGTTAGGTATTCTGCTTTTAGGTGCTAGTGGTCTAAGGAGTGTTT
TCGAATCAAAACTGAACTAGGTGTGCTCCCAAAATACAAAAAATCAAGTTTCGGTGAAAGACGAA
AAAACTCTTTATTGACACCACACGGACGTGTGCTTAGCCTTGTGGTTGGCCGTGTGTGAGACACG
GGTGTATGTTTGACGAAGGTGCAGTCGTGCGTGAGACACGACTGTGTGGTGGTGTGAGTGTGTTC
ATGTGGGCCACACAGGCTAGGCTAATTTAGGCGTGTGGGACACACAAGTATGTGAGTTTTGGGCC
AGGCTGTGTGGGCCACATGGGTAAGGCCAACCGGGGCGTGTGGGCCCATAATTCTAAAA
Found at i:33037999 original size:6 final size:6
Alignment explanation
Indices: 33037980--33038025 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
33037970 TCTAGATATT
* * *
33037980 TGTATC TGTTTC TGCATC TGTATC TGTATC TGTATC CGTATC TGTA
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTA
33038026 CCTATAAAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.15, C:0.20, G:0.17, T:0.48
Consensus pattern (6 bp):
TGTATC
Found at i:33045309 original size:23 final size:23
Alignment explanation
Indices: 33045283--33045381 Score: 144
Period size: 23 Copynumber: 4.3 Consensus size: 23
33045273 ATAAGTGCCA
33045283 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
33045306 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
33045329 CACTGAAATGTAGTCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
33045352 CACTGAAATGTAGTCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
33045375 CACTGAT
1 CACTGAT
33045382 CAATAACACT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 70 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:33045350 original size:46 final size:46
Alignment explanation
Indices: 33045283--33045380 Score: 160
Period size: 46 Copynumber: 2.1 Consensus size: 46
33045273 ATAAGTGCCA
* *
33045283 CACTGATATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGAAATGTAGCCGTAGCTAC
* *
33045329 CACTGAAATGTAGTCGAAGCTACCACTGAAATGTAGTCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGAAATGTAGCCGTAGCTAC
33045375 CACTGA
1 CACTGA
33045381 TCAATAACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGAAATGTAGCCGTAGCTAC
Found at i:33055429 original size:3 final size:3
Alignment explanation
Indices: 33055415--33055478 Score: 119
Period size: 3 Copynumber: 21.3 Consensus size: 3
33055405 CCTTAAGAAT
*
33055415 TTC TTC TCC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
33055463 TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC T
33055479 ATTACTTTCC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:33058906 original size:20 final size:19
Alignment explanation
Indices: 33058880--33058934 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
33058870 AATATATATA
*
33058880 CTTTAATTAATTCATTAAT
1 CTTTAATTAATTAATTAAT
33058899 CATTTAATTAATCTAATTAAT
1 C-TTTAATTAAT-TAATTAAT
33058920 CTTTAATTAATTAAT
1 CTTTAATTAATTAAT
33058935 CTTAATCTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 5 0.15
20 20 0.61
21 8 0.24
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (19 bp):
CTTTAATTAATTAATTAAT
Found at i:33058910 original size:24 final size:22
Alignment explanation
Indices: 33058882--33058942 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 22
33058872 TATATATACT
33058882 TTAATTAATTCATTAATCATTTAA
1 TTAATTAA-TCATTAATC-TTTAA
33058906 TTAATCT-A--ATTAATCTTTAA
1 TTAAT-TAATCATTAATCTTTAA
33058926 TTAATTAATC-TTAATCT
1 TTAATTAATCATTAATCT
33058943 CAATAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
19 1 0.03
20 11 0.33
21 14 0.42
24 6 0.18
25 1 0.03
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAATTAATCATTAATCTTTAA
Found at i:33058932 original size:15 final size:16
Alignment explanation
Indices: 33058906--33058942 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
33058896 AATCATTTAA
33058906 TTAATCTAATTAATCT
1 TTAATCTAATTAATCT
33058922 TTAAT-TAATTAATC-
1 TTAATCTAATTAATCT
33058936 TTAATCT
1 TTAATCT
33058943 CAATAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 10 0.50
16 5 0.25
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (16 bp):
TTAATCTAATTAATCT
Found at i:33059326 original size:4 final size:4
Alignment explanation
Indices: 33059317--33059364 Score: 57
Period size: 4 Copynumber: 12.2 Consensus size: 4
33059307 TGTTTAATAT
33059317 ATTA ATTA ATTA ATTA ATTA A-TA ATTTA ATTA ATCT- -TTA ATTA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA A-TTA ATTA AT-TA ATTA ATTA ATTA
33059364 A
1 A
33059365 CCTTAATCTC
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
2 1 0.03
3 4 0.10
4 30 0.77
5 4 0.10
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:33059730 original size:15 final size:16
Alignment explanation
Indices: 33059697--33059741 Score: 67
Period size: 15 Copynumber: 2.9 Consensus size: 16
33059687 ATTAAATTTT
33059697 ATTAATTGAGATT-AAG
1 ATTAATT-AGATTAAAG
33059713 ATTAATTA-ATTAAAG
1 ATTAATTAGATTAAAG
33059728 ATTAATTAGATTAA
1 ATTAATTAGATTAA
33059742 TTAAATGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 3 0.11
15 12 0.44
16 12 0.44
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (16 bp):
ATTAATTAGATTAAAG
Found at i:33059740 original size:20 final size:19
Alignment explanation
Indices: 33059713--33059767 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
33059703 TGAGATTAAG
33059713 ATTAATTAATTAAAGATTA
1 ATTAATTAATTAAAGATTA
33059732 ATTAGATTAATTAAATGATTA
1 ATTA-ATTAATTAAA-GATTA
*
33059753 ATGAATTAATTAAAG
1 ATTAATTAATTAAAG
33059768 TATATATATT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 5 0.15
20 20 0.61
21 8 0.24
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (19 bp):
ATTAATTAATTAAAGATTA
Found at i:33062601 original size:71 final size:71
Alignment explanation
Indices: 33062508--33062652 Score: 218
Period size: 71 Copynumber: 2.0 Consensus size: 71
33062498 AGAGTACCAA
* * * * * *
33062508 TAGAAGTGCAAGGGATGTTGAACTTTGGCTACTGATTTGACTTGTTTCGGTAGAAGTCCTCAAGG
1 TAGAAGTGCAAGAGATGCTGAACCTTGGCTACTAACTTAACTTGTTTCGGTAGAAGTCCTCAAGG
33062573 TATCGG
66 TATCGG
* *
33062579 TAGAAGTGTAAGAGATGCTGAACCTTGGCTACTAACTTAACTTGTTTTGGTAGAAGTCCTCAAGG
1 TAGAAGTGCAAGAGATGCTGAACCTTGGCTACTAACTTAACTTGTTTCGGTAGAAGTCCTCAAGG
33062644 TATCGG
66 TATCGG
33062650 TAG
1 TAG
33062653 CACTTTAGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (71 bp):
TAGAAGTGCAAGAGATGCTGAACCTTGGCTACTAACTTAACTTGTTTCGGTAGAAGTCCTCAAGG
TATCGG
Found at i:33072556 original size:129 final size:129
Alignment explanation
Indices: 33072322--33072565 Score: 452
Period size: 129 Copynumber: 1.9 Consensus size: 129
33072312 TACACCAATC
33072322 TATTATTTGAATTATTCGAGTCATTTAAATTGTAAAATTCAACTCGACTCGAACTCGAAACTCGA
1 TATTATTTGAATTATTCGAGTCATTTAAATTGTAAAATTCAACTCGACTCGAACTCGAAACTCGA
* *
33072387 ATTACTTATTCGAGTTGGCTCAAATAACTCGATTCGATTAACTTAAAATTTGAATTTTTTAATA
66 ATTACTTATTCAAATTGGCTCAAATAACTCGATTCGATTAACTTAAAATTTGAATTTTTTAATA
*
33072451 TATTATTTGAATTATTCGAGTCATTTAAATTGTAAAATTCAACTCGACTCGAATTCGAAACTCGA
1 TATTATTTGAATTATTCGAGTCATTTAAATTGTAAAATTCAACTCGACTCGAACTCGAAACTCGA
*
33072516 ATTACTTATTCAAATTGGCTCAAATAACTCGATTCTATTAACTTAAAATT
66 ATTACTTATTCAAATTGGCTCAAATAACTCGATTCGATTAACTTAAAATT
33072566 CAAAAAAAAT
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
129 111 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.39
Consensus pattern (129 bp):
TATTATTTGAATTATTCGAGTCATTTAAATTGTAAAATTCAACTCGACTCGAACTCGAAACTCGA
ATTACTTATTCAAATTGGCTCAAATAACTCGATTCGATTAACTTAAAATTTGAATTTTTTAATA
Found at i:33076253 original size:4 final size:4
Alignment explanation
Indices: 33076246--33076294 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
33076236 AAAAAGGAGT
*
33076246 AATA AATA AATG AATA AACTA AAT- AAT- AATA AAT- AATAA AATA AATA
1 AATA AATA AATA AATA AA-TA AATA AATA AATA AATA AAT-A AATA AATA
33076293 AA
1 AA
33076295 CCAAGGCTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
3 9 0.23
4 23 0.59
5 7 0.18
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:33076263 original size:12 final size:11
Alignment explanation
Indices: 33076245--33076293 Score: 64
Period size: 12 Copynumber: 4.3 Consensus size: 11
33076235 TAAAAAGGAG
33076245 TAATAAATAAA
1 TAATAAATAAA
33076256 TGAATAAACTAAA
1 T-AATAAA-TAAA
33076269 TAAT-AATAAA
1 TAATAAATAAA
33076279 TAATAAAATAAA
1 TAAT-AAATAAA
33076291 TAA
1 TAA
33076294 ACCAAGGCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
10 8 0.24
11 3 0.09
12 18 0.53
13 5 0.15
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (11 bp):
TAATAAATAAA
Found at i:33078513 original size:22 final size:20
Alignment explanation
Indices: 33078488--33078530 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
33078478 AAACACAATA
33078488 ACAAGTCAATATTCTAATATTC
1 ACAA-TCAA-ATTCTAATATTC
* *
33078510 ACAATCAAATTTTATTATTC
1 ACAATCAAATTCTAATATTC
33078530 A
1 A
33078531 TTCCTGATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 4 0.21
22 4 0.21
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (20 bp):
ACAATCAAATTCTAATATTC
Found at i:33079672 original size:18 final size:18
Alignment explanation
Indices: 33079646--33079683 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
33079636 TTTTACACCC
*
33079646 ATATTTTTTAA-TCTTATT
1 ATATATTTTAAGT-TTATT
33079664 ATATATTTTAAGTTTATT
1 ATATATTTTAAGTTTATT
33079682 AT
1 AT
33079684 GCTCCATCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (18 bp):
ATATATTTTAAGTTTATT
Found at i:33084642 original size:10 final size:11
Alignment explanation
Indices: 33084627--33084664 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
33084617 AAATAAATCA
33084627 TTTCTCT-AAT
1 TTTCTCTCAAT
33084637 TTTCTCTCAAT
1 TTTCTCTCAAT
* *
33084648 TTCCTCTCAAA
1 TTTCTCTCAAT
33084659 TTTCTC
1 TTTCTC
33084665 CTAAATCCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 7 0.29
11 17 0.71
ACGTcount: A:0.18, C:0.29, G:0.00, T:0.53
Consensus pattern (11 bp):
TTTCTCTCAAT
Found at i:33084695 original size:51 final size:52
Alignment explanation
Indices: 33084629--33084731 Score: 165
Period size: 51 Copynumber: 2.0 Consensus size: 52
33084619 ATAAATCATT
*
33084629 TCTCTAATTTTCTCTCAATTTCCTCTCAAATTTCTC-CTAAATCCCTATTTAA
1 TCTCTAATTTGCTCTCAATTTCCTCTCAAATTTCTCTC-AAATCCCTATTTAA
*
33084681 TCTC-AATTTGCTCTCAATTTCCTCTCGAATTTCTCTCAAATCCCTATTTAA
1 TCTCTAATTTGCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCCTATTTAA
33084732 AAGAGCTTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
51 43 0.90
52 5 0.10
ACGTcount: A:0.24, C:0.29, G:0.02, T:0.45
Consensus pattern (52 bp):
TCTCTAATTTGCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCCTATTTAA
Found at i:33084700 original size:22 final size:22
Alignment explanation
Indices: 33084675--33084719 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
33084665 CTAAATCCCT
33084675 ATTTAATCTC-AATTTGCTCTCA
1 ATTTAATCTCGAATTT-CTCTCA
**
33084697 ATTTCCTCTCGAATTTCTCTCA
1 ATTTAATCTCGAATTTCTCTCA
33084719 A
1 A
33084720 ATCCCTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.24, C:0.27, G:0.04, T:0.44
Consensus pattern (22 bp):
ATTTAATCTCGAATTTCTCTCA
Found at i:33084705 original size:11 final size:10
Alignment explanation
Indices: 33084681--33084719 Score: 51
Period size: 11 Copynumber: 3.6 Consensus size: 10
33084671 CCCTATTTAA
33084681 TCTCAATTTGC
1 TCTCAATTT-C
33084692 TCTCAATTTCC
1 TCTCAATTT-C
33084703 TCTCGAATTTC
1 TCTC-AATTTC
33084714 TCTCAA
1 TCTCAA
33084720 ATCCCTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 2 0.08
11 19 0.73
12 5 0.19
ACGTcount: A:0.21, C:0.31, G:0.05, T:0.44
Consensus pattern (10 bp):
TCTCAATTTC
Found at i:33087157 original size:105 final size:104
Alignment explanation
Indices: 33086893--33087275 Score: 453
Period size: 105 Copynumber: 3.6 Consensus size: 104
33086883 ATACGAAAGA
* * **
33086893 AAAAAAAACAAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCTGGCACCCAGTGTACAGTAC
1 AAAAAAAA-TAAAAAAAAA-TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTAC
* ** * *
33086958 CAAAAAAAATTTGTTTTTTTTATGTCAGAGTCAGATTTAAAAATACG
64 GAAAAAAAA-----TTTTTTCGTGTCAGAATCAGA-TAAAAAATACG
33087005 AAAAAAAATAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACGA
1 AAAAAAAATAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACGA
***
33087070 AGAAAAAAAAATTTCGTGTCAGAATCAGATAAAAAAATACG
66 A-AAAAAATTTTTTCGTGTCAGAATCAGAT-AAAAAATACG
33087111 AAAAAAAATAAAAAAAAA-TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACGA
1 AAAAAAAATAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACGA
****** *
33087175 ATTTTTTTTTTTTCGTGTAAGAATCAGATAAAAAATACG
66 AAAAAAATTTTTTCGTGTCAGAATCAGATAAAAAATACG
* * * *
33087214 AAAAAAATTTAAAAAAAATTTTTTGGTGTTGGCCTGTCAATGGCCGGCACCCAGTACACAGT
1 AAAAAAA-ATAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGT
33087276 GGGTCTGTTT
Statistics
Matches: 241, Mismatches: 26, Indels: 15
0.85 0.09 0.05
Matches are distributed among these distances:
103 17 0.07
104 27 0.11
105 88 0.37
106 42 0.17
110 44 0.18
111 15 0.06
112 8 0.03
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (104 bp):
AAAAAAAATAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACGA
AAAAAAATTTTTTCGTGTCAGAATCAGATAAAAAATACG
Found at i:33087510 original size:11 final size:11
Alignment explanation
Indices: 33087494--33087520 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
33087484 GGTGGGTGTC
33087494 GGCCATTGACA
1 GGCCATTGACA
33087505 GGCCATTGACA
1 GGCCATTGACA
33087516 GGCCA
1 GGCCA
33087521 GTACCCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.30, G:0.30, T:0.15
Consensus pattern (11 bp):
GGCCATTGACA
Found at i:33087722 original size:114 final size:113
Alignment explanation
Indices: 33087505--33088342 Score: 997
Period size: 114 Copynumber: 7.4 Consensus size: 113
33087495 GCCATTGACA
* * *
33087505 GGCCATTGACAGGCCAGTACCCAAAAAAAATATTTTTTA--TTTTTTTCGTATTTTTTTATTTGA
1 GGCCATTGACAGGCCAGCACCC--AAAAAATTTTTTTTATTTTTTTTTCGTA-TTTTTTATCTGA
* * *
33087568 TTTTGATACG-AAAAAAATAAATTTTTTTTTCTTCGTACTGTGTACTGGGTGCC
63 TTCTGACACGAAAAAAAATAAA--ATTTTTT-TTCGTACTGTGTACTGGGTGCC
33087621 GGCCATTGACAGGCCAGCACCC-AAAAATTTTTTTTATTTTTTTTTCGTATTTTTTATCTGATTC
1 GGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTTATTTTTTTTTCGTATTTTTTATCTGATTC
33087685 TGACACGAAAAAAAAATAAAATTTTTTTTTCGTACTGTGTACTGGGTGCC
66 TGACACG-AAAAAAAATAAAA-TTTTTTTTCGTACTGTGTACTGGGTGCC
* *
33087735 GGCCATTGACAGGCCAGCACCCAAAAATTTTATTTTTTTTATTTTTTTCGTATTTTTTTATCTGA
1 GGCCATTGACAGGCCAGCACCCAAAAAATTT-TTTTTATT-TTTTTTTCGTA-TTTTTTATCTGA
*
33087800 TTCTGACACG--AAAAAA-AAAA-----TTTCGTACTATGTACTGGGTGCC
63 TTCTGACACGAAAAAAAATAAAATTTTTTTTCGTACTGTGTACTGGGTGCC
*** *
33087843 GGCCATTGACAGGCCAGCACCCAAAAAA-AAATTTTA-TTTTGTTTCGTATTTTTTATCTGATTC
1 GGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTTATTTTTTTTTCGTATTTTTTATCTGATTC
*
33087906 TGACACGAAAAAAAAAATAAAAAAATTTTTTTTCGTACTGTGTACTGGGTGTC
66 TGACACG--AAAAAAAAT---AAAATTTTTTTTCGTACTGTGTACTGGGTGCC
*
33087959 GGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTT-TTAATTTTTTTCGTATTTTTTATCTAAT
1 GGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTTATT--TTTTTTTCGTATTTTTTATCTGAT
* *
33088023 TCTTACACGAAAAAAAATAAAAATTTTTTTCGTACTGTGTACTGGGTGCC
64 TCTGACACGAAAAAAAATAAAATTTTTTTTCGTACTGTGTACTGGGTGCC
*
33088073 GGCCATTGACAGGCCAGCACCCAAAAATATTTTTTTTATTTTTTTTT-ATATTTTTTTATCTGAT
1 GGCCATTGACAGGCCAGCACCCAAAAA-ATTTTTTTTATTTTTTTTTCGTA-TTTTTTATCTGAT
* ** * *
33088137 TCTGATACGAAAAAAAATAAAAAAAAATTTCTTCGTATTGTGTACTGGGTGCC
64 TCTGACACGAAAAAAAAT---AAAATTTTTTTTCGTACTGTGTACTGGGTGCC
* * *
33088190 GGCCATTGACAGGCCAACACCCAAAAAATTTTTTTTA--TTTTTTTCGTATTTTTAAATCTGACT
1 GGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTTATTTTTTTTTCGTATTTTT-TATCTGATT
* **
33088253 CTGACAC------AAA-AAAATTTTTTTTGGTACTGTACACTGGGTGCC
65 CTGACACGAAAAAAAATAAAATTTTTTTTCGTACTGTGTACTGGGTGCC
* *
33088295 GGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTTGTTTTTTTTTC
1 GGCCATTGACAGGCCAGCACCCAAAAA-ATTTTTTTTATTTTTTTTTC
33088343 TTTCGTATAT
Statistics
Matches: 638, Mismatches: 47, Indels: 82
0.83 0.06 0.11
Matches are distributed among these distances:
103 22 0.03
104 10 0.02
105 52 0.08
106 12 0.02
107 6 0.01
108 57 0.09
109 3 0.00
111 4 0.01
113 15 0.02
114 171 0.27
115 54 0.08
116 100 0.16
117 80 0.13
118 22 0.03
119 30 0.05
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.40
Consensus pattern (113 bp):
GGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTTATTTTTTTTTCGTATTTTTTATCTGATTC
TGACACGAAAAAAAATAAAATTTTTTTTCGTACTGTGTACTGGGTGCC
Found at i:33088117 original size:10 final size:10
Alignment explanation
Indices: 33088102--33088131 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
33088092 CCCAAAAATA
33088102 TTTTTTTTAT
1 TTTTTTTTAT
33088112 TTTTTTTTAT
1 TTTTTTTTAT
*
33088122 ATTTTTTTAT
1 TTTTTTTTAT
33088132 CTGATTCTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:33091578 original size:32 final size:31
Alignment explanation
Indices: 33091516--33091609 Score: 161
Period size: 31 Copynumber: 3.0 Consensus size: 31
33091506 AGGCAAATTA
*
33091516 CAAGAGTAATTGAATACTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
33091547 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
1 CAAGAGTAATTGAATCCTAAT-AAAACTCTTT
*
33091579 GAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
33091610 AAAATTATCT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 30 0.50
32 30 0.50
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:33097204 original size:11 final size:11
Alignment explanation
Indices: 33097188--33097245 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
33097178 GTAGGTAACT
33097188 TTTTTTTGCGC
1 TTTTTTTGCGC
33097199 TTTTTTTGCGC
1 TTTTTTTGCGC
* **
33097210 --TTTTTACTT
1 TTTTTTTGCGC
**
33097219 TTTTTTTGCTA
1 TTTTTTTGCGC
33097230 TTTTTTTGCGC
1 TTTTTTTGCGC
33097241 TTTTT
1 TTTTT
33097246 GCTTTTTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
9 6 0.16
11 32 0.84
ACGTcount: A:0.03, C:0.14, G:0.12, T:0.71
Consensus pattern (11 bp):
TTTTTTTGCGC
Found at i:33097264 original size:19 final size:20
Alignment explanation
Indices: 33097221--33097257 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
33097211 TTTTACTTTT
33097221 TTTTTGCTATTTTTTTGCGC
1 TTTTTGCTATTTTTTTGCGC
33097241 TTTTTGCT-TTTTTTTGC
1 TTTTTGCTATTTTTTTGC
33097258 TGTTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.03, C:0.14, G:0.14, T:0.70
Consensus pattern (20 bp):
TTTTTGCTATTTTTTTGCGC
Found at i:33097265 original size:31 final size:31
Alignment explanation
Indices: 33097185--33097266 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
33097175 AAGGTAGGTA
*
33097185 ACTTTTTTTTGC-GCTTTTTTTGCGCTTTTT
1 ACTTTTTTTTGCTGATTTTTTTGCGCTTTTT
33097215 ACTTTTTTTTTGCT-ATTTTTTTGCGCTTTTT
1 AC-TTTTTTTTGCTGATTTTTTTGCGCTTTTT
*
33097246 GCTTTTTTTTGCTG-TTTTTTT
1 ACTTTTTTTTGCTGATTTTTTT
33097267 AAAGAATAAG
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 20 0.43
31 27 0.57
ACGTcount: A:0.04, C:0.13, G:0.12, T:0.71
Consensus pattern (31 bp):
ACTTTTTTTTGCTGATTTTTTTGCGCTTTTT
Found at i:33097863 original size:32 final size:31
Alignment explanation
Indices: 33097801--33097894 Score: 152
Period size: 32 Copynumber: 3.0 Consensus size: 31
33097791 AGGCAAATTA
**
33097801 CAAGAGTAATTGAATAATAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
33097832 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
1 CAAGAGTAATTGAATCCTAAT-AAAACTCTTT
*
33097864 AAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
33097895 AAAATTATCT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
31 29 0.49
32 30 0.51
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:33097895 original size:31 final size:31
Alignment explanation
Indices: 33097802--33097897 Score: 156
Period size: 31 Copynumber: 3.1 Consensus size: 31
33097792 GGCAAATTAC
** *
33097802 AAGAGTAATTGAATAATAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
33097833 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
33097865 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
33097896 AA
1 AA
33097898 ATTATCTAAG
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
31 31 0.51
32 30 0.49
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:33099468 original size:126 final size:126
Alignment explanation
Indices: 33099265--33099544 Score: 479
Period size: 126 Copynumber: 2.2 Consensus size: 126
33099255 TTACTGTAGT
33099265 AAAAACGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCTGCTTAAAGCGT
1 AAAAACGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCTGCTTAAAGCGT
* * *
33099330 TTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAAGAGCTACTGTAAC
66 TTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTCTCAAGAGCCACTGTAAA
* * * * *
33099391 CAAAGCGCGTCCACGTGGAAGCTTTTTTTAGTACTTCTGCTGACAAAGCATCCTGCTTAAAGCGT
1 AAAAACGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCTGCTTAAAGCGT
*
33099456 TTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTCTCAATAGCCACTGTAAA
66 TTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTCTCAAGAGCCACTGTAAA
33099517 AAAAACGCGTCCACGTGGGAGCTTCTTT
1 AAAAACGCGTCCACGTGGGAGCTTCTTT
33099545 AAATTAACAA
Statistics
Matches: 141, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 141 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (126 bp):
AAAAACGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCTGCTTAAAGCGT
TTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTCTCAAGAGCCACTGTAAA
Found at i:33099695 original size:97 final size:93
Alignment explanation
Indices: 33099577--33099857 Score: 280
Period size: 96 Copynumber: 2.9 Consensus size: 93
33099567 AGTAACCGTA
* *
33099577 AACCCCAAACCCTAATTTATTTGAGTTTTTACTTAAAAACCCTAAACACAAAACCCTAAACTAAT
1 AACCCTAAACCCTAATTTATTTGA-TTTTT-CTTAAAAACCCTAAACACAAAA-CCTAATCTAAT
33099642 TTATTATAAA-TTTATAATTAATTTACTCAAGT
63 TT-TTA-AAATTTTATAATTAATTTACTCAAGT
* * * * * * *
33099674 AACCCTGAACCTTAATTTATTTAATTTTTCTTTAAAAACCCTTAACTCTAAATCCTAATCTGATT
1 AACCCTAAACCCTAATTTATTTGATTTTTC-TTAAAAACCCTAAACAC-AAAACCTAATCTAATT
*
33099739 TTTAAAATTTTTTTAATTAAATTT-CTCAAGT
64 TTTAAAA-TTTTATAATT-AATTTACTCAAGT
** * ***
33099770 AATTCTAAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAAA-CTAATCTAAT
1 AACCCTAAACCCTAATTTATTTGA-TTTTTCTT-AAAAACCCTAAACAC-AAAACCTAATCTAAT
*
33099834 TTTAAAAATTTTATAATTAATTTA
63 TTTTAAAATTTTATAATTAATTTA
33099858 ATTGACAAAC
Statistics
Matches: 150, Mismatches: 26, Indels: 18
0.77 0.13 0.09
Matches are distributed among these distances:
94 8 0.05
95 13 0.09
96 82 0.55
97 47 0.31
ACGTcount: A:0.41, C:0.16, G:0.03, T:0.41
Consensus pattern (93 bp):
AACCCTAAACCCTAATTTATTTGATTTTTCTTAAAAACCCTAAACACAAAACCTAATCTAATTTT
TAAAATTTTATAATTAATTTACTCAAGT
Found at i:33108017 original size:8 final size:8
Alignment explanation
Indices: 33108006--33108036 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
33107996 ATATCTATAT
33108006 ATGTGTAA
1 ATGTGTAA
33108014 ATGTGTAA
1 ATGTGTAA
33108022 ATGTGTAA
1 ATGTGTAA
33108030 ATGTGTA
1 ATGTGTA
33108037 TGTGTATGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.39
Consensus pattern (8 bp):
ATGTGTAA
Found at i:33112004 original size:36 final size:36
Alignment explanation
Indices: 33111952--33112039 Score: 140
Period size: 36 Copynumber: 2.4 Consensus size: 36
33111942 ACCGTTTACG
33111952 GTACTATTCACGTATATAGCACTATTCACGTATACA
1 GTACTATTCACGTATATAGCACTATTCACGTATACA
* * *
33111988 GTACTATTCACATATATGGCACTATTCACGTATACG
1 GTACTATTCACGTATATAGCACTATTCACGTATACA
*
33112024 GTACTGTTCACGTATA
1 GTACTATTCACGTATA
33112040 CAGTAGTTGG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.34
Consensus pattern (36 bp):
GTACTATTCACGTATATAGCACTATTCACGTATACA
Found at i:33112033 original size:18 final size:18
Alignment explanation
Indices: 33111948--33112040 Score: 114
Period size: 18 Copynumber: 5.2 Consensus size: 18
33111938 TACGACCGTT
33111948 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
** *
33111966 TATAGCACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
33111984 TACAGTACTATTCACATA
1 TACGGTACTATTCACGTA
* *
33112002 TATGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
33112020 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
33112038 TAC
1 TAC
33112041 AGTAGTTGGG
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:33132199 original size:43 final size:42
Alignment explanation
Indices: 33132151--33132247 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 42
33132141 TTATGTGGAA
**
33132151 AAACGCCGCTATAAG-ACATGACCTTTAGCGGTGCTTTCCCCAC
1 AAACGCCGCTA-AAGAACATGACCTTTAGCGGCAC-TTCCCCAC
*
33132194 AAACGCCGCTAAAGAACATGACCTTTAGTGGCACTTCCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTCCCCAC
*
33132236 AAACGCCACTAA
1 AAACGCCGCTAA
33132248 CTTTAACAGA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 22 0.45
43 27 0.55
ACGTcount: A:0.31, C:0.33, G:0.16, T:0.20
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTCCCCAC
Found at i:33135050 original size:23 final size:24
Alignment explanation
Indices: 33135022--33135067 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
33135012 ATAATAATGA
* *
33135022 AAACGTGAATAAA-TAATCAAAAT
1 AAACGTGAACAAAGTAATAAAAAT
33135045 AAACGTGAACAAAGTAATAAAAA
1 AAACGTGAACAAAGTAATAAAAA
33135068 ATATAAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.63, C:0.09, G:0.11, T:0.17
Consensus pattern (24 bp):
AAACGTGAACAAAGTAATAAAAAT
Found at i:33135067 original size:24 final size:23
Alignment explanation
Indices: 33135008--33135067 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
33134998 AAATAATAAT
* *
33135008 AATAATAATAATGAAAACGTGAATA
1 AATAATAAAAAT--AAACGTGAACA
*
33135033 AATAATCAAAATAAACGTGAACA
1 AATAATAAAAATAAACGTGAACA
33135056 AAGTAATAAAAA
1 AA-TAATAAAAA
33135068 ATATAAAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 12 0.40
24 8 0.27
25 10 0.33
ACGTcount: A:0.63, C:0.07, G:0.10, T:0.20
Consensus pattern (23 bp):
AATAATAAAAATAAACGTGAACA
Found at i:33137454 original size:87 final size:87
Alignment explanation
Indices: 33137346--33137685 Score: 491
Period size: 87 Copynumber: 3.9 Consensus size: 87
33137336 TAGTGCTTAG
* * *
33137346 GAAGACAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCAATGGAGGCAAGACTTTGTTTTCG
1 GAAGGCAAGATCCGCTATCTTTAACCAGCTCCACTGCAACCAATGGAGGCAAGACTTCGTTTTCG
** *
33137411 ATCGGCTTCGCTGTTAATGCAA
66 ATCTACTTCGCTGTTAACGCAA
* ** * * * *
33137433 GAAGGGAAGATTTGCTATCTTTAATCAGCTCCACTGCAACTAATGAAGGCAAGGCTTCGTTTTCG
1 GAAGGCAAGATCCGCTATCTTTAACCAGCTCCACTGCAACCAATGGAGGCAAGACTTCGTTTTCG
*
33137498 ATCTATTTCGCTGTTAACGCAA
66 ATCTACTTCGCTGTTAACGCAA
* *
33137520 GAAGGCAAGATCCGCTATCTTTAACCAGCTCCACTGCAACCAATGGAGGCAACACTTTGTTTTCG
1 GAAGGCAAGATCCGCTATCTTTAACCAGCTCCACTGCAACCAATGGAGGCAAGACTTCGTTTTCG
33137585 ATCTACTTCGCTGTTAACGCAA
66 ATCTACTTCGCTGTTAACGCAA
* * * *
33137607 GAAGGCAAGATCCGCCATCTTTAACCAGCTCCACTACAACCAATGGAAGCAAGGCTTCGTTTTCG
1 GAAGGCAAGATCCGCTATCTTTAACCAGCTCCACTGCAACCAATGGAGGCAAGACTTCGTTTTCG
*
33137672 ATCTGCTTCGCTGT
66 ATCTACTTCGCTGT
33137686 CAATACAGAA
Statistics
Matches: 224, Mismatches: 29, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 224 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (87 bp):
GAAGGCAAGATCCGCTATCTTTAACCAGCTCCACTGCAACCAATGGAGGCAAGACTTCGTTTTCG
ATCTACTTCGCTGTTAACGCAA
Found at i:33137792 original size:88 final size:88
Alignment explanation
Indices: 33137668--33139813 Score: 3350
Period size: 88 Copynumber: 24.4 Consensus size: 88
33137658 AGGCTTCGTT
* * *
33137668 TTCGATCTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
* *
33137733 CCGAGAGATGCATGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* *
33137756 TTCGACCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTTTTGTCTTCAACTAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
**
33137821 CCGAGAGAGATAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* *
33137844 TTCGACCTCCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
33137909 CCGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
** * *
33137932 TTCGACCTGCTTCATTGTCAATGCAGGAAGGCAGGATCTTTTGCCTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
*
33137997 CCGAGAGAGACAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * * *
33138020 TTCGACTTACTTCGCTATCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCAATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
33138085 CCGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * * * *
33138108 TTCGACCTACTTCGCTATCAATGTAGGAAGGCAAGATCTGTTGTCTTCAATCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
33138173 CCGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * *
33138196 TTCGACCTACTTTGCTATCAATGCAGGAAGGCAAGATC--TTGTCTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
33138259 CCGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* *
33138282 TTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTATCTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
33138347 CCGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * *
33138370 TTCGACCTGCTTCACTGTCAATGTAGGAAGGCAGGATCTTTTGTCTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
33138435 CCGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * * *
33138458 TTCGACTTACTTCGTTATCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
33138523 CCGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * * * *
33138546 TTCGACCTACTTCGCTATCAATGTAGGAAGGCAAGATCTGTTGTCTTCAATCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
33138611 CCGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * * *
33138634 TTCGACCTACTTTGCTATCAATGCAGGAAGGCAAGATC--TTGTCTTCAACCAGCTCCACCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
*
33138697 CCGAGGGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * *
33138720 TTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTCCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
33138785 CCGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * *
33138808 TTCGACCTGCTTCGATGTCAATGCAGGAAAGCAAGATCTTTTGTCTTCAACCAGCTTCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
*
33138873 CCGAGAGAGGCAAAGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * * ** * *
33138896 TTTGACCTGCTTCGCTGTCAATACAAGAAGATAAGATCCTTTGTCTCCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
*
33138961 CCGAAAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
** * *
33138984 TTCGACCTGCTTCGCTGTCAACACAGAAAGGTAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
*
33139049 TCGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
*
33139072 TTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
*
33139137 CCGAGAGAGTCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * * * * *
33139160 TTCGACCTACTTCACTGTCAATACAGAAAGACAAGATCTTTTGTCTTCAACCAGCTCCATCATAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
33139225 CCGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
*
33139248 TTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
* *
33139313 CTGAGAGAGGTAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * *
33139336 TTCAACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATTACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
*
33139401 CCGAGAGAGGCAAGGTTTGTATC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * *
33139424 TTCGACCTGCTTCGCTGTCAA-GAAAGAAATGCAAGATCTTTTGTCTTCAACCAGCTCCATCACA
1 TTCGACCTGCTTCGCTGTCAATG-CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACA
33139488 ACCGAGAGAGGCAAGGTTTGTGTC
65 ACCGAGAGAGGCAAGGTTTGTGTC
** *
33139512 TTCGACCTGCTTCGCTGTCAACACAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
33139577 CCGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* *
33139600 TTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTATCTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
**
33139665 TTGAGAGAGGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* * *
33139688 TTCGACTTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTTTTCAACCAGCTCCATCACAA
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
* *
33139753 TCGAGAGATGCAAGGTTTGTGTC
66 CCGAGAGAGGCAAGGTTTGTGTC
* *
33139776 TTCGACTTGCTTCGCTGTCAATACAGG-AGGCAAGATCT
1 TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
33139814 GCAACTTTAT
Statistics
Matches: 1903, Mismatches: 149, Indels: 13
0.92 0.07 0.01
Matches are distributed among these distances:
86 159 0.08
87 11 0.01
88 1733 0.91
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (88 bp):
TTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAA
CCGAGAGAGGCAAGGTTTGTGTC
Found at i:33140937 original size:21 final size:21
Alignment explanation
Indices: 33140911--33140957 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
33140901 GGTATAGCAA
33140911 GATCACCACATGCCCCAATCT
1 GATCACCACATGCCCCAATCT
** *
33140932 GATCACTTCATGCCCCATTCT
1 GATCACCACATGCCCCAATCT
33140953 GATCA
1 GATCA
33140958 ATATTTAAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.38, G:0.11, T:0.26
Consensus pattern (21 bp):
GATCACCACATGCCCCAATCT
Found at i:33142246 original size:25 final size:26
Alignment explanation
Indices: 33142218--33142277 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 26
33142208 TTTCTTTTTC
33142218 TTTTTATTTT-TATTTTTGACTTTGA
1 TTTTTATTTTATATTTTTGACTTTGA
* *
33142243 TTTTT-TTTTATTTTTTTGATTTTGA
1 TTTTTATTTTATATTTTTGACTTTGA
*
33142268 TTTTGATTTT
1 TTTTTATTTT
33142278 GTTTTGTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.13
25 22 0.73
26 4 0.13
ACGTcount: A:0.13, C:0.02, G:0.08, T:0.77
Consensus pattern (26 bp):
TTTTTATTTTATATTTTTGACTTTGA
Found at i:33142259 original size:31 final size:31
Alignment explanation
Indices: 33142219--33142316 Score: 91
Period size: 29 Copynumber: 3.4 Consensus size: 31
33142209 TTCTTTTTCT
* *
33142219 TTTTATTTTTAT--TTTTGACTTTGATTTTT
1 TTTTATTTTTTTGATTTTGACTTTGATTTTG
*
33142248 TTTTATTTTTTTGATTTTGATTTTGATTTTG
1 TTTTATTTTTTTGATTTTGACTTTGATTTTG
* * **
33142279 -TTT-TGTTTTTGTTTTTGTTTTTG-TTTTG
1 TTTTATTTTTTTGATTTTGACTTTGATTTTG
33142307 TTTT-TTTTTT
1 TTTTATTTTTT
33142317 GAGTCTGAAC
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
28 5 0.08
29 36 0.61
30 3 0.05
31 15 0.25
ACGTcount: A:0.08, C:0.01, G:0.11, T:0.80
Consensus pattern (31 bp):
TTTTATTTTTTTGATTTTGACTTTGATTTTG
Found at i:33142259 original size:37 final size:37
Alignment explanation
Indices: 33142218--33142294 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
33142208 TTTCTTTTTC
*
33142218 TTTTT-ATTTTTATTTTTGACTTTGATTTT-TTTTTATT
1 TTTTTGATTTTGA-TTTTGACTTTG-TTTTGTTTTTATT
* *
33142255 TTTTTGATTTTGATTTTGATTTTGTTTTGTTTTTGTT
1 TTTTTGATTTTGATTTTGACTTTGTTTTGTTTTTATT
33142292 TTT
1 TTT
33142295 GTTTTTGTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 4 0.11
37 25 0.71
38 6 0.17
ACGTcount: A:0.10, C:0.01, G:0.10, T:0.78
Consensus pattern (37 bp):
TTTTTGATTTTGATTTTGACTTTGTTTTGTTTTTATT
Found at i:33142282 original size:23 final size:23
Alignment explanation
Indices: 33142256--33142311 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
33142246 TTTTTTATTT
*
33142256 TTTTGATTTTGATTTTGATTTTG
1 TTTTGTTTTTGATTTTGATTTTG
* *
33142279 TTTTGTTTTTGTTTTTGTTTTTG
1 TTTTGTTTTTGATTTTGATTTTG
33142302 TTTTGTTTTT
1 TTTTGTTTTT
33142312 TTTTTGAGTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.05, C:0.00, G:0.16, T:0.79
Consensus pattern (23 bp):
TTTTGTTTTTGATTTTGATTTTG
Found at i:33142316 original size:6 final size:6
Alignment explanation
Indices: 33142206--33142317 Score: 88
Period size: 6 Copynumber: 19.0 Consensus size: 6
33142196 TAACCTCTCC
* * * * ** *
33142206 TTTTTC TTTTTC TTTTTA TTTTTA TTTTTG ACTTTG ATTTTT- TTTTATT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG -TTTTTG TTTT-TG
* * *
33142255 TTTTTG ATTTTG ATTTTG ATTTTG -TTTTG TTTTTG TTTTTG TTTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG
33142302 -TTTTG TTTTT- TTTTTG
1 TTTTTG TTTTTG TTTTTG
33142318 AGTCTGAACT
Statistics
Matches: 92, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
5 19 0.21
6 66 0.72
7 7 0.08
ACGTcount: A:0.07, C:0.03, G:0.11, T:0.79
Consensus pattern (6 bp):
TTTTTG
Found at i:33144309 original size:19 final size:17
Alignment explanation
Indices: 33144287--33144330 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
33144277 AGTGAAATTT
33144287 AATGCATGCAATGAAATG
1 AATGCATGC-ATGAAATG
33144305 CAATGCAGATGCATGAAATG
1 -AATGC--ATGCATGAAATG
33144325 AATGCA
1 AATGCA
33144331 AAAAGAGACG
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 1 0.04
19 10 0.43
20 8 0.35
21 4 0.17
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.20
Consensus pattern (17 bp):
AATGCATGCATGAAATG
Found at i:33146351 original size:23 final size:24
Alignment explanation
Indices: 33146323--33146367 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
33146313 TAATAATGAA
* *
33146323 AACGTGAATAAA-TAATCAAAATT
1 AACGTGAACAAAGTAATAAAAATT
33146346 AACGTGAACAAAGTAATAAAAA
1 AACGTGAACAAAGTAATAAAAA
33146368 ATATAAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20
Consensus pattern (24 bp):
AACGTGAACAAAGTAATAAAAATT
Found at i:33151246 original size:43 final size:42
Alignment explanation
Indices: 33151199--33151325 Score: 194
Period size: 43 Copynumber: 3.1 Consensus size: 42
33151189 ATCTAAAGTT
33151199 TTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAG
1 TTATGTAAGTTATGATATG-TATATATTTATGTATTATGTAAG
33151242 TTATGTAAGTTATGATATG-ATATA--TA--T-TTATGTAAG
1 TTATGTAAGTTATGATATGTATATATTTATGTATTATGTAAG
33151278 TTATGTAAGTTATGATATGGTATATATTTATGTATTATGTAAG
1 TTATGTAAGTTATGATAT-GTATATATTTATGTATTATGTAAG
33151321 TTATG
1 TTATG
33151326 ATCCAAAGTT
Statistics
Matches: 77, Mismatches: 0, Indels: 14
0.85 0.00 0.15
Matches are distributed among these distances:
36 27 0.35
37 2 0.03
38 5 0.06
39 2 0.03
40 2 0.03
41 5 0.06
42 1 0.01
43 33 0.43
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (42 bp):
TTATGTAAGTTATGATATGTATATATTTATGTATTATGTAAG
Found at i:33151280 original size:36 final size:36
Alignment explanation
Indices: 33151199--33151327 Score: 172
Period size: 36 Copynumber: 3.4 Consensus size: 36
33151189 ATCTAAAGTT
33151199 TTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAG
1 TTATGTAAGTTATGATATG--ATATA--TA--T-TTATGTAAG
33151242 TTATGTAAGTTATGATATGATATATATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
*
33151278 TTATGTAAGTTATGATATGGTATATATTTATGT-A-
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
33151312 TTATGTAAGTTATGAT
1 TTATGTAAGTTATGAT
33151328 CCAAAGTTTT
Statistics
Matches: 85, Mismatches: 1, Indels: 9
0.89 0.01 0.09
Matches are distributed among these distances:
34 16 0.19
35 1 0.01
36 41 0.48
37 1 0.01
39 2 0.02
41 5 0.06
43 19 0.22
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (36 bp):
TTATGTAAGTTATGATATGATATATATTTATGTAAG
Found at i:33151397 original size:13 final size:13
Alignment explanation
Indices: 33151379--33151405 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
33151369 TGATTATCAT
33151379 CTTTAAATTTTAA
1 CTTTAAATTTTAA
33151392 CTTTAAATTTTAA
1 CTTTAAATTTTAA
33151405 C
1 C
33151406 CCTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:33154023 original size:41 final size:41
Alignment explanation
Indices: 33153936--33154049 Score: 158
Period size: 41 Copynumber: 2.8 Consensus size: 41
33153926 TTCTTGTAGT
*
33153936 GCCGCTAATGCTTGACCTTTTGCGGTG-TTTTCTCATAAAA
1 GCCGCTAATGCTTGACTTTTTGCGGTGTTTTTCTCATAAAA
* * *
33153976 GACGCTAATGCTTGACTTTTTGCGGAGTTTTTCTCATAAAC
1 GCCGCTAATGCTTGACTTTTTGCGGTGTTTTTCTCATAAAA
* * *
33154017 GCCGCTATTGCTTTACTTATTGCGGTGTTTTTC
1 GCCGCTAATGCTTGACTTTTTGCGGTGTTTTTC
33154050 CGTTAGCGCC
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
40 24 0.38
41 40 0.62
ACGTcount: A:0.18, C:0.21, G:0.20, T:0.41
Consensus pattern (41 bp):
GCCGCTAATGCTTGACTTTTTGCGGTGTTTTTCTCATAAAA
Found at i:33155776 original size:16 final size:17
Alignment explanation
Indices: 33155745--33155777 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33155735 CCGACAATAC
*
33155745 AAAAAAAATTAGTTTTT
1 AAAAAAAATTACTTTTT
33155762 AAAAAAAA-TACTTTTT
1 AAAAAAAATTACTTTTT
33155778 CCTTTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (17 bp):
AAAAAAAATTACTTTTT
Found at i:33156939 original size:21 final size:24
Alignment explanation
Indices: 33156891--33156941 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 24
33156881 ATTGAATTGT
* *
33156891 AGGATCGATAGTTAAGTCATTGAT
1 AGGATCGATAATTAAGTCATTGAA
33156915 AGGATCGA-AATT-AGT-ATTGAA
1 AGGATCGATAATTAAGTCATTGAA
33156936 AGGATC
1 AGGATC
33156942 ACTTGTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 11 0.44
22 3 0.12
23 3 0.12
24 8 0.32
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.29
Consensus pattern (24 bp):
AGGATCGATAATTAAGTCATTGAA
Found at i:33159431 original size:14 final size:14
Alignment explanation
Indices: 33159409--33159452 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
33159399 GAAATAATAA
*
33159409 TTTAATTAATATAT
1 TTTAATTAATAAAT
*
33159423 TTTATTTAATAAAT
1 TTTAATTAATAAAT
*
33159437 TATAATTAATAGAAT
1 TTTAATTAATA-AAT
33159452 T
1 T
33159453 ACTTATATGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 21 0.84
15 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (14 bp):
TTTAATTAATAAAT
Found at i:33159879 original size:52 final size:52
Alignment explanation
Indices: 33159817--33159920 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
33159807 AAAATTTCAT
*
33159817 CCATTACTAATGTTAAAAATTATGATGCGTAATTATCTGATTATTCTGTTAG
1 CCATTACTAATGTTAAAAATTATGATGCGTAATTATCCGATTATTCTGTTAG
*
33159869 CCATTACTAATGTTAAGAATTATGATGCGTAATTATCCGATTATTCTGTTAG
1 CCATTACTAATGTTAAAAATTATGATGCGTAATTATCCGATTATTCTGTTAG
33159921 GCATGCTAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.41
Consensus pattern (52 bp):
CCATTACTAATGTTAAAAATTATGATGCGTAATTATCCGATTATTCTGTTAG
Found at i:33162483 original size:3 final size:3
Alignment explanation
Indices: 33162475--33162499 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
33162465 TGGTCATATT
33162475 GTG GTG GTG GTG GTG GTG GTG GTG G
1 GTG GTG GTG GTG GTG GTG GTG GTG G
33162500 GAGGAGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32
Consensus pattern (3 bp):
GTG
Found at i:33167790 original size:59 final size:59
Alignment explanation
Indices: 33167727--33167840 Score: 158
Period size: 59 Copynumber: 1.9 Consensus size: 59
33167717 CAAAATTAGA
* * * **
33167727 TAAAAAAA-AGTTTAGGTATTAACTTAGTAAAAAATGTCAAATTCAGATACCAAATTGTG
1 TAAAAAAATAGTTTAGATATCAAATTAG-AAAAAAAATCAAATTCAGATACCAAATTGTG
*
33167786 TAAAAAAATAGTTTAGATATCAAATTAGAAAAAAAATCAAATTTAGATACCAAAT
1 TAAAAAAATAGTTTAGATATCAAATTAGAAAAAAAATCAAATTCAGATACCAAAT
33167841 GTTATGTTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
59 32 0.67
60 16 0.33
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.29
Consensus pattern (59 bp):
TAAAAAAATAGTTTAGATATCAAATTAGAAAAAAAATCAAATTCAGATACCAAATTGTG
Found at i:33168342 original size:15 final size:16
Alignment explanation
Indices: 33168322--33168351 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
33168312 TATTTTCAAA
33168322 AAATATA-ATAAATTT
1 AAATATATATAAATTT
33168337 AAATATATATAAATT
1 AAATATATATAAATT
33168352 ACATTGTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATATATATAAATTT
Found at i:33172456 original size:3 final size:3
Alignment explanation
Indices: 33172448--33172477 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
33172438 AATTATTCCC
*
33172448 ACT ACT ACT ACT TCT ACT ACT ACT ACT ACT
1 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT
33172478 TCTTCTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (3 bp):
ACT
Found at i:33186201 original size:24 final size:24
Alignment explanation
Indices: 33186174--33186225 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
33186164 TTAGTAAGTC
*
33186174 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
33186198 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
33186222 AAAT
1 AAAT
33186226 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:33188166 original size:24 final size:24
Alignment explanation
Indices: 33188139--33188190 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
33188129 TTAGTAAGTC
*
33188139 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
33188163 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
33188187 AAAT
1 AAAT
33188191 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:33188911 original size:19 final size:19
Alignment explanation
Indices: 33188887--33188926 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
33188877 ACAAATACAT
*
33188887 TACCAACTTAATTCAGATG
1 TACCAACTTAATTCAAATG
*
33188906 TACCAACTTAGTTCAAATG
1 TACCAACTTAATTCAAATG
33188925 TA
1 TA
33188927 ACTAAGTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (19 bp):
TACCAACTTAATTCAAATG
Found at i:33189889 original size:101 final size:98
Alignment explanation
Indices: 33189701--33189899 Score: 317
Period size: 101 Copynumber: 2.0 Consensus size: 98
33189691 ACTAGGCTCC
*
33189701 TATAGGTTGATTCATTAACCTTCTCAAAAACACCTTGGCTATGCTTTTCTCCAAAACCAACTGGA
1 TATAGGTTGATTCATTAACCTTCTCAAAAACACCTTGGCTATGCGTTTCTCCAAAACCAACTGGA
*
33189766 GTACCAGTTGCTTTGCAATTTTGCATGGGGAAT
66 GTACCAATTGCTTTGCAATTTTGCATGGGGAAT
*
33189799 TATAGGTTGATTCATTAACCTTCTCAAAAACACTTTGGCTTGATAGCGTTTCTCCAAAACCAACT
1 TATAGGTTGATTCATTAACCTTCTCAAAAACACCTTGGC-T-AT-GCGTTTCTCCAAAACCAACT
* * *
33189864 GGAGTACTAATTGCTTTGTAATTTTGCATTGGGAAT
63 GGAGTACCAATTGCTTTGCAATTTTGCATGGGGAAT
33189900 CTGTTTAGGA
Statistics
Matches: 92, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
98 38 0.41
99 1 0.01
100 2 0.02
101 51 0.55
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (98 bp):
TATAGGTTGATTCATTAACCTTCTCAAAAACACCTTGGCTATGCGTTTCTCCAAAACCAACTGGA
GTACCAATTGCTTTGCAATTTTGCATGGGGAAT
Found at i:33194887 original size:5 final size:5
Alignment explanation
Indices: 33194877--33194902 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
33194867 TGAGCATTCG
33194877 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
33194903 AATATTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:33196037 original size:9 final size:9
Alignment explanation
Indices: 33196020--33196050 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
33196010 TCGAGTTGAT
33196020 TCGAATAAC
1 TCGAATAAC
*
33196029 TCGATTAAC
1 TCGAATAAC
33196038 TCGAATAAC
1 TCGAATAAC
33196047 TCGA
1 TCGA
33196051 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:33200765 original size:30 final size:29
Alignment explanation
Indices: 33200729--33200817 Score: 78
Period size: 30 Copynumber: 3.1 Consensus size: 29
33200719 GCCCGGCCCG
33200729 AAAATATATTAAATATATATTTTTATGTTT
1 AAAATATA-TAAATATATATTTTTATGTTT
* *
33200759 AAAATATA-ATAGTTTA-AGTTTTTTATGTTT
1 AAAATATATA-AATATATA--TTTTTATGTTT
* *
33200789 AAAA-A-ATATATATTTATTTTTATGTTT
1 AAAATATATAAATATATATTTTTATGTTT
33200816 AA
1 AA
33200818 GTTTTTAGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
27 13 0.27
28 5 0.10
29 7 0.15
30 23 0.48
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (29 bp):
AAAATATATAAATATATATTTTTATGTTT
Found at i:33203013 original size:16 final size:16
Alignment explanation
Indices: 33202992--33203033 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
33202982 AATAATTTGA
*
33202992 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
33203008 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
33203024 TAGTTTTAAT
1 TAATTTTAAT
33203034 TTTATTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:33203977 original size:35 final size:37
Alignment explanation
Indices: 33203938--33204006 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 37
33203928 TTCAAAAAAT
33203938 TATATTATAA-AAATTTTAAATAAATA-AGTTTTAAA
1 TATATTATAATAAATTTTAAATAAATACAGTTTTAAA
* * *
33203973 TATATTTTAATAAATTTTAATTAATTACAGTTTT
1 TATATTATAATAAATTTTAAATAAATACAGTTTT
33204007 CAAAATAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 9 0.31
36 14 0.48
37 6 0.21
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (37 bp):
TATATTATAATAAATTTTAAATAAATACAGTTTTAAA
Found at i:33206346 original size:143 final size:143
Alignment explanation
Indices: 33206088--33206376 Score: 481
Period size: 143 Copynumber: 2.0 Consensus size: 143
33206078 TAATTAAAGT
* * *
33206088 TCAGAGACTAAATTGTAAAAGTCTAATCGTTATTGATTTTTATATTGGAAAATGTTCGATGACCT
1 TCAGAGACTAAATTGTAAAAGTCCAATCGCTATTGAATTTTATATTGGAAAATGTTCGATGACCT
* *
33206153 AATCGGTAATTAACCAAGGGACCTAAATGGAAATTAACTCATTGTTTCTTATAAGATAGTGGATG
66 AATCGGTAATTAACCAAGGGACCTAAATAGAAATTAACTCATTGTTTCTTATAAGATAATGGATG
33206218 ATAATGATGATAG
131 ATAATGATGATAG
* *
33206231 TCAGAGATTAAATTGTAAAAGTCCAATCGCTATTGAATTTTATATTGGAAAATGTTTGATGACCT
1 TCAGAGACTAAATTGTAAAAGTCCAATCGCTATTGAATTTTATATTGGAAAATGTTCGATGACCT
**
33206296 AATTC-GTAATTAACCAAGGGACCTAAATAGTTATTAACTCATTGTTTCTTATAAGATAATGGAT
66 AA-TCGGTAATTAACCAAGGGACCTAAATAGAAATTAACTCATTGTTTCTTATAAGATAATGGAT
33206360 GATAATGATGATAG
130 GATAATGATGATAG
33206374 TCA
1 TCA
33206377 TTTAACTTTG
Statistics
Matches: 136, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
143 134 0.99
144 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.35
Consensus pattern (143 bp):
TCAGAGACTAAATTGTAAAAGTCCAATCGCTATTGAATTTTATATTGGAAAATGTTCGATGACCT
AATCGGTAATTAACCAAGGGACCTAAATAGAAATTAACTCATTGTTTCTTATAAGATAATGGATG
ATAATGATGATAG
Found at i:33207443 original size:39 final size:39
Alignment explanation
Indices: 33207394--33207477 Score: 125
Period size: 39 Copynumber: 2.2 Consensus size: 39
33207384 GGTTTATGTC
* * *
33207394 GATGAGGTGCAGAGCGCAAATTTATACTTTGGACGT-TCT
1 GATGAGGTGCAAAGCACAAATTTATACTCTGGACGTCT-T
33207433 GATGAGGTGCAAAGCACAAATTTATACTCTGGACGTCTT
1 GATGAGGTGCAAAGCACAAATTTATACTCTGGACGTCTT
33207472 GATGAG
1 GATGAG
33207478 CCAATAGGTG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 40 0.98
40 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (39 bp):
GATGAGGTGCAAAGCACAAATTTATACTCTGGACGTCTT
Found at i:33233109 original size:20 final size:19
Alignment explanation
Indices: 33233076--33233117 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
33233066 ATAAAAACAT
33233076 AAATATACATAAATATTTTAA
1 AAATATACAT-AA-ATTTTAA
33233097 AAATATA-ATAAATTTTAA
1 AAATATACATAAATTTTAA
33233115 AAA
1 AAA
33233118 AACCATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 10 0.48
19 2 0.10
20 2 0.10
21 7 0.33
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (19 bp):
AAATATACATAAATTTTAA
Found at i:33233119 original size:20 final size:21
Alignment explanation
Indices: 33233076--33233118 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
33233066 ATAAAAACAT
*
33233076 AAATATACATAAATATTTTAA
1 AAATATACATAAATATTTAAA
33233097 AAATATA-ATAAAT-TTTAAA
1 AAATATACATAAATATTTAAA
33233116 AAA
1 AAA
33233119 ACCATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.38
20 6 0.29
21 7 0.33
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
AAATATACATAAATATTTAAA
Found at i:33236267 original size:21 final size:21
Alignment explanation
Indices: 33236241--33236281 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
33236231 ATCTGCTCAA
* *
33236241 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
33236262 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
33236282 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:33239282 original size:17 final size:17
Alignment explanation
Indices: 33239253--33239298 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
33239243 TTATTATAAT
*
33239253 TTTTAATATATTTGTGTA
1 TTTTAATA-ATTTGTATA
*
33239271 TTTTAATAATTTTTATA
1 TTTTAATAATTTGTATA
*
33239288 TTTTAAGAATT
1 TTTTAATAATT
33239299 AGGATCAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.61
Consensus pattern (17 bp):
TTTTAATAATTTGTATA
Found at i:33239788 original size:30 final size:30
Alignment explanation
Indices: 33239748--33239836 Score: 100
Period size: 30 Copynumber: 3.2 Consensus size: 30
33239738 TTAATATAAT
33239748 ATTTGATATTTGAATATGATATTTTTTTTA
1 ATTTGATATTTGAATATGATATTTTTTTTA
*
33239778 ATTTGGTATTT--A-A-G-T-TTTTTTTTA
1 ATTTGATATTTGAATATGATATTTTTTTTA
* * *
33239802 ATTTGATACTCGAATTTGATATTTTTTTTA
1 ATTTGATATTTGAATATGATATTTTTTTTA
33239832 ATTTG
1 ATTTG
33239837 GTACCTAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
24 17 0.35
25 1 0.02
26 2 0.04
27 1 0.02
28 2 0.04
29 1 0.02
30 24 0.50
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.61
Consensus pattern (30 bp):
ATTTGATATTTGAATATGATATTTTTTTTA
Found at i:33239846 original size:29 final size:29
Alignment explanation
Indices: 33239764--33239851 Score: 96
Period size: 30 Copynumber: 3.2 Consensus size: 29
33239754 TATTTGAATA
**
33239764 TGATATTTTTTTTAATTTGGTATTTAA--
1 TGATATTTTTTTTAATTTGGTACCTAATT
* *
33239791 -G-T-TTTTTTTTAATTTGATACTCGAATT
1 TGATATTTTTTTTAATTTGGTAC-CTAATT
33239818 TGATATTTTTTTTAATTTGGTACCTAATT
1 TGATATTTTTTTTAATTTGGTACCTAATT
33239847 TGATA
1 TGATA
33239852 CTTGAATTTG
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
24 16 0.33
25 3 0.06
26 1 0.02
28 1 0.02
29 11 0.22
30 17 0.35
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (29 bp):
TGATATTTTTTTTAATTTGGTACCTAATT
Found at i:33239883 original size:41 final size:42
Alignment explanation
Indices: 33239800--33239885 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
33239790 AGTTTTTTTT
* *
33239800 TAATTTGATACTCGAATTTGATATTTTTTTTAATTTGGTACC
1 TAATTTGATACTCGAATTTGATATTTTTTCTAATTTGATACC
*
33239842 TAATTTGATACTTGAATTTGAT-TTTTTTCTAATTTGATACC
1 TAATTTGATACTCGAATTTGATATTTTTTCTAATTTGATACC
33239883 TAA
1 TAA
33239886 ACTTTTTTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 20 0.49
42 21 0.51
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.52
Consensus pattern (42 bp):
TAATTTGATACTCGAATTTGATATTTTTTCTAATTTGATACC
Found at i:33240903 original size:18 final size:17
Alignment explanation
Indices: 33240873--33240917 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
33240863 AGGCACCAAC
**
33240873 AATAAAAATAATATTTT
1 AATAAAAATAATAAATT
33240890 AATAAAAATAAATAAATT
1 AATAAAAAT-AATAAATT
33240908 AATAATAAAT
1 AATAA-AAAT
33240918 TTTAAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 9 0.38
18 11 0.46
19 4 0.17
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AATAAAAATAATAAATT
Found at i:33241829 original size:24 final size:25
Alignment explanation
Indices: 33241781--33241839 Score: 102
Period size: 24 Copynumber: 2.4 Consensus size: 25
33241771 TTTATTATTG
*
33241781 TATTATTATTAAATATTATAAGTAT
1 TATTATTATTAAAGATTATAAGTAT
33241806 TATTATTATTAAAGA-TATAAGTAT
1 TATTATTATTAAAGATTATAAGTAT
33241830 TATTATTATT
1 TATTATTATT
33241840 CAACATATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 19 0.58
25 14 0.42
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (25 bp):
TATTATTATTAAAGATTATAAGTAT
Found at i:33241847 original size:24 final size:24
Alignment explanation
Indices: 33241781--33241847 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
33241771 TTTATTATTG
*
33241781 TATTATTATTAAATATTATAAGTAT
1 TATTATTATTAAACA-TATAAGTAT
*
33241806 TATTATTATTAAAGATATAAGTAT
1 TATTATTATTAAACATATAAGTAT
*
33241830 TATTATTATTCAACATAT
1 TATTATTATTAAACATAT
33241848 TTTTTTATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 25 0.64
25 14 0.36
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.49
Consensus pattern (24 bp):
TATTATTATTAAACATATAAGTAT
Found at i:33245840 original size:27 final size:28
Alignment explanation
Indices: 33245810--33245870 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
33245800 CTTGAACTTG
33245810 ACTTTTTTTT-CCTAATTTGATACATAA
1 ACTTTTTTTTACCTAATTTGATACATAA
* * *
33245837 ACTTTTTTTTATCTAATTTGGTACCTAA
1 ACTTTTTTTTACCTAATTTGATACATAA
33245865 ACTTTT
1 ACTTTT
33245871 CAAATGTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 10 0.33
28 20 0.67
ACGTcount: A:0.26, C:0.15, G:0.05, T:0.54
Consensus pattern (28 bp):
ACTTTTTTTTACCTAATTTGATACATAA
Done.