Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 128 of 230
Found at i:37279228 original size:9 final size:9
Alignment explanation
Indices: 37279214--37279240 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
37279204 TATTTGTTAT
37279214 TTAAGTTTA
1 TTAAGTTTA
37279223 TTAAGTTTA
1 TTAAGTTTA
37279232 TTAAGTTTA
1 TTAAGTTTA
37279241 GTTTAGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (9 bp):
TTAAGTTTA
Found at i:37279286 original size:33 final size:34
Alignment explanation
Indices: 37279231--37279305 Score: 125
Period size: 33 Copynumber: 2.2 Consensus size: 34
37279221 TATTAAGTTT
* *
37279231 ATTAAGTTTAGTTTAGCTCAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
37279265 ATTAATTTTA-TTCAGCTCAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
37279298 ATTAATTT
1 ATTAATTT
37279306 GTTTAAATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 30 0.77
34 9 0.23
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.44
Consensus pattern (34 bp):
ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
Found at i:37282054 original size:19 final size:20
Alignment explanation
Indices: 37282020--37282059 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
37282010 TGTAAGCTGA
*
37282020 CTTTAGTTCGATTTTAGCTC
1 CTTTAGCTCGATTTTAGCTC
37282040 CTTTAGCTC-ATTTTAGCTC
1 CTTTAGCTCGATTTTAGCTC
37282059 C
1 C
37282060 AACAAATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.15, C:0.25, G:0.12, T:0.47
Consensus pattern (20 bp):
CTTTAGCTCGATTTTAGCTC
Found at i:37282385 original size:20 final size:20
Alignment explanation
Indices: 37282362--37282407 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
37282352 CCAGCTCGAA
*
37282362 TTAGCTCACATGAGCTTAAT
1 TTAGCTCACATGAGCTCAAT
***
37282382 TTAGCTCGTTTGAGCTCAAT
1 TTAGCTCACATGAGCTCAAT
37282402 TTAGCT
1 TTAGCT
37282408 TACTTTAGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (20 bp):
TTAGCTCACATGAGCTCAAT
Found at i:37282388 original size:30 final size:30
Alignment explanation
Indices: 37282354--37282427 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
37282344 AGCTTTTCCC
37282354 AGCTCGAATT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-ATTGAGCTCA-ATTGAGCTTAATTT
* * *
37282384 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGATTGAGCTCAATTGAGCTTAATTT
*
37282414 AGCTCGTTTGAGCT
1 AGCTCGATTGAGCT
37282428 TGGCTTAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 3 0.08
30 36 0.92
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (30 bp):
AGCTCGATTGAGCTCAATTGAGCTTAATTT
Found at i:37285097 original size:11 final size:12
Alignment explanation
Indices: 37285081--37285199 Score: 66
Period size: 12 Copynumber: 9.6 Consensus size: 12
37285071 AAAGAAATTG
37285081 AAAGAAAAC-AA
1 AAAGAAAACGAA
37285092 AAAGAAAACGAA
1 AAAGAAAACGAA
*
37285104 GAAGAAAA-GAA
1 AAAGAAAACGAA
**
37285115 ATTGCAAAA-GAA
1 AAAG-AAAACGAA
*
37285127 AAAGAAATCGAA
1 AAAGAAAACGAA
* *
37285139 AAAGTGAGA-GAA
1 AAAG-AAAACGAA
*
37285151 AAAGAAAATGAAGA
1 AAAGAAAACG-A-A
*
37285165 AAAGAAAATTGAA
1 AAAGAAAA-CGAA
37285178 AAAGAAAAAGCGAAA
1 AAAG-AAAA-CG-AA
37285193 AAAGAAA
1 AAAGAAA
37285200 TTGAAAGAGA
Statistics
Matches: 84, Mismatches: 14, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
11 18 0.21
12 33 0.39
13 7 0.08
14 18 0.21
15 8 0.10
ACGTcount: A:0.71, C:0.04, G:0.19, T:0.06
Consensus pattern (12 bp):
AAAGAAAACGAA
Found at i:37285130 original size:56 final size:55
Alignment explanation
Indices: 37285068--37285187 Score: 136
Period size: 57 Copynumber: 2.1 Consensus size: 55
37285058 GAAAGAGATT
* *
37285068 GAAAAAGAAATTGAAAGAA-A-ACAAAAAGAAAACGAAGAAGAAAAGAAATTGCAAAA
1 GAAAAAGAAATCGAAA-AAGAGACAAAAAGAAAACGAAGAA-AAAA-AAATTGAAAAA
* * *
37285124 GAAAAAGAAATCGAAAAAGTGAGAGAAAAAGAAAATGAAGAAAAGAAAATTGAAAAA
1 GAAAAAGAAATCGAAAAA--GAGACAAAAAGAAAACGAAGAAAAAAAAATTGAAAAA
37285181 GAAAAAG
1 GAAAAAG
37285188 CGAAAAAAGA
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
55 2 0.04
56 15 0.27
57 17 0.31
58 4 0.07
59 17 0.31
ACGTcount: A:0.69, C:0.03, G:0.20, T:0.07
Consensus pattern (55 bp):
GAAAAAGAAATCGAAAAAGAGACAAAAAGAAAACGAAGAAAAAAAAATTGAAAAA
Found at i:37285131 original size:6 final size:6
Alignment explanation
Indices: 37285081--37285187 Score: 56
Period size: 6 Copynumber: 17.7 Consensus size: 6
37285071 AAAGAAATTG
* * * ** *
37285081 AAAG-A AAACAA AAAGAA AACGAA GAAG-A AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
37285127 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
37285178 AAAGAA AAAG
1 AAAGAA AAAG
37285188 CGAAAAAAGA
Statistics
Matches: 71, Mismatches: 26, Indels: 9
0.67 0.25 0.08
Matches are distributed among these distances:
5 7 0.10
6 53 0.75
7 7 0.10
8 4 0.06
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (6 bp):
AAAGAA
Found at i:37285140 original size:17 final size:17
Alignment explanation
Indices: 37285084--37285140 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
37285074 GAAATTGAAA
* *
37285084 GAAAACAAAAAGAAAAC
1 GAAAAGAAAAAGAAATC
*
37285101 GAAGAAG-AAAAGAAATT
1 GAA-AAGAAAAAGAAATC
37285118 GCAAAAGAAAAAGAAATC
1 G-AAAAGAAAAAGAAATC
37285136 GAAAA
1 GAAAA
37285141 AGTGAGAGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
17 19 0.58
18 14 0.42
ACGTcount: A:0.70, C:0.07, G:0.18, T:0.05
Consensus pattern (17 bp):
GAAAAGAAAAAGAAATC
Found at i:37285169 original size:14 final size:13
Alignment explanation
Indices: 37285148--37285185 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
37285138 AAAAGTGAGA
37285148 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
37285160 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
37285175 GAAAAAGAAAA
1 GAAAAAGAAAA
37285186 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:37285182 original size:13 final size:12
Alignment explanation
Indices: 37285067--37285185 Score: 63
Period size: 12 Copynumber: 10.0 Consensus size: 12
37285057 AGAAAGAGAT
*
37285067 TGAAAAAGAAAT
1 TGAAAAAGAAAA
37285079 TG--AAAGAAAA
1 TGAAAAAGAAAA
*
37285089 -CAAAAAGAAAA
1 TGAAAAAGAAAA
* *
37285100 CGAAGAAGAAAA
1 TGAAAAAGAAAA
**
37285112 -GAAATTGCAAAA
1 TGAAAAAG-AAAA
37285124 -GAAAAAG-AAA
1 TGAAAAAGAAAA
* *
37285134 TCGAAAAAGTGAGA
1 T-GAAAAAG-AAAA
37285148 -GAAAAAGAAAA
1 TGAAAAAGAAAA
37285159 TGAAGAAAAGAAAA
1 TG-A-AAAAGAAAA
37285173 TTGAAAAAGAAAA
1 -TGAAAAAGAAAA
37285186 AGCGAAAAAA
Statistics
Matches: 83, Mismatches: 12, Indels: 23
0.70 0.10 0.19
Matches are distributed among these distances:
10 10 0.12
11 14 0.17
12 35 0.42
13 10 0.12
14 12 0.14
15 2 0.02
ACGTcount: A:0.69, C:0.03, G:0.19, T:0.08
Consensus pattern (12 bp):
TGAAAAAGAAAA
Found at i:37285199 original size:21 final size:21
Alignment explanation
Indices: 37285149--37285199 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
37285139 AAAGTGAGAG
*
37285149 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
37285170 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
37285191 AAAAAGAAA
1 AAAAAGAAA
37285200 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:37287072 original size:20 final size:20
Alignment explanation
Indices: 37287049--37287094 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
37287039 CCAGCTCGAA
*
37287049 TTAGCTCACATGAGCTTAAT
1 TTAGCTCACATGAGCTCAAT
***
37287069 TTAGCTCGTTTGAGCTCAAT
1 TTAGCTCACATGAGCTCAAT
37287089 TTAGCT
1 TTAGCT
37287095 TACTTTAGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (20 bp):
TTAGCTCACATGAGCTCAAT
Found at i:37287076 original size:30 final size:30
Alignment explanation
Indices: 37287041--37287114 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
37287031 AGTTTTTCCC
37287041 AGCTCGAATT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-ATTGAGCTCA-ATTGAGCTTAATTT
* * *
37287071 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGATTGAGCTCAATTGAGCTTAATTT
*
37287101 AGCTCGTTTGAGCT
1 AGCTCGATTGAGCT
37287115 TGGCTTAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 3 0.08
30 36 0.92
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (30 bp):
AGCTCGATTGAGCTCAATTGAGCTTAATTT
Found at i:37289413 original size:24 final size:24
Alignment explanation
Indices: 37289389--37289435 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
37289379 AAACTACTTC
37289389 TAAAAAAAACTCAAGAGAGAATTCT
1 TAAAAAAAACTCAA-AGAGAATTCT
** *
37289414 TGGAGAAAACTCAAAGAGAATT
1 TAAAAAAAACTCAAAGAGAATT
37289436 TTTCACTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (24 bp):
TAAAAAAAACTCAAAGAGAATTCT
Found at i:37297080 original size:13 final size:13
Alignment explanation
Indices: 37297062--37297105 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
37297052 TAGTTTCTTC
37297062 AAAAAAAATTC-A
1 AAAAAAAATTCAA
37297074 AAAAAAAATTCAA
1 AAAAAAAATTCAA
*
37297087 TAAAAAAATTCAA
1 AAAAAAAATTCAA
37297100 AAAAAA
1 AAAAAA
37297106 TGGTTTCCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
12 11 0.38
13 18 0.62
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAAAAATTCAA
Found at i:37297106 original size:11 final size:12
Alignment explanation
Indices: 37297062--37297105 Score: 79
Period size: 12 Copynumber: 3.6 Consensus size: 12
37297052 TAGTTTCTTC
37297062 AAAAAAAATTCA
1 AAAAAAAATTCA
37297074 AAAAAAAATTCA
1 AAAAAAAATTCA
37297086 ATAAAAAAATTCA
1 A-AAAAAAATTCA
37297099 AAAAAAA
1 AAAAAAA
37297106 TGGTTTCCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 19 0.61
13 12 0.39
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:37297166 original size:16 final size:17
Alignment explanation
Indices: 37297145--37297181 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
37297135 TATCAAGTTG
37297145 AAAAAAAA-TTCGTGAA
1 AAAAAAAATTTCGTGAA
37297161 AAAAAAAATTTCGTGAA
1 AAAAAAAATTTCGTGAA
37297178 AAAA
1 AAAA
37297182 GAAGAAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.65, C:0.05, G:0.11, T:0.19
Consensus pattern (17 bp):
AAAAAAAATTTCGTGAA
Found at i:37307849 original size:20 final size:19
Alignment explanation
Indices: 37307819--37307883 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 19
37307809 GCAACTAAAA
37307819 TGAGCTAAAATGAGCTAAG
1 TGAGCTAAAATGAGCTAAG
*
37307838 TGAGCTAGAAATGAGCT-CG
1 TGAGCTA-AAATGAGCTAAG
37307857 TTGAGCTAAAATTGAGCTGAA-
1 -TGAGCTAAAA-TGAGCT-AAG
37307878 TGAGCT
1 TGAGCT
37307884 TGAAGGCAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
19 11 0.28
20 28 0.72
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (19 bp):
TGAGCTAAAATGAGCTAAG
Found at i:37307874 original size:11 final size:10
Alignment explanation
Indices: 37307813--37307854 Score: 59
Period size: 10 Copynumber: 4.2 Consensus size: 10
37307803 TTAATTGCAA
37307813 CTAAAATGAG
1 CTAAAATGAG
37307823 CTAAAATGAG
1 CTAAAATGAG
*
37307833 CT-AAGTGAG
1 CTAAAATGAG
37307842 CTAGAAATGAG
1 CTA-AAATGAG
37307853 CT
1 CT
37307855 CGTTGAGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 8 0.29
10 12 0.43
11 8 0.29
ACGTcount: A:0.43, C:0.12, G:0.24, T:0.21
Consensus pattern (10 bp):
CTAAAATGAG
Found at i:37312444 original size:40 final size:40
Alignment explanation
Indices: 37312361--37312530 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
37312351 GGACTAAGAT
* * * * *
37312361 CCGAAGGCCTTTGTGTGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
37312401 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
37312441 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * * *
37312481 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
37312520 CCGAAGGCATT
1 CCGAAGGCATT
37312531 TGAACAAGGA
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 32 0.29
40 79 0.71
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:37312530 original size:79 final size:80
Alignment explanation
Indices: 37312384--37312530 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 80
37312374 TGTGAGATAC
* * * *
37312384 TAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
37312449 ATTCGTGCGAGTTGT
66 ATTCGTGCGAGTTGT
* * * *
37312464 TAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
37312528 ATT
66 ATT
37312531 TGAACAAGGA
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
79 35 0.59
80 24 0.41
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGTGCGAGTTGT
Found at i:37313098 original size:14 final size:16
Alignment explanation
Indices: 37313074--37313105 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
37313064 ATGATTTAAT
37313074 AATTGAAATAAAA-AG
1 AATTGAAATAAAAGAG
37313089 AATT-AAATAAAAGAG
1 AATTGAAATAAAAGAG
37313104 AA
1 AA
37313106 GAAGGAGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.69, C:0.00, G:0.12, T:0.19
Consensus pattern (16 bp):
AATTGAAATAAAAGAG
Found at i:37315050 original size:40 final size:40
Alignment explanation
Indices: 37315005--37315243 Score: 424
Period size: 40 Copynumber: 6.0 Consensus size: 40
37314995 ATTATTGATA
*
37315005 TATGCGAGTTGATATATCCGGGCTAAAACCCGAAGGCAAT
1 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
37315045 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
1 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
37315085 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
1 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
37315125 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
1 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
*
37315165 TATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAAT
1 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
* * * *
37315205 TATGCAAGTTGATATGTCCGGGTTGAGACCCGAAGGCAA
1 TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
37315244 CTGTGTTTGC
Statistics
Matches: 192, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 192 1.00
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
Found at i:37324319 original size:39 final size:40
Alignment explanation
Indices: 37324168--37324337 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
37324158 GGACTAAGAT
* * *
37324168 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
37324208 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
37324248 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
37324288 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
37324327 CCGAAGGCATT
1 CCGAAGGCATT
37324338 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:37334605 original size:15 final size:14
Alignment explanation
Indices: 37334585--37334620 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
37334575 ATCAAGTTGA
37334585 AAAAAAAATTTCGTG
1 AAAAAAAA-TTCGTG
37334600 AAAAAAAATTCGTG
1 AAAAAAAATTCGTG
37334614 AAAAAAA
1 AAAAAAA
37334621 GAAGAAGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.64, C:0.06, G:0.11, T:0.19
Consensus pattern (14 bp):
AAAAAAAATTCGTG
Found at i:37337075 original size:29 final size:28
Alignment explanation
Indices: 37337039--37337116 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
37337029 TCATGAGATT
37337039 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
37337069 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
37337096 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
37337117 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:37337334 original size:174 final size:174
Alignment explanation
Indices: 37337069--37337570 Score: 914
Period size: 174 Copynumber: 2.9 Consensus size: 174
37337059 AAATTGTACA
*
37337069 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
37337134 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
37337199 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAGTGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
37337243 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
37337308 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACACTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
37337373 TTTTAGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
37337417 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * * *
37337482 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCAAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
37337547 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
37337571 ACCTTGAGTT
Statistics
Matches: 314, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 314 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:37348028 original size:13 final size:13
Alignment explanation
Indices: 37348012--37348070 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 13
37348002 CTTTTCTTCT
37348012 ATTTTTTTCATGA
1 ATTTTTTTCATGA
*
37348025 ATTTTTTTTCACG-
1 A-TTTTTTTCATGA
*
37348038 ATTTTTTT-TTGAA
1 ATTTTTTTCATG-A
37348051 ATTTTTTT--TGA
1 ATTTTTTTCATGA
37348062 ATTTTTTTC
1 ATTTTTTTC
37348071 TCAAATACTT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
11 10 0.26
12 9 0.23
13 10 0.26
14 10 0.26
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.68
Consensus pattern (13 bp):
ATTTTTTTCATGA
Found at i:37352029 original size:16 final size:16
Alignment explanation
Indices: 37352008--37352039 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37351998 GTTTTGTTGC
*
37352008 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
37352024 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
37352040 CTTTCGATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:37353789 original size:12 final size:12
Alignment explanation
Indices: 37353772--37353798 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
37353762 TCCGAAGTAT
37353772 ATATATATATAC
1 ATATATATATAC
37353784 ATATATATATAC
1 ATATATATATAC
37353796 ATA
1 ATA
37353799 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:37354309 original size:27 final size:27
Alignment explanation
Indices: 37354278--37354455 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
37354268 TAAATTGTAC
37354278 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37354305 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37354331 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37354359 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
37354387 AGCACTAAGTGTGCGATATGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37354414 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37354441 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37354456 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37354392 original size:82 final size:81
Alignment explanation
Indices: 37354279--37354434 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
37354269 AAATTGTACA
* *
37354279 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37354343 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* *
37354360 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATATGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37354425 TGCGAGTTGA
65 TGCGAATTGA
37354435 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37354446 original size:82 final size:81
Alignment explanation
Indices: 37354275--37354455 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
37354265 GATTAAATTG
* *
37354275 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37354340 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *
37354356 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATATGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37354420 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37354438 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37354456 GGCTCAATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37354466 original size:27 final size:27
Alignment explanation
Indices: 37354360--37354466 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
37354350 TGACCATGCG
* * * *
37354360 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
37354388 GCACTAAGTGTGCGATATGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
37354415 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
37354442 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
37354467 CATTCGTGAA
Statistics
Matches: 66, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
27 51 0.77
28 15 0.23
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:37358781 original size:47 final size:47
Alignment explanation
Indices: 37358679--37358771 Score: 123
Period size: 47 Copynumber: 2.0 Consensus size: 47
37358669 TTTACATATG
* *
37358679 GATGCCATAGCCCAGCTATGGTCTTACACAGTAGCACATATCACACC
1 GATGCCATAGCCCAGATATGGTCTTACACAGAAGCACATATCACACC
* * * *
37358726 GATGCCATATCCCAGATATGGTCTTATACGGAAATCACATATCACA
1 GATGCCATAGCCCAGATATGGTCTTACACAG-AAGCACATATCACA
37358772 TGTTGCCATA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 27 0.69
48 12 0.31
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (47 bp):
GATGCCATAGCCCAGATATGGTCTTACACAGAAGCACATATCACACC
Found at i:37361529 original size:16 final size:16
Alignment explanation
Indices: 37361508--37361539 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37361498 GTTTTGTTAC
*
37361508 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
37361524 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
37361540 CTTTTAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:37361736 original size:46 final size:43
Alignment explanation
Indices: 37361663--37361761 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 43
37361653 AATAATAACA
*
37361663 GATACACGGTGGATTCAGCACACAGCAACCACCCTTTGTAATCAAT
1 GATAC-CGGTGGATTCAGCACACAGCAACCA-CC-TTATAATCAAT
* *
37361709 GATATCCGGTGCGA-TCAGCACATAGCAACCACCTTATAATTAAT
1 GATA-CCGGTG-GATTCAGCACACAGCAACCACCTTATAATCAAT
37361753 GATACCGGT
1 GATACCGGT
37361762 CCACATAGTA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.10
44 13 0.27
45 2 0.04
46 25 0.52
47 3 0.06
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
GATACCGGTGGATTCAGCACACAGCAACCACCTTATAATCAAT
Found at i:37361825 original size:51 final size:50
Alignment explanation
Indices: 37361757--37361939 Score: 201
Period size: 51 Copynumber: 3.6 Consensus size: 50
37361747 ATTAATGATA
* * *
37361757 CCGGTCCACATAGTAGCCTACACATAGTACTACACATGTGACCATCACTGT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACT-T
* *
37361808 CCGATACACGTAGTAGCCTGCACATAGTACTACACATGTGATCGA--AGCTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATCA-CT-T
* * * *
37361859 CCGGTACGCATAGTAGCCTGCACATTGTACTACACATGCGACCTATCA-TT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTT
* *
37361909 CTGGTACTCGTAGTAGCCTGCACATAGTACT
1 CCGGTACACGTAGTAGCCTGCACATAGTACT
37361940 TCGCACATGA
Statistics
Matches: 111, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
50 30 0.27
51 78 0.70
52 2 0.02
53 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (50 bp):
CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACTT
Found at i:37365506 original size:79 final size:82
Alignment explanation
Indices: 37365395--37365579 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
37365385 GCTACTCGTT
* *
37365395 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37365458 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
37365475 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37365538 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
37365555 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37365580 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:37365579 original size:40 final size:40
Alignment explanation
Indices: 37365376--37365579 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
37365366 CGGAATTTAA
** *
37365376 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37365416 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37365456 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37365495 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37365535 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37365575 CCGGA
1 CCGGA
37365580 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37373370 original size:79 final size:82
Alignment explanation
Indices: 37373259--37373443 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
37373249 GCTACTCGTT
* *
37373259 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37373322 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
37373339 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37373402 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
37373419 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37373444 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:37373443 original size:40 final size:40
Alignment explanation
Indices: 37373240--37373443 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
37373230 CGGAATTTAA
** *
37373240 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37373280 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37373320 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37373359 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37373399 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37373439 CCGGA
1 CCGGA
37373444 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37375573 original size:45 final size:45
Alignment explanation
Indices: 37375521--37375610 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
37375511 AAATTTGCAT
37375521 AAATGACAGAAATATTAAATAATATTTAAATATTAAATTTAACAC
1 AAATGACAGAAATATTAAATAATATTTAAATATTAAATTTAACAC
*
37375566 AAATGACAGAAATCTTAAATAATATTTAAATATTAAATTTAACAC
1 AAATGACAGAAATATTAAATAATATTTAAATATTAAATTTAACAC
37375611 TTACCATTTG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.33
Consensus pattern (45 bp):
AAATGACAGAAATATTAAATAATATTTAAATATTAAATTTAACAC
Found at i:37375774 original size:22 final size:22
Alignment explanation
Indices: 37375762--37375811 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 22
37375752 TAACGAGAGT
37375762 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
* *
37375784 TTTGAGA-G-ATTTGAGAGGAA
1 TTTGAGAGGAATTTAAGAGAAA
37375804 TTTGAGAG
1 TTTGAGAG
37375812 AATATTGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 17 0.68
21 1 0.04
22 7 0.28
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.30
Consensus pattern (22 bp):
TTTGAGAGGAATTTAAGAGAAA
Found at i:37375819 original size:11 final size:10
Alignment explanation
Indices: 37375762--37375819 Score: 64
Period size: 11 Copynumber: 5.5 Consensus size: 10
37375752 TAACGAGAGT
37375762 TTTGAGAGGAA
1 TTTGAGA-GAA
*
37375773 TTTAAGAGAAA
1 TTTGAGAG-AA
37375784 TTTGAGAG-A
1 TTTGAGAGAA
37375793 TTTGAGAGGAA
1 TTTGAGA-GAA
37375804 TTTGAGAGAA
1 TTTGAGAGAA
37375814 TATTGA
1 T-TTGA
37375820 AAGATTGAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 8 0.20
10 6 0.15
11 27 0.66
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.31
Consensus pattern (10 bp):
TTTGAGAGAA
Found at i:37375825 original size:31 final size:31
Alignment explanation
Indices: 37375762--37375825 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
37375752 TAACGAGAGT
*
37375762 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGGAATTTAAGAGAAATTTGAAAGA
*
37375793 TTTGAGAGGAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAGGAATTTAAGAGAAAT-TTGAAAGA
37375824 TT
1 TT
37375826 GAAGATTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 3 0.10
31 27 0.90
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (31 bp):
TTTGAGAGGAATTTAAGAGAAATTTGAAAGA
Found at i:37387872 original size:79 final size:78
Alignment explanation
Indices: 37387772--37387994 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 78
37387762 GCTCCTCGTT
* *
37387772 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCTGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
*
37387837 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
37387852 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCCGG
*
37387915 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * * *
37387930 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTATCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAACCCG
37387993 GA
63 GA
37387995 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 46 0.37
79 56 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGAA
TTAGTAACTCGCA
Found at i:37387893 original size:39 final size:40
Alignment explanation
Indices: 37387772--37387994 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
37387762 GCTCCTCGTT
* *
37387772 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
37387812 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37387852 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37387891 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
37387930 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
*
37387971 C-AA-GCCTTCGGGACTTATCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37387995 CATCATTCAA
Statistics
Matches: 163, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 87 0.53
40 63 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:37395779 original size:39 final size:40
Alignment explanation
Indices: 37395662--37395846 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
37395652 GCTACTCGTT
*
37395662 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
37395702 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
37395742 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
37395781 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
37395822 CAAA-GCCTTCGGGACTTAGCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37395847 CATCATTCAA
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:37395780 original size:79 final size:82
Alignment explanation
Indices: 37395662--37395846 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
37395652 GCTACTCGTT
* *
37395662 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37395725 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
37395742 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37395805 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
*
37395822 CAAA-GCCTTCGGGACTTAGCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37395847 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:37409568 original size:3 final size:3
Alignment explanation
Indices: 37409560--37409589 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
37409550 TGATTCACCG
37409560 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
37409590 CTTTCTCCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
TCA
Found at i:37411188 original size:72 final size:72
Alignment explanation
Indices: 37411005--37411286 Score: 422
Period size: 72 Copynumber: 3.9 Consensus size: 72
37410995 TTAATCTAGT
* *
37411005 ATAAATAAGTAGAACATAAATTTAATA-CCAAAAAACCAAACATAAACAATTATTGATAAAACTA
1 ATAAATAAGTAGAACATAAATTCAATATCC-AAAAACCAAACATAAACAACTATTGATAAAACTA
** *
37411069 GCCCTAAGC
65 G-ATTAAAC
* * *
37411078 ATAAATAATTAGACCATAAATTCAATATCCAAAGACCAAACATAAACAACTATTGATAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
37411143 ATTAAAC
66 ATTAAAC
* *
37411150 ATAAATAAGTAAAACATAAATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
*
37411215 ATTAGAC
66 ATTAAAC
* *
37411222 ATAAATAAGTAGAACATAAATTCAATACCCAAAAACCAAACATAAATAACTATTGATAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
37411287 TTTAGCATTG
Statistics
Matches: 190, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
72 131 0.69
73 57 0.30
74 2 0.01
ACGTcount: A:0.56, C:0.16, G:0.06, T:0.22
Consensus pattern (72 bp):
ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
ATTAAAC
Found at i:37429804 original size:21 final size:21
Alignment explanation
Indices: 37429764--37429806 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37429754 TTTTACCTTA
*
37429764 AATATGAATTGGACTGAATTG
1 AATATGAATTGGACTAAATTG
* *
37429785 AATATGAATTGTATTAAATTG
1 AATATGAATTGGACTAAATTG
37429806 A
1 A
37429807 GTTAAATTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.02, G:0.19, T:0.37
Consensus pattern (21 bp):
AATATGAATTGGACTAAATTG
Found at i:37432703 original size:34 final size:35
Alignment explanation
Indices: 37432660--37432726 Score: 127
Period size: 34 Copynumber: 1.9 Consensus size: 35
37432650 GTATTAAAAA
37432660 TTCTATAAAATTTCTGT-AAAATCAAACAATCAAT
1 TTCTATAAAATTTCTGTAAAAATCAAACAATCAAT
37432694 TTCTATAAAATTTCTGTAAAAATCAAACAATCA
1 TTCTATAAAATTTCTGTAAAAATCAAACAATCA
37432727 GAAAACAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 17 0.53
35 15 0.47
ACGTcount: A:0.48, C:0.15, G:0.03, T:0.34
Consensus pattern (35 bp):
TTCTATAAAATTTCTGTAAAAATCAAACAATCAAT
Found at i:37433690 original size:17 final size:17
Alignment explanation
Indices: 37433668--37433701 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37433658 CACTAACATG
37433668 AAAATGTAATGAAAATA
1 AAAATGTAATGAAAATA
*
37433685 AAAATGTAATGACAATA
1 AAAATGTAATGAAAATA
37433702 TATACTTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.24
Consensus pattern (17 bp):
AAAATGTAATGAAAATA
Found at i:37434183 original size:3 final size:3
Alignment explanation
Indices: 37434106--37434160 Score: 76
Period size: 3 Copynumber: 18.3 Consensus size: 3
37434096 CTCAACAAAG
*
37434106 TCT TCT TCT TCT TTT TCT TCT TCT TCCT T-T TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT T-CT TCT TCT TCT TCT TCT TCT
*
37434151 TGT TCT TCT T
1 TCT TCT TCT T
37434161 TCTCATTTTC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
2 2 0.04
3 41 0.89
4 3 0.07
ACGTcount: A:0.00, C:0.29, G:0.02, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:37447551 original size:17 final size:17
Alignment explanation
Indices: 37447531--37447568 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
37447521 GATTTCTATC
* *
37447531 ATTTGTTTATTTTTATT
1 ATTTCTTTATTTTCATT
37447548 ATTTCTTTATTTTCATT
1 ATTTCTTTATTTTCATT
37447565 ATTT
1 ATTT
37447569 ATTTTTATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTCTTTATTTTCATT
Found at i:37448834 original size:12 final size:12
Alignment explanation
Indices: 37448817--37448843 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
37448807 TCGTATCCCA
37448817 GCCCGTGTCCGT
1 GCCCGTGTCCGT
37448829 GCCCGTGTCCGT
1 GCCCGTGTCCGT
37448841 GCC
1 GCC
37448844 TGTGCAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.44, G:0.33, T:0.22
Consensus pattern (12 bp):
GCCCGTGTCCGT
Found at i:37451828 original size:22 final size:20
Alignment explanation
Indices: 37451801--37451848 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
37451791 AATAAACTAA
*
37451801 AAACTAGAACCCTAAAAAAACG
1 AAACTAGAA-ACTAAAAAAA-G
*
37451823 AAACTA-AAACTAAAGAAAG
1 AAACTAGAAACTAAAAAAAG
37451842 AAACTAG
1 AAACTAG
37451849 GTTAATGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 7 0.30
20 8 0.35
21 2 0.09
22 6 0.26
ACGTcount: A:0.62, C:0.17, G:0.10, T:0.10
Consensus pattern (20 bp):
AAACTAGAAACTAAAAAAAG
Found at i:37456517 original size:24 final size:24
Alignment explanation
Indices: 37456490--37456537 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
37456480 AGGTTTTCTC
*
37456490 TGTTTGATCTCTTGCTATTTTAGG
1 TGTTTGATATCTTGCTATTTTAGG
** *
37456514 TGTTTTTTATCTTTCTATTTTAGG
1 TGTTTGATATCTTGCTATTTTAGG
37456538 CTCATTTGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.12, C:0.10, G:0.17, T:0.60
Consensus pattern (24 bp):
TGTTTGATATCTTGCTATTTTAGG
Found at i:37457176 original size:101 final size:101
Alignment explanation
Indices: 37457001--37457203 Score: 397
Period size: 101 Copynumber: 2.0 Consensus size: 101
37456991 AACATTGAAG
*
37457001 ATAGAACGAGAATCTTAAACTTGATGCCATGGTTGATCAACCAATGCTTATTTGAGATGCTACCT
1 ATAGAACGAGAATCTTAAACTTGATGCCATGATTGATCAACCAATGCTTATTTGAGATGCTACCT
37457066 TTCATTAAGGGTCAAGAACTTGATGGGTACGAGTTT
66 TTCATTAAGGGTCAAGAACTTGATGGGTACGAGTTT
37457102 ATAGAACGAGAATCTTAAACTTGATGCCATGATTGATCAACCAATGCTTATTTGAGATGCTACCT
1 ATAGAACGAGAATCTTAAACTTGATGCCATGATTGATCAACCAATGCTTATTTGAGATGCTACCT
37457167 TTCATTAAGGGTCAAGAACTTGATGGGTACGAGTTT
66 TTCATTAAGGGTCAAGAACTTGATGGGTACGAGTTT
37457203 A
1 A
37457204 ATATTCATCC
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 101 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (101 bp):
ATAGAACGAGAATCTTAAACTTGATGCCATGATTGATCAACCAATGCTTATTTGAGATGCTACCT
TTCATTAAGGGTCAAGAACTTGATGGGTACGAGTTT
Found at i:37460954 original size:28 final size:29
Alignment explanation
Indices: 37460917--37460978 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
37460907 GGACTTATCT
37460917 TTTA-TTCTTGCTG-TTCAATTTCT-TTTC
1 TTTATTTCTTGCTGTTTC-ATTTCTATTTC
*
37460944 TTTATTTCTTGCTGTTTCATTTTTATTTC
1 TTTATTTCTTGCTGTTTCATTTCTATTTC
37460973 TTTATT
1 TTTATT
37460979 CCTACTTGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 4 0.13
28 14 0.45
29 13 0.42
ACGTcount: A:0.11, C:0.15, G:0.06, T:0.68
Consensus pattern (29 bp):
TTTATTTCTTGCTGTTTCATTTCTATTTC
Found at i:37467255 original size:25 final size:25
Alignment explanation
Indices: 37467221--37467315 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 25
37467211 GTTGTAAACA
*
37467221 GTAAGCTCCTTCGAGCTGAATAACG
1 GTAAGCTCCTACGAGCTGAATAACG
* *
37467246 GTAAGATCCTCCGAGCTGAATAACG
1 GTAAGCTCCTACGAGCTGAATAACG
* * * *
37467271 GTAAGCTCATACGAGCTGAGTATCA
1 GTAAGCTCCTACGAGCTGAATAACG
* *
37467296 GTAAGCTCATAAGAGCTGAA
1 GTAAGCTCCTACGAGCTGAA
37467316 ATTGGTAACT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (25 bp):
GTAAGCTCCTACGAGCTGAATAACG
Found at i:37479504 original size:7 final size:6
Alignment explanation
Indices: 37479444--37479514 Score: 61
Period size: 6 Copynumber: 11.7 Consensus size: 6
37479434 AAATTTTAAA
* * ** * * *
37479444 ATTTTT ATTTTT ATTTTTT ATTCTT ATCTTT CCTTTT AATTTT AATTTA
1 ATTTTT ATTTTT A-TTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
*
37479493 ATTTTT ATTTTT ATTTTA ATTT
1 ATTTTT ATTTTT ATTTTT ATTT
37479515 GTTTATGTTT
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
6 46 0.88
7 6 0.12
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (6 bp):
ATTTTT
Found at i:37483332 original size:36 final size:37
Alignment explanation
Indices: 37483263--37483339 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 37
37483253 GGAGTGCATC
* *
37483263 AGTTAGAATAGATCTGAAAGGCTGCTGACCTGAATA-
1 AGTTAGAATAGATCTGAAAGGCTGCTAAACTGAATAG
* *
37483299 AGTTAGAATAGATCTGAAATGTTGCTAAACTGAATAG
1 AGTTAGAATAGATCTGAAAGGCTGCTAAACTGAATAG
37483336 AGTT
1 AGTT
37483340 TACTTAGCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 32 0.89
37 4 0.11
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (37 bp):
AGTTAGAATAGATCTGAAAGGCTGCTAAACTGAATAG
Found at i:37485735 original size:36 final size:35
Alignment explanation
Indices: 37485650--37485746 Score: 99
Period size: 36 Copynumber: 2.7 Consensus size: 35
37485640 ATACTCTGAT
* *
37485650 ATTTTGATTCGCATG-TGAAGCATGCTATTAATCTG
1 ATTTTGATTCGCATGTTG-AGCATGCCATTAATCTA
*
37485685 ATTTTGACTT-GCATGTTGAGCATGCCATTATTTCTA
1 ATTTTGA-TTCGCATGTTGAGCATGCCATTA-ATCTA
* **
37485721 ATTTTGGTTCGCATGTACAGCATGCC
1 ATTTTGATTCGCATGTTGAGCATGCC
37485747 TACTGTAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
35 25 0.48
36 27 0.52
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.40
Consensus pattern (35 bp):
ATTTTGATTCGCATGTTGAGCATGCCATTAATCTA
Found at i:37486148 original size:23 final size:23
Alignment explanation
Indices: 37486122--37486181 Score: 54
Period size: 23 Copynumber: 2.6 Consensus size: 23
37486112 ATATTTAGTA
37486122 TGTTTATGATTTGTTTAAA-CTAT
1 TGTTTAT-ATTTGTTTAAATCTAT
*
37486145 TGTTGT-TATGTG-TTAAATTCTAT
1 TGTT-TATATTTGTTTAAA-TCTAT
37486168 TGTTTATTATTTGT
1 TGTTTA-TATTTGT
37486182 AATCCACATT
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
21 5 0.17
22 5 0.17
23 13 0.45
24 6 0.21
ACGTcount: A:0.22, C:0.03, G:0.15, T:0.60
Consensus pattern (23 bp):
TGTTTATATTTGTTTAAATCTAT
Found at i:37487026 original size:26 final size:26
Alignment explanation
Indices: 37486985--37487066 Score: 101
Period size: 26 Copynumber: 3.2 Consensus size: 26
37486975 TCGATAGAAT
* * *
37486985 TTCCTCAATAGGTAGTCTTTGCGGAC
1 TTCCACAATAGATAGTCCTTGCGGAC
* *
37487011 TTTCACAATAGATAGTCCTTGTGGAC
1 TTCCACAATAGATAGTCCTTGCGGAC
* *
37487037 TTCCACAATAGATAGTCCTTTCAGAC
1 TTCCACAATAGATAGTCCTTGCGGAC
37487063 TTCC
1 TTCC
37487067 TACATATGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (26 bp):
TTCCACAATAGATAGTCCTTGCGGAC
Found at i:37501938 original size:6 final size:6
Alignment explanation
Indices: 37501927--37501967 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
37501917 CTTAGAATGT
*
37501927 TTTCTA TTTCTA TTTCTA TATTCTA TTTTCAA TTTCTA TTT
1 TTTCTA TTTCTA TTTCTA T-TTCTA -TTTCTA TTTCTA TTT
37501968 TTTAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 21 0.68
7 9 0.29
8 1 0.03
ACGTcount: A:0.20, C:0.15, G:0.00, T:0.66
Consensus pattern (6 bp):
TTTCTA
Found at i:37501961 original size:20 final size:19
Alignment explanation
Indices: 37501928--37501965 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
37501918 TTAGAATGTT
*
37501928 TTCTATTTCTATTTCTATA
1 TTCTATTTCAATTTCTATA
37501947 TTCTATTTTCAATTTCTAT
1 TTCTA-TTTCAATTTCTAT
37501966 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.21, C:0.16, G:0.00, T:0.63
Consensus pattern (19 bp):
TTCTATTTCAATTTCTATA
Found at i:37501968 original size:13 final size:13
Alignment explanation
Indices: 37501926--37501968 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
37501916 TCTTAGAATG
37501926 TTTTCTATTTCTA
1 TTTTCTATTTCTA
37501939 -TTTCTATATTCTA
1 TTTTCTAT-TTCTA
*
37501952 TTTTCAATTTCTA
1 TTTTCTATTTCTA
37501965 TTTT
1 TTTT
37501969 TTAAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 7 0.26
13 14 0.52
14 6 0.22
ACGTcount: A:0.19, C:0.14, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTTCTATTTCTA
Found at i:37509132 original size:4 final size:4
Alignment explanation
Indices: 37509123--37509160 Score: 58
Period size: 4 Copynumber: 9.0 Consensus size: 4
37509113 AAGTTTTATT
37509123 TTTA TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
37509161 AATTTTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 24 0.75
5 8 0.25
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:37509140 original size:12 final size:13
Alignment explanation
Indices: 37509117--37509160 Score: 63
Period size: 12 Copynumber: 3.3 Consensus size: 13
37509107 GTTGTAAAGT
37509117 TTTATTTTTATTTA
1 TTTA-TTTTATTTA
37509131 TTTA-TTTATTTA
1 TTTATTTTATTTA
37509143 TTTATTTTATTTA
1 TTTATTTTATTTA
37509156 GTTTA
1 -TTTA
37509161 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.43
13 8 0.29
14 8 0.29
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:37509168 original size:26 final size:26
Alignment explanation
Indices: 37509117--37509169 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
37509107 GTTGTAAAGT
*
37509117 TTTATTTTTATTTATTTATTTATTTA
1 TTTATTTTTATTTATTTAATTATTTA
37509143 TTTA-TTTTATTTAGTTTAAATT-TTTA
1 TTTATTTTTATTTA-TTT-AATTATTTA
37509169 T
1 T
37509170 ATTCAGTCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 9 0.38
26 12 0.50
27 3 0.12
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (26 bp):
TTTATTTTTATTTATTTAATTATTTA
Found at i:37512383 original size:23 final size:20
Alignment explanation
Indices: 37512356--37512406 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 20
37512346 TACTAAATAA
37512356 ATTAATAAT-AAATAATAAAAT
1 ATTAATAATCAAAT--TAAAAT
*
37512377 CATTTAAAAATCAAATTAAAAT
1 -A-TTAATAATCAAATTAAAAT
37512399 ATTAATAA
1 ATTAATAA
37512407 ACTAATATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 6 0.24
21 1 0.04
22 7 0.28
23 7 0.28
24 4 0.16
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTAATAATCAAATTAAAAT
Found at i:37514393 original size:19 final size:20
Alignment explanation
Indices: 37514351--37514393 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
37514341 TCATGCTTTC
*
37514351 TATTCACATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
37514371 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
37514389 TATTC
1 TATTC
37514394 CACTTAGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:37534143 original size:16 final size:19
Alignment explanation
Indices: 37534104--37534143 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
37534094 TTTACCGTCA
37534104 ATACA-CAGTGATGAATGT
1 ATACATCAGTGATGAATGT
37534122 ATACATCAG-GAT-AATG-
1 ATACATCAGTGATGAATGT
37534138 ATACAT
1 ATACAT
37534144 GTATAGGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 6 0.29
17 4 0.19
18 8 0.38
19 3 0.14
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (19 bp):
ATACATCAGTGATGAATGT
Found at i:37534782 original size:3 final size:3
Alignment explanation
Indices: 37534774--37534806 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
37534764 AGCCCATATT
*
37534774 TTC TTC TTC TTC TTC TTC TTC TTC TTC TAC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
37534807 ATGAATTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:37539352 original size:28 final size:29
Alignment explanation
Indices: 37539321--37539384 Score: 67
Period size: 32 Copynumber: 2.1 Consensus size: 29
37539311 TCGTAAATAT
37539321 TAAA-TAATAATATTTACGAACTTGCTCG
1 TAAATTAATAATATTTACGAACTTGCTCG
** *
37539349 TAAAATTGTGTTAATATTTACTAACTTGCTCG
1 T-AAA-T-TAATAATATTTACGAACTTGCTCG
37539381 TAAA
1 TAAA
37539385 ATTGTGGTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
28 1 0.03
29 3 0.10
31 3 0.10
32 22 0.76
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (29 bp):
TAAATTAATAATATTTACGAACTTGCTCG
Found at i:37539369 original size:32 final size:32
Alignment explanation
Indices: 37539328--37539390 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
37539318 TATTAAATAA
37539328 TAATATTTACGAACTTGCTCGTAAAATTGTGT
1 TAATATTTACGAACTTGCTCGTAAAATTGTGT
*
37539360 TAATATTTACTAACTTGCTCGTAAAATTGTG
1 TAATATTTACGAACTTGCTCGTAAAATTGTG
37539391 GTCCCAAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (32 bp):
TAATATTTACGAACTTGCTCGTAAAATTGTGT
Found at i:37540181 original size:66 final size:66
Alignment explanation
Indices: 37540068--37540191 Score: 178
Period size: 66 Copynumber: 1.9 Consensus size: 66
37540058 ATTCGCTAGG
*
37540068 TCCAAACTAACGATTGCAATTAGCCAAGCCCACTGGCAACCCCAATTCGCTAGGCCTACTAGTGA
1 TCCAAACTAACGATTGCAATTAGCCAAGCCCACTGGCAACCCCAATTCGCCAGGCCTACTAGTGA
37540133 A
66 A
* * * * *
37540134 TCCAAACTGATGATTGCAATTCA-CCAAGCCTACTGGCGACCCTAATTCGCCAGGCCTA
1 TCCAAACTAACGATTGCAATT-AGCCAAGCCCACTGGCAACCCCAATTCGCCAGGCCTA
37540192 TTGGTAAATC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
66 50 0.98
67 1 0.02
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (66 bp):
TCCAAACTAACGATTGCAATTAGCCAAGCCCACTGGCAACCCCAATTCGCCAGGCCTACTAGTGA
A
Found at i:37541675 original size:24 final size:25
Alignment explanation
Indices: 37541634--37541680 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
37541624 AAATTTCGGA
*
37541634 AAGAATTTCTCAGAAAC-ACTTTTG
1 AAGAATTCCTCAGAAACAACTTTTG
37541658 AAGAATTCCTTCAG-AACAACTTT
1 AAGAATTCC-TCAGAAACAACTTT
37541681 CTTCTCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (25 bp):
AAGAATTCCTCAGAAACAACTTTTG
Found at i:37545764 original size:25 final size:27
Alignment explanation
Indices: 37545700--37545770 Score: 85
Period size: 25 Copynumber: 2.7 Consensus size: 27
37545690 AATGCTCATA
*
37545700 CGAGCACATA-AACGGGAAGCTCTCTCT
1 CGAGC-CATATAACGGGAAGCTCTATCT
*
37545727 CGAGCCATATAACGGGAAGCTC-ATGT
1 CGAGCCATATAACGGGAAGCTCTATCT
*
37545753 -GAGCCATGTAACGGGAAG
1 CGAGCCATATAACGGGAAG
37545771 TTGATTCGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
25 17 0.43
26 6 0.15
27 17 0.43
ACGTcount: A:0.31, C:0.24, G:0.28, T:0.17
Consensus pattern (27 bp):
CGAGCCATATAACGGGAAGCTCTATCT
Found at i:37545919 original size:25 final size:25
Alignment explanation
Indices: 37545852--37545937 Score: 70
Period size: 25 Copynumber: 3.4 Consensus size: 25
37545842 AGCTCCGGAT
*
37545852 AGCCATATATTAGGAAGCTCATGAAAG
1 AGCCATATATTAGGAAGCTC--CAAAG
* **
37545879 AGCC-TTTAATCGGGAAGCTCCAAAG
1 AGCCATAT-ATTAGGAAGCTCCAAAG
*
37545904 AGCCATATATTAGGAAGAT-CAAGAG
1 AGCCATATATTAGGAAGCTCCAA-AG
37545929 AGCCA-ATAT
1 AGCCATATAT
37545938 CAAGATGATC
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
24 7 0.15
25 23 0.48
26 4 0.08
27 14 0.29
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (25 bp):
AGCCATATATTAGGAAGCTCCAAAG
Found at i:37553568 original size:27 final size:27
Alignment explanation
Indices: 37553538--37553616 Score: 65
Period size: 25 Copynumber: 3.0 Consensus size: 27
37553528 ATTCAAGAAT
37553538 GCTCACACGAGCACATA-AACGGGAAGC
1 GCTCACACGAGC-CATATAACGGGAAGC
* * *
37553565 GCTCTCTCGAGCCATATAATGGGAA--
1 GCTCACACGAGCCATATAACGGGAAGC
*** *
37553590 GCTCATGTGAGCCATGTAACGGGAAGC
1 GCTCACACGAGCCATATAACGGGAAGC
37553617 TTATACGAGT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
25 19 0.47
26 4 0.10
27 17 0.43
ACGTcount: A:0.30, C:0.25, G:0.28, T:0.16
Consensus pattern (27 bp):
GCTCACACGAGCCATATAACGGGAAGC
Found at i:37555268 original size:24 final size:26
Alignment explanation
Indices: 37555241--37555299 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 26
37555231 AAGCTCATAT
*
37555241 GAGCCAATA-AT-AGGAAGCTCCAGA
1 GAGCCAATATATCAGGAAGCTCAAGA
*
37555265 GAGCC-ATATATCATGAAGCTCAAGA
1 GAGCCAATATATCAGGAAGCTCAAGA
37555290 GAGCCAATAT
1 GAGCCAATAT
37555300 TGAGATGCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 3 0.10
24 7 0.23
25 16 0.53
26 4 0.13
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (26 bp):
GAGCCAATATATCAGGAAGCTCAAGA
Found at i:37557683 original size:27 final size:27
Alignment explanation
Indices: 37557652--37557829 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37557642 TAAATTGTAC
37557652 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37557679 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37557705 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37557733 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37557761 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37557788 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37557815 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37557830 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37557766 original size:82 final size:81
Alignment explanation
Indices: 37557653--37557808 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37557643 AAATTGTACA
* *
37557653 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37557717 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37557734 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37557799 TGCGAGTTGA
65 TGCGAATTGA
37557809 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37557820 original size:82 final size:81
Alignment explanation
Indices: 37557649--37557829 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37557639 GATTAAATTG
* *
37557649 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37557714 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37557730 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37557794 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37557812 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37557830 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37571939 original size:27 final size:27
Alignment explanation
Indices: 37571908--37572084 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37571898 TAAATTGTAC
37571908 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37571935 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37571961 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37571989 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
37572017 AGCACTAAGTGTGCGATTTGATTA-GT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37572043 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37572070 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37572085 GACTCGATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 25 0.19
27 81 0.63
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37572054 original size:81 final size:81
Alignment explanation
Indices: 37571909--37572063 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
37571899 AAATTGTACA
*
37571909 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
37571974 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
37571990 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTA-G-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGT
*
37572053 GTGCGAGTTGA
64 GTGCGAATTGA
37572064 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
80 1 0.01
81 35 0.52
82 31 0.46
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37572075 original size:81 final size:81
Alignment explanation
Indices: 37571905--37572084 Score: 229
Period size: 81 Copynumber: 2.2 Consensus size: 81
37571895 GATTAAATTG
*
37571905 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
37571970 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37571986 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTA-G-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
37572049 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37572067 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37572085 GACTCGATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.01
81 52 0.62
82 31 0.37
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37574141 original size:27 final size:27
Alignment explanation
Indices: 37574111--37574260 Score: 158
Period size: 27 Copynumber: 5.6 Consensus size: 27
37574101 ATATTGAGCC
* * *
37574111 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
* *
37574138 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
* ** *
37574165 CGCACACTTAGTGCTGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
37574192 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
37574219 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
37574246 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37574261 GTACAATTTA
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
27 101 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:37574246 original size:81 final size:81
Alignment explanation
Indices: 37574111--37574261 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
37574101 ATATTGAGCC
* *
37574111 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAG
1 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCAACATAATCAAATCGCACACTTAG
37574176 TGCTGCATGGTCAATT
66 TGCTGCATGGTCAATT
* * ** *
37574192 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
1 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCAACATAATCAAATCGCACACTTA
37574256 GTGCTG
65 GTGCTG
37574262 TACAATTTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 2 0.03
81 60 0.97
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCAACATAATCAAATCGCACACTTAG
TGCTGCATGGTCAATT
Found at i:37577740 original size:47 final size:49
Alignment explanation
Indices: 37577682--37577794 Score: 140
Period size: 47 Copynumber: 2.3 Consensus size: 49
37577672 TTATGAAATC
*
37577682 TCCGTGTAAGACCATATCTAGAATATGGCATC-AT-TGTGATATGTGAT
1 TCCGTGTAAGACCATAGCTAGAATATGGCATCGATATGTGATATGTGAT
* * ** *
37577729 TCCGTGAAAGACCATAGCTGGGCTATGGCATCGGTATGTGATATGTGAT
1 TCCGTGTAAGACCATAGCTAGAATATGGCATCGATATGTGATATGTGAT
* *
37577778 TACATGTAAGACCATAG
1 TCCGTGTAAGACCATAG
37577795 TTGGACTATG
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
47 27 0.49
48 1 0.02
49 27 0.49
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (49 bp):
TCCGTGTAAGACCATAGCTAGAATATGGCATCGATATGTGATATGTGAT
Found at i:37577789 original size:49 final size:47
Alignment explanation
Indices: 37577686--37577807 Score: 145
Period size: 49 Copynumber: 2.6 Consensus size: 47
37577676 GAAATCTCCG
* * * * *
37577686 TGTAAGACCATATCTAGAATATGGCATCATTGTGATATGTGATTCCG
1 TGTAAGACCATAGCTGGACTATGGCATCATTGTGATATGTGATTACA
* * *
37577733 TGAAAGACCATAGCTGGGCTATGGCATCGGTATGTGATATGTGATTACA
1 TGTAAGACCATAGCTGGACTATGGCATC-AT-TGTGATATGTGATTACA
*
37577782 TGTAAGACCATAGTTGGACTATGGCA
1 TGTAAGACCATAGCTGGACTATGGCA
37577808 ATGTGAAAAC
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
47 23 0.37
48 1 0.02
49 38 0.61
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (47 bp):
TGTAAGACCATAGCTGGACTATGGCATCATTGTGATATGTGATTACA
Found at i:37580193 original size:18 final size:17
Alignment explanation
Indices: 37580160--37580198 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
37580150 TTTTATAAAT
37580160 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
37580178 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
37580195 TGTG
1 TGTG
37580199 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:37580443 original size:23 final size:23
Alignment explanation
Indices: 37580416--37580468 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
37580406 AGTGTTATTG
37580416 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
37580439 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
37580462 ATCAGTG
1 ATCAGTG
37580469 TGGCACTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:37584464 original size:12 final size:12
Alignment explanation
Indices: 37584447--37584472 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37584437 AAAATCTAAT
37584447 TTCAATGTGTAA
1 TTCAATGTGTAA
37584459 TTCAATGTGTAA
1 TTCAATGTGTAA
37584471 TT
1 TT
37584473 GGATCTCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (12 bp):
TTCAATGTGTAA
Found at i:37590855 original size:29 final size:23
Alignment explanation
Indices: 37590815--37590903 Score: 160
Period size: 23 Copynumber: 3.9 Consensus size: 23
37590805 ATGGTTTGGG
37590815 TTTGGTACGAAATGGAAATGTAA
1 TTTGGTACGAAATGGAAATGTAA
37590838 TTTGGTACGAAATGGAAATGTAA
1 TTTGGTACGAAATGGAAATGTAA
*
37590861 TTTGGTACGAAATGGAAATGGAA
1 TTTGGTACGAAATGGAAATGTAA
*
37590884 TTTGGTTCGAAATGGAAATG
1 TTTGGTACGAAATGGAAATG
37590904 GTTCAAAAAG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 64 1.00
ACGTcount: A:0.37, C:0.04, G:0.28, T:0.30
Consensus pattern (23 bp):
TTTGGTACGAAATGGAAATGTAA
Found at i:37592019 original size:29 final size:31
Alignment explanation
Indices: 37591957--37592021 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 31
37591947 AGCAAAAATT
*
37591957 AATTGAGCTGAATTTGTAAGTATTTGAGCTA
1 AATTGAGCTGAATTTGTAACTATTTGAGCTA
37591988 AATTGAGCTG-ATTTG-AACTCA-TTGAGCTA
1 AATTGAGCTGAATTTGTAACT-ATTTGAGCTA
37592017 AATTG
1 AATTG
37592022 GAAGTTAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 16 0.50
30 6 0.19
31 10 0.31
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (31 bp):
AATTGAGCTGAATTTGTAACTATTTGAGCTA
Found at i:37594722 original size:23 final size:22
Alignment explanation
Indices: 37594670--37594722 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
37594660 TCCACGTCTT
*
37594670 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
37594692 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
37594715 TTTCTTTT
1 TTTCTTTT
37594723 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:37601071 original size:21 final size:21
Alignment explanation
Indices: 37601046--37601106 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
37601036 CATTTTCAGT
* *
37601046 AACTTATTCTTCTTCAACAAC
1 AACTTACTCTTCTGCAACAAC
* *
37601067 AACTTCCTCTTCTGCAGCAAC
1 AACTTACTCTTCTGCAACAAC
37601088 AACTT-C-CTTCT-CAACAAC
1 AACTTACTCTTCTGCAACAAC
37601106 A
1 A
37601107 GTATAGCTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
18 7 0.20
19 5 0.14
20 1 0.03
21 22 0.63
ACGTcount: A:0.31, C:0.34, G:0.03, T:0.31
Consensus pattern (21 bp):
AACTTACTCTTCTGCAACAAC
Found at i:37604808 original size:18 final size:19
Alignment explanation
Indices: 37604777--37604822 Score: 85
Period size: 18 Copynumber: 2.5 Consensus size: 19
37604767 ATAACCATTT
37604777 TTTTTACAATTTTTAATGA
1 TTTTTACAATTTTTAATGA
37604796 TTTTTACAA-TTTTAATGA
1 TTTTTACAATTTTTAATGA
37604814 TTTTTACAA
1 TTTTTACAA
37604823 CAACTTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.67
19 9 0.33
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.57
Consensus pattern (19 bp):
TTTTTACAATTTTTAATGA
Found at i:37606087 original size:19 final size:19
Alignment explanation
Indices: 37606063--37606109 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
37606053 CATAACCATT
37606063 TTTTTACAATTTTTAATGA
1 TTTTTACAATTTTTAATGA
37606082 TTTTTACAATTTTTAATGA
1 TTTTTACAATTTTTAATGA
37606101 TTTTTACAA
1 TTTTTACAA
37606110 CAACTTCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.57
Consensus pattern (19 bp):
TTTTTACAATTTTTAATGA
Found at i:37609685 original size:99 final size:100
Alignment explanation
Indices: 37609503--37609737 Score: 260
Period size: 99 Copynumber: 2.4 Consensus size: 100
37609493 ACATGCGAAA
* * * ** * *
37609503 GCCATATCCTAGACATGGTCTTACATGTGATGTTCTCATATCGGTGCCCATGCCATGTCCCAGAC
1 GCCATGTCCTAAACATGGTCTTACATGGGA-CCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
* *
37609568 ATAGTCTTACGGGGGACCTCTCAT-TTCGGTACCAAC
65 ATAGTCTTACAGGGGACCTCTCATCTT-GATACCAAC
* * * *
37609604 GCCAT-TTCTCAAACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGTCATG-CCCAGAT
1 GCCATGTCCT-AAACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
* * *
37609667 ATGGTCTTACATGGGACCTCTCATCTTGATGCCAAC
65 ATAGTCTTACAGGGGACCTCTCATCTTGATACCAAC
* *
37609703 GCCATGTCCTAGACATGGCCTTACATGGGACCTCT
1 GCCATGTCCTAAACATGGTCTTACATGGGACCTCT
37609738 TTGCCCAAAT
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
99 62 0.55
100 28 0.25
101 23 0.20
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (100 bp):
GCCATGTCCTAAACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGACA
TAGTCTTACAGGGGACCTCTCATCTTGATACCAAC
Found at i:37609689 original size:49 final size:50
Alignment explanation
Indices: 37609503--37609737 Score: 256
Period size: 50 Copynumber: 4.7 Consensus size: 50
37609493 ACATGCGAAA
* * * ** * * *
37609503 GCCATATCCTAGACATGGTCTTACATGTGATGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAAC
* ** * *
37609554 GCCATGTCCCAGACATAGTCTTACGGGGGACCTCTCATTTCGGTACCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* * *
37609604 GCCATTTCTCAAACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* * * *
37609654 GTCATG-CCCAGATATGGTCTTACATGGGACCTCTCATCTTGATGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* *
37609703 GCCATGTCCTAGACATGGCCTTACATGGGACCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37609738 TTGCCCAAAT
Statistics
Matches: 152, Mismatches: 31, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
49 43 0.28
50 85 0.56
51 24 0.16
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
Found at i:37609854 original size:13 final size:13
Alignment explanation
Indices: 37609836--37609862 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37609826 AGTCAACATT
37609836 AAATAAATTCATA
1 AAATAAATTCATA
37609849 AAATAAATTCATA
1 AAATAAATTCATA
37609862 A
1 A
37609863 TTTCTGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATAAATTCATA
Found at i:37610105 original size:30 final size:30
Alignment explanation
Indices: 37610071--37610128 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
37610061 CCTCGACTCT
37610071 AACTTTGGA-AAAATTATGATTTTGCCCCTA
1 AACTTT-GACAAAATTATGATTTTGCCCCTA
* * *
37610101 AACTTTTACATAATTATGTTTTTGCCCC
1 AACTTTGACAAAATTATGATTTTGCCCC
37610129 AAAGTTCGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.41
Consensus pattern (30 bp):
AACTTTGACAAAATTATGATTTTGCCCCTA
Found at i:37615301 original size:27 final size:27
Alignment explanation
Indices: 37615263--37615616 Score: 412
Period size: 27 Copynumber: 13.1 Consensus size: 27
37615253 AGTTATGGAC
37615263 AAATGACTGAAATACCCTCGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* *
37615290 AAATGACCGAAATACCCTTGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
*
37615317 AAATGACTGAAATACCCTAGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
**
37615344 AAATGACCAAAATACCCTCGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* *
37615371 AAATGACTAAAATACCCAT-GAAGGATA
1 AAATGACTGAAATACCC-TCGAAGGGTA
*
37615398 AAATGACTGAAATACCCTCAAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
**
37615425 AAATGACCAAAATACCC-CTGAAGGGTA
1 AAATGACTGAAATACCCTC-GAAGGGTA
* *
37615452 AAATGACTGAAATACCCTCAAAGGCTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* * * *
37615479 AAATGACTAAAATACCCCCAAAGGCTA
1 AAATGACTGAAATACCCTCGAAGGGTA
*
37615506 AAATGACTGAAATACCC-CTGAATGGTA
1 AAATGACTGAAATACCCTC-GAAGGGTA
* * *
37615533 AAACGACCGAAATACCCCCGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* *
37615560 AAATGA-TCAAAATACCCCCGAAGGGTA
1 AAATGACT-GAAATACCCTCGAAGGGTA
* *
37615587 AAATGACCGAAATA-CCTCCATAGGGTA
1 AAATGACTGAAATACCCTCGA-AGGGTA
37615614 AAA
1 AAA
37615617 CGATTTTTAT
Statistics
Matches: 283, Mismatches: 35, Indels: 18
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.02
27 273 0.96
28 3 0.01
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.17
Consensus pattern (27 bp):
AAATGACTGAAATACCCTCGAAGGGTA
Found at i:37615811 original size:26 final size:26
Alignment explanation
Indices: 37615779--37615829 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
37615769 GCCACGTTTA
* *
37615779 CTATTACTGGCAGCTTTGCTGCGATT
1 CTATTACTAGCAGCTTTACTGCGATT
*
37615805 CTATTACTAGCAGTTTTACTGCGAT
1 CTATTACTAGCAGCTTTACTGCGAT
37615830 ATTGGTGTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.39
Consensus pattern (26 bp):
CTATTACTAGCAGCTTTACTGCGATT
Found at i:37615961 original size:28 final size:28
Alignment explanation
Indices: 37615921--37615994 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
37615911 GTAATGTTAT
37615921 TGTATTGGGCTAAGGCCCACACTGATAC
1 TGTATTGGGCTAAGGCCCACACTGATAC
* *
37615949 TGTATTGGGCTAAGGCCCGCACTGCTAC
1 TGTATTGGGCTAAGGCCCACACTGATAC
*
37615977 TGAATTGGGCTAAGGCCC
1 TGTATTGGGCTAAGGCCC
37615995 TCATTGTACT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (28 bp):
TGTATTGGGCTAAGGCCCACACTGATAC
Found at i:37617116 original size:29 final size:29
Alignment explanation
Indices: 37617082--37617154 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
37617072 TTAGATATTA
* *
37617082 TTAAATATGTCCTAATTAGTTTAGGTGTT
1 TTAAATATGTCCTAATTAGTTCAAGTGTT
37617111 TTAAATATGTCCTAATTAGTTCAAGTGTT
1 TTAAATATGTCCTAATTAGTTCAAGTGTT
37617140 TTAAATATGTCCTAA
1 TTAAATATGTCCTAA
37617155 ACTAATACAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.45
Consensus pattern (29 bp):
TTAAATATGTCCTAATTAGTTCAAGTGTT
Found at i:37622308 original size:16 final size:15
Alignment explanation
Indices: 37622287--37622328 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
37622277 CATACGAAAT
37622287 TTAAAAAAAAGTGAA
1 TTAAAAAAAAGTGAA
*
37622302 TTGAAAAAAATCGTGAA
1 TT-AAAAAAA-AGTGAA
37622319 TTAAAAAAAA
1 TTAAAAAAAA
37622329 TGATGTTGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 2 0.09
16 14 0.61
17 7 0.30
ACGTcount: A:0.64, C:0.02, G:0.12, T:0.21
Consensus pattern (15 bp):
TTAAAAAAAAGTGAA
Found at i:37622329 original size:17 final size:16
Alignment explanation
Indices: 37622287--37622330 Score: 63
Period size: 17 Copynumber: 2.8 Consensus size: 16
37622277 CATACGAAAT
37622287 TTAAAAAAAA-GTGAA
1 TTAAAAAAAATGTGAA
*
37622302 TTGAAAAAAATCGTGAA
1 TTAAAAAAAAT-GTGAA
37622319 TTAAAAAAAATG
1 TTAAAAAAAATG
37622331 ATGTTGCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 9 0.36
16 1 0.04
17 15 0.60
ACGTcount: A:0.61, C:0.02, G:0.14, T:0.23
Consensus pattern (16 bp):
TTAAAAAAAATGTGAA
Found at i:37633721 original size:54 final size:54
Alignment explanation
Indices: 37633663--37633766 Score: 199
Period size: 54 Copynumber: 1.9 Consensus size: 54
37633653 ATGGGCATGG
*
37633663 CAAGAAGACCATATAGTGTAAGACCTAGTTTGGGACTATGGCATCATATGGGGA
1 CAAGAAGACCATATAGTGTAAGACCTAGTTTGCGACTATGGCATCATATGGGGA
37633717 CAAGAAGACCATATAGTGTAAGACCTAGTTTGCGACTATGGCATCATATG
1 CAAGAAGACCATATAGTGTAAGACCTAGTTTGCGACTATGGCATCATATG
37633767 TGTGAACATG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (54 bp):
CAAGAAGACCATATAGTGTAAGACCTAGTTTGCGACTATGGCATCATATGGGGA
Found at i:37643178 original size:25 final size:25
Alignment explanation
Indices: 37643150--37643216 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
37643140 CTGTGAATTG
* *
37643150 GTATGCTCGC-TCGAGCTGTAGATCA
1 GTATGCTCGCAT-GAGCTATAAATCA
*
37643175 GTATGCTCTCATGAGCTATAAATCA
1 GTATGCTCGCATGAGCTATAAATCA
**
37643200 GTATGCTTTCATGAGCT
1 GTATGCTCGCATGAGCT
37643217 GTGGAGTATC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 36 0.97
26 1 0.03
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (25 bp):
GTATGCTCGCATGAGCTATAAATCA
Found at i:37643396 original size:23 final size:23
Alignment explanation
Indices: 37643352--37643397 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
37643342 CACTCAGTAA
*
37643352 TTATATATTAAAAATAATAACAT
1 TTATATATTAAAAATAAAAACAT
** *
37643375 TTATATATTTCAATTAAAAACAT
1 TTATATATTAAAAATAAAAACAT
37643398 ATAAACACAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (23 bp):
TTATATATTAAAAATAAAAACAT
Found at i:37645145 original size:61 final size:61
Alignment explanation
Indices: 37645077--37645213 Score: 184
Period size: 61 Copynumber: 2.2 Consensus size: 61
37645067 TTGTTCTTTA
** * *
37645077 TTATATGTGAGCCTTAATGGTGGAATCTATTATATGTGGAAGCCTTTGCGGCTATTTTCTG
1 TTATATGTGAGCCTTAATGGCAGAACCTATTATATGTGGAAGCCTTTGCGGCTATTCTCTG
* * *
37645138 TTATATGTGAGCCTTAGTGGCAGAACCTGTTATATGTGGAAGCCTTTGTGGCTATTCTCTG
1 TTATATGTGAGCCTTAATGGCAGAACCTATTATATGTGGAAGCCTTTGCGGCTATTCTCTG
* * *
37645199 ATACATGCGAGCCTT
1 TTATATGTGAGCCTT
37645214 CGTGGTGAAG
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 66 1.00
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (61 bp):
TTATATGTGAGCCTTAATGGCAGAACCTATTATATGTGGAAGCCTTTGCGGCTATTCTCTG
Done.