Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 119 of 230
Found at i:34610264 original size:44 final size:44
Alignment explanation
Indices: 34610198--34610281 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
34610188 CTGTAACCAC
* ** * *
34610198 AGGGAGGTAAAATCTGCCATCTTTAATCTGCTCCACTACTACTT
1 AGGGAGATAAAATCTGAAATCTTCAATCTACTCCACTACTACTT
* *
34610242 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTACT
1 AGGGAGATAAAATCTGAAATCTTCAATCTACTCCACTACT
34610282 GCCCAGGGAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
44 33 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (44 bp):
AGGGAGATAAAATCTGAAATCTTCAATCTACTCCACTACTACTT
Found at i:34610290 original size:44 final size:44
Alignment explanation
Indices: 34610197--34610290 Score: 98
Period size: 44 Copynumber: 2.1 Consensus size: 44
34610187 GCTGTAACCA
* ** * * *
34610197 CAGGGAGGTAAAATCTGCCATCTTTAATCTGCTCCACTACTACT
1 CAGGGAGATAAAATCTGAAATCTTCAATCTACTCCACTACTACC
* * * *
34610241 TAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTACTGCC
1 CAGGGAGATAAAATCTGAAATCTTCAATCTACTCCACTACTACC
34610285 CAGGGA
1 CAGGGA
34610291 AGTAGAATTA
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (44 bp):
CAGGGAGATAAAATCTGAAATCTTCAATCTACTCCACTACTACC
Found at i:34610342 original size:132 final size:130
Alignment explanation
Indices: 34610168--34610603 Score: 556
Period size: 132 Copynumber: 3.3 Consensus size: 130
34610158 AAATAGGATA
* * *
34610168 ACTGACTTCAATGTACTCCGCTGTAACCACAGGGAGGTAAAATCTGCCATCTTTAATCTGCTCCA
1 ACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATC-TTAATCTGCTCCA
* *
34610233 CTACTACTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTACTGCCCAGGGAAGTAGAA
65 CTACTACTTAGGGAGGTAAGATCT-AAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAA
34610298 TT
129 TT
* * * * * *
34610300 ACTGGCTTCAATGTACTCCACTGTAATCACAGGAAGGCAAAATCCACCATCTTCGATCTACTCCA
1 ACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTT-AATCTGCTCCA
* * *
34610365 CTACTAATTATGGAGGTAAGATCTAAAATCTTCAATCTATTCCACTGCTGCTCAGGGAAGTAGAA
65 CTACTACTTAGGGAGGTAAGATCT-AAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAA
34610430 TT
129 TT
* * *
34610432 ACTGGCTTCAATGTACTCCACTGTAACCTCAGGGCGGTAAAATCCGCCATC--AACCTGCTCCAC
1 ACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTAATCTGCTCCAC
* ** * * *
34610495 T-GTAGCCGAGAGAGGTAAGGTCTATAATCTTCAATCTATTCCACTGCTGCCTAGGG-AGATAGA
66 TACTA-CTTAGGGAGGTAAGATCTA-AATCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGA
34610558 ATT
128 ATT
* *
34610561 ACCGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAAT
1 ACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT
34610604 TTGTAATCAA
Statistics
Matches: 265, Mismatches: 35, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
128 5 0.02
129 99 0.37
131 2 0.01
132 159 0.60
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (130 bp):
ACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTAATCTGCTCCAC
TACTACTTAGGGAGGTAAGATCTAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATT
Found at i:34610771 original size:86 final size:88
Alignment explanation
Indices: 34610619--34610778 Score: 227
Period size: 86 Copynumber: 1.8 Consensus size: 88
34610609 ATCAACCTAC
* *
34610619 TCCACTGCAACCGCGGGAGGCAAGGTCTGGTATCTTCGATATGCCTCACTGTCAATGCAGGAAGG
1 TCCACTGCAACCGAGGGAGGCAAGGTCTGGTATCTTCGATATACCTCACTGTCAATGCAGGAAGG
34610684 CAAGATCTGGTAACTTAACGTCT
66 CAAGATCTGGTAACTTAACGTCT
* * * * *
34610707 TCCACTGCAACCGAGGGAGGCAAGG-CTTTGT-T-TTCGATCTACTTCGCTGTCGATGCAGGAAG
1 TCCACTGCAACCGAGGGAGGCAAGGTC-TGGTATCTTCGATATACCTCACTGTCAATGCAGGAAG
34610769 GCAAGATCTG
65 GCAAGATCTG
34610779 CTATCTTCAC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
86 35 0.55
87 2 0.03
88 27 0.42
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (88 bp):
TCCACTGCAACCGAGGGAGGCAAGGTCTGGTATCTTCGATATACCTCACTGTCAATGCAGGAAGG
CAAGATCTGGTAACTTAACGTCT
Found at i:34618283 original size:3 final size:3
Alignment explanation
Indices: 34618275--34618299 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
34618265 AGTAAAAAAC
34618275 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
34618300 GGAAATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:34620313 original size:52 final size:52
Alignment explanation
Indices: 34620257--34620373 Score: 207
Period size: 52 Copynumber: 2.2 Consensus size: 52
34620247 AACAAGGGAC
*
34620257 ACACGATCGTGTCCAAGCCCGTGTCCTCACGTGTAACTCACTGAGTAAGGTT
1 ACACGGTCGTGTCCAAGCCCGTGTCCTCACGTGTAACTCACTGAGTAAGGTT
* *
34620309 ACACGGTCGTGTCCAAGCCTGTGTCCTCACGTGTAATTCACTGAGTAAGGTT
1 ACACGGTCGTGTCCAAGCCCGTGTCCTCACGTGTAACTCACTGAGTAAGGTT
34620361 ACACGGTCGTGTC
1 ACACGGTCGTGTC
34620374 ACACGACTGT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.26
Consensus pattern (52 bp):
ACACGGTCGTGTCCAAGCCCGTGTCCTCACGTGTAACTCACTGAGTAAGGTT
Found at i:34620392 original size:52 final size:52
Alignment explanation
Indices: 34620257--34620392 Score: 184
Period size: 52 Copynumber: 2.6 Consensus size: 52
34620247 AACAAGGGAC
* * * *
34620257 ACACGATCGTGTCCAAGCCCGTGTCCTCACGTGTAACTCACTGAGTAAGGTT
1 ACACGGTCGTGTCCAAGACTGTGTCCACACGTGTAACTCACTGAGTAAGGTT
* * *
34620309 ACACGGTCGTGTCCAAGCCTGTGTCCTCACGTGTAATTCACTGAGTAAGGTT
1 ACACGGTCGTGTCCAAGACTGTGTCCACACGTGTAACTCACTGAGTAAGGTT
*
34620361 ACACGGTCGTGTCACACGACTGTGT-CACACGT
1 ACACGGTCGTGTC-CAAGACTGTGTCCACACGT
34620393 CCGTCTGCCA
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
52 68 0.88
53 9 0.12
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (52 bp):
ACACGGTCGTGTCCAAGACTGTGTCCACACGTGTAACTCACTGAGTAAGGTT
Found at i:34621264 original size:40 final size:40
Alignment explanation
Indices: 34621119--34621354 Score: 226
Period size: 40 Copynumber: 5.9 Consensus size: 40
34621109 GATTCAAGGT
* * * * * * * *
34621119 TACCAAAGTATAAACAAGGGCACATAAGTGCATTCTGGGC
1 TACCGAAGTACAAACAAGGACACGTATGTGCAATCAGGGG
* * *
34621159 TACCGAAGTACAAATAATGG-CATGTATTTGCAATCAGGGG
1 TACCGAAGTACAAACAA-GGACACGTATGTGCAATCAGGGG
* * * * *
34621199 TATCAAAGTTCAAGCAGGGGA-ACGTATGTGCAATCAGGGG
1 TACCGAAGTACAAACA-AGGACACGTATGTGCAATCAGGGG
* * **
34621239 CACCGAAGTACAAACAACGACACGTATGCACAATCAGGGG
1 TACCGAAGTACAAACAAGGACACGTATGTGCAATCAGGGG
*
34621279 TACCGAAGTACAAACAGGGACACGTATGCT-CAATCAGGGG
1 TACCGAAGTACAAACAAGGACACGTATG-TGCAATCAGGGG
*
34621319 TACCGAAGTACAAACAAGGGCACGTATGTGCAATCA
1 TACCGAAGTACAAACAAGGACACGTATGTGCAATCA
34621355 TCAATATGAT
Statistics
Matches: 157, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
39 3 0.02
40 152 0.97
41 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.18
Consensus pattern (40 bp):
TACCGAAGTACAAACAAGGACACGTATGTGCAATCAGGGG
Found at i:34621296 original size:20 final size:20
Alignment explanation
Indices: 34621268--34621334 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
34621258 ACACGTATGC
*
34621268 ACAATCAGGGGTACCGAAGT
1 ACAAACAGGGGTACCGAAGT
*
34621288 ACAAACA-GGG-ACACGTATGCT
1 ACAAACAGGGGTAC-CG-AAG-T
*
34621309 -CAATCAGGGGTACCGAAGT
1 ACAAACAGGGGTACCGAAGT
34621328 ACAAACA
1 ACAAACA
34621335 AGGGCACGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 12
0.68 0.09 0.23
Matches are distributed among these distances:
18 2 0.06
19 6 0.17
20 20 0.56
21 6 0.17
22 2 0.06
ACGTcount: A:0.39, C:0.22, G:0.25, T:0.13
Consensus pattern (20 bp):
ACAAACAGGGGTACCGAAGT
Found at i:34624794 original size:17 final size:17
Alignment explanation
Indices: 34624772--34624805 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
34624762 CACTAACATG
*
34624772 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
34624789 AAAATGCAATGACAATA
1 AAAATGCAATGACAATA
34624806 TATACTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:34630214 original size:34 final size:34
Alignment explanation
Indices: 34630149--34630214 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
34630139 AAGAAAGAAG
**
34630149 CAAAAATGAGTAAGAAAAAAAAGAATGTGAGATA
1 CAAAAATGAGTAAGAAAAAAAAGAAAATGAGATA
* *
34630183 CAAACATGAG-AAGAAAAGGAAAGAAAATGAGA
1 CAAAAATGAGTAAGAAAA-AAAAGAAAATGAGA
34630215 GAATGATTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 7 0.26
34 20 0.74
ACGTcount: A:0.62, C:0.05, G:0.23, T:0.11
Consensus pattern (34 bp):
CAAAAATGAGTAAGAAAAAAAAGAAAATGAGATA
Found at i:34644236 original size:54 final size:54
Alignment explanation
Indices: 34644154--34644258 Score: 165
Period size: 54 Copynumber: 1.9 Consensus size: 54
34644144 CTTATTATTT
* *
34644154 CAAGTCAATGAGTTACACGGCCCAGCACACGACCTGTGACACACCTGTGTGTCA
1 CAAGTCAAAGAGTTACACGGCCCAGCACACGACCTGTGACACAACTGTGTGTCA
* * *
34644208 CAAGTCAAAGAGTTACACGGCCTAGCACACGGCCTGTGACATAACTGTGTG
1 CAAGTCAAAGAGTTACACGGCCCAGCACACGACCTGTGACACAACTGTGTG
34644259 ACCTAACTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.29, C:0.29, G:0.24, T:0.19
Consensus pattern (54 bp):
CAAGTCAAAGAGTTACACGGCCCAGCACACGACCTGTGACACAACTGTGTGTCA
Found at i:34644275 original size:54 final size:54
Alignment explanation
Indices: 34644158--34644281 Score: 151
Period size: 54 Copynumber: 2.3 Consensus size: 54
34644148 TTATTTCAAG
* * *
34644158 TCAATGAGTTACACGGCCCAGCACACGACCTGTGACACACCTGTGTGTCACAAG
1 TCAATGAGTTACACGGCCCAGCACACGACCTGTGACACAACTGTGTGACACAAC
* * * *
34644212 TCAAAGAGTTACACGGCCTAGCACACGGCCTGTGACATAACTGTGTGAC-CTAAC
1 TCAATGAGTTACACGGCCCAGCACACGACCTGTGACACAACTGTGTGACAC-AAC
* *
34644266 TTATTGAGTTACACGG
1 TCAATGAGTTACACGG
34644282 TTTAAGACAC
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.02
54 58 0.98
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (54 bp):
TCAATGAGTTACACGGCCCAGCACACGACCTGTGACACAACTGTGTGACACAAC
Found at i:34645366 original size:13 final size:13
Alignment explanation
Indices: 34645348--34645372 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34645338 ATCACTCTAT
34645348 AAATATTTAATAA
1 AAATATTTAATAA
34645361 AAATATTTAATA
1 AAATATTTAATA
34645373 GCTCAGTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATATTTAATAA
Found at i:34648250 original size:25 final size:25
Alignment explanation
Indices: 34648222--34648285 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
34648212 ATACATGTAT
34648222 GCTCATACGAGCT-ATGAATCGATAA
1 GCTCATACGAGCTGA-GAATCGATAA
*
34648247 GCTCATACGAGCTGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATCGATAA
*
34648272 GCTCATAAGAGCTG
1 GCTCATACGAGCTG
34648286 TGGTGTGTCC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 35 0.97
26 1 0.03
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (25 bp):
GCTCATACGAGCTGAGAATCGATAA
Found at i:34651888 original size:13 final size:14
Alignment explanation
Indices: 34651870--34651902 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
34651860 TCGTATACAC
34651870 TTCATATATC-AGT
1 TTCATATATCTAGT
*
34651883 TTCATATATCTATT
1 TTCATATATCTAGT
34651897 TTCATA
1 TTCATA
34651903 AAAAAATATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.52
Consensus pattern (14 bp):
TTCATATATCTAGT
Found at i:34653477 original size:33 final size:34
Alignment explanation
Indices: 34653426--34653557 Score: 133
Period size: 33 Copynumber: 3.7 Consensus size: 34
34653416 TTATCCGTTA
* *
34653426 TCGGTGGATTCAGCACTTAGCAACCACCAGTGAT
1 TCGGTGGAATCAGCACTTAGCAACCACCAATGAT
34653460 TCGG-GGAATCAGCACTTAGCAACCACTTCACATTTAAGAT
1 TCGGTGGAATCAGCACTTAGCAACCAC--CA-A--T--GAT
* * * *
34653500 ACGGTGGGATCAACACTTAGCAACCACCAATGAG
1 TCGGTGGAATCAGCACTTAGCAACCACCAATGAT
34653534 TCGG-GGAATCAGCACTTAGCAACC
1 TCGGTGGAATCAGCACTTAGCAACC
34653558 CCTTGGGGGA
Statistics
Matches: 81, Mismatches: 9, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
33 39 0.48
34 9 0.11
35 2 0.02
36 1 0.01
38 2 0.02
39 2 0.02
40 6 0.07
41 20 0.25
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (34 bp):
TCGGTGGAATCAGCACTTAGCAACCACCAATGAT
Found at i:34653624 original size:104 final size:104
Alignment explanation
Indices: 34653497--34653693 Score: 315
Period size: 104 Copynumber: 1.9 Consensus size: 104
34653487 TCACATTTAA
*
34653497 GATACGGTGGGATCAACACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTT
1 GATACGGTGGGATCAACACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGAAACCCCTT
*
34653562 GGGGGAATAAGAACTTAGCAACCCCCTTTTATATTCAAG
66 GAGGGAATAAGAACTTAGCAACCCCCTTTTATATTCAAG
* * *
34653601 GATACGGT-GGAGTCAGCACTTAGCAACCGCCAATGAGTCTGGGAATCAGCACTTAGAAACCCCT
1 GATACGGTGGGA-TCAACACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGAAACCCCT
* *
34653665 TGAGGGAATCAGCACTTAGCAACCCCCTT
65 TGAGGGAATAAGAACTTAGCAACCCCCTT
34653694 CGTATTCAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
103 3 0.04
104 82 0.96
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.20
Consensus pattern (104 bp):
GATACGGTGGGATCAACACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGAAACCCCTT
GAGGGAATAAGAACTTAGCAACCCCCTTTTATATTCAAG
Found at i:34653655 original size:33 final size:27
Alignment explanation
Indices: 34653613--34653690 Score: 84
Period size: 27 Copynumber: 2.7 Consensus size: 27
34653603 TACGGTGGAG
34653613 TCAGCACTTAGCAACCGCCAATGAGTCTGGGAA
1 TCAGCACTTAGCAACC-CC-ATGA----GGGAA
* *
34653646 TCAGCACTTAGAAACCCCTTGAGGGAA
1 TCAGCACTTAGCAACCCCATGAGGGAA
34653673 TCAGCACTTAGCAACCCC
1 TCAGCACTTAGCAACCCC
34653691 CTTCGTATTC
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 22 0.52
31 3 0.07
32 2 0.05
33 15 0.36
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.18
Consensus pattern (27 bp):
TCAGCACTTAGCAACCCCATGAGGGAA
Found at i:34653732 original size:104 final size:103
Alignment explanation
Indices: 34653463--34653702 Score: 301
Period size: 104 Copynumber: 2.3 Consensus size: 103
34653453 CAGTGATTCG
* * * * *
34653463 GGGAATCAGCACTTAGCAA-CCAC-TTCACATTTAA-GATACGGTGG-GATCAACACTTAGCAAC
1 GGGAATAAGAACTTAGCAACCCCCTTTCATATTCAAGGATACGGTGGAG-TC-ACACTTAGCAAC
* *
34653524 CACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTGG
64 CACCAATGAGTCGGGGAATCAGCACTTAGAAACCCCTTGA
*
34653564 GGGAATAAGAACTTAGCAACCCCCTTTTATATTCAAGGATACGGTGGAGTCAGCACTTAGCAACC
1 GGGAATAAGAACTTAGCAACCCCCTTTCATATTCAAGGATACGGTGGAGTCA-CACTTAGCAACC
* *
34653629 GCCAATGAGTCTGGGAATCAGCACTTAGAAACCCCTTGA
65 ACCAATGAGTCGGGGAATCAGCACTTAGAAACCCCTTGA
* * *
34653668 GGGAATCAGCACTTAGCAACCCCC-TTCGTATTCAA
1 GGGAATAAGAACTTAGCAACCCCCTTTCATATTCAA
34653703 TGTACTCCGG
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
101 17 0.14
102 3 0.03
103 18 0.15
104 81 0.68
105 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.21
Consensus pattern (103 bp):
GGGAATAAGAACTTAGCAACCCCCTTTCATATTCAAGGATACGGTGGAGTCACACTTAGCAACCA
CCAATGAGTCGGGGAATCAGCACTTAGAAACCCCTTGA
Found at i:34660330 original size:33 final size:33
Alignment explanation
Indices: 34660286--34660441 Score: 152
Period size: 33 Copynumber: 4.5 Consensus size: 33
34660276 ATCGGTGGAT
*
34660286 TCAGCACTTAGCAACCACCAGTGATTCAGGGAA
1 TCAGCACTTAGCAACCACCAGTAATTCAGGGAA
* * * *
34660319 TTAGCACTTAGCAACCCCTTCACATTTAAGATACGATGGG-A
1 TCAGCACTTAGCAA--CC-AC-CA-GT-A-ATTC-A-GGGAA
* * *
34660360 TCAGCACTTAGCAACCACTAGTAATCCGGGGAA
1 TCAGCACTTAGCAACCACCAGTAATTCAGGGAA
34660393 TCAGCACTTAGCAACCACCAGTAATTCAGGGAA
1 TCAGCACTTAGCAACCACCAGTAATTCAGGGAA
34660426 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
34660442 CCTTTCACAT
Statistics
Matches: 99, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
32 3 0.03
33 60 0.61
34 3 0.03
35 3 0.03
36 2 0.02
37 3 0.03
38 2 0.02
39 2 0.02
40 3 0.03
41 15 0.15
42 3 0.03
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.21
Consensus pattern (33 bp):
TCAGCACTTAGCAACCACCAGTAATTCAGGGAA
Found at i:34660512 original size:108 final size:107
Alignment explanation
Indices: 34660286--34660620 Score: 425
Period size: 108 Copynumber: 3.1 Consensus size: 107
34660276 ATCGGTGGAT
*
34660286 TCAGCACTTAGCAACCACCAGTGATTCAGGGAATTAGCACTTAGCAACCCC-TTCACATTTAAGA
1 TCAGCACTTAGCAACCACCAGT-ATTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGA
* * * * *
34660350 TACGATGGGATCAGCACTTAGCAACCACTAGT-AATCCGGGGAA
65 TACGGTGGGATCAGCACTTAGCAACCACCAATGAGT-CGAGGAA
34660393 TCAGCACTTAGCAACCACCAGTAATTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGA
1 TCAGCACTTAGCAACCACCAGT-ATTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGA
34660458 TACGGTGGGATCAGCACTTAGCAACCACCAATGAGTCGAGGAA
65 TACGGTGGGATCAGCACTTAGCAACCACCAATGAGTCGAGGAA
* ** * * *
34660501 CCAGCACTTAGCAACC-CC----TTGGGGGAATCAGCACTTAGCAACCCCCTTTTATATTCAAGG
1 TCAGCACTTAGCAACCACCAGTATTCAGGGAATCAGCACTTAGCAA-CCCCTTTCACATTTAA-G
* * *
34660561 ATACGGTGGAATAAACACTTAGCAACCACCAATGAGTC-AGGGAA
64 ATACGGTGGGATCAGCACTTAGCAACCACCAATGAGTCGA-GGAA
34660605 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
34660621 CCCTTCGTAT
Statistics
Matches: 206, Mismatches: 17, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
102 21 0.10
103 14 0.07
104 55 0.27
107 51 0.25
108 63 0.31
109 2 0.01
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (107 bp):
TCAGCACTTAGCAACCACCAGTATTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGAT
ACGGTGGGATCAGCACTTAGCAACCACCAATGAGTCGAGGAA
Found at i:34662908 original size:14 final size:14
Alignment explanation
Indices: 34662889--34662933 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
34662879 TAAGCAATGT
34662889 TAAAGAAAGAGATA
1 TAAAGAAAGAGATA
34662903 TAAAGAATAGA-ATA
1 TAAAGAA-AGAGATA
*
34662917 -AAGGAAAGAGATA
1 TAAAGAAAGAGATA
34662930 TAAA
1 TAAA
34662934 CAATAGAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 3 0.12
13 8 0.31
14 12 0.46
15 3 0.12
ACGTcount: A:0.64, C:0.00, G:0.20, T:0.16
Consensus pattern (14 bp):
TAAAGAAAGAGATA
Found at i:34662926 original size:27 final size:27
Alignment explanation
Indices: 34662889--34662950 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
34662879 TAAGCAATGT
*
34662889 TAAA-GAAAGAGATATAAAGAATAGAA
1 TAAAGGAAAGAGATATAAACAATAGAA
34662915 TAAAGGAAAGAGATATAAACAATAGAA
1 TAAAGGAAAGAGATATAAACAATAGAA
34662942 TAAAGGAAA
1 TAAAGGAAA
34662951 AAAGATGCTC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 4 0.12
27 30 0.88
ACGTcount: A:0.65, C:0.02, G:0.19, T:0.15
Consensus pattern (27 bp):
TAAAGGAAAGAGATATAAACAATAGAA
Found at i:34664464 original size:20 final size:20
Alignment explanation
Indices: 34664436--34664474 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
34664426 GTACTAATGA
*
34664436 TTGAGTTTTCTCTCACTTTT
1 TTGACTTTTCTCTCACTTTT
* *
34664456 TTGACTTTTTTGTCACTTT
1 TTGACTTTTCTCTCACTTT
34664475 GACTTTTTAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.10, C:0.18, G:0.10, T:0.62
Consensus pattern (20 bp):
TTGACTTTTCTCTCACTTTT
Found at i:34666898 original size:12 final size:12
Alignment explanation
Indices: 34666881--34666908 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
34666871 GTGATAGTTC
34666881 ATGAATGTGTTA
1 ATGAATGTGTTA
34666893 ATGAATGTGTTA
1 ATGAATGTGTTA
34666905 ATGA
1 ATGA
34666909 TCACTTTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.25, T:0.39
Consensus pattern (12 bp):
ATGAATGTGTTA
Found at i:34675540 original size:21 final size:22
Alignment explanation
Indices: 34675509--34675560 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
34675499 CAATTAAGAT
*
34675509 TAATAAAATAAATGAATAAAAG
1 TAATAAAATAAATAAATAAAAG
*
34675531 TAAT-AAATAAATAAATAAAAC
1 TAATAAAATAAATAAATAAAAG
*
34675552 TAACAAAAT
1 TAATAAAAT
34675561 TTAAAGTAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (22 bp):
TAATAAAATAAATAAATAAAAG
Found at i:34679831 original size:27 final size:27
Alignment explanation
Indices: 34679812--34680089 Score: 367
Period size: 27 Copynumber: 10.3 Consensus size: 27
34679802 GGGTATAACA
*
34679812 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
34679839 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
34679866 GTCATTTCACCCTGTGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
34679893 GTCATTCTACCCTATGGGGATATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
34679920 ATCATTTTACCATATGGGGATATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
34679947 GTCATTCTACCCTATGCGGAGTATTTCG
1 GTCATTTTACCCTATG-GGGGTATTTCG
* * * *
34679975 ATCATTTTACCATATGAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
34680002 GTCATTCTACCTTATGGGGGTATTTCT
1 GTCATTTTACCCTATGGGGGTATTTCG
*
34680029 GTCATTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
34680056 GTCATTTTACCCTATGGGGGTATTCCG
1 GTCATTTTACCCTATGGGGGTATTTCG
34680083 GTCATTT
1 GTCATTT
34680090 ATCGACCTCT
Statistics
Matches: 216, Mismatches: 34, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
27 195 0.90
28 21 0.10
ACGTcount: A:0.18, C:0.19, G:0.23, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:34680033 original size:136 final size:135
Alignment explanation
Indices: 34679812--34680088 Score: 378
Period size: 136 Copynumber: 2.0 Consensus size: 135
34679802 GGGTATAACA
* * * *
34679812 GTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTTCACC
1 GTCATTCTACCCTATGAGGGTATTTCGATCATTTTACCATATGAGGGTATTTCGGTCATTTCACC
*
34679877 CTGTGGGGGTATTTCGGTCATTCTACCCTATGGGGATATTTC-GATCATTTTACCATATGGGGAT
66 CTATGGGGGTATTTCGGTCATTCTACCCTATGGGGATATTTCAG-TCATTTTACCATATGGGGAT
**
34679941 ATTTTG
130 ATTCCG
* *
34679947 GTCATTCTACCCTATGCGGAGTATTTCGATCATTTTACCATATGAGGGTATTTTGGTCA-TTCTA
1 GTCATTCTACCCTATGAGG-GTATTTCGATCATTTTACCATATGAGGGTATTTCGGTCATTTC-A
* * * * * *
34680011 CCTTATGGGGGTATTTCTGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGG
64 CCCTATGGGGGTATTTCGGTCATTCTACCCTATGGGGATATTTCAGTCATTTTACCATATGGGGA
34680076 TATTCCG
129 TATTCCG
34680083 GTCATT
1 GTCATT
34680089 TATCGACCTC
Statistics
Matches: 124, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
135 20 0.16
136 103 0.83
137 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.23, T:0.40
Consensus pattern (135 bp):
GTCATTCTACCCTATGAGGGTATTTCGATCATTTTACCATATGAGGGTATTTCGGTCATTTCACC
CTATGGGGGTATTTCGGTCATTCTACCCTATGGGGATATTTCAGTCATTTTACCATATGGGGATA
TTCCG
Found at i:34690877 original size:25 final size:24
Alignment explanation
Indices: 34690832--34690905 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
34690822 TTCTAGCTCT
*
34690832 TATGAGCTTATTGATACTCAGCTTG
1 TATGAGCTTA-TGATATTCAGCTTG
* *
34690857 TATGAGCTTACTGCTATTCAGCTCG
1 TATGAGCTTA-TGATATTCAGCTTG
* * *
34690882 AAGGAGCTTATCGTTATTCAGCTT
1 TATGAGCTTAT-GATATTCAGCTT
34690906 AGAGGAGCTT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (24 bp):
TATGAGCTTATGATATTCAGCTTG
Found at i:34693147 original size:18 final size:19
Alignment explanation
Indices: 34693102--34693150 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
34693092 GAATATTTAC
*
34693102 ATAAAAATTAAACTAAGTAA
1 ATAAAAA-TAAACTAAATAA
34693122 A-AATAAATAAA-TAAATAA
1 ATAA-AAATAAACTAAATAA
34693140 ATAAAAATAAA
1 ATAAAAATAAA
34693151 AATAAAACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 14 0.54
19 8 0.31
20 4 0.15
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (19 bp):
ATAAAAATAAACTAAATAA
Found at i:34694557 original size:35 final size:35
Alignment explanation
Indices: 34694518--34694584 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
34694508 TTTTTTTATT
*
34694518 CTTTAAATGTTTATGTAAATTATGATAATCATAAA
1 CTTTAAATGTTTATGTAAATTATAATAATCATAAA
* *
34694553 CTTTAAATGTTTATGTAAGTTATAATTATCAT
1 CTTTAAATGTTTATGTAAATTATAATAATCAT
34694585 CTTTAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.46
Consensus pattern (35 bp):
CTTTAAATGTTTATGTAAATTATAATAATCATAAA
Found at i:34694603 original size:13 final size:13
Alignment explanation
Indices: 34694585--34694611 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34694575 TAATTATCAT
34694585 CTTTAAATTTTAA
1 CTTTAAATTTTAA
34694598 CTTTAAATTTTAA
1 CTTTAAATTTTAA
34694611 C
1 C
34694612 CCTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:34696855 original size:22 final size:23
Alignment explanation
Indices: 34696802--34696857 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
34696792 TTTAATTAAA
* * *
34696802 ATTAAAATTAAAATTATTTTTTT
1 ATTAAAATTAAAACTATATTGTT
*
34696825 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
34696847 ATTAAAATTAA
1 ATTAAAATTAA
34696858 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:34696870 original size:16 final size:16
Alignment explanation
Indices: 34696833--34696872 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
34696823 TTAATAAAAT
* *
34696833 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
34696849 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
34696865 TAAAATTA
1 TAAAATTA
34696873 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:34696951 original size:59 final size:59
Alignment explanation
Indices: 34696883--34697022 Score: 262
Period size: 59 Copynumber: 2.4 Consensus size: 59
34696873 TCAAATTATT
*
34696883 AATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
34696942 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
*
34697001 AATTATTATTTGTATTAATTGT
1 AATTATTAATTGTATTAATTGT
34697023 ATTAATTGTT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 79 1.00
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (59 bp):
AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
Found at i:34697168 original size:22 final size:24
Alignment explanation
Indices: 34697128--34697171 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
34697118 AAATAAACTT
34697128 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAACTATTATATTTTA
34697152 AAAATAAAAAA-TA-TATATTT
1 AAAATAAAAAACTATTATATTT
34697172 AATATTATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 2 0.10
24 11 0.55
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (24 bp):
AAAATAAAAAACTATTATATTTTA
Found at i:34698174 original size:21 final size:22
Alignment explanation
Indices: 34698139--34698180 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
34698129 TCTTTGATCG
*
34698139 TAAAACAATTCTTTAAAAATTT
1 TAAAACAATGCTTTAAAAATTT
34698161 TAAAA-AATGCTTTAAAAATT
1 TAAAACAATGCTTTAAAAATT
34698181 CAAATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.38
Consensus pattern (22 bp):
TAAAACAATGCTTTAAAAATTT
Found at i:34699632 original size:48 final size:48
Alignment explanation
Indices: 34699571--34699695 Score: 160
Period size: 48 Copynumber: 2.6 Consensus size: 48
34699561 TATATTTTTC
* * * * *
34699571 TCAAGCAACGAAAAGACTGAGAAATAAAAGGGGCGGGATTTTGGGGTT
1 TCAAGCAAAGAAAAGACTGAGAAAGAAAAGGGACCGAATTTTGGGGTT
* ** *
34699619 TCAAGTAAAGAAAAGTTTGAGAACGAAAAGGGACCGAATTTTGGGGTT
1 TCAAGCAAAGAAAAGACTGAGAAAGAAAAGGGACCGAATTTTGGGGTT
*
34699667 TCAAGCAAACAAAAGACTGAGAAAGAAAA
1 TCAAGCAAAGAAAAGACTGAGAAAGAAAA
34699696 TAATTCGTGT
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 63 1.00
ACGTcount: A:0.44, C:0.10, G:0.28, T:0.18
Consensus pattern (48 bp):
TCAAGCAAAGAAAAGACTGAGAAAGAAAAGGGACCGAATTTTGGGGTT
Found at i:34699813 original size:41 final size:41
Alignment explanation
Indices: 34699768--34699864 Score: 115
Period size: 41 Copynumber: 2.4 Consensus size: 41
34699758 AAAAAAAAAA
* **
34699768 TTGTGGC-TTTTTTTCCATAAATGCCGCTATTGCTTTACCTG
1 TTGTGGCGTTTTTCT-CATAAACACCGCTATTGCTTTACCTG
* * *
34699809 TTGTGGCGTTTTTCTCATAAACACCGCTATTGTTTTACTTA
1 TTGTGGCGTTTTTCTCATAAACACCGCTATTGCTTTACCTG
*
34699850 TTGCGGCGTTTTTCT
1 TTGTGGCGTTTTTCT
34699865 ATTAGCGCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 42 0.88
42 6 0.12
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (41 bp):
TTGTGGCGTTTTTCTCATAAACACCGCTATTGCTTTACCTG
Found at i:34711759 original size:19 final size:19
Alignment explanation
Indices: 34711735--34711780 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
34711725 AACCAAAATT
*
34711735 TATTTTACTTTATTATATA
1 TATTTTACTTTATTATACA
*
34711754 TATTTTAATTTTATTATACA
1 TATTTT-ACTTTATTATACA
34711774 TATTTTA
1 TATTTTA
34711781 TTACCTCCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (19 bp):
TATTTTACTTTATTATACA
Found at i:34711768 original size:20 final size:20
Alignment explanation
Indices: 34711743--34711780 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
34711733 TTTATTTTAC
*
34711743 TTTATTATATATATTTTAAT
1 TTTATTATACATATTTTAAT
34711763 TTTATTATACATATTTTA
1 TTTATTATACATATTTTA
34711781 TTACCTCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTATTATACATATTTTAAT
Found at i:34721992 original size:26 final size:26
Alignment explanation
Indices: 34721954--34722014 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
34721944 TACCCTTTGG
* * *
34721954 GGGTATTTCGATAATTTTCCTATCAA
1 GGGTATTTTGATAATTTACCCATCAA
*
34721980 GGGTATTTTGATAATTTACCCATCGA
1 GGGTATTTTGATAATTTACCCATCAA
34722006 GGGTATTTT
1 GGGTATTTT
34722015 AGTACAGTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.43
Consensus pattern (26 bp):
GGGTATTTTGATAATTTACCCATCAA
Found at i:34722269 original size:19 final size:19
Alignment explanation
Indices: 34722234--34722276 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
34722224 GTGTGGGGCC
*
34722234 CACGAGCCCATTGGACCCA
1 CACGAGCCCATTCGACCCA
34722253 CACGA-CCCATTTCGACCCA
1 CACGAGCCCA-TTCGACCCA
34722272 -ACGAG
1 CACGAG
34722277 GCTCATAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.28, C:0.42, G:0.19, T:0.12
Consensus pattern (19 bp):
CACGAGCCCATTCGACCCA
Found at i:34726549 original size:64 final size:64
Alignment explanation
Indices: 34726448--34726575 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
34726438 TTGACTATAT
34726448 CTCTATGTCAATTCAATCGATTAAAAAAATTTTAATAAGCAAATGTGTTAATGCACATACATAC
1 CTCTATGTCAATTCAATCGATTAAAAAAATTTTAATAAGCAAATGTGTTAATGCACATACATAC
* *
34726512 CTCTATGTTAATTCAATCGATTAAACAAATTTTAATAAGCAAATGTGTTAATGCACATACATAC
1 CTCTATGTCAATTCAATCGATTAAAAAAATTTTAATAAGCAAATGTGTTAATGCACATACATAC
34726576 TTATGAAATT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (64 bp):
CTCTATGTCAATTCAATCGATTAAAAAAATTTTAATAAGCAAATGTGTTAATGCACATACATAC
Found at i:34727767 original size:40 final size:40
Alignment explanation
Indices: 34727678--34727903 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
34727668 GACTAGCATA
* * *
34727678 AAGCTTGCGAGGCACTAAGCCT-AAGT-AC-CACCGACACG
1 AAGCCTGCTAGGCACTAAGCCTGAA-TAACACACCGGCACG
** * *
34727716 AAGCCTGCTAGGTGCTAAACCTGAATAACACACTGGCACG
1 AAGCCTGCTAGGCACTAAGCCTGAATAACACACCGGCACG
** * *
34727756 AAGCCTGCTAGGCACTAAGCCTGAATAACACAATGACATG
1 AAGCCTGCTAGGCACTAAGCCTGAATAACACACCGGCACG
*
34727796 AAGCCTGCTAGGCACTAAGCCTGAATAACACACCGGCATG
1 AAGCCTGCTAGGCACTAAGCCTGAATAACACACCGGCACG
* *
34727836 AAGCCTGCTAAGCACTAAGCCTGAATAACACACCGGCACA
1 AAGCCTGCTAGGCACTAAGCCTGAATAACACACCGGCACG
* **
34727876 AAACCTAATAGGCACTAAGCCTGAATAA
1 AAGCCTGCTAGGCACTAAGCCTGAATAA
34727904 TTATAAGGTA
Statistics
Matches: 162, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
38 18 0.11
39 4 0.02
40 140 0.86
ACGTcount: A:0.36, C:0.28, G:0.20, T:0.15
Consensus pattern (40 bp):
AAGCCTGCTAGGCACTAAGCCTGAATAACACACCGGCACG
Found at i:34727859 original size:120 final size:116
Alignment explanation
Indices: 34727631--34727903 Score: 309
Period size: 120 Copynumber: 2.3 Consensus size: 116
34727621 AAAACTTGAT
* * ** * *
34727631 ACACCAGCACAAAGCCTGCTAGGCATTAAGCCT-AAT-TGACTAGCATAAAGCTTGCGAGGCACT
1 ACACCGGCACAAAGCCTGCTAGGCACTAAGCCTGAATAACACAAGCATAAAGCCTGCGAGGCACT
* **
34727694 AAGCCTAAGTACCACCGACACGAAGCCTGCTAGGTGCTAAACCTGAATAAC
66 AAGCCTAAGTACCACCGACACGAAGCCTGCTAAGCACTAAACCTGAATAAC
* * * *
34727745 ACACTGGCACGAAGCCTGCTAGGCACTAAGCCTGAATAACACAATGACATGAAGCCTGCTAGGCA
1 ACACCGGCACAAAGCCTGCTAGGCACTAAGCCTGAATAACACAA-G-CATAAAGCCTGCGAGGCA
* * *
34727810 CTAAGCCTGAA-TAACACACCGGCATGAAGCCTGCTAAGCACTAAGCCTGAATAAC
64 CTAAGCCT-AAGT-AC-CACCGACACGAAGCCTGCTAAGCACTAAACCTGAATAAC
* **
34727865 ACACCGGCACAAAACCTAATAGGCACTAAGCCTGAATAA
1 ACACCGGCACAAAGCCTGCTAGGCACTAAGCCTGAATAA
34727904 TTATAAGGTA
Statistics
Matches: 131, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
114 29 0.22
115 3 0.02
116 3 0.02
117 1 0.01
118 24 0.18
119 4 0.03
120 67 0.51
ACGTcount: A:0.36, C:0.28, G:0.20, T:0.16
Consensus pattern (116 bp):
ACACCGGCACAAAGCCTGCTAGGCACTAAGCCTGAATAACACAAGCATAAAGCCTGCGAGGCACT
AAGCCTAAGTACCACCGACACGAAGCCTGCTAAGCACTAAACCTGAATAAC
Found at i:34735583 original size:50 final size:49
Alignment explanation
Indices: 34735489--34735666 Score: 187
Period size: 51 Copynumber: 3.6 Consensus size: 49
34735479 AAAGTGAAAG
* *
34735489 TGAT-GGTCACGTGTGTAGTACTATGTGCATGCTACTACGTGTACCAGAA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAG-A
* * * *
34735538 TGATAGGTCGCATGTGCAGTACTATGTGCAGGCTACTATGCGTACCAGA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA
* * * * * * *
34735587 TAGTTTCGATCACGTGTGTAGTACTATGTGCAGGCTACTAGGTGTATCGGA
1 T-G-ATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA
34735638 TGATAATGGTCACATGTGTAGTACTATGT
1 TGAT-A-GGTCACATGTGTAGTACTATGT
34735667 AAATCCTACT
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
49 7 0.07
50 39 0.38
51 58 0.56
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (49 bp):
TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA
Found at i:34735739 original size:45 final size:45
Alignment explanation
Indices: 34735683--34735777 Score: 163
Period size: 45 Copynumber: 2.1 Consensus size: 45
34735673 TACTATATGA
* *
34735683 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCC
*
34735728 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCC
34735773 ACCGA
1 ACCGA
34735778 GTATCGTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCC
Found at i:34741024 original size:6 final size:6
Alignment explanation
Indices: 34741013--34741040 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
34741003 AGGCCACTAT
34741013 GTGAAA GTGAAA GTGAAA GTGAAA GTGA
1 GTGAAA GTGAAA GTGAAA GTGAAA GTGA
34741041 TGGTCACGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.36, T:0.18
Consensus pattern (6 bp):
GTGAAA
Found at i:34741163 original size:51 final size:50
Alignment explanation
Indices: 34741096--34741227 Score: 167
Period size: 51 Copynumber: 2.6 Consensus size: 50
34741086 TGATAGGTCG
*
34741096 CATGTGTAATACTATGTGCAGGCTACTATGCATACCGGATAGCT-TCGATCA
1 CATGTGTAGTACTATGTGCAGGCTACTATGCATACCGGATAG-TAT-GATCA
* * ** * *
34741147 CATGTGTAGTACTATGTACAGGCTACTACGTGTATCGGATAGTGATGGTCA
1 CATGTGTAGTACTATGTGCAGGCTACTATGCATACCGGATAGT-ATGATCA
34741198 CATGTGTAGTACTATGTGCAGGCTACTATG
1 CATGTGTAGTACTATGTGCAGGCTACTATG
34741228 TGAACCGGTA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 1 0.01
51 68 0.97
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
CATGTGTAGTACTATGTGCAGGCTACTATGCATACCGGATAGTATGATCA
Found at i:34741229 original size:26 final size:26
Alignment explanation
Indices: 34741148--34741229 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
34741138 CTTCGATCAC
*
34741148 ATGTGTAGTACTATGTACAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
* *
34741174 ACGTGTA-T-CGGATAGTG-ATGG-TCAC-
1 ATGTGTAGTAC-TAT-GTGCA-GGCT-ACT
34741199 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
34741225 ATGTG
1 ATGTG
34741230 AACCGGTAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 18
0.65 0.08 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
ATGTGTAGTACTATGTGCAGGCTACT
Found at i:34741802 original size:51 final size:51
Alignment explanation
Indices: 34741674--34741866 Score: 203
Period size: 51 Copynumber: 3.8 Consensus size: 51
34741664 TGAAAGTGAA
* * * *** *
34741674 AGTGATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACATGTACTAGA-
1 AGTGATGATCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAT
*
34741724 A-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAT
1 AGTGAT-GATCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAT
* ** * * * *
34741775 AGCT-TTGATCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
1 AG-TGATGATCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAT
*
34741826 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATG
1 AGTGATGATCACATGTGTAGTACTATGTGCAGGCTACTATG
34741867 TGAACCGATA
Statistics
Matches: 119, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
49 4 0.03
50 40 0.34
51 73 0.61
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (51 bp):
AGTGATGATCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAT
Found at i:34741868 original size:26 final size:26
Alignment explanation
Indices: 34741788--34741868 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
34741778 TTTGATCATG
34741788 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
34741814 CGTGTA-T-CGGATAGTG-ATGG-TCAC-A
1 TGTGTAGTAC-TAT-GTGCA-GGCT-ACTA
34741839 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
34741865 TGTG
1 TGTG
34741869 AACCGATACC
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:34747185 original size:51 final size:50
Alignment explanation
Indices: 34747065--34747249 Score: 187
Period size: 51 Copynumber: 3.7 Consensus size: 50
34747055 AAAGTGATGG
* * * ** *
34747065 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAGT-AT-GA
* *
34747115 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCATACCGGATAGCT-TCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAG-TAT-GA
* ** * *
34747166 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGTGATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAGT-ATGA
34747217 TCACATGTGTAGTACTATGTGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
34747250 TGAACCGGTA
Statistics
Matches: 113, Mismatches: 17, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
50 36 0.32
51 75 0.66
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAGTATGA
Found at i:34747193 original size:101 final size:102
Alignment explanation
Indices: 34747065--34747249 Score: 311
Period size: 101 Copynumber: 1.8 Consensus size: 102
34747055 AAAGTGATGG
* * *
34747065 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGAT-GGTCACATGTGTAGT
34747128 ACTATGTGCAGGCTACTATGCATACCGGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGCATACCGGATAGCTTCGA
*
34747166 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGTGATGGTCACATGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
34747231 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
34747250 TGAACCGGTA
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
101 39 0.50
102 35 0.45
103 4 0.05
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (102 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCATACCGGATAGCTTCGA
Found at i:34747251 original size:26 final size:26
Alignment explanation
Indices: 34747170--34747251 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 26
34747160 CTTCGATCAC
34747170 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
* *
34747196 ACGTGTA-T-CAGATAGTG-ATGG-TCAC-
1 ATGTGTAGTAC-TAT-GTGCA-GGCT-ACT
34747221 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
34747247 ATGTG
1 ATGTG
34747252 AACCGGTATC
Statistics
Matches: 43, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.42
26 23 0.53
27 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
ATGTGTAGTACTATGTGCAGGCTACT
Found at i:34749038 original size:51 final size:51
Alignment explanation
Indices: 34748905--34749091 Score: 193
Period size: 51 Copynumber: 3.7 Consensus size: 51
34748895 AGTGAAAGTG
* * *
34748905 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACTGGA-A-TG
1 ATGGTCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGATAGTA
*** * *
34748954 ATAGGTCGCATGTGTAGTACTATGTGCTGGCTACTACGCGTACTGGATAGT-
1 AT-GGTCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGATAGTA
* * * *
34749005 TTCGGTCATGTGTATAGTACTATGTGCATGCTACTACGTGTA-TCGGATGGTA
1 AT-GGTCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTACT-GGATAGTA
* *
34749057 ATGGTCATATGTGTAGTACTACGTGCAGGCTACTA
1 ATGGTCATGTGTGTAGTACTATGTGCAGGCTACTA
34749092 TGTGAACCGA
Statistics
Matches: 113, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
49 2 0.02
50 40 0.35
51 69 0.61
52 2 0.02
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.33
Consensus pattern (51 bp):
ATGGTCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGATAGTA
Found at i:34749038 original size:101 final size:102
Alignment explanation
Indices: 34748907--34749091 Score: 250
Period size: 101 Copynumber: 1.8 Consensus size: 102
34748897 TGAAAGTGAT
* * *
34748907 GGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTA-CTGGAATGAT-A-GGTCGCATGTGT
1 GGTCACGTGTATAGTACTATGTGCAGGCTACTACGTGTATC-GG-ATGATAATGGTCACATGTGT
* *
34748969 AGTACTATGTGCTGGCTACTACGCGTACTGGATAGTTTC
64 AGTACTACGTGCAGGCTACTACGCGTACTGGATAGTTTC
* * * *
34749008 GGTCATGTGTATAGTACTATGTGCATGCTACTACGTGTATCGGATGGTAATGGTCATATGTGTAG
1 GGTCACGTGTATAGTACTATGTGCAGGCTACTACGTGTATCGGATGATAATGGTCACATGTGTAG
34749073 TACTACGTGCAGGCTACTA
66 TACTACGTGCAGGCTACTA
34749092 TGTGAACCGA
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
100 4 0.06
101 38 0.53
102 30 0.42
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (102 bp):
GGTCACGTGTATAGTACTATGTGCAGGCTACTACGTGTATCGGATGATAATGGTCACATGTGTAG
TACTACGTGCAGGCTACTACGCGTACTGGATAGTTTC
Found at i:34749188 original size:45 final size:45
Alignment explanation
Indices: 34749097--34749188 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
34749087 TACTATGTGA
* * * *
34749097 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCC
*
34749142 ACCGGACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCC
34749187 AC
1 AC
34749189 TGAGTATCTG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCC
Found at i:34768669 original size:47 final size:47
Alignment explanation
Indices: 34768603--34768987 Score: 583
Period size: 47 Copynumber: 8.1 Consensus size: 47
34768593 GAAATGATAG
*
34768603 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
34768650 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
34768697 TAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34768744 TAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGA
*
34768794 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
34768843 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34768890 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
34768937 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
34768984 TAAG
1 TAAG
34768988 TCCCGAAGGG
Statistics
Matches: 318, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 29 0.09
47 196 0.62
49 49 0.15
50 14 0.04
51 30 0.09
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:34769162 original size:37 final size:37
Alignment explanation
Indices: 34769106--34769184 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
34769096 CCGAGCTCTA
* * *
34769106 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
34769143 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
34769180 AAGAC
1 AAGAC
34769185 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:34772648 original size:41 final size:41
Alignment explanation
Indices: 34772521--34772648 Score: 157
Period size: 41 Copynumber: 3.1 Consensus size: 41
34772511 CTTTCGAAAA
* * * *
34772521 TTTAGCGGCATTTTTGAGGAAGCGCCGCTAAGGCTCGGGGC
1 TTTAACGGCATTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* * *
34772562 TTTAGCGGCATTTTTAAGAAAGCACCGCTAATGCTCAGGGC
1 TTTAACGGCATTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* * * *
34772603 TTTAATGGCGTTTTTGAGAAAGCGCTGCTAATGCTCAGGGA
1 TTTAACGGCATTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
34772644 TTTAA
1 TTTAA
34772649 AATAATTTAA
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (41 bp):
TTTAACGGCATTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
Found at i:34772921 original size:7 final size:7
Alignment explanation
Indices: 34772909--34772939 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
34772899 GGTTTAGAGG
34772909 TTATGGT
1 TTATGGT
34772916 TTATGGT
1 TTATGGT
34772923 TTATGGT
1 TTATGGT
34772930 TTATGGT
1 TTATGGT
34772937 TTA
1 TTA
34772940 AAGGTTGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58
Consensus pattern (7 bp):
TTATGGT
Found at i:34772925 original size:21 final size:22
Alignment explanation
Indices: 34772894--34772939 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
34772884 GGTTTATAGA
34772894 TTATGGGTTTA-GAGGTTATGGT
1 TTATGGGTTTATG-GGTTATGGT
*
34772916 TTAT-GGTTTATGGTTTATGGT
1 TTATGGGTTTATGGGTTATGGT
34772937 TTA
1 TTA
34772940 AAGGTTGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.52
Consensus pattern (22 bp):
TTATGGGTTTATGGGTTATGGT
Found at i:34772951 original size:21 final size:21
Alignment explanation
Indices: 34772927--34772966 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
34772917 TATGGTTTAT
*
34772927 GGTTTATGGTTTAAAGGTTGG
1 GGTTTAAGGTTTAAAGGTTGG
*
34772948 GGTTTAAGGTTTAGAGGTT
1 GGTTTAAGGTTTAAAGGTT
34772967 ATGTATTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.42
Consensus pattern (21 bp):
GGTTTAAGGTTTAAAGGTTGG
Found at i:34773017 original size:35 final size:37
Alignment explanation
Indices: 34772950--34773019 Score: 99
Period size: 35 Copynumber: 1.9 Consensus size: 37
34772940 AAGGTTGGGG
34772950 TTTAAGGTTTAGAGGTTATGTATTAAGGGTTTAGAGT
1 TTTAAGGTTTAGAGGTTATGTATTAAGGGTTTAGAGT
* * *
34772987 TTTAGGGTTTAGA-TTTATG-ATTTAGGGTTTAGA
1 TTTAAGGTTTAGAGGTTATGTATTAAGGGTTTAGA
34773020 TTAACTAGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 13 0.43
36 5 0.17
37 12 0.40
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.46
Consensus pattern (37 bp):
TTTAAGGTTTAGAGGTTATGTATTAAGGGTTTAGAGT
Found at i:34773347 original size:7 final size:7
Alignment explanation
Indices: 34773337--34773369 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
34773327 GGGTTTTATA
34773337 GTTTAAG
1 GTTTAAG
34773344 GTTTAAG
1 GTTTAAG
34773351 GTTTAAG
1 GTTTAAG
*
34773358 GTTTAAT
1 GTTTAAG
34773365 GTTTA
1 GTTTA
34773370 GTATTTTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.48
Consensus pattern (7 bp):
GTTTAAG
Found at i:34774488 original size:6 final size:6
Alignment explanation
Indices: 34774464--34774506 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
34774454 GAATGAATCG
* * * *
34774464 GCGTCT GCATCT GCATCT GTGTCT GCGTCT GCGTCA GCGTCT G
1 GCGTCT GCGTCT GCGTCT GCGTCT GCGTCT GCGTCT GCGTCT G
34774507 TGGATAAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.07, C:0.30, G:0.30, T:0.33
Consensus pattern (6 bp):
GCGTCT
Found at i:34778965 original size:42 final size:42
Alignment explanation
Indices: 34778872--34779023 Score: 216
Period size: 42 Copynumber: 3.6 Consensus size: 42
34778862 TCAAAGCATT
* * *
34778872 GCTAAAAGTCTTGAGCTATAGCGGTGTTTGTGGA-AAAAGCGCC
1 GCTAAAGGTCTTGATCTATAGCGGCGTTTGT--ATAAAAGCGCC
34778915 GCTAAAGGTCTTGATCTATAGCGGCGTTTGTATAAAAGCGCC
1 GCTAAAGGTCTTGATCTATAGCGGCGTTTGTATAAAAGCGCC
* * *
34778957 GCTAAAGGTCTTGATCTATGGCGGCGTTTGTGTAAAAGTGCC
1 GCTAAAGGTCTTGATCTATAGCGGCGTTTGTATAAAAGCGCC
*
34778999 GCTAAAGGTCCTGATCTATAGCGGC
1 GCTAAAGGTCTTGATCTATAGCGGC
34779024 ATTTATTTCT
Statistics
Matches: 100, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
41 1 0.01
42 71 0.71
43 28 0.28
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (42 bp):
GCTAAAGGTCTTGATCTATAGCGGCGTTTGTATAAAAGCGCC
Found at i:34783748 original size:25 final size:25
Alignment explanation
Indices: 34783710--34783803 Score: 91
Period size: 25 Copynumber: 3.8 Consensus size: 25
34783700 CATTTACATA
*
34783710 TATGCTCATACGAGCTGTGAATCGG
1 TATGCTCACACGAGCTGTGAATCGG
* *
34783735 TATGCTCACTCGAGCTGT-AGATCAG
1 TATGCTCACACGAGCTGTGA-ATCGG
* * * * *
34783760 TATGCTCTCACAAGCTATAAATCGA
1 TATGCTCACACGAGCTGTGAATCGG
*
34783785 TATGCTCACACGAGTTGTG
1 TATGCTCACACGAGCTGTG
34783804 GGTCATAATG
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
24 1 0.02
25 51 0.96
26 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
TATGCTCACACGAGCTGTGAATCGG
Found at i:34785479 original size:55 final size:55
Alignment explanation
Indices: 34785394--34785538 Score: 175
Period size: 55 Copynumber: 2.6 Consensus size: 55
34785384 CAGAAAATGA
* * **
34785394 AAGCCTTTGTCGCAATCTATGAATTGGAAGCTTTCATGATGTATCTATAAAACAG
1 AAGCCTTTGTGGCAATCTATGAAATGGAAGCTTTCATGACATATCTATAAAACAG
* * * * **
34785449 AAGCCTTTATGGCAATCTATGAAATAGAAGCCTTCGTGACATATCTATAAAATGG
1 AAGCCTTTGTGGCAATCTATGAAATGGAAGCTTTCATGACATATCTATAAAACAG
34785504 AAGCCTTTGTGAG-AATCTATGAAATGGAAGTCTTT
1 AAGCCTTTGTG-GCAATCTATGAAATGGAAG-CTTT
34785539 GAGGCAATCT
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
55 71 0.95
56 4 0.05
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (55 bp):
AAGCCTTTGTGGCAATCTATGAAATGGAAGCTTTCATGACATATCTATAAAACAG
Found at i:34785565 original size:55 final size:55
Alignment explanation
Indices: 34785387--34785569 Score: 142
Period size: 55 Copynumber: 3.3 Consensus size: 55
34785377 AACACGCCAG
* * * * * **
34785387 AAAATGAAAGCCTTTGTCG-CAATCTATGAATTGGAAGCTTTC-ATGATGTATCTAT
1 AAAATGGAAGCCTTTGT-GAGAATCTATGAAATAGAAGCCTTCGA-GACATATCTAT
** * *
34785442 AAAACAGAAGCCTTTATG-GCAATCTATGAAATAGAAGCCTTCGTGACATATCTAT
1 AAAATGGAAGCCTTTGTGAG-AATCTATGAAATAGAAGCCTTCGAGACATATCTAT
* * * *
34785497 AAAATGGAAGCCTTTGTGAGAATCTATGAAATGGAAGTCTTTGAGGCA-ATCTAT
1 AAAATGGAAGCCTTTGTGAGAATCTATGAAATAGAAGCCTTCGAGACATATCTAT
*
34785551 GGAAA-GGAATGCCTTTGTG
1 -AAAATGGAA-GCCTTTGTG
34785570 GCACATTCTA
Statistics
Matches: 103, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
54 11 0.11
55 91 0.88
56 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.30
Consensus pattern (55 bp):
AAAATGGAAGCCTTTGTGAGAATCTATGAAATAGAAGCCTTCGAGACATATCTAT
Found at i:34785567 original size:28 final size:27
Alignment explanation
Indices: 34785388--34785572 Score: 117
Period size: 27 Copynumber: 6.7 Consensus size: 27
34785378 ACACGCCAGA
* **
34785388 AAATGAAAGCCTTTGTCGCAATCTATG
1 AAATGGAAGCCTTTGAGGCAATCTATG
* * * * *
34785415 AATTGGAAGCTTTCATGATG-TATCTATA
1 AAATGGAAGCCTT--TGAGGCAATCTATG
**
34785443 AAACAGAAGCCTTT-ATGGCAATCTATG
1 AAATGGAAGCCTTTGA-GGCAATCTATG
* * * * *
34785470 AAATAGAAGCCTTCGTGACATATCTATA
1 AAATGGAAGCCTTTGAGGCA-ATCTATG
*
34785498 AAATGGAAGCCTTTGTGAG-AATCTATG
1 AAATGGAAGCCTTTGAG-GCAATCTATG
*
34785525 AAATGGAAGTCTTTGAGGCAATCTATGG
1 AAATGGAAGCCTTTGAGGCAATCTAT-G
*
34785553 AAA-GGAATGCCTTTGTGGCA
1 AAATGGAA-GCCTTTGAGGCA
34785573 CATTCTAAAG
Statistics
Matches: 121, Mismatches: 27, Indels: 19
0.72 0.16 0.11
Matches are distributed among these distances:
25 1 0.01
26 3 0.02
27 63 0.52
28 51 0.42
29 3 0.02
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.30
Consensus pattern (27 bp):
AAATGGAAGCCTTTGAGGCAATCTATG
Found at i:34785623 original size:28 final size:28
Alignment explanation
Indices: 34785553--34785629 Score: 81
Period size: 27 Copynumber: 2.8 Consensus size: 28
34785543 CAATCTATGG
34785553 AAAGG-AATGCCTTTGTGGC--ACATTCT
1 AAAGGAAATG-CTTTGTGGCAAACATTCT
** *
34785579 AAAGGAAGGGCCTTGTGGCAAACA-TCT
1 AAAGGAAATGCTTTGTGGCAAACATTCT
34785606 AAAGGAAATGCTTTTGTGGCAAAC
1 AAAGGAAATGC-TTTGTGGCAAAC
34785630 CCTGGAACAA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
26 13 0.32
27 14 0.34
28 14 0.34
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (28 bp):
AAAGGAAATGCTTTGTGGCAAACATTCT
Found at i:34785742 original size:27 final size:27
Alignment explanation
Indices: 34785712--34785775 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
34785702 TGGCTAACTC
* * *
34785712 TGAAGGACTGGAAGGTATGGTAAACAT
1 TGAAGGAATAGAAGGTATGGCAAACAT
* * *
34785739 TGAAGGAATAGTATGTATGGCGAACAT
1 TGAAGGAATAGAAGGTATGGCAAACAT
34785766 TGAAGGAATA
1 TGAAGGAATA
34785776 TTACATATGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.39, C:0.06, G:0.31, T:0.23
Consensus pattern (27 bp):
TGAAGGAATAGAAGGTATGGCAAACAT
Found at i:34785784 original size:27 final size:27
Alignment explanation
Indices: 34785734--34785804 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
34785724 AGGTATGGTA
** *
34785734 AACATTGAAGGAATAGTATGTATGGCG
1 AACATTGAAGGAATAGTACATATGGAG
*
34785761 AACATTGAAGGAATATTACATATGGAG
1 AACATTGAAGGAATAGTACATATGGAG
* *
34785788 AACTTTAAAGGAATAGT
1 AACATTGAAGGAATAGT
34785805 GCGTATGGCA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.42, C:0.07, G:0.24, T:0.27
Consensus pattern (27 bp):
AACATTGAAGGAATAGTACATATGGAG
Found at i:34785811 original size:27 final size:27
Alignment explanation
Indices: 34785726--34785812 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
34785716 GGACTGGAAG
* *
34785726 GTATGGTA-AACATTGAAGGAATAGTAT
1 GTATGG-AGAACATTAAAGGAATAGTAC
* * *
34785753 GTATGGCGAACATTGAAGGAATATTAC
1 GTATGGAGAACATTAAAGGAATAGTAC
* * *
34785780 ATATGGAGAACTTTAAAGGAATAGTGC
1 GTATGGAGAACATTAAAGGAATAGTAC
34785807 GTATGG
1 GTATGG
34785813 CAAACACTAA
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.38, C:0.07, G:0.28, T:0.28
Consensus pattern (27 bp):
GTATGGAGAACATTAAAGGAATAGTAC
Found at i:34788041 original size:50 final size:50
Alignment explanation
Indices: 34787978--34788108 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 50
34787968 CTATACTACT
* * **
34787978 AATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCC
* ** *
34788028 CATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCC
*
34788078 AACGCCATGTCCCAGACATGGTCTTACATGG
1 AATGCCATGTCCCAGACATGGTCTTACATGG
34788109 AATCTCATTC
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
AATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCC
Found at i:34795362 original size:20 final size:20
Alignment explanation
Indices: 34795337--34795375 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
34795327 TACTTTCTTC
34795337 TTTACTTACTCTCTTACTTG
1 TTTACTTACTCTCTTACTTG
*
34795357 TTTACTTACTTTCTTACTT
1 TTTACTTACTCTCTTACTT
34795376 AAATAACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.23, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTACTTACTCTCTTACTTG
Found at i:34795706 original size:50 final size:50
Alignment explanation
Indices: 34795629--34795817 Score: 189
Period size: 50 Copynumber: 3.7 Consensus size: 50
34795619 TCCTGTGCTA
* * * * **
34795629 CCAATGCCATATCCCATATATGATCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* ** *
34795679 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* **
34795729 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATAATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GGTG
* *
34795785 CCAATGCCATGTCCCTGACATGGTCTTAGATGG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGG
34795818 TATCTCATTC
Statistics
Matches: 113, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
50 79 0.70
53 2 0.02
56 32 0.28
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
Found at i:34796365 original size:20 final size:20
Alignment explanation
Indices: 34796340--34796378 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
34796330 AACTAAAATT
34796340 TTTAATTTTATCTAATTTTA
1 TTTAATTTTATCTAATTTTA
34796360 TTTAATTTTATCTAATTTT
1 TTTAATTTTATCTAATTTT
34796379 TATAAATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTAATTTTATCTAATTTTA
Found at i:34796381 original size:11 final size:10
Alignment explanation
Indices: 34796342--34796378 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
34796332 CTAAAATTTT
34796342 TAATTTTATC
1 TAATTTTATC
*
34796352 TAATTTTATT
1 TAATTTTATC
34796362 TAATTTTATC
1 TAATTTTATC
34796372 TAATTTT
1 TAATTTT
34796379 TATAAATATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (10 bp):
TAATTTTATC
Found at i:34798623 original size:15 final size:15
Alignment explanation
Indices: 34798603--34798632 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
34798593 GAGTTGAAAG
34798603 TGAAGAAGAAGATGA
1 TGAAGAAGAAGATGA
*
34798618 TGAAGATGAAGATGA
1 TGAAGAAGAAGATGA
34798633 AACTGATCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (15 bp):
TGAAGAAGAAGATGA
Found at i:34799004 original size:43 final size:43
Alignment explanation
Indices: 34798943--34799193 Score: 319
Period size: 43 Copynumber: 5.9 Consensus size: 43
34798933 GCTTGTAATT
* *
34798943 AAAGCGTCGGTAAAGGTCTTGATCTATAGCGGCGTTTGTGAGA
1 AAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGAGA
* * * *
34798986 AAAGCGCCGCTTAAGGTCTTGATCTATAGTGACGTTTGTGGGA
1 AAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGAGA
* * *
34799029 AAAGCGCCGCTAAAGGTCTTGATCTATAGTGGCGTTTGTGGGG
1 AAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGAGA
* ** *
34799072 AAAGCGCCGCTAAAGATCCCGAGCTATAGCGGCGTTTGTGTAG-
1 AAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTG-AGA
* *
34799115 -AAGCGCCGTTAAAGGTCTTGATCTATAGCAGCGTTTGTTG-GA
1 AAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTG-TGAGA
*
34799157 AAAGCGCCGCTAAAGGTCATGATCTATAGCGGCGTTT
1 AAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTT
34799194 ATTTCTAAAA
Statistics
Matches: 180, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.01
42 31 0.17
43 147 0.82
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGAGA
Found at i:34799152 original size:85 final size:86
Alignment explanation
Indices: 34798943--34799193 Score: 333
Period size: 85 Copynumber: 2.9 Consensus size: 86
34798933 GCTTGTAATT
* * * * *
34798943 AAAGCGTCGGTAAAGGTCTTGATCTATAGCGGCGTTTGTGAGAAAAGCGCCGCTTAAGGTCTTGA
1 AAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGA
* *
34799008 TCTATAGTGACGTTTGTGGGA
66 TCTATAGCGGCGTTTGTGGGA
* * * **
34799029 AAAGCGCCGCTAAAGGTCTTGATCTATAGTGGCGTTTGTGGGGAAAGCGCCGCTAAAGATCCCGA
1 AAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGA
* *
34799094 GCTATAGCGGCGTTTGT-GTA
66 TCTATAGCGGCGTTTGTGGGA
* * * *
34799114 GAAGCGCCGTTAAAGGTCTTGATCTATAGCAGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCATGA
1 AAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGA
34799179 TCTATAGCGGCGTTT
66 TCTATAGCGGCGTTT
34799194 ATTTCTAAAA
Statistics
Matches: 142, Mismatches: 23, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
85 72 0.51
86 70 0.49
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (86 bp):
AAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGA
TCTATAGCGGCGTTTGTGGGA
Found at i:34814621 original size:25 final size:25
Alignment explanation
Indices: 34814580--34814645 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
34814570 GCCATGAGGG
34814580 TTACCGAT-TTCAGCTCGAACGAGC
1 TTACCGATATTCAGCTCGAACGAGC
* * *
34814604 TTACCGATACTCAGCTCGCATGAGC
1 TTACCGATATTCAGCTCGAACGAGC
*
34814629 TTACCGTTATTCAGCTC
1 TTACCGATATTCAGCTC
34814646 AGAGGATCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 8 0.22
25 28 0.78
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (25 bp):
TTACCGATATTCAGCTCGAACGAGC
Found at i:34817993 original size:54 final size:54
Alignment explanation
Indices: 34817911--34818018 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
34817901 TTCATATGTT
* * *
34817911 TGCATGAATTTAGTGTCTAGTAAGAATTTACTTGTTGAGTCCAGTGGATTCGTG
1 TGCATGAATTTAGTGTCTAGTAAGAATTTACCTATTGAGTCCAGTAGATTCGTG
*
34817965 TGCATGAATTTAGTGTCTAGTAAGAATTTACCTATTGAGTCCATTAGATTCGTG
1 TGCATGAATTTAGTGTCTAGTAAGAATTTACCTATTGAGTCCAGTAGATTCGTG
34818019 ATAAATGTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.39
Consensus pattern (54 bp):
TGCATGAATTTAGTGTCTAGTAAGAATTTACCTATTGAGTCCAGTAGATTCGTG
Found at i:34820815 original size:42 final size:42
Alignment explanation
Indices: 34820756--34820835 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 42
34820746 AAAGCAGCTT
34820756 TAGATCGTCAAAAATCATATGCGAATCTTAAACATAAAGATA
1 TAGATCGTCAAAAATCATATGCGAATCTTAAACATAAAGATA
* *
34820798 TAGATCGTTAGAAATCATATGCGAATCTTAAACATAAA
1 TAGATCGTCAAAAATCATATGCGAATCTTAAACATAAA
34820836 CATACAGTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.28
Consensus pattern (42 bp):
TAGATCGTCAAAAATCATATGCGAATCTTAAACATAAAGATA
Found at i:34822291 original size:25 final size:25
Alignment explanation
Indices: 34822237--34822343 Score: 78
Period size: 25 Copynumber: 4.3 Consensus size: 25
34822227 GGTTATCGAT
**
34822237 TTCAGCTCGAACG-AGCTTACCAATA
1 TTCAGCTCGAA-GAAGCTTACCGTTA
* * *
34822262 CTCAGCTCGCATG-AGCTTGCCGTTA
1 TTCAGCTCG-AAGAAGCTTACCGTTA
*
34822287 TTCAGGTCGAAGAAGCTTACCGTTA
1 TTCAGCTCGAAGAAGCTTACCGTTA
* *
34822312 TTCAACTC-AGAGGAGCTTACCGTT-
1 TTCAGCTCGA-AGAAGCTTACCGTTA
*
34822336 TACAGCTC
1 TTCAGCTC
34822344 ATAAGAGCAT
Statistics
Matches: 65, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
24 9 0.14
25 55 0.85
26 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
TTCAGCTCGAAGAAGCTTACCGTTA
Found at i:34822351 original size:24 final size:25
Alignment explanation
Indices: 34822295--34822351 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
34822285 TATTCAGGTC
*
34822295 GAAGAAGCTTACCGTTATTCAACTCA
1 GAAG-AGCTTACCGTTATACAACTCA
* *
34822321 GAGGAGCTTACCGTT-TACAGCTCA
1 GAAGAGCTTACCGTTATACAACTCA
*
34822345 TAAGAGC
1 GAAGAGC
34822352 ATACTGATTC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 12 0.46
25 11 0.42
26 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (25 bp):
GAAGAGCTTACCGTTATACAACTCA
Found at i:34825895 original size:28 final size:29
Alignment explanation
Indices: 34825855--34825930 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
34825845 CCTCGATATG
* * *
34825855 ATGTCAGCTTGTGTGAGCAA-ATTCATAA
1 ATGTCAACTTGTGTGAGCAACATTAACAA
* * *
34825883 ATGTCAACTTGTGTAAGCAACCTTAACCA
1 ATGTCAACTTGTGTGAGCAACATTAACAA
*
34825912 TTGTCAACTTGTGTGAGCA
1 ATGTCAACTTGTGTGAGCA
34825931 GTATAGTCCT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 18 0.46
29 21 0.54
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (29 bp):
ATGTCAACTTGTGTGAGCAACATTAACAA
Found at i:34828092 original size:41 final size:40
Alignment explanation
Indices: 34828047--34828168 Score: 127
Period size: 41 Copynumber: 3.0 Consensus size: 40
34828037 AGTACATCCA
* *
34828047 GGGTACCGAAGTGCAAACAAGGGCATATATGTGCAATTCAG
1 GGGTATCGAAGTACAAACAAGGGCA-ATATGTGCAATTCAG
* * *
34828088 GGGTATCGAAGTACAAACACGGGCAAGCATGTGCATTTCAG
1 GGGTATCGAAGTACAAACAAGGGCAA-TATGTGCAATTCAG
* * * * *
34828129 GCGTATTGAAGTACAAATAGGGGCACGTATGTGCAATTCA
1 GGGTATCGAAGTACAAACAAGGGCA-ATATGTGCAATTCA
34828169 TCTTTATTAT
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
40 1 0.01
41 66 0.99
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (40 bp):
GGGTATCGAAGTACAAACAAGGGCAATATGTGCAATTCAG
Found at i:34832720 original size:39 final size:40
Alignment explanation
Indices: 34832619--34832842 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
34832609 TTGAATGATG
* *
34832619 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
34832658 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
34832699 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
34832738 TCCGGGGTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
34832777 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
34832816 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
34832843 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 74 0.45
40 76 0.47
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:34832767 original size:78 final size:80
Alignment explanation
Indices: 34832619--34832842 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 80
34832609 TTGAATGATG
* * * * *
34832619 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
34832681 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
* * *
34832699 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGGTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATT
*
34832761 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * *
34832777 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
34832842 G
66 G
34832843 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 36 0.29
79 53 0.42
80 35 0.28
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:34832865 original size:79 final size:78
Alignment explanation
Indices: 34832672--34832842 Score: 229
Period size: 78 Copynumber: 2.2 Consensus size: 78
34832662 GGACTAAGAT
* *
34832672 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACTAA-TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
* *
34832736 ATTCCGGGGTAAGC
65 ATACCGGGCTAAGC
* *
34832750 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGTGCGAGATACT-AATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
34832814 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAG-C
34832830 CCGAAGGCATTTG
1 CCGAAGGCATTTG
34832843 AACGAGTAGC
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
78 35 0.43
79 33 0.40
80 14 0.17
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:34832873 original size:79 final size:79
Alignment explanation
Indices: 34832672--34832875 Score: 209
Period size: 79 Copynumber: 2.6 Consensus size: 79
34832662 GGACTAAGAT
** * * * * *
34832672 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
* *
34832736 ATTCCGGGGTAAGC
66 ATACCGGGCTAAGC
** * *
34832750 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
*
34832814 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* *
34832830 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
34832876 TACGTGATTT
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 34 0.32
79 48 0.45
80 25 0.23
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:34840720 original size:39 final size:40
Alignment explanation
Indices: 34840619--34840842 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
34840609 TTGAATGATG
* *
34840619 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
34840658 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
34840699 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
34840738 TCCGGGCTAAG-CCCGAAGGTATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
34840777 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
34840816 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
34840843 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 74 0.46
40 75 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:34840807 original size:79 final size:79
Alignment explanation
Indices: 34840619--34840842 Score: 242
Period size: 79 Copynumber: 2.8 Consensus size: 79
34840609 TTGAATGATG
* * * * *
34840619 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
34840681 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAA
* * *
34840699 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGTATTT
1 TCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTT
*
34840762 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * *
34840777 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
34840842 G
65 G
34840843 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 35 0.28
79 55 0.44
80 34 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:34840865 original size:79 final size:78
Alignment explanation
Indices: 34840672--34840842 Score: 229
Period size: 78 Copynumber: 2.2 Consensus size: 78
34840662 GGACTAAGAT
* *
34840672 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACTAA-TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
34840736 ATTCCGGGCTAAGC
65 ATACCGGGCTAAGC
* * *
34840750 CCGAAGGTATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGTGCGAGATACT-AATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
34840814 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAG-C
34840830 CCGAAGGCATTTG
1 CCGAAGGCATTTG
34840843 AACGAGTAGC
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
78 34 0.42
79 34 0.42
80 13 0.16
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:34840873 original size:79 final size:79
Alignment explanation
Indices: 34840672--34840875 Score: 209
Period size: 79 Copynumber: 2.6 Consensus size: 79
34840662 GGACTAAGAT
** * * * * *
34840672 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
*
34840736 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
* ** * *
34840750 CCGAAGGTATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
*
34840814 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* *
34840830 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
34840876 TACGTGATTT
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
78 33 0.31
79 49 0.46
80 24 0.23
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:34847401 original size:47 final size:47
Alignment explanation
Indices: 34847332--34847425 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
34847322 GCTACTATAG
34847332 CCATACGGATATCATTATTCAACCCATCTTCAAATCTAATACACATT
1 CCATACGGATATCATTATTCAACCCATCTTCAAATCTAATACACATT
*
34847379 CCATACGGATATCATTATTCAACCTATCTTCAAATCTAATACACATT
1 CCATACGGATATCATTATTCAACCCATCTTCAAATCTAATACACATT
34847426 TTTGCCTCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.33
Consensus pattern (47 bp):
CCATACGGATATCATTATTCAACCCATCTTCAAATCTAATACACATT
Found at i:34855455 original size:20 final size:20
Alignment explanation
Indices: 34855432--34855471 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
34855422 CCGTAGTGTG
34855432 AACAGAGACA-TCGAAGTGCA
1 AACAGAGACACT-GAAGTGCA
*
34855452 AACAGAGGCACTGAAGTGCA
1 AACAGAGACACTGAAGTGCA
34855472 GTCCCATACN
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.42, C:0.20, G:0.28, T:0.10
Consensus pattern (20 bp):
AACAGAGACACTGAAGTGCA
Found at i:34867223 original size:40 final size:40
Alignment explanation
Indices: 34867179--34867526 Score: 624
Period size: 40 Copynumber: 8.7 Consensus size: 40
34867169 GCAAACACAT
* *
34867179 TTGCCTTCGGGTCTTAGCCCGAACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34867219 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
34867259 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
34867299 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34867339 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
34867379 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34867419 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
34867459 TTGCCTTCGGGTCCTAGCCCGGATTTATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
34867499 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
34867527 TCCAATGCTC
Statistics
Matches: 297, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 297 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:34870377 original size:53 final size:52
Alignment explanation
Indices: 34870308--34870489 Score: 181
Period size: 54 Copynumber: 3.4 Consensus size: 52
34870298 TGTGATTCAT
* * * * **
34870308 GGTAAAATAACCGAAATGCCCTCGATAGGTAAAATGATAAAAATACCCCTGAG
1 GGTAAAATGACTGAAATACCCTC-AAAGGTAAAATGACCAAAATACCCCTGAG
*
34870361 GGTAAAATGACTGAAATACCCTCAAACGGTAAAATGACCAAAATA-CCTTCGAAG
1 GGTAAAATGACTGAAATACCCTCAAA-GGTAAAATGACCAAAATACCCCT-G-AG
* *
34870415 GGTAAAATGA-TCAAAATACCCTCAAAAGGTAAAATGACCGAAATACCCCCAT-AG
1 GGTAAAATGACT-GAAATACCCTC-AAAGGTAAAATGACCAAAATA-CCCC-TGAG
*
34870469 GGTAAAATGACTGATATACCC
1 GGTAAAATGACTGAAATACCC
34870490 CTAGGAATTG
Statistics
Matches: 108, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
52 5 0.05
53 38 0.35
54 58 0.54
55 4 0.04
56 2 0.02
57 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.19
Consensus pattern (52 bp):
GGTAAAATGACTGAAATACCCTCAAAGGTAAAATGACCAAAATACCCCTGAG
Found at i:34870472 original size:27 final size:27
Alignment explanation
Indices: 34870308--34870490 Score: 131
Period size: 27 Copynumber: 6.8 Consensus size: 27
34870298 TGTGATTCAT
* * *
34870308 GGTAAAATAACCGAAATGCCCTCGATA-
1 GGTAAAATGACCGAAATACCC-CCATAG
***
34870335 GGTAAAATGATAAAAATA-CCCC-TGAG
1 GGTAAAATGACCGAAATACCCCCAT-AG
* * * *
34870361 GGTAAAATGACTGAAATACCCTCAAAC
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
34870388 GGTAAAATGACCAAAATACCTTCGA-AG
1 GGTAAAATGACCGAAATACC-CCCATAG
* * * * *
34870415 GGTAAAATGATCAAAATACCCTCAAAA
1 GGTAAAATGACCGAAATACCCCCATAG
34870442 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
34870469 GGTAAAATGACTGATATACCCC
1 GGTAAAATGACCGAAATACCCC
34870491 TAGGAATTGA
Statistics
Matches: 120, Mismatches: 30, Indels: 12
0.74 0.19 0.07
Matches are distributed among these distances:
24 1 0.01
25 2 0.02
26 18 0.15
27 98 0.82
28 1 0.01
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAG
Found at i:34870488 original size:81 final size:80
Alignment explanation
Indices: 34870308--34870479 Score: 211
Period size: 80 Copynumber: 2.1 Consensus size: 80
34870298 TGTGATTCAT
* * * * ** *
34870308 GGTAAAATAACCGAAATGCCCTCGATA-GGTAAAATGATAAAAATACCCCTGAGGGTAAAATGAC
1 GGTAAAATGACCAAAATACCTTCGA-AGGGTAAAATGATAAAAATACCCCAAAAGGTAAAATGAC
* *
34870372 TGAAATACCCTCAAAC
65 CGAAATACCCCCAAAC
*
34870388 GGTAAAATGACCAAAATACCTTCGAAGGGTAAAATGATCAAAATACCCTCAAAAGGTAAAATGAC
1 GGTAAAATGACCAAAATACCTTCGAAGGGTAAAATGATAAAAATACCC-CAAAAGGTAAAATGAC
* *
34870453 CGAAATACCCCCATAG
65 CGAAATACCCCCAAAC
34870469 GGTAAAATGAC
1 GGTAAAATGAC
34870480 TGATATACCC
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 41 0.53
81 36 0.46
ACGTcount: A:0.45, C:0.20, G:0.17, T:0.18
Consensus pattern (80 bp):
GGTAAAATGACCAAAATACCTTCGAAGGGTAAAATGATAAAAATACCCCAAAAGGTAAAATGACC
GAAATACCCCCAAAC
Found at i:34870723 original size:26 final size:26
Alignment explanation
Indices: 34870659--34870730 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
34870649 ACAAAGAGTG
* *
34870659 TTACTGGCAGCTCTGCTGCGTTACTA
1 TTACTGGCAGCTTTGCTGCGTCACTA
*
34870685 TTACTGGCAGCTTTGCTGTGTCACTA
1 TTACTGGCAGCTTTGCTGCGTCACTA
* *
34870711 TTATTGGCAGCTTTACTGCG
1 TTACTGGCAGCTTTGCTGCG
34870731 ATATTGGTGT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.38
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGCGTCACTA
Found at i:34870878 original size:28 final size:28
Alignment explanation
Indices: 34870836--34870925 Score: 101
Period size: 28 Copynumber: 3.1 Consensus size: 28
34870826 ACGACATTGT
*
34870836 ACTGATTACTATATTGGGCTAAGGACCAC
1 ACTG-TTACTGTATTGGGCTAAGGACCAC
34870865 ACTGTTACTGTATTGGGCTAA-GACCCACAC
1 ACTGTTACTGTATTGGGCTAAGGA--C-CAC
* * *
34870895 ACTATTACTGTAATGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGACCAC
34870923 ACT
1 ACT
34870926 ACACTGATAC
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
27 2 0.04
28 22 0.42
29 6 0.11
30 22 0.42
31 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGACCAC
Found at i:34870903 original size:30 final size:30
Alignment explanation
Indices: 34870840--34870924 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 30
34870830 CATTGTACTG
*
34870840 ATTACTATATTGGGCTAAGGA--C-CACACT
1 ATTACTGTATTGGGCTAA-GACCCACACACT
*
34870868 GTTACTGTATTGGGCTAAGACCCACACACT
1 ATTACTGTATTGGGCTAAGACCCACACACT
* *
34870898 ATTACTGTAATGGGCTAAGGCCCACAC
1 ATTACTGTATTGGGCTAAGACCCACAC
34870925 TACACTGATA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.04
28 16 0.33
29 1 0.02
30 30 0.61
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (30 bp):
ATTACTGTATTGGGCTAAGACCCACACACT
Found at i:34871172 original size:26 final size:26
Alignment explanation
Indices: 34871130--34871196 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
34871120 TCTGCTTTTA
*
34871130 TTGTATTTT-TAACAATAAGTTGGGTT
1 TTGT-TTTTGTAATAATAAGTTGGGTT
34871156 TTGTTTTTGTAATAATAAGTTGGGTT
1 TTGTTTTTGTAATAATAAGTTGGGTT
34871182 TTGTTTTTGTAATAA
1 TTGTTTTTGTAATAA
34871197 GGCCTTTAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
25 4 0.10
26 35 0.90
ACGTcount: A:0.25, C:0.01, G:0.19, T:0.54
Consensus pattern (26 bp):
TTGTTTTTGTAATAATAAGTTGGGTT
Found at i:34874165 original size:50 final size:50
Alignment explanation
Indices: 34873977--34874223 Score: 185
Period size: 50 Copynumber: 4.8 Consensus size: 50
34873967 GATAATAACA
* ** * * *
34873977 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * * ** *
34874026 TGCCAATGTCATATCCCAGATATGGCCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
34874076 TGCCCATGCCATGTCTCAAACATGGTCTTA-AGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA-TGGGACCTCTCATCTCGG
* * * *
34874126 TGCCAACGCCATGTCCCAGACATGGTCTTATATGAGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GG
* * *
34874182 AGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
34874224 TTACCCAAAT
Statistics
Matches: 156, Mismatches: 32, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
48 1 0.01
49 38 0.24
50 72 0.46
51 1 0.01
53 5 0.03
56 39 0.25
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:34876273 original size:22 final size:22
Alignment explanation
Indices: 34876248--34876290 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
34876238 GCAATTATCC
34876248 AACATTCAGACAACATTTAATT
1 AACATTCAGACAACATTTAATT
** *
34876270 AACATTTGGATAACATTTAAT
1 AACATTCAGACAACATTTAAT
34876291 CAAAAATTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (22 bp):
AACATTCAGACAACATTTAATT
Found at i:34876300 original size:22 final size:22
Alignment explanation
Indices: 34876256--34876639 Score: 406
Period size: 22 Copynumber: 17.7 Consensus size: 22
34876246 CCAACATTCA
* *
34876256 GACAACATTTAATTAACATTTG
1 GACAACATTTAATCAACAATTG
* *
34876278 GATAACATTTAATCAAAAATTG
1 GACAACATTTAATCAACAATTG
* * * *
34876300 GACAGCAATCAATCAA-AATTTT
1 GACAACATTTAATCAACAA-TTG
* *
34876322 GA-AAGAATTTAATCAAGAATTG
1 GACAA-CATTTAATCAACAATTG
* *
34876344 GACAACATTAAATCAACATTTG
1 GACAACATTTAATCAACAATTG
*
34876366 GACAACATTTAATCAACAATTA
1 GACAACATTTAATCAACAATTG
* * * *
34876388 GACAACAGTCAATCAATATTTG
1 GACAACATTTAATCAACAATTG
*
34876410 GACAACATTTAATCAATAATTG
1 GACAACATTTAATCAACAATTG
* *
34876432 GACAACATTAAATCAACATTTG
1 GACAACATTTAATCAACAATTG
34876454 G-----ATTTAATCAACAATTG
1 GACAACATTTAATCAACAATTG
* *
34876471 GACAACATTAAATCAACATTTG
1 GACAACATTTAATCAACAATTG
34876493 GACAACATTT-ATCAACAATTG
1 GACAACATTTAATCAACAATTG
* * * *
34876514 GGCAACATTCAATCAATATTTG
1 GACAACATTTAATCAACAATTG
34876536 GACAACATTTAATCAACAATTG
1 GACAACATTTAATCAACAATTG
* *
34876558 GACAACATTAAATCAACATTTG
1 GACAACATTTAATCAACAATTG
*
34876580 AACAACATTTAATCAACAATTG
1 GACAACATTTAATCAACAATTG
* * *
34876602 GACAACATTCAATCAATATTTG
1 GACAACATTTAATCAACAATTG
34876624 GACAACATTTAATCAA
1 GACAACATTTAATCAA
34876640 AAAAATTTAA
Statistics
Matches: 296, Mismatches: 56, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
17 15 0.05
21 21 0.07
22 256 0.86
23 4 0.01
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.29
Consensus pattern (22 bp):
GACAACATTTAATCAACAATTG
Found at i:34876347 original size:44 final size:44
Alignment explanation
Indices: 34876256--34876639 Score: 512
Period size: 44 Copynumber: 8.9 Consensus size: 44
34876246 CCAACATTCA
* * * *
34876256 GACAACATTTAATTAACATTTGGATAACATTTAATCAAAAATTG
1 GACAACATTAAATCAACATTTGGACAACATTTAATCAACAATTG
* * * * * * *
34876300 GACAGCAATCAATCAAAATTTTGA-AAGAATTTAATCAAGAATTG
1 GACAACATTAAATCAACATTTGGACAA-CATTTAATCAACAATTG
*
34876344 GACAACATTAAATCAACATTTGGACAACATTTAATCAACAATTA
1 GACAACATTAAATCAACATTTGGACAACATTTAATCAACAATTG
* * * *
34876388 GACAACAGTCAATCAATATTTGGACAACATTTAATCAATAATTG
1 GACAACATTAAATCAACATTTGGACAACATTTAATCAACAATTG
34876432 GACAACATTAAATCAACATTTGG-----ATTTAATCAACAATTG
1 GACAACATTAAATCAACATTTGGACAACATTTAATCAACAATTG
34876471 GACAACATTAAATCAACATTTGGACAACATTT-ATCAACAATTG
1 GACAACATTAAATCAACATTTGGACAACATTTAATCAACAATTG
* * *
34876514 GGCAACATTCAATCAATATTTGGACAACATTTAATCAACAATTG
1 GACAACATTAAATCAACATTTGGACAACATTTAATCAACAATTG
*
34876558 GACAACATTAAATCAACATTTGAACAACATTTAATCAACAATTG
1 GACAACATTAAATCAACATTTGGACAACATTTAATCAACAATTG
* *
34876602 GACAACATTCAATCAATATTTGGACAACATTTAATCAA
1 GACAACATTAAATCAACATTTGGACAACATTTAATCAA
34876640 AAAAATTTAA
Statistics
Matches: 297, Mismatches: 35, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
39 38 0.13
43 42 0.14
44 215 0.72
45 2 0.01
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.29
Consensus pattern (44 bp):
GACAACATTAAATCAACATTTGGACAACATTTAATCAACAATTG
Found at i:34876382 original size:11 final size:11
Alignment explanation
Indices: 34876346--34876639 Score: 82
Period size: 11 Copynumber: 27.3 Consensus size: 11
34876336 AAGAATTGGA
*
34876346 CAACATTAAAT
1 CAACATTTAAT
*
34876357 CAACATTTGGA-
1 CAACATTT-AAT
34876368 CAACATTTAAT
1 CAACATTTAAT
*
34876379 CAACAATTAGA-
1 CAACATTTA-AT
* *
34876390 CAACAGTCAAT
1 CAACATTTAAT
* *
34876401 CAATATTTGGA-
1 CAACATTT-AAT
34876412 CAACATTTAAT
1 CAACATTTAAT
* **
34876423 CAATAATTGGA-
1 CAA-CATTTAAT
*
34876434 CAACATTAAAT
1 CAACATTTAAT
34876445 CAACA-TT--T
1 CAACATTTAAT
**
34876453 --GGATTTAAT
1 CAACATTTAAT
**
34876462 CAACAATTGGA-
1 CAAC-ATTTAAT
*
34876473 CAACATTAAAT
1 CAACATTTAAT
*
34876484 CAACATTTGGA-
1 CAACATTT-AAT
34876495 CAACATTT-AT
1 CAACATTTAAT
* ***
34876505 CAACAATTGGG
1 CAACATTTAAT
*
34876516 CAACATTCAAT
1 CAACATTTAAT
* *
34876527 CAATATTTGGA-
1 CAACATTT-AAT
34876538 CAACATTTAAT
1 CAACATTTAAT
**
34876549 CAACAATTGGA-
1 CAAC-ATTTAAT
*
34876560 CAACATTAAAT
1 CAACATTTAAT
34876571 CAACATTTGAA-
1 CAACATTT-AAT
34876582 CAACATTTAAT
1 CAACATTTAAT
**
34876593 CAACAATTGGA-
1 CAAC-ATTTAAT
*
34876604 CAACATTCAAT
1 CAACATTTAAT
* *
34876615 CAATATTTGGA-
1 CAACATTT-AAT
34876626 CAACATTTAAT
1 CAACATTTAAT
34876637 CAA
1 CAA
34876640 AAAAATTTAA
Statistics
Matches: 199, Mismatches: 56, Indels: 56
0.64 0.18 0.18
Matches are distributed among these distances:
6 1 0.01
7 2 0.01
8 1 0.01
9 2 0.01
10 31 0.16
11 138 0.69
12 24 0.12
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.29
Consensus pattern (11 bp):
CAACATTTAAT
Found at i:34876543 original size:170 final size:171
Alignment explanation
Indices: 34876284--34876625 Score: 490
Period size: 170 Copynumber: 2.0 Consensus size: 171
34876274 TTTGGATAAC
* * * *
34876284 ATTTAATCAAAAATTGGACAGCAATCAATCAAAATTTTGAAAGAATTTAATCAAGAATTGGACAA
1 ATTTAATCAAAAATTGGACAACAATAAATCAAAATTTGGAAAGAATTTAATCAACAATTGGACAA
* * *
34876349 CATTAAATCAACATTTGGACAACATTTAATCAACAATTAGACAACAGTCAATCAATATTTGGACA
66 CATTAAATCAACATTTGGACAACATTTAATCAACAATTAGACAACAGTAAATCAACATTTGAACA
*
34876414 ACATTTAATCAATAATTGGACAACATTAAATCAACATTTGG
131 ACATTTAATCAACAATTGGACAACATTAAATCAACATTTGG
* * * * *
34876455 ATTTAATCAACAATTGGACAACATTAAATCAACATTTGGACAA-CATTT-ATCAACAATTGGGCA
1 ATTTAATCAAAAATTGGACAACAATAAATCAAAATTTGGA-AAGAATTTAATCAACAATTGGACA
* * * *
34876518 ACATTCAATCAATATTTGGACAACATTTAATCAACAATTGGACAACATTAAATCAACATTTGAAC
65 ACATTAAATCAACATTTGGACAACATTTAATCAACAATTAGACAACAGTAAATCAACATTTGAAC
* *
34876583 AACATTTAATCAACAATTGGACAACATTCAATCAATATTTGG
130 AACATTTAATCAACAATTGGACAACATTAAATCAACATTTGG
34876625 A
1 A
34876626 CAACATTTAA
Statistics
Matches: 151, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
170 111 0.74
171 38 0.25
172 2 0.01
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.29
Consensus pattern (171 bp):
ATTTAATCAAAAATTGGACAACAATAAATCAAAATTTGGAAAGAATTTAATCAACAATTGGACAA
CATTAAATCAACATTTGGACAACATTTAATCAACAATTAGACAACAGTAAATCAACATTTGAACA
ACATTTAATCAACAATTGGACAACATTAAATCAACATTTGG
Found at i:34877526 original size:42 final size:42
Alignment explanation
Indices: 34877430--34877578 Score: 181
Period size: 43 Copynumber: 3.5 Consensus size: 42
34877420 GCCAACATCC
* * * * * *
34877430 CAGACGTGGTCTTTCATGTAATCAAAAAACGATGCCAATGTCT
1 CAGACATGGTCTTACACGTAATC-ATATACGACGCCAATGTCT
* *
34877473 CAGACAAGGTCTTACACGTAATCATATACGACGCCAATGTCC
1 CAGACATGGTCTTACACGTAATCATATACGACGCCAATGTCT
* * *
34877515 CAAACATGGTCTTACATGTAAATCATATACGACGCCAATATCT
1 CAGACATGGTCTTACACGT-AATCATATACGACGCCAATGTCT
34877558 CAGACATGGTCTTACACGTAA
1 CAGACATGGTCTTACACGTAA
34877579 ATCTCAAATC
Statistics
Matches: 90, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 33 0.37
43 57 0.63
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (42 bp):
CAGACATGGTCTTACACGTAATCATATACGACGCCAATGTCT
Found at i:34877579 original size:43 final size:43
Alignment explanation
Indices: 34877458--34877581 Score: 187
Period size: 43 Copynumber: 2.9 Consensus size: 43
34877448 TAATCAAAAA
* *
34877458 ACGATGCCAATGTCTCAGACAAGGTCTTACACGT-AATCATAT
1 ACGACGCCAATGTCTCAGACATGGTCTTACACGTAAATCATAT
* * *
34877500 ACGACGCCAATGTCCCAAACATGGTCTTACATGTAAATCATAT
1 ACGACGCCAATGTCTCAGACATGGTCTTACACGTAAATCATAT
*
34877543 ACGACGCCAATATCTCAGACATGGTCTTACACGTAAATC
1 ACGACGCCAATGTCTCAGACATGGTCTTACACGTAAATC
34877582 TCAAATCGGG
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 29 0.40
43 43 0.60
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
ACGACGCCAATGTCTCAGACATGGTCTTACACGTAAATCATAT
Found at i:34879588 original size:42 final size:43
Alignment explanation
Indices: 34879505--34879590 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 43
34879495 TGTTATCCTA
* * *
34879505 GAAAAAATAATTTAAAAGGAGAAGAAGATAATCTTGGGTTGTT
1 GAAAAAATAATTTAAAAGAAGAAGAAGATAAACTTGCGTTGTT
* *
34879548 GAAAAAATAATTTAAAA-AAGGAGAAGCTAAACTTGCGTTGTT
1 GAAAAAATAATTTAAAAGAAGAAGAAGATAAACTTGCGTTGTT
34879590 G
1 G
34879591 GATTTACCCT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
42 21 0.55
43 17 0.45
ACGTcount: A:0.47, C:0.05, G:0.22, T:0.27
Consensus pattern (43 bp):
GAAAAAATAATTTAAAAGAAGAAGAAGATAAACTTGCGTTGTT
Done.