Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 129 of 230
Found at i:37645189 original size:31 final size:32
Alignment explanation
Indices: 37645106--37645191 Score: 97
Period size: 29 Copynumber: 2.8 Consensus size: 32
37645096 GTGGAATCTA
* ****
37645106 TTATATGTGGAAGCCTTTGCGGCTATTTTCTG
1 TTATATGTGGAAGCCTTTGTGGCTAGAACCTG
*
37645138 TTATATGT-G-AGCCTTAGTGGC-AGAACCTG
1 TTATATGTGGAAGCCTTTGTGGCTAGAACCTG
37645167 TTATATGTGGAAGCCTTTGTGGCTA
1 TTATATGTGGAAGCCTTTGTGGCTA
37645192 TTCTCTGATA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
29 12 0.27
30 11 0.25
31 12 0.27
32 9 0.20
ACGTcount: A:0.20, C:0.15, G:0.27, T:0.38
Consensus pattern (32 bp):
TTATATGTGGAAGCCTTTGTGGCTAGAACCTG
Found at i:37645275 original size:30 final size:30
Alignment explanation
Indices: 37645241--37645313 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
37645231 TATGAATCTA
* * *
37645241 GATGCTTTTGTGGCTACCTAATGATGTGTG
1 GATGCCTTTATGGCTACCTAATAATGTGTG
**
37645271 GATGCCTTTATGGCTATTTAATAATGTGTG
1 GATGCCTTTATGGCTACCTAATAATGTGTG
37645301 GATGCCTTTATGG
1 GATGCCTTTATGG
37645314 ATAGATGCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.19, C:0.12, G:0.27, T:0.41
Consensus pattern (30 bp):
GATGCCTTTATGGCTACCTAATAATGTGTG
Found at i:37645365 original size:76 final size:76
Alignment explanation
Indices: 37645239--37645389 Score: 284
Period size: 76 Copynumber: 2.0 Consensus size: 76
37645229 TGTATGAATC
* *
37645239 TAGATGCTTTTGTGGCTACCTAATGATGTGTGGATGCCTTTATGGCTATTTAATAATGTGTGGAT
1 TAGATGCTATTGTGGCTACCTAATGATGTGTGGACGCCTTTATGGCTATTTAATAATGTGTGGAT
37645304 GCCTTTATGGA
66 GCCTTTATGGA
37645315 TAGATGCTATTGTGGCTACCTAATGATGTGTGGACGCCTTTATGGCTATTTAATAATGTGTGGAT
1 TAGATGCTATTGTGGCTACCTAATGATGTGTGGACGCCTTTATGGCTATTTAATAATGTGTGGAT
37645380 GCCTTTATGG
66 GCCTTTATGG
37645390 CTATCTAATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.40
Consensus pattern (76 bp):
TAGATGCTATTGTGGCTACCTAATGATGTGTGGACGCCTTTATGGCTATTTAATAATGTGTGGAT
GCCTTTATGGA
Found at i:37645374 original size:30 final size:30
Alignment explanation
Indices: 37645327--37645431 Score: 147
Period size: 30 Copynumber: 3.5 Consensus size: 30
37645317 GATGCTATTG
* *
37645327 TGGCTACCTAATGATGTGTGGACGCCTTTA
1 TGGCTATCTAATGATGTGTGGATGCCTTTA
* *
37645357 TGGCTATTTAATAATGTGTGGATGCCTTTA
1 TGGCTATCTAATGATGTGTGGATGCCTTTA
* *
37645387 TGGCTATCTAATGATGTATGGATGCCTTTG
1 TGGCTATCTAATGATGTGTGGATGCCTTTA
*
37645417 TGGCTATCTATTGAT
1 TGGCTATCTAATGAT
37645432 CAAGCAAGTG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.21, C:0.14, G:0.25, T:0.40
Consensus pattern (30 bp):
TGGCTATCTAATGATGTGTGGATGCCTTTA
Found at i:37646660 original size:20 final size:22
Alignment explanation
Indices: 37646635--37646675 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
37646625 TATGCATGGA
37646635 TGTAAC-TCCTTTT-TCAAATT
1 TGTAACATCCTTTTCTCAAATT
*
37646655 TGTAACATCTTTTTCTCAAAT
1 TGTAACATCCTTTTCTCAAAT
37646676 CTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 6 0.33
22 6 0.33
ACGTcount: A:0.27, C:0.20, G:0.05, T:0.49
Consensus pattern (22 bp):
TGTAACATCCTTTTCTCAAATT
Found at i:37647098 original size:36 final size:33
Alignment explanation
Indices: 37647034--37647101 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
37647024 AACAAATTAC
* *
37647034 TTTATTAAATCACCACCTATCAAACACCACTAT
1 TTTATTAAATCACCACCCACCAAACACCACTAT
37647067 TTTATTAAATCACCACCACCACCAAACCACCACTA
1 TTTATTAAATCACCA-C-CCACCAAA-CACCACTA
37647102 AACACTGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
33 15 0.50
34 1 0.03
35 6 0.20
36 8 0.27
ACGTcount: A:0.40, C:0.35, G:0.00, T:0.25
Consensus pattern (33 bp):
TTTATTAAATCACCACCCACCAAACACCACTAT
Found at i:37650599 original size:14 final size:15
Alignment explanation
Indices: 37650577--37650653 Score: 61
Period size: 14 Copynumber: 5.0 Consensus size: 15
37650567 CAATCAAACA
37650577 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
37650591 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
37650606 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
37650626 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
*
37650640 CCGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
37650654 ACTGCCAATC
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
14 22 0.43
15 15 0.29
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:37650618 original size:20 final size:20
Alignment explanation
Indices: 37650593--37650632 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37650583 AATATTTTCC
*
37650593 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
37650613 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
37650633 TCATTTTCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:37651371 original size:23 final size:23
Alignment explanation
Indices: 37651345--37651389 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
37651335 CTACAAATTT
37651345 GGTGGTTTAGCCACAACCTACAA
1 GGTGGTTTAGCCACAACCTACAA
*
37651368 GGTGGTTTATCCACAACCTACA
1 GGTGGTTTAGCCACAACCTACA
37651390 TGTTTTAGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (23 bp):
GGTGGTTTAGCCACAACCTACAA
Found at i:37655466 original size:54 final size:54
Alignment explanation
Indices: 37655407--37655618 Score: 234
Period size: 54 Copynumber: 4.0 Consensus size: 54
37655397 GCAAGAATAT
37655407 CATATAGTGTAAGACCTAATTTGGGACTATGGCATCATATGGGGATAAGAAGAC
1 CATATAGTGTAAGACCTAATTTGGGACTATGGCATCATATGGGGATAAGAAGAC
* * * * *
37655461 CATATAGTTTAAGACCTAGTTTGGTACTGTGGCATC--A-GGGGACAAGAAGAC
1 CATATAGTGTAAGACCTAATTTGGGACTATGGCATCATATGGGGATAAGAAGAC
* **** * * *
37655512 CATATAGTGTATGACCTAATTTGGGACTATGGCATCATATACAAATACGAAAAT
1 CATATAGTGTAAGACCTAATTTGGGACTATGGCATCATATGGGGATAAGAAGAC
* * * * *
37655566 CACATAGTGTAAGTCCTAGTTTGGAACTATGGCATCATGTGGGGA-AAGAAGAC
1 CATATAGTGTAAGACCTAATTTGGGACTATGGCATCATATGGGGATAAGAAGAC
37655619 AAAGGATGAT
Statistics
Matches: 124, Mismatches: 31, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
51 44 0.35
52 1 0.01
53 6 0.05
54 73 0.59
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (54 bp):
CATATAGTGTAAGACCTAATTTGGGACTATGGCATCATATGGGGATAAGAAGAC
Found at i:37655528 original size:51 final size:52
Alignment explanation
Indices: 37655398--37655549 Score: 207
Period size: 51 Copynumber: 2.9 Consensus size: 52
37655388 ATGGCCATGG
* *
37655398 CAAGAATATCATATAGTGTAAGACCTAATTTGGGACTATGGCATCATATGGGGA
1 CAAGAAGACCATATAGTGTAAGACCTAATTTGGGACTATGGCATC--ATGGGGA
* * * * *
37655452 TAAGAAGACCATATAGTTTAAGACCTAGTTTGGTACTGTGGCATCA-GGGGA
1 CAAGAAGACCATATAGTGTAAGACCTAATTTGGGACTATGGCATCATGGGGA
*
37655503 CAAGAAGACCATATAGTGTATGACCTAATTTGGGACTATGGCATCAT
1 CAAGAAGACCATATAGTGTAAGACCTAATTTGGGACTATGGCATCAT
37655550 ATACAAATAC
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
51 45 0.54
52 1 0.01
54 38 0.45
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (52 bp):
CAAGAAGACCATATAGTGTAAGACCTAATTTGGGACTATGGCATCATGGGGA
Found at i:37655584 original size:105 final size:105
Alignment explanation
Indices: 37655398--37655602 Score: 275
Period size: 105 Copynumber: 2.0 Consensus size: 105
37655388 ATGGCCATGG
* * **** *
37655398 CAAGAATATCATATAGTGTAAGACCTAATTTGGGACTATGGCATCATATGGGGATAAGAAGACCA
1 CAAGAAGACCATATAGTGTAAGACCTAATTTGGGACTATGGCATCATATACAAATAAGAAAACCA
* * * *
37655463 TATAGTTTAAGACCTAGTTTGGTACTGTGGCATCAGGGGA
66 CATAGTGTAAGACCTAGTTTGGAACTATGGCATCAGGGGA
* * *
37655503 CAAGAAGACCATATAGTGTATGACCTAATTTGGGACTATGGCATCATATACAAATACGAAAATCA
1 CAAGAAGACCATATAGTGTAAGACCTAATTTGGGACTATGGCATCATATACAAATAAGAAAACCA
*
37655568 CATAGTGTAAGTCCTAGTTTGGAACTATGGCATCA
66 CATAGTGTAAGACCTAGTTTGGAACTATGGCATCA
37655603 TGTGGGGAAA
Statistics
Matches: 85, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
105 85 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.27
Consensus pattern (105 bp):
CAAGAAGACCATATAGTGTAAGACCTAATTTGGGACTATGGCATCATATACAAATAAGAAAACCA
CATAGTGTAAGACCTAGTTTGGAACTATGGCATCAGGGGA
Found at i:37655908 original size:24 final size:25
Alignment explanation
Indices: 37655865--37655915 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 25
37655855 ATAGCAGGCC
37655865 CAAACCCAAACAGCCCAAAACTAAA
1 CAAACCCAAACAGCCCAAAACTAAA
*
37655890 CAAACCC-AACAGCCTAAAACTAAA
1 CAAACCCAAACAGCCCAAAACTAAA
37655914 CA
1 CA
37655916 CAAACCCTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.55, C:0.35, G:0.04, T:0.06
Consensus pattern (25 bp):
CAAACCCAAACAGCCCAAAACTAAA
Found at i:37656951 original size:11 final size:12
Alignment explanation
Indices: 37656937--37656966 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
37656927 TTAATTAATA
37656937 ATATTATTATT-
1 ATATTATTATTG
37656948 ATATTATTATTG
1 ATATTATTATTG
37656960 ATATTAT
1 ATATTAT
37656967 AATCAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (12 bp):
ATATTATTATTG
Found at i:37656956 original size:23 final size:23
Alignment explanation
Indices: 37656917--37656966 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
37656907 GCTTGCTATT
*
37656917 TTATTTTTAATTAATTAATAATA
1 TTATTATTAATTAATTAATAATA
* *
37656940 TTATTATTATATT-ATTATTGATA
1 TTATTATTA-ATTAATTAATAATA
37656963 TTAT
1 TTAT
37656967 AATCAAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 20 0.87
24 3 0.13
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
TTATTATTAATTAATTAATAATA
Found at i:37659424 original size:91 final size:91
Alignment explanation
Indices: 37659269--37659448 Score: 324
Period size: 91 Copynumber: 2.0 Consensus size: 91
37659259 GCGAATGCAA
* * * *
37659269 ATTCAGATGCGAGAGCAATTGACTGAATTTCAATAGGAGATGAGAGATCAGGTGCTAGAATTACA
1 ATTCAAATGCGAGAGCAATTGACTGAATTTCAACAAGAGATGAGAGATCAGATGCTAGAATTACA
37659334 GAGAACCTTGATGAGCCAGTTCAAAG
66 GAGAACCTTGATGAGCCAGTTCAAAG
37659360 ATTCAAATGCGAGAGCAATTGACTGAATTTCAACAAGAGATGAGAGATCAGATGCTAGAATTACA
1 ATTCAAATGCGAGAGCAATTGACTGAATTTCAACAAGAGATGAGAGATCAGATGCTAGAATTACA
37659425 GAGAACCTTGATGAGCCAGTTCAA
66 GAGAACCTTGATGAGCCAGTTCAA
37659449 CCGACTACCA
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 85 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (91 bp):
ATTCAAATGCGAGAGCAATTGACTGAATTTCAACAAGAGATGAGAGATCAGATGCTAGAATTACA
GAGAACCTTGATGAGCCAGTTCAAAG
Found at i:37661165 original size:27 final size:27
Alignment explanation
Indices: 37661111--37661165 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
37661101 AAGAAAAATC
* **
37661111 AAAATCAAAGTCAAAATGAAAATGAAA
1 AAAATCAAAATCAAAATGAAAAAAAAA
37661138 AAAATCAAAAATCAAAAT-AAAAAAAAA
1 AAAATC-AAAATCAAAATGAAAAAAAAA
37661165 A
1 A
37661166 CAAAAAGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 14 0.58
28 10 0.42
ACGTcount: A:0.75, C:0.07, G:0.05, T:0.13
Consensus pattern (27 bp):
AAAATCAAAATCAAAATGAAAAAAAAA
Found at i:37661199 original size:23 final size:21
Alignment explanation
Indices: 37661121--37661197 Score: 64
Period size: 23 Copynumber: 3.5 Consensus size: 21
37661111 AAAATCAAAG
* *
37661121 TCAAAATGAAAATGAAAAAAA
1 TCAAAATCAAAAAGAAAAAAA
*
37661142 TCAAAAATCAAAATAAAAAAAAA
1 TC-AAAATCAAAA-AGAAAAAAA
* **
37661165 ACAAAAAGAAGAAAGAAGAAAAA
1 TCAAAATCAA-AAAGAA-AAAAA
37661188 TCAAAATCAA
1 TCAAAATCAA
37661198 GATCAAAATG
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
21 2 0.05
22 18 0.43
23 22 0.52
ACGTcount: A:0.74, C:0.08, G:0.08, T:0.10
Consensus pattern (21 bp):
TCAAAATCAAAAAGAAAAAAA
Found at i:37662163 original size:7 final size:7
Alignment explanation
Indices: 37662151--37662189 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
37662141 CAAAAAAAAT
37662151 AAATGAA
1 AAATGAA
37662158 AAATG-A
1 AAATGAA
*
37662164 GAATGAA
1 AAATGAA
37662171 AAATGAA
1 AAATGAA
37662178 AAATGAA
1 AAATGAA
37662185 AAATG
1 AAATG
37662190 GAGAGGCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 5 0.17
7 24 0.83
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.15
Consensus pattern (7 bp):
AAATGAA
Found at i:37663664 original size:129 final size:129
Alignment explanation
Indices: 37663434--37665938 Score: 3434
Period size: 129 Copynumber: 18.9 Consensus size: 129
37663424 GAATTTCAGA
*
37663434 TCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
* * *
37663499 GTGGAGAGGACTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTTGATCGTATCAAG
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
* * *
37663563 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGATAGTAATCCTATATCCCCGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
*
37663628 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGG
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
*
37663692 TCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
37663757 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATC-AG
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
* *
37663820 ATCTTATCTCTCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTAAGATTAC
1 -TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
* *
37663885 AGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGG
65 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
* *
37663950 TCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTAAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
* *
37664015 GTGGAGCGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGG
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
*
37664079 TCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
*
37664144 GTGGAGCAGG-TTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATC-AG
66 GTGGAGC-GGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
* *
37664207 ATCTTATCTCCCTGACATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCTCTGAGATTAC
1 -TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
* * *
37664272 AGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGTATCAGG
65 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
* *
37664337 TCTTATCTCCCTGAGATTATAGCAGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
* *
37664402 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCT-ACAGTTACAGCAGAGTAGATCGTATCAGG
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGTATCAAG
*
37664466 TCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
* * *
37664531 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGTATCAGG
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
*
37664595 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGCGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
* * *
37664660 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGTATCAGG
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
*
37664724 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCGTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
* *
37664789 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGG
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
* * *
37664853 TCTTATCTCCTTGAGATTACAGCGGATCAGATTGAAGATAGTAATCCTATCTCCCTAAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
* *
37664918 GTGGAGCGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGG
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
* *
37664982 TCTTATCTCCTTGAGATTACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
37665047 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
66 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
*
37665111 TCTTATCTCCCTTAGATTACAGCGGAGCAGATTGAAGAT-GTAATCCTATCTCCCTGA-AGTTAC
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA-TTAC
*
37665174 AGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
65 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAG-----ATC-G-
*
37665239 TTGAAGCCAAAG
123 -T--A-TC-AAG
* * * *
37665251 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGACGCTAGTAATCCTATCTCTCTGA-AGTTA
1 -TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA-TTA
* *
37665315 CAGTGAAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAG
64 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAG-----ATC-G
*
37665380 ATTGAAGCCAAAG
123 --T--A-TC-AAG
* ** * * *
37665393 ATCTTATCTCCCTGAGATTACAGCAGATTAGATTGAAGCTAGTAATCCTATCTCTCT-AAAGTTA
1 -TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA-TTA
**
37665457 CAGTGGAATGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACGTCAG
64 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT--CGT---
37665522 ATTGAAGCCAGAG
124 A-T-----CA-AG
* ** * *
37665535 ATCTTATCTCCCTGAGATTACAACGGAGTGGATTGAAGCTAGTAATCCTATCTCTCTGA-AGTTA
1 -TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA-TTA
* * * *
37665599 TAGTGGAGTGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATGACATCAA
64 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT--CGT---
37665664 ATTGAAGCCAGAG
124 A-T-----CA-AG
* * * * * *
37665677 ATCTTATCTCCCTCAGATTACAACGGAGTAGATTGAAGCTAGTAATCCTATCTCTCT-AAAGTTA
1 -TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA-TTA
* **
37665741 TAGTGGAATGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAG
64 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAG-----ATC-G
*
37665806 ATTGAAGCCAGAG
123 --T--A-TCA-AG
* * * * * * *
37665819 ATCTTATCTCCCTGAGATTACAGCAGAGTAGATTTAAGCTGGTAAT--TCTCTCTCTGA-AGTTA
1 -TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA-TTA
37665881 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC
64 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC
37665939 ACATCAGATT
Statistics
Matches: 2223, Mismatches: 109, Indels: 82
0.92 0.05 0.03
Matches are distributed among these distances:
127 1 0.00
128 80 0.04
129 1504 0.68
130 5 0.00
133 3 0.00
134 1 0.00
135 3 0.00
136 2 0.00
137 3 0.00
138 2 0.00
139 2 0.00
140 68 0.03
141 39 0.02
142 503 0.23
143 1 0.00
145 1 0.00
147 4 0.00
148 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (129 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACA
GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAAG
Found at i:37665366 original size:142 final size:142
Alignment explanation
Indices: 37665111--37665953 Score: 1372
Period size: 142 Copynumber: 6.0 Consensus size: 142
37665101 TCGTATCAAG
* * * *
37665111 TCTTATCTCCCTTAGATTACAGCGGAGCAGATTGAAGAT-GTAATCCTATCTCCCTGAAGTTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACA
*
37665175 GTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGAT
66 GTGAAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGAT
*
37665240 TGAAGCCAAAGA
131 TGAAGCCAGAGA
*
37665252 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGACGCTAGTAATCCTATCTCTCTGAAGTTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACA
37665317 GTGAAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGAT
66 GTGAAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGAT
*
37665382 TGAAGCCAAAGA
131 TGAAGCCAGAGA
* * *
37665394 TCTTATCTCCCTGAGATTACAGCAGATTAGATTGAAGCTAGTAATCCTATCTCTCTAAAGTTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACA
*
37665459 GTGGAA-TGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACGTCAGA
66 GT-GAAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
37665523 TTGAAGCCAGAGA
130 TTGAAGCCAGAGA
* * *
37665536 TCTTATCTCCCTGAGATTACAACGGAGTGGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTATA
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACA
* * * *
37665601 GTGGAGTGGATTAAAATAAAGGATATTATCTCTCTGAAGTTACAGTAGAGTAGATGACATCAAAT
66 GTGAAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGAT
37665666 TGAAGCCAGAGA
131 TGAAGCCAGAGA
* * * *
37665678 TCTTATCTCCCTCAGATTACAACGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTAAAGTTATA
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACA
37665743 GTGGAA-TGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
66 GT-GAAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
37665807 TTGAAGCCAGAGA
130 TTGAAGCCAGAGA
* * * *
37665820 TCTTATCTCCCTGAGATTACAGCAGAGTAGATTTAAGCTGGTAAT--TCTCTCTCTGAAGTTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACA
* *
37665883 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGAT
66 GTGAAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGAT
37665948 TGAAGC
131 TGAAGC
37665954 TGATAATCCT
Statistics
Matches: 657, Mismatches: 40, Indels: 11
0.93 0.06 0.02
Matches are distributed among these distances:
139 2 0.00
140 81 0.12
141 37 0.06
142 532 0.81
143 5 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (142 bp):
TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACA
GTGAAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGAT
TGAAGCCAGAGA
Found at i:37666107 original size:85 final size:85
Alignment explanation
Indices: 37665958--37666117 Score: 189
Period size: 85 Copynumber: 1.9 Consensus size: 85
37665948 TGAAGCTGAT
* ** * *
37665958 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGACCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGTAGTGGAGCAGACGAAAGAAATAGACCTTATCTCCCTGAAGTTG
37666023 CAGTAGAGCATATCACATCC
66 CAGTAGAGCATATCACATCC
* * * *
37666043 AATCTTATCTCCTTGAAGTTGTAGTGGAGTAGACGAAAGAAATCA-ATCC-TATCTCCCTGCAGT
1 AATCCTATCTCCCTGAAGTTGTAGTGGAGCAGACGAAAGAAAT-AGA-CCTTATCTCCCTGAAGT
* *
37666106 TGTAGTGGAGCA
64 TGCAGTAGAGCA
37666118 GATTAAAACC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 59 0.95
86 3 0.05
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (85 bp):
AATCCTATCTCCCTGAAGTTGTAGTGGAGCAGACGAAAGAAATAGACCTTATCTCCCTGAAGTTG
CAGTAGAGCATATCACATCC
Found at i:37666140 original size:44 final size:43
Alignment explanation
Indices: 37665958--37666164 Score: 141
Period size: 44 Copynumber: 4.8 Consensus size: 43
37665948 TGAAGCTGAT
* * * *
37665958 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAAT
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATAAC
* * * * * * * *
37666001 AGACCTTATCTCTCTGAAGTTGCAGTAGAGCATA-TCACAT-CC
1 A-ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATAAC
* * **
37666043 AATCTTATCTCCTTGAAGTTGTAGTGGAGTAGACGAAAGA-AATC
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAA-ATAA-C
* * **
37666087 AATCCTATCTCCCTGCAGTTGTAGTGGAGCAGATTAAAACCAC
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATAAC
* * * *
37666130 AGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGAT
1 A-ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGAT
37666165 CGCATCAAGT
Statistics
Matches: 121, Mismatches: 36, Indels: 13
0.71 0.21 0.08
Matches are distributed among these distances:
41 25 0.21
42 2 0.02
43 8 0.07
44 86 0.71
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATAAC
Found at i:37666242 original size:44 final size:44
Alignment explanation
Indices: 37666043--37666243 Score: 128
Period size: 44 Copynumber: 4.7 Consensus size: 44
37666033 TATCACATCC
* * * * *
37666043 AATCTTATCTCCTTGAAGTTGTAGTGGAGTAGACGAAAGAAATC
1 AATCCTATCTCCCTAAAGTTGTAGTGGAGCAGACGAAAGAAATA
** ** * *
37666087 AATCCTATCTCCCTGCAGTTGTAGTGGAGCAGATTAAA-ACCACA
1 AATCCTATCTCCCTAAAGTTGTAGTGGAGCAGACGAAAGA-AATA
* * * * * *
37666131 GATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATC----G-CATCA
1 AATCCTATCTCCCTAAAGTTGTAGTGGAGCAGA-CGAAAGAAAT-A
* * **
37666172 AGTCTTATCTCCCTAAA-CAGTAGTGGAGCAGACGAAAGAAATA
1 AATCCTATCTCCCTAAAGTTGTAGTGGAGCAGACGAAAGAAATA
*
37666215 AATCCTATCTCCCCAAAGTTGTAGTGGAG
1 AATCCTATCTCCCTAAAGTTGTAGTGGAG
37666244 TGGATAAAAA
Statistics
Matches: 116, Mismatches: 31, Indels: 20
0.69 0.19 0.12
Matches are distributed among these distances:
39 1 0.01
40 13 0.11
41 15 0.13
43 17 0.15
44 70 0.60
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (44 bp):
AATCCTATCTCCCTAAAGTTGTAGTGGAGCAGACGAAAGAAATA
Found at i:37666679 original size:24 final size:25
Alignment explanation
Indices: 37666636--37666686 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
37666626 ATAGCAGGCC
37666636 CAAACCCAAACACCCCAAAACTAAA
1 CAAACCCAAACACCCCAAAACTAAA
* *
37666661 CAAACCC-AACAGCCTAAAACTAAA
1 CAAACCCAAACACCCCAAAACTAAA
37666685 CA
1 CA
37666687 CAAACCCTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.55, C:0.37, G:0.02, T:0.06
Consensus pattern (25 bp):
CAAACCCAAACACCCCAAAACTAAA
Found at i:37667726 original size:11 final size:12
Alignment explanation
Indices: 37667712--37667741 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
37667702 ATTAATAATA
37667712 ATATTATTATT-
1 ATATTATTATTG
37667723 ATATTATTATTG
1 ATATTATTATTG
37667735 ATATTAT
1 ATATTAT
37667742 AATCAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (12 bp):
ATATTATTATTG
Found at i:37667922 original size:28 final size:27
Alignment explanation
Indices: 37667846--37667924 Score: 70
Period size: 28 Copynumber: 2.8 Consensus size: 27
37667836 TATACATATA
37667846 AATATATACATATCTATATTTTATAATCT
1 AATATATACATA-C-ATATTTTATAATCT
* * * *
37667875 -ATGTATATATGCATGCATTTTATTATCTT
1 AATATATACATACAT--ATTTTATAATC-T
37667904 AATATATACATACATATTTTA
1 AATATATACATACATATTTTA
37667925 GGATATATAT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
26 2 0.05
27 1 0.03
28 24 0.62
29 1 0.03
30 11 0.28
ACGTcount: A:0.38, C:0.10, G:0.04, T:0.48
Consensus pattern (27 bp):
AATATATACATACATATTTTATAATCT
Found at i:37670396 original size:20 final size:21
Alignment explanation
Indices: 37670358--37670396 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
37670348 TTTATGGTTT
*
37670358 TAAATAATTTTTGGGTAAAAA
1 TAAATAATTTTAGGGTAAAAA
*
37670379 TAAAT-ATTTTAGGTTAAA
1 TAAATAATTTTAGGGTAAA
37670397 TTGGAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (21 bp):
TAAATAATTTTAGGGTAAAAA
Found at i:37674130 original size:15 final size:15
Alignment explanation
Indices: 37674110--37674143 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
37674100 TAACGATAAC
37674110 CCACCAGACTTGCCA
1 CCACCAGACTTGCCA
37674125 CCACCAGACTTGCCA
1 CCACCAGACTTGCCA
37674140 CCAC
1 CCAC
37674144 AACTACCCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.50, G:0.12, T:0.12
Consensus pattern (15 bp):
CCACCAGACTTGCCA
Found at i:37677192 original size:27 final size:27
Alignment explanation
Indices: 37677162--37677339 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
37677152 ATATTGAGTC
* * * *
37677162 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37677189 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
37677216 CGCACACTTAGTGCTACATAGTCGAACT
1 CGCACACTTAGTGCTACATAGTC-AAAT
** * *
37677244 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37677271 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37677298 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37677325 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37677340 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37677301 original size:82 final size:81
Alignment explanation
Indices: 37677183--37677338 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
37677173 TGCTATATAA
* * *
37677183 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCGAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTC-AAATCGCA
37677248 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37677265 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37677329 CACTTAGTGC
65 CACTTAGTGC
37677339 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37680059 original size:40 final size:40
Alignment explanation
Indices: 37679968--37680177 Score: 269
Period size: 40 Copynumber: 5.3 Consensus size: 40
37679958 TCCTCGTTCA
* * * * *
37679968 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
37680007 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
37680047 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
37680087 AATGCCCTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
37680127 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
37680167 AAGGCCTTCGG
1 AATGCCTTCGG
37680178 ATCTTAGTCC
Statistics
Matches: 152, Mismatches: 18, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 32 0.21
40 120 0.79
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:37680218 original size:120 final size:118
Alignment explanation
Indices: 37679966--37680229 Score: 269
Period size: 120 Copynumber: 2.2 Consensus size: 118
37679956 GCTCCTCGTT
* * * * *
37679966 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACCATGCCTTCGGGACGTAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGA
* * * * *
37680031 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCA
65 TTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
* * * * *
37680085 CGAATGCCCTCGGGACTTAACCCGGCTTTAATAACTCGCACGAATGCCCTCGGGACTTAACCCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGCTTTAATAACTCACAC-AATGCCCTCGGGACGTAACCCGG
** * ** * **
37680150 ATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCA
64 ATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCA
37680206 CAAAGCCTTCGGGACTTAGCCCGG
1 CAAAGCCTTCGGGACTTAGCCCGG
37680230 ACAGCATTCA
Statistics
Matches: 115, Mismatches: 26, Indels: 7
0.78 0.18 0.05
Matches are distributed among these distances:
119 34 0.30
120 76 0.66
121 5 0.04
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (118 bp):
CAAAGCCTTCGGGACTTAGCCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGAT
TTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
Found at i:37684820 original size:34 final size:34
Alignment explanation
Indices: 37684768--37684904 Score: 109
Period size: 36 Copynumber: 3.9 Consensus size: 34
37684758 TGTAAGTATG
* *
37684768 TATATACATATAGGTATATGAATTAAAATATGTAAA
1 TATATAAATATA--TATATGAATAAAAATATGTAAA
*
37684804 TATATAAGTATATATATGTATATAAAAATATG-AAA
1 TATATAAATATATATATG-A-ATAAAAATATGTAAA
* **
37684839 TATAATAAATATATA-ATAAATAAAGAATATGTTCA
1 TAT-ATAAATATATATATGAATAAA-AATATGTAAA
*
37684874 TATATAAATTATAAGATAT-AATAAGAAATAT
1 TATATAAA-TAT-ATATATGAATAA-AAATAT
37684905 ATATAAGTAT
Statistics
Matches: 84, Mismatches: 8, Indels: 18
0.76 0.07 0.16
Matches are distributed among these distances:
33 5 0.06
34 18 0.21
35 16 0.19
36 42 0.50
37 3 0.04
ACGTcount: A:0.55, C:0.01, G:0.08, T:0.36
Consensus pattern (34 bp):
TATATAAATATATATATGAATAAAAATATGTAAA
Found at i:37684964 original size:31 final size:30
Alignment explanation
Indices: 37684912--37684990 Score: 79
Period size: 31 Copynumber: 2.6 Consensus size: 30
37684902 TATATATAAG
* *
37684912 TATGTATATGTATAT-GAATTATAAAAAAA
1 TATGTATGTGTATATATAATTATAAAAAAA
* **
37684941 TATGTATGTGTATATATATATTATGAAAATG
1 TATGTATGTGTATATATA-ATTATAAAAAAA
* *
37684972 TATGAATGTATATATATAA
1 TATGTATGTGTATATATAA
37684991 CAAAATTTGA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 14 0.34
30 2 0.05
31 25 0.61
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.42
Consensus pattern (30 bp):
TATGTATGTGTATATATAATTATAAAAAAA
Found at i:37690166 original size:50 final size:50
Alignment explanation
Indices: 37690091--37690216 Score: 225
Period size: 50 Copynumber: 2.5 Consensus size: 50
37690081 TTCTTCCATC
37690091 GAGTTTAAGATAAAGCATGGAGTATCCGAGTGATATACATAGGAACTTTG
1 GAGTTTAAGATAAAGCATGGAGTATCCGAGTGATATACATAGGAACTTTG
*
37690141 GAGTTTAAGATAAAGCATGGAGTATCCGAGTGATATCCATAGGAACTTTG
1 GAGTTTAAGATAAAGCATGGAGTATCCGAGTGATATACATAGGAACTTTG
* *
37690191 GAGCTTAAGATAAAGCATAGAGTATC
1 GAGTTTAAGATAAAGCATGGAGTATC
37690217 TGAGGATTCT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 73 1.00
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.27
Consensus pattern (50 bp):
GAGTTTAAGATAAAGCATGGAGTATCCGAGTGATATACATAGGAACTTTG
Found at i:37690171 original size:27 final size:27
Alignment explanation
Indices: 37690090--37690171 Score: 68
Period size: 27 Copynumber: 3.2 Consensus size: 27
37690080 ATTCTTCCAT
37690090 CGAGTTTAAGATAAAGCATGGAGTATC
1 CGAGTTTAAGATAAAGCATGGAGTATC
* * *
37690117 CGAG--T--GATATA-CATAGGAACT-TT
1 CGAGTTTAAGATAAAGCAT-GG-AGTATC
*
37690140 GGAGTTTAAGATAAAGCATGGAGTATC
1 CGAGTTTAAGATAAAGCATGGAGTATC
37690167 CGAGT
1 CGAGT
37690172 GATATCCATA
Statistics
Matches: 39, Mismatches: 8, Indels: 16
0.62 0.13 0.25
Matches are distributed among these distances:
22 3 0.08
23 11 0.28
24 2 0.05
25 2 0.05
26 2 0.05
27 16 0.41
28 3 0.08
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.27
Consensus pattern (27 bp):
CGAGTTTAAGATAAAGCATGGAGTATC
Found at i:37695600 original size:847 final size:847
Alignment explanation
Indices: 37693277--37697504 Score: 8316
Period size: 847 Copynumber: 5.0 Consensus size: 847
37693267 ATCACTGTCT
37693277 ATGTAACACCCCGAACCCGAAACCGACATCGGAGTCGAACACGAGGTGTTAACTGGCTTTAACCT
1 ATGTAACACCCCGAACCCGAAACCGACATCGGAGTCGAACACGAGGTGTTAACTGGCTTTAACCT
37693342 CTTACAAAATTTATTTTCCAGACACTGCCCAATCTGTGTACTAGTCGTTTTAAAAATCATATCTT
66 CTTACAAAATTTATTTTCCAGACACTGCCCAATCTGTGTACTAGTCGTTTTAAAAATCATATCTT
37693407 GAGTTTCGTAACTCGAAAATCAGTTTCGTAATTTTTCCCAGAAACTAGACTCATGTGCCCATCTA
131 GAGTTTCGTAACTCGAAAATCAGTTTCGTAATTTTTCCCAGAAACTAGACTCATGTGCCCATCTA
37693472 TGTATTTTTTTCTAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATTAGTCAAAGTCCCCCAAG
196 TGTATTTTTTTCTAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATTAGTCAAAGTCCCCCAAG
37693537 TTGCAGGGGTCGACTACACTGACCTTTGCCCATTACGACTTGGATATCTCTCTGCACGGGGCTTC
261 TTGCAGGGGTCGACTACACTGACCTTTGCCCATTACGACTTGGATATCTCTCTGCACGGGGCTTC
37693602 AATACTGTTGCCGTTTGTTTCTATGAAAACTAGACTCAGAGAGGAATCTGTACATATATGGTACG
326 AATACTGTTGCCGTTTGTTTCTATGAAAACTAGACTCAGAGAGGAATCTGTACATATATGGTACG
37693667 ACCCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACC
391 ACCCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACC
37693732 GTTCTGGCCCTGTCCCACTAAAATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTCGTT
456 GTTCTGGCCCTGTCCCACTAAAATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTCGTT
37693797 ACTTCCTCATGAAAGCAGACTCATCGAGCTTTGATTACATAATTTATTCATCAATTAATTCCACT
521 ACTTCCTCATGAAAGCAGACTCATCGAGCTTTGATTACATAATTTATTCATCAATTAATTCCACT
37693862 CCTACTATTTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTA
586 CCTACTATTTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTA
37693927 ACTAGGTCCATATCATGCCTACCCTTGATCCAATTCAATCGAACATTCGTGCCATTTTCGCATGG
651 ACTAGGTCCATATCATGCCTACCCTTGATCCAATTCAATCGAACATTCGTGCCATTTTCGCATGG
37693992 CTTAAAGTTTACATGCCATAATTCAAACACAACGTACTAGCTTATACATGCCAAAATGATCTTCT
716 CTTAAAGTTTACATGCCATAATTCAAACACAACGTACTAGCTTATACATGCCAAAATGATCTTCT
37694057 AAACACACTAAGAAGAAAGTACCAAAACTTGCTATCCGGTGTGATGACTTCGATGACGGCCAATA
781 AAACACACTAAGAAGAAAGTACCAAAACTTGCTATCCGGTGTGATGACTTCGATGACGGCCAATA
37694122 AA
846 AA
37694124 ATGTAACACCCCGAACCCGAAACCGACATCGGAGTCGAACACGAGGTGTTAACTGGCTTTAACCT
1 ATGTAACACCCCGAACCCGAAACCGACATCGGAGTCGAACACGAGGTGTTAACTGGCTTTAACCT
37694189 CTTACAAAATTTATTTTCCAGACACTGCCCAATCTGTGTACTAGTCGTTTTAAAAATCATATCTT
66 CTTACAAAATTTATTTTCCAGACACTGCCCAATCTGTGTACTAGTCGTTTTAAAAATCATATCTT
*
37694254 GAGTTTCGTAACTCGAAAATCAGTTTCGTAATTTTTCCCAGAAACTAGACTCATGTGCTCATCTA
131 GAGTTTCGTAACTCGAAAATCAGTTTCGTAATTTTTCCCAGAAACTAGACTCATGTGCCCATCTA
37694319 TGTA-TTTTTTCTAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATTAGTCAAAGTCCCCCAAG
196 TGTATTTTTTTCTAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATTAGTCAAAGTCCCCCAAG
37694383 TTGCAGGGGTCGACTACACTGACCTTTGCCCATTACGACTTGGATATCTCTCTGCACGGGGCTTC
261 TTGCAGGGGTCGACTACACTGACCTTTGCCCATTACGACTTGGATATCTCTCTGCACGGGGCTTC
*
37694448 AATACTGTTTCCGTTTGTTTCTATGAAAACTAGACTCAGAGAGGAATCTGTACATATATGGTACG
326 AATACTGTTGCCGTTTGTTTCTATGAAAACTAGACTCAGAGAGGAATCTGTACATATATGGTACG
37694513 ACCCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACC
391 ACCCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACC
37694578 GTTCTGGCCCTGTCCCACTAAAATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTCGTT
456 GTTCTGGCCCTGTCCCACTAAAATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTCGTT
37694643 ACTTCCTCATGAAAGCAGACTCATCGAGCTTTGATTACATAATTTATTCATCAATTAATTCCACT
521 ACTTCCTCATGAAAGCAGACTCATCGAGCTTTGATTACATAATTTATTCATCAATTAATTCCACT
*
37694708 CCTACTATTTTTAGTGATTTTTCAATCTCATGACACTGTTGCTGCCAGCATCTGTTACGAAAGTA
586 CCTACTATTTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTA
37694773 ACTAGGTCCATATCATGCCTACCCTTGATCCAATTCAATCGAACATTCGTGCCATTTTCGCATGG
651 ACTAGGTCCATATCATGCCTACCCTTGATCCAATTCAATCGAACATTCGTGCCATTTTCGCATGG
37694838 CTTAAAGTTTACATGCCATAATTCAAACACAACGTACTAGCTTATACATGCCAAAATGATCTTCT
716 CTTAAAGTTTACATGCCATAATTCAAACACAACGTACTAGCTTATACATGCCAAAATGATCTTCT
37694903 AAACACACTAAGAAGAAAGTACCAAAACTTGCTATCCGGTGTGATGACTTCGATGACGGCCAATA
781 AAACACACTAAGAAGAAAGTACCAAAACTTGCTATCCGGTGTGATGACTTCGATGACGGCCAATA
37694968 AA
846 AA
37694970 ATGTAACACCCCGAACCCGAAACCGACATCGGAGTCGAACACGAGGTGTTAACTGGCTTTAACCT
1 ATGTAACACCCCGAACCCGAAACCGACATCGGAGTCGAACACGAGGTGTTAACTGGCTTTAACCT
37695035 CTTACAAAATTTATTTTCCAGACACTGCCCAATCTGTGTACTAGTCGTTTTAAAAAT-ATTATCT
66 CTTACAAAATTTATTTTCCAGACACTGCCCAATCTGTGTACTAGTCGTTTTAAAAATCA-TATCT
*
37695099 TGAGTTTCGTAACTCGAAAATCAGTTTCGTAATTTTTCCCAGAAACTAGACTCATGTGCTCATCT
130 TGAGTTTCGTAACTCGAAAATCAGTTTCGTAATTTTTCCCAGAAACTAGACTCATGTGCCCATCT
37695164 ATGTATTTTTTTCTAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATTAGTCAAAGTCCCCCAA
195 ATGTATTTTTTTCTAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATTAGTCAAAGTCCCCCAA
37695229 GTTGCAGGGGTCGACTACACTGACCTTTGCCCATTACGACTTGGATATCTCTCTGCACGGGGCTT
260 GTTGCAGGGGTCGACTACACTGACCTTTGCCCATTACGACTTGGATATCTCTCTGCACGGGGCTT
37695294 CAATACTGTTGCCGTTTGTTTCTATGAAAACTAGACTCAGAGAGGAATCTGTACATATATGGTAC
325 CAATACTGTTGCCGTTTGTTTCTATGAAAACTAGACTCAGAGAGGAATCTGTACATATATGGTAC
*
37695359 GACCCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAGCTGGGAATCCAGAAAC
390 GACCCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAAC
37695424 CGTTCTGGCCCTGTCCCACTAAAATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTCGT
455 CGTTCTGGCCCTGTCCCACTAAAATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTCGT
37695489 TACTTCCTCATGAAAGCAGACTCATCGAGCTTTGATTACATAATTTATTCATCAATTAATTCCAC
520 TACTTCCTCATGAAAGCAGACTCATCGAGCTTTGATTACATAATTTATTCATCAATTAATTCCAC
37695554 TCCTACTATTTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGT
585 TCCTACTATTTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGT
37695619 AACTAGGTCCATATCATGCCTACCCTTGATCCAATTCAATCGAACATTCGTGCCATTTTCGCATG
650 AACTAGGTCCATATCATGCCTACCCTTGATCCAATTCAATCGAACATTCGTGCCATTTTCGCATG
37695684 GCTTAAAGTTTACATGCCATAATTCAAACACAACGTACTAGCTTATACATGCCAAAATGATCTTC
715 GCTTAAAGTTTACATGCCATAATTCAAACACAACGTACTAGCTTATACATGCCAAAATGATCTTC
37695749 TAAACACACTAAGAAGAAAGTACCAAAACTTGCTATCCGGTGTGATGACTTCGATGACGGCCAAT
780 TAAACACACTAAGAAGAAAGTACCAAAACTTGCTATCCGGTGTGATGACTTCGATGACGGCCAAT
37695814 AAA
845 AAA
37695817 ATGTAACACCCCGAACCCGAAACCGACATCGGAGTCGAACACGAGGTGTTAACTGGCTTTAACCT
1 ATGTAACACCCCGAACCCGAAACCGACATCGGAGTCGAACACGAGGTGTTAACTGGCTTTAACCT
37695882 CTTACAAAATTTATTTTCCAGACACTGCCCAATCTGTGTACTAGTCGTTTTAAAAATCATATCTT
66 CTTACAAAATTTATTTTCCAGACACTGCCCAATCTGTGTACTAGTCGTTTTAAAAATCATATCTT
37695947 GAGTTTCGTAACTCGAAAATCAGTTTCGTAATTTTTCCCAGAAACTAGACTCATGTGCCCATCTA
131 GAGTTTCGTAACTCGAAAATCAGTTTCGTAATTTTTCCCAGAAACTAGACTCATGTGCCCATCTA
*
37696012 TGTATATTTTTCTAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATTAGTCAAAGTCCCCCAAG
196 TGTATTTTTTTCTAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATTAGTCAAAGTCCCCCAAG
37696077 TTGCAGGGGTCGACTACACTGACCTTTGCCCATTACGACTTGGATATCTCTCTGCACGGGGCTTC
261 TTGCAGGGGTCGACTACACTGACCTTTGCCCATTACGACTTGGATATCTCTCTGCACGGGGCTTC
*
37696142 AATACTGTTGCCGTTTGTTTCTTTGAAAACTAGACTCAGAGAGGAATCTGTACATATATGGTACG
326 AATACTGTTGCCGTTTGTTTCTATGAAAACTAGACTCAGAGAGGAATCTGTACATATATGGTACG
*
37696207 ACCCCTAATTATCTATGGTTAATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACC
391 ACCCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACC
*
37696272 GTTCTGGCTCTGTCCCACTAAAATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTCGTT
456 GTTCTGGCCCTGTCCCACTAAAATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTCGTT
37696337 ACTTCCTCATGAAAGCAGACTCATCGAGCTTTGATTACATAATTTATTCATCAATTAATTCCACT
521 ACTTCCTCATGAAAGCAGACTCATCGAGCTTTGATTACATAATTTATTCATCAATTAATTCCACT
37696402 CCTACTATTTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTA
586 CCTACTATTTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTA
37696467 ACTAGGTCCATATCATGCCTACCCTTGATCCAATTCAATCGAACATTCGTGCCATTTTCGCATGG
651 ACTAGGTCCATATCATGCCTACCCTTGATCCAATTCAATCGAACATTCGTGCCATTTTCGCATGG
37696532 CTTAAAGTTTACATGCCATAATTCAAACACAACGTACTAGCTTATACATGCCAAAATGATCTTCT
716 CTTAAAGTTTACATGCCATAATTCAAACACAACGTACTAGCTTATACATGCCAAAATGATCTTCT
37696597 AAACACACTAAGAAGAAAGTACCAAAACTTGCTATCCGGTGTGATGACTTCGATGACGGCCAATA
781 AAACACACTAAGAAGAAAGTACCAAAACTTGCTATCCGGTGTGATGACTTCGATGACGGCCAATA
37696662 AA
846 AA
*
37696664 ATGTAGCACCCCGAACCCGAAACCGACATCGGAGTCGAACACGAGGTGTTAACTGGCTTTAACCT
1 ATGTAACACCCCGAACCCGAAACCGACATCGGAGTCGAACACGAGGTGTTAACTGGCTTTAACCT
37696729 CTTACAAAATTTATTTTCCAGACACTGCCCAATCTGTGTACTAGTCGTTTTAAAAATCATATCTT
66 CTTACAAAATTTATTTTCCAGACACTGCCCAATCTGTGTACTAGTCGTTTTAAAAATCATATCTT
37696794 GAGTTTCGTAACTCGAAAATCAGTTTCGTAATTTTTCCCAGAAACTAGACTCATGTGCCCATCTA
131 GAGTTTCGTAACTCGAAAATCAGTTTCGTAATTTTTCCCAGAAACTAGACTCATGTGCCCATCTA
*
37696859 TGTATATTTTTCTAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATTAGTCAAAGTCCCCCAAG
196 TGTATTTTTTTCTAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATTAGTCAAAGTCCCCCAAG
37696924 TTGCAGGGGTCGACTACACTGACCTTTGCCCATTACGACTTGGATATCTCTCTGCACGGGGCTTC
261 TTGCAGGGGTCGACTACACTGACCTTTGCCCATTACGACTTGGATATCTCTCTGCACGGGGCTTC
37696989 AATACTGTTGCCGTTTGTTTCTATGAAAACTAGACTCAGAGAGGAATCTGTACATATATGGTACG
326 AATACTGTTGCCGTTTGTTTCTATGAAAACTAGACTCAGAGAGGAATCTGTACATATATGGTACG
* *
37697054 ACCCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAATTCGGAGCAGGGAATCCAGAAGCC
391 ACCCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACC
37697119 GTTCTGGCCCTGTCCCACTAAAATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTCGTT
456 GTTCTGGCCCTGTCCCACTAAAATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTCGTT
37697184 ACTTCCTCATGAAAGCAGACTCATCGAGCTTTGATTACATAATTTATTCATCAATTAATTCCACT
521 ACTTCCTCATGAAAGCAGACTCATCGAGCTTTGATTACATAATTTATTCATCAATTAATTCCACT
37697249 CCTACTATTTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTA
586 CCTACTATTTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTA
37697314 ACTAGGTCCATATCATGCCTACCCTTGATCCAATTCAATCGAACATTCGTGCCATTTTCGCATGG
651 ACTAGGTCCATATCATGCCTACCCTTGATCCAATTCAATCGAACATTCGTGCCATTTTCGCATGG
37697379 CTTAAAGTTTACATGCCATAATTCAAACACAACGTACTAGCTTATACATGCCAAAATGATCTTCT
716 CTTAAAGTTTACATGCCATAATTCAAACACAACGTACTAGCTTATACATGCCAAAATGATCTTCT
37697444 AAACACACTAAGAAGAAAGTACCAAAACTTGCTATCCGGTGTGATGACTTCGATGACGGCC
781 AAACACACTAAGAAGAAAGTACCAAAACTTGCTATCCGGTGTGATGACTTCGATGACGGCC
37697505 CGACCCCGCA
Statistics
Matches: 3360, Mismatches: 18, Indels: 6
0.99 0.01 0.00
Matches are distributed among these distances:
845 1 0.00
846 842 0.25
847 2516 0.75
848 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (847 bp):
ATGTAACACCCCGAACCCGAAACCGACATCGGAGTCGAACACGAGGTGTTAACTGGCTTTAACCT
CTTACAAAATTTATTTTCCAGACACTGCCCAATCTGTGTACTAGTCGTTTTAAAAATCATATCTT
GAGTTTCGTAACTCGAAAATCAGTTTCGTAATTTTTCCCAGAAACTAGACTCATGTGCCCATCTA
TGTATTTTTTTCTAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATTAGTCAAAGTCCCCCAAG
TTGCAGGGGTCGACTACACTGACCTTTGCCCATTACGACTTGGATATCTCTCTGCACGGGGCTTC
AATACTGTTGCCGTTTGTTTCTATGAAAACTAGACTCAGAGAGGAATCTGTACATATATGGTACG
ACCCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAAGTCGGAGCAGGGAATCCAGAAACC
GTTCTGGCCCTGTCCCACTAAAATCTGATTATCTCTTAATATACTGCCCATATGATCTTTTCGTT
ACTTCCTCATGAAAGCAGACTCATCGAGCTTTGATTACATAATTTATTCATCAATTAATTCCACT
CCTACTATTTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTA
ACTAGGTCCATATCATGCCTACCCTTGATCCAATTCAATCGAACATTCGTGCCATTTTCGCATGG
CTTAAAGTTTACATGCCATAATTCAAACACAACGTACTAGCTTATACATGCCAAAATGATCTTCT
AAACACACTAAGAAGAAAGTACCAAAACTTGCTATCCGGTGTGATGACTTCGATGACGGCCAATA
AA
Found at i:37698045 original size:27 final size:27
Alignment explanation
Indices: 37698015--37698192 Score: 97
Period size: 27 Copynumber: 6.6 Consensus size: 27
37698005 ATATTGAGCC
* * *
37698015 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
37698042 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
37698069 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** **
37698097 CGCACACTTAGTGCCGCATGGTCATTT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
37698124 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * * *
37698151 CACACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
37698178 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37698193 GTACAATTTA
Statistics
Matches: 121, Mismatches: 27, Indels: 6
0.79 0.18 0.04
Matches are distributed among these distances:
27 98 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:37698108 original size:55 final size:55
Alignment explanation
Indices: 37698015--37698192 Score: 186
Period size: 54 Copynumber: 3.3 Consensus size: 55
37698005 ATATTGAGCC
* * *
37698015 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * **
37698069 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCATTT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * * *
37698124 CGCACACTTAGTGC-ATCATATTCATTTCACACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
37698178 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37698193 GTACAATTTA
Statistics
Matches: 101, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 54 0.53
55 44 0.44
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:37707522 original size:17 final size:18
Alignment explanation
Indices: 37707492--37707525 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37707482 GATCTCTAAG
*
37707492 CCTAAAAACTTAAAATAT
1 CCTAAAAACATAAAATAT
37707510 CCTAAAAA-ATAAAATA
1 CCTAAAAACATAAAATA
37707526 AAGTAAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.24
Consensus pattern (18 bp):
CCTAAAAACATAAAATAT
Found at i:37726575 original size:54 final size:54
Alignment explanation
Indices: 37726480--37726583 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 54
37726470 CCGTGTAGCA
* *
37726480 ACCCATGTCTCTGCCTGTGTAACTTACTAACTTGAGACACACAGTC-GTGTCCCC
1 ACCCATGTCTCTGCCCGTGTAACTCACTAACTTGAGACACAC-GTCTGTGTCCCC
* * * *
37726534 ACCCGTGTCTCTGCCCGTGTAACTCACTTACTTGGGTCACACGTCTGTGT
1 ACCCATGTCTCTGCCCGTGTAACTCACTAACTTGAGACACACGTCTGTGT
37726584 TGCAAGTCAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
53 3 0.07
54 40 0.93
ACGTcount: A:0.18, C:0.33, G:0.19, T:0.30
Consensus pattern (54 bp):
ACCCATGTCTCTGCCCGTGTAACTCACTAACTTGAGACACACGTCTGTGTCCCC
Found at i:37728253 original size:20 final size:19
Alignment explanation
Indices: 37728215--37728254 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
37728205 TATTACACAA
*
37728215 TTCAATTTCACATTATATT
1 TTCAATTTCACACTATATT
*
37728234 TTCAATTTTTACACTATATT
1 TTCAA-TTTCACACTATATT
37728254 T
1 T
37728255 GCTTAAACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (19 bp):
TTCAATTTCACACTATATT
Found at i:37732446 original size:26 final size:27
Alignment explanation
Indices: 37732417--37732467 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
37732407 GACCGTAATG
37732417 CCCTTAGAAGGTAAATGACT-ATTTTA
1 CCCTTAGAAGGTAAATGACTGATTTTA
*
37732443 CCCTTCGAAGGTAAATGACTGATTT
1 CCCTTAGAAGGTAAATGACTGATTT
37732468 GTGCTATGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (27 bp):
CCCTTAGAAGGTAAATGACTGATTTTA
Found at i:37732536 original size:16 final size:16
Alignment explanation
Indices: 37732517--37732547 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
37732507 TGATTCTGAG
37732517 CATGACATACTGCATA
1 CATGACATACTGCATA
37732533 CATGACATACTGCAT
1 CATGACATACTGCAT
37732548 GGGGTTGGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (16 bp):
CATGACATACTGCATA
Found at i:37734664 original size:40 final size:40
Alignment explanation
Indices: 37734580--37734804 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
37734570 TTGAATGATG
* * * *
37734580 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37734620 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37734660 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37734699 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37734739 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37734780 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37734805 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37734826 original size:119 final size:119
Alignment explanation
Indices: 37734580--37734837 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
37734570 TTGAATGATG
* *
37734580 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
37734645 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
37734699 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
37734762 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
37734819 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37734838 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:37742719 original size:40 final size:40
Alignment explanation
Indices: 37742629--37742853 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
37742619 TTGAATGATG
* * * *
37742629 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37742669 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37742709 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37742748 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37742788 TCCGGGTTAAGTCCCGAAGGCATTTGTTCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37742829 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37742854 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 119 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37742871 original size:80 final size:80
Alignment explanation
Indices: 37742629--37742886 Score: 224
Period size: 80 Copynumber: 3.2 Consensus size: 80
37742619 TTGAATGATG
* * * * * * *
37742629 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
** *
37742692 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* * *
37742709 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
37742773 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* * *
37742788 TCCGGGTTAAGTCCCGAAGGCATTTGTTCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
37742852 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
37742868 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37742887 TACGTGATTT
Statistics
Matches: 151, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.01
79 73 0.48
80 74 0.49
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:37742875 original size:119 final size:119
Alignment explanation
Indices: 37742629--37742886 Score: 265
Period size: 119 Copynumber: 2.2 Consensus size: 119
37742619 TTGAATGATG
* *
37742629 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
** ** *
37742694 GTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
37742748 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
37742811 TTGTTCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
37742868 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37742887 TACGTGATTT
Statistics
Matches: 115, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
119 81 0.70
120 31 0.27
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:37744770 original size:17 final size:17
Alignment explanation
Indices: 37744748--37744780 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
37744738 TTCAAGAAGG
37744748 GTTTTTAATGAAAACAT
1 GTTTTTAATGAAAACAT
37744765 GTTTTTAATGAAAACA
1 GTTTTTAATGAAAACA
37744781 CTTCAATGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (17 bp):
GTTTTTAATGAAAACAT
Found at i:37744982 original size:42 final size:43
Alignment explanation
Indices: 37744861--37745032 Score: 167
Period size: 43 Copynumber: 4.0 Consensus size: 43
37744851 AAAGCCCGTA
* * * * *
37744861 CGATGCCAACGTCCCAGATC-TGGTCTTACATGTAATC-AACTAT
1 CGATGCCAATGTCCCAGA-CAGGGTCTTACACGAAATCTCA-TAT
* *
37744904 CGATGCCACTGTCCCAGACAGTGTCTTACACGAAA--TCATAT
1 CGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCTCATAT
*
37744945 ACGATGCCAATGT-CCAGACAGGGTCTTACACATAAATCTCATAT
1 -CGATGCCAATGTCCCAGACAGGGTCTTACAC-GAAATCTCATAT
* *
37744989 CGATGCCAACGTCCCAGAC-GTGGTCTTACACGAAATCACATAT
1 CGATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCTCATAT
37745032 C
1 C
37745033 AGAGTCCTAT
Statistics
Matches: 108, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
41 20 0.19
42 16 0.15
43 50 0.46
44 22 0.20
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCTCATAT
Found at i:37752117 original size:50 final size:50
Alignment explanation
Indices: 37752038--37752228 Score: 220
Period size: 50 Copynumber: 3.8 Consensus size: 50
37752028 TTTGGGTAAG
* * * ** *
37752038 GAGGTCCCATGTAAGACTATGTTTAGGACATGGCATTGGCATTGAGATAA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
* *
37752088 GAGGTCCCATGTAAGACCATGTATGGGACATGGCGTTGGCACCGAGATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
** * * * *
37752138 GAGGTCCCCCGTAAGACCATGTCTGAGACATGGCATGGGCACCAATATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
** * *
37752188 GAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37752229 ATAAAAAAAT
Statistics
Matches: 118, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 118 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA
Found at i:37757665 original size:16 final size:15
Alignment explanation
Indices: 37757630--37757659 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37757620 GAGAAAATAA
37757630 AAAAAGAAATAAGAG
1 AAAAAGAAATAAGAG
37757645 AAAAAGAAA-AAGAG
1 AAAAAGAAATAAGAG
37757659 A
1 A
37757660 TCAAAAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (15 bp):
AAAAAGAAATAAGAG
Found at i:37765270 original size:42 final size:43
Alignment explanation
Indices: 37765168--37765331 Score: 140
Period size: 43 Copynumber: 3.8 Consensus size: 43
37765158 AGCACATACA
* * *
37765168 ATGCCAACGTCTCAGACATGGTCTTACATGTAATCAACTATCG
1 ATGCCAATGTCTCAGACATGGTCTTACACGAAATCAACTATCG
* *
37765211 ATGCCACTGTACT-AGACAGGGTCTTACACGAAATC-A-TATACG
1 ATGCCAATGT-CTCAGACATGGTCTTACACGAAATCAACTAT-CG
* * *
37765253 ATGCTAATGTCTCAGACATGGTCTTACACATAAATCTCAA--ATCA
1 ATGCCAATGTCTCAGACATGGTCTTACAC-GAAA--TCAACTATCG
* * * *
37765297 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATC
1 ATGCCAATGTCTCAGACATGGTCTTACACGAAATC
37765332 GCATATCAGA
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
41 7 0.07
42 26 0.27
43 33 0.34
44 27 0.28
45 4 0.04
46 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCTCAGACATGGTCTTACACGAAATCAACTATCG
Found at i:37767390 original size:20 final size:20
Alignment explanation
Indices: 37767373--37767417 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
37767363 CATTTACTCT
37767373 TCTATGAGTCATTTTACTAA
1 TCTATGAGTCATTTTACTAA
37767393 TCTATGAGTCATTTTACTAA
1 TCTATGAGTCATTTTACTAA
37767413 CTCTA
1 -TCTA
37767418 AACATACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (20 bp):
TCTATGAGTCATTTTACTAA
Found at i:37767519 original size:27 final size:27
Alignment explanation
Indices: 37767485--37767549 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
37767475 TAAGCTTAAC
* **
37767485 AAACACATTTGCGAACCTAGTTCGTCA
1 AAACACATTTGCGAACATAGTTCACCA
* *
37767512 AAATACATTTGTGAACATAGTTCACCA
1 AAACACATTTGCGAACATAGTTCACCA
37767539 AAACACATTTG
1 AAACACATTTG
37767550 ATCTGTCGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (27 bp):
AAACACATTTGCGAACATAGTTCACCA
Found at i:37773892 original size:15 final size:15
Alignment explanation
Indices: 37773873--37773928 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
37773863 TCTCTCTTTC
37773873 CTTTT-CACTTATTT
1 CTTTTACACTTATTT
* *
37773887 CTTTTTCAATCTCTTTTT
1 CTTTTAC-A-CT-TATTT
37773905 C-TTTACACTTATTT
1 CTTTTACACTTATTT
37773919 CTTTTACACT
1 CTTTTACACT
37773929 CATTCTCACT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
14 10 0.29
15 11 0.32
16 2 0.06
17 6 0.18
18 5 0.15
ACGTcount: A:0.16, C:0.23, G:0.00, T:0.61
Consensus pattern (15 bp):
CTTTTACACTTATTT
Found at i:37773900 original size:33 final size:32
Alignment explanation
Indices: 37773845--37773923 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 32
37773835 AAAATAGTCC
* *
37773845 TCACTCATTTC-TTTTCAGTCTCTCTTTCCTTT
1 TCACTTATTTCTTTTTCAATCTCT-TTTCCTTT
*
37773877 TCACTTATTTCTTTTTCAATCTCTTTTTCTTT
1 TCACTTATTTCTTTTTCAATCTCTTTTCCTTT
*
37773909 ACACTTATTTCTTTT
1 TCACTTATTTCTTTT
37773924 ACACTCATTC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
32 31 0.74
33 11 0.26
ACGTcount: A:0.13, C:0.25, G:0.01, T:0.61
Consensus pattern (32 bp):
TCACTTATTTCTTTTTCAATCTCTTTTCCTTT
Found at i:37791224 original size:14 final size:15
Alignment explanation
Indices: 37791199--37791228 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
37791189 CATTACTATT
37791199 CCATTACAAAACATG
1 CCATTACAAAACATG
37791214 CCATT-CAAAACATG
1 CCATTACAAAACATG
37791228 C
1 C
37791229 AACGTGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.43, C:0.30, G:0.07, T:0.20
Consensus pattern (15 bp):
CCATTACAAAACATG
Found at i:37799282 original size:27 final size:27
Alignment explanation
Indices: 37799252--37799428 Score: 165
Period size: 27 Copynumber: 6.5 Consensus size: 27
37799242 AAATTGTACA
*
37799252 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
** * *
37799279 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * **
37799306 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
*
37799333 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
* * * *
37799361 GCACTAAGTGTGCGATTTTATTACGTA
1 GCACTAAGTGTGCGATTTGACTATGTT
* * * * *
37799388 GCACTAAGTGTGTGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTT
*
37799415 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
37799429 GGCTCAACAT
Statistics
Matches: 125, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTT
Found at i:37799419 original size:82 final size:81
Alignment explanation
Indices: 37799248--37799428 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
37799238 GATTAAATTG
* * *
37799248 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37799313 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** * *
37799329 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTTATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
37799393 AAGTGTGTGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37799411 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37799429 GGCTCAACAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 17 0.21
82 64 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37807315 original size:27 final size:26
Alignment explanation
Indices: 37807257--37807432 Score: 138
Period size: 27 Copynumber: 6.5 Consensus size: 26
37807247 AAATTGTACA
* *
37807257 GCACTAAGGGTGC-ATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATG-T
* *
37807283 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATG-T
* *
37807310 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATG-T
*
37807337 GCACTAAGTGTGCGAGTTTGACTATGT
1 GCACTAAGTGTGCGA-ATTGACTATGT
* * * *
37807364 AGCACTAAGTGTGCGATTTTATTACGT
1 -GCACTAAGTGTGCGAATTGACTATGT
* * * *
37807391 AGCACTAAGTGTGTGAGTTGATTATAT
1 -GCACTAAGTGTGCGAATTGACTATGT
*
37807418 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
37807433 GGCTCAACAT
Statistics
Matches: 124, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
26 12 0.10
27 89 0.72
28 23 0.19
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (26 bp):
GCACTAAGTGTGCGAATTGACTATGT
Found at i:37807423 original size:82 final size:81
Alignment explanation
Indices: 37807253--37807432 Score: 193
Period size: 82 Copynumber: 2.2 Consensus size: 81
37807243 GATTAAATTG
* * *
37807253 TACAGCACTAAGGGTGC-ATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37807317 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** * *
37807333 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTTATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
37807397 AAGTGTGTGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37807415 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37807433 GGCTCAACAT
Statistics
Matches: 80, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
80 14 0.17
81 2 0.03
82 64 0.80
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37808841 original size:25 final size:25
Alignment explanation
Indices: 37808812--37808884 Score: 92
Period size: 27 Copynumber: 2.8 Consensus size: 25
37808802 TCTCATCTCG
* *
37808812 ATTTTACTCCAATAAAATTTTAATA
1 ATTTTACCCCAATAAAATTTTAACA
*
37808837 ATTTTACCCCCAAATAAAATTTTAACG
1 ATTTTA-CCCC-AATAAAATTTTAACA
*
37808864 ATTTTACCCCGATAAAATTTT
1 ATTTTACCCCAATAAAATTTT
37808885 GAGAGAATTC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 16 0.38
26 7 0.17
27 19 0.45
ACGTcount: A:0.40, C:0.18, G:0.03, T:0.40
Consensus pattern (25 bp):
ATTTTACCCCAATAAAATTTTAACA
Found at i:37811118 original size:52 final size:50
Alignment explanation
Indices: 37811053--37811175 Score: 140
Period size: 50 Copynumber: 2.4 Consensus size: 50
37811043 ATGAACAAAT
* * *
37811053 GAGTTACTTAATGCATAACTTAATTTAATGATGCAA-ACTTTAACTAACATGG
1 GAGTTACATAATGCATGACTTAATTT-ATGATG-AACAC-TTAACTAACATGA
* * * * *
37811105 GAGTTACACAATGCATGTCATAATTTATTATGAACACTTAACTAACTTGA
1 GAGTTACATAATGCATGACTTAATTTATGATGAACACTTAACTAACATGA
37811155 GAGTTACATAATGCATGACTT
1 GAGTTACATAATGCATGACTT
37811176 TAATAAATGC
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
50 31 0.53
51 7 0.12
52 21 0.36
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (50 bp):
GAGTTACATAATGCATGACTTAATTTATGATGAACACTTAACTAACATGA
Found at i:37811277 original size:15 final size:17
Alignment explanation
Indices: 37811265--37811299 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
37811255 ATAATAAACA
37811265 AGAATTAATTAAAAGCTAT
1 AGAATTAATT-AAA-CTAT
37811284 AGAATTAATTAAACTA
1 AGAATTAATTAAACTA
37811300 AACTAACAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 3 0.19
19 10 0.62
ACGTcount: A:0.54, C:0.06, G:0.09, T:0.31
Consensus pattern (17 bp):
AGAATTAATTAAACTAT
Found at i:37813149 original size:16 final size:16
Alignment explanation
Indices: 37813107--37813166 Score: 59
Period size: 16 Copynumber: 3.6 Consensus size: 16
37813097 ATTCTTTTTC
37813107 TTTCTCTTTTCTTTCAA
1 TTTCT-TTTTCTTTCAA
*
37813124 GCTCTCTTTTTCTTTCAA
1 --TTTCTTTTTCTTTCAA
*
37813142 TTTCTTTTTCTCTC-A
1 TTTCTTTTTCTTTCAA
37813157 TTTACTTTTT
1 TTT-CTTTTT
37813167 ACTTCTCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
15 4 0.11
16 18 0.49
18 11 0.30
19 4 0.11
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (16 bp):
TTTCTTTTTCTTTCAA
Found at i:37813150 original size:17 final size:17
Alignment explanation
Indices: 37813107--37813150 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
37813097 ATTCTTTTTC
*
37813107 TTTCTCTTTTCTTTCAA
1 TTTCTTTTTTCTTTCAA
**
37813124 GCTCTCTTTTTCTTTCAA
1 TTTCT-TTTTTCTTTCAA
37813142 TTTCTTTTT
1 TTTCTTTTT
37813151 CTCTCATTTA
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.09, C:0.23, G:0.02, T:0.66
Consensus pattern (17 bp):
TTTCTTTTTTCTTTCAA
Found at i:37813200 original size:20 final size:20
Alignment explanation
Indices: 37813146--37813200 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
37813136 TTTCAATTTC
37813146 TTTTTCTCTCATTTACTTTT
1 TTTTTCTCTCATTTACTTTT
**
37813166 TACTTCTCTCTATTT-CTTTT
1 TTTTTCTCTC-ATTTACTTTT
*
37813186 ATTTTTCGCTCATTT
1 -TTTTTCTCTCATTT
37813201 TCTCTCATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.11, C:0.22, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTTCTCTCATTTACTTTT
Found at i:37815405 original size:50 final size:52
Alignment explanation
Indices: 37815290--37815410 Score: 149
Period size: 50 Copynumber: 2.4 Consensus size: 52
37815280 ATGAAAAAAT
* * *
37815290 GAGTTACTTAATGCATGACTTAATTTAATGATATAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAATGATATAAACTTTAACTAACATGA
* * * *
37815342 GAGTTACACAATGCATGTCATAATTT-ATTATGA-AAAC-TTAACTAACTTGA
1 GAGTTACATAATGCATGACATAATTTAATGAT-ATAAACTTTAACTAACATGA
37815392 GAGTTACATAATGCATGAC
1 GAGTTACATAATGCATGAC
37815411 TTTAATAAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
50 28 0.47
51 8 0.14
52 23 0.39
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATGATATAAACTTTAACTAACATGA
Found at i:37817995 original size:27 final size:27
Alignment explanation
Indices: 37817975--37818031 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
37817965 CCTACTGGAG
37817975 AACCCCAACTAGTCAAGCCTACTAGCA
1 AACCCCAACTAGTCAAGCCTACTAGCA
*
37818002 AACCCCAACTCGTCAAGCCTACTAGCA
1 AACCCCAACTAGTCAAGCCTACTAGCA
37818029 AAC
1 AAC
37818032 ACCAGCTCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.39, G:0.11, T:0.14
Consensus pattern (27 bp):
AACCCCAACTAGTCAAGCCTACTAGCA
Found at i:37824945 original size:17 final size:17
Alignment explanation
Indices: 37824916--37824965 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
37824906 TCTCCCTCTC
* *
37824916 CCACTTTCTTTTTTTTT
1 CCACTTTCATTTTTTTA
* *
37824933 CCTCTTTCATTTTTTCA
1 CCACTTTCATTTTTTTA
37824950 CCACTTTCATTTTTTT
1 CCACTTTCATTTTTTT
37824966 CTCATCCTTC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.10, C:0.26, G:0.00, T:0.64
Consensus pattern (17 bp):
CCACTTTCATTTTTTTA
Found at i:37824981 original size:35 final size:34
Alignment explanation
Indices: 37824916--37824981 Score: 87
Period size: 35 Copynumber: 1.9 Consensus size: 34
37824906 TCTCCCTCTC
* * *
37824916 CCACTTTCTTTTTTTTTCCTCTTTCATTTTTTCA
1 CCACTTTCTTTTTTTCTCATCCTTCATTTTTTCA
*
37824950 CCACTTTCATTTTTTTCTCATCCTTCCTTTTT
1 CCACTTTC-TTTTTTTCTCATCCTTCATTTTT
37824982 ACTCTATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
34 8 0.30
35 19 0.70
ACGTcount: A:0.09, C:0.29, G:0.00, T:0.62
Consensus pattern (34 bp):
CCACTTTCTTTTTTTCTCATCCTTCATTTTTTCA
Found at i:37828607 original size:29 final size:28
Alignment explanation
Indices: 37828571--37828648 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
37828561 TCATGAGATT
37828571 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
37828601 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
37828628 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
37828649 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:37828866 original size:174 final size:174
Alignment explanation
Indices: 37828601--37829102 Score: 941
Period size: 174 Copynumber: 2.9 Consensus size: 174
37828591 AAATTGTACA
*
37828601 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
37828666 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
37828731 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
37828775 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
37828840 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
37828905 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
37828949 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * * *
37829014 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGAGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
37829079 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
37829103 ACCTTGAGTT
Statistics
Matches: 319, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 319 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:37841918 original size:29 final size:28
Alignment explanation
Indices: 37841861--37841936 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 28
37841851 CTTAATAATC
37841861 AACCGCGCACAC-TAGTGCCATGTACTTTA
1 AACC-CGCACACTTAGTG-CATGTACTTTA
*
37841890 AACTCGCACACTTAGTGC-TGTACAATTTA
1 AACCCGCACACTTAGTGCATGTAC--TTTA
37841919 AACCCGCACACTTAGTGC
1 AACCCGCACACTTAGTGC
37841937 CATCTCATGA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
28 8 0.19
29 29 0.69
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (28 bp):
AACCCGCACACTTAGTGCATGTACTTTA
Found at i:37844581 original size:18 final size:18
Alignment explanation
Indices: 37844558--37844639 Score: 114
Period size: 18 Copynumber: 4.6 Consensus size: 18
37844548 TGTGGGTAGG
37844558 CCGTGTGG-TAACACACGC
1 CCGTGTGGCT-ACACACGC
37844576 CCGTGTGG-TAACACACGC
1 CCGTGTGGCT-ACACACGC
*
37844594 CCGTGTGGCTACACAAGC
1 CCGTGTGGCTACACACGC
*
37844612 CCGTGTGGCTATACACGC
1 CCGTGTGGCTACACACGC
37844630 CCGTGTGGCT
1 CCGTGTGGCT
37844640 TGGGACACGT
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
18 59 0.98
19 1 0.02
ACGTcount: A:0.18, C:0.33, G:0.29, T:0.20
Consensus pattern (18 bp):
CCGTGTGGCTACACACGC
Found at i:37861834 original size:28 final size:28
Alignment explanation
Indices: 37861803--37861859 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
37861793 TATGAGTCCT
* * *
37861803 AAGGTTTTAGTCTCTTTTTATGAGCTGA
1 AAGGTTTCAGTCTCCTTTGATGAGCTGA
37861831 AAGGTTTCAGTCTCCTTTGATGAGCTGA
1 AAGGTTTCAGTCTCCTTTGATGAGCTGA
37861859 A
1 A
37861860 CTATCAATCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.40
Consensus pattern (28 bp):
AAGGTTTCAGTCTCCTTTGATGAGCTGA
Found at i:37874121 original size:34 final size:34
Alignment explanation
Indices: 37874072--37874139 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
37874062 ATTCAATTCA
37874072 TTTGTACACACTTAAAAAGGGACCTAGACAACAT
1 TTTGTACACACTTAAAAAGGGACCTAGACAACAT
* *
37874106 TTTGTGCACATTTAAAAAGGGACCTAGACAACAT
1 TTTGTACACACTTAAAAAGGGACCTAGACAACAT
37874140 CCAAATATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (34 bp):
TTTGTACACACTTAAAAAGGGACCTAGACAACAT
Found at i:37875389 original size:22 final size:21
Alignment explanation
Indices: 37875361--37875420 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 21
37875351 GGCAACTTTT
37875361 TTTTTGCGCTTTTTTTTTGCTC
1 TTTTTGCG-TTTTTTTTTGCTC
*
37875383 TTTTTGCTTCTTTTTTTTGCTC
1 TTTTTGCGT-TTTTTTTTGCTC
37875405 TTTTTGCTGTTTTTTT
1 TTTTTGC-GTTTTTTT
37875421 AAAGAATAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.00, C:0.15, G:0.12, T:0.73
Consensus pattern (21 bp):
TTTTTGCGTTTTTTTTTGCTC
Found at i:37875399 original size:13 final size:12
Alignment explanation
Indices: 37875358--37875409 Score: 56
Period size: 13 Copynumber: 4.4 Consensus size: 12
37875348 GTAGGCAACT
*
37875358 TTTTTTTTGCGC
1 TTTTTTTTGCTC
37875370 TTTTTTTTTGCTC
1 -TTTTTTTTGCTC
37875383 ---TTTTTGCTTC
1 TTTTTTTTGC-TC
37875393 TTTTTTTTGCTC
1 TTTTTTTTGCTC
37875405 TTTTT
1 TTTTT
37875410 GCTGTTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
9 7 0.21
10 2 0.06
12 7 0.21
13 18 0.53
ACGTcount: A:0.00, C:0.15, G:0.10, T:0.75
Consensus pattern (12 bp):
TTTTTTTTGCTC
Found at i:37876006 original size:31 final size:32
Alignment explanation
Indices: 37875947--37876011 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
37875937 GGCAAATTAC
37875947 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
37875979 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
37876010 AA
1 AA
37876012 ATTATCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:37876714 original size:18 final size:20
Alignment explanation
Indices: 37876691--37876734 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
37876681 ATAAGATACA
*
37876691 TTCCATA-AG-AATTAACCT
1 TTCCATATAGTAATAAACCT
*
37876709 TTCCATATAGTCATAAACCT
1 TTCCATATAGTAATAAACCT
37876729 TTCCAT
1 TTCCAT
37876735 TGAGTCACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
19 2 0.09
20 13 0.59
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (20 bp):
TTCCATATAGTAATAAACCT
Found at i:37877823 original size:18 final size:18
Alignment explanation
Indices: 37877800--37877836 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
37877790 AGAAGAAGAA
37877800 AGAAAATTTGATAATATC
1 AGAAAATTTGATAATATC
37877818 AGAAAATTTGATAATATC
1 AGAAAATTTGATAATATC
37877836 A
1 A
37877837 TATTTTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.11, T:0.32
Consensus pattern (18 bp):
AGAAAATTTGATAATATC
Found at i:37879494 original size:40 final size:40
Alignment explanation
Indices: 37879396--37879565 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
37879386 TCCTCGTTCA
* * * *
37879396 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
37879435 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
37879475 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * * *
37879515 AATGCCTTCGAGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
37879555 AAGGCCTTCGG
1 AATGCCTTCGG
37879566 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 34 0.29
40 83 0.71
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:37879602 original size:80 final size:79
Alignment explanation
Indices: 37879394--37879618 Score: 211
Period size: 80 Copynumber: 2.8 Consensus size: 79
37879384 GCTCCTCGTT
* * * * * * *
37879394 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCA-CACAATGCCTTCGGGACATAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACT-AGCACAATGCCTTCGGGACTTAACCCGG
37879458 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * * * *
37879473 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGAGACTTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCAC-AATGCCTTCGGGACTTAACCCGG
** *
37879538 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
** * * * *
37879553 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCACAATGCCTTCGGGACTTAACCCG
37879617 GA
64 GA
37879619 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 22, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
79 37 0.31
80 78 0.65
81 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCGCA
Found at i:37879627 original size:41 final size:41
Alignment explanation
Indices: 37879550--37879627 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37879540 TTAGTATCTC
* * *
37879550 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37879591 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37879628 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37886067 original size:23 final size:23
Alignment explanation
Indices: 37886038--37886094 Score: 82
Period size: 23 Copynumber: 2.5 Consensus size: 23
37886028 AGATGAATCA
37886038 GCCTCCTTGTTACCACCA-TTATCT
1 GCCTCCTTGTTACCACCACTT-T-T
37886062 -CCTCCTTGTTACCACCACTTTT
1 GCCTCCTTGTTACCACCACTTTT
37886084 GCCTCCTTGTT
1 GCCTCCTTGTT
37886095 GAACACTAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 1 0.03
23 28 0.90
24 2 0.06
ACGTcount: A:0.12, C:0.39, G:0.09, T:0.40
Consensus pattern (23 bp):
GCCTCCTTGTTACCACCACTTTT
Found at i:37888657 original size:18 final size:19
Alignment explanation
Indices: 37888624--37888662 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
37888614 TAAACGAATT
*
37888624 GAGTTATTCGAGTTAA-TC
1 GAGTTATTCGAATTAACTC
*
37888642 GAGTTATTTGAATTAACTC
1 GAGTTATTCGAATTAACTC
37888661 GA
1 GA
37888663 ATTTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (19 bp):
GAGTTATTCGAATTAACTC
Found at i:37889287 original size:17 final size:16
Alignment explanation
Indices: 37889239--37889319 Score: 51
Period size: 17 Copynumber: 4.7 Consensus size: 16
37889229 TTATATCTAC
37889239 TATTTATATTATTAAAT
1 TATTTATATTATT-AAT
*
37889256 TAAATTTCACA-TATTATAT
1 T--ATTT-ATATTATTA-AT
37889275 TATTTATATTATTGAAT
1 TATTTATATTATT-AAT
37889292 TATTTAGTCATT-TTGAA-
1 TATTTA-T-ATTATT-AAT
37889309 TATTTATATTA
1 TATTTATATTA
37889320 AAATTGAATT
Statistics
Matches: 53, Mismatches: 2, Indels: 19
0.72 0.03 0.26
Matches are distributed among these distances:
15 3 0.06
16 3 0.06
17 23 0.43
18 8 0.15
19 14 0.26
20 2 0.04
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (16 bp):
TATTTATATTATTAAT
Found at i:37899054 original size:27 final size:27
Alignment explanation
Indices: 37899023--37899200 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
37899013 TAAATTGTAC
37899023 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37899050 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37899076 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
37899104 GGCACTAAGTGCGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37899132 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37899159 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37899186 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37899201 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37899137 original size:82 final size:81
Alignment explanation
Indices: 37899024--37899179 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
37899014 AAATTGTACA
* * *
37899024 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGCGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37899088 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37899105 GCACTAAGTGCGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGCGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37899170 TGCGAGTTGA
65 TGCGAATTGA
37899180 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGCGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37903433 original size:2 final size:2
Alignment explanation
Indices: 37903426--37903472 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
37903416 TTCTTCTTCT
*
37903426 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC AC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
37903468 TC TC T
1 TC TC T
37903473 GTTTCATGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.02, C:0.49, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:37910820 original size:5 final size:5
Alignment explanation
Indices: 37910804--37910992 Score: 297
Period size: 5 Copynumber: 37.8 Consensus size: 5
37910794 TGCAATTTGG
* ** * * * *
37910804 TATGA TACGA TATGA TACAA TATGA TACGG TACGA TACGA TATGA TATGA
1 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
37910854 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
37910904 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
1 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
* *
37910954 TATGA TATGA TATTA TATGA TATTA TATGA TATGA TATG
1 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATG
37910993 GTTAGAATGT
Statistics
Matches: 170, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 170 1.00
ACGTcount: A:0.40, C:0.03, G:0.19, T:0.39
Consensus pattern (5 bp):
TATGA
Found at i:37933575 original size:22 final size:23
Alignment explanation
Indices: 37933544--37933586 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
37933534 ACCTTTTTGA
37933544 ACCATTACCAATTCGTACCAAAT
1 ACCATTACCAATTCGTACCAAAT
*
37933567 ACCA-TACCATTTCGTACCAA
1 ACCATTACCAATTCGTACCAA
37933587 TCCCTAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.37, C:0.33, G:0.05, T:0.26
Consensus pattern (23 bp):
ACCATTACCAATTCGTACCAAAT
Found at i:37934805 original size:62 final size:62
Alignment explanation
Indices: 37934728--37934858 Score: 201
Period size: 62 Copynumber: 2.1 Consensus size: 62
37934718 TGTGTTATGT
*
37934728 AGGTGCACCCGAATTTGAAGAT-ACATTGGGCAGATTCATGCATGTAGATTCAATGAATGTGA
1 AGGTGCACCCGAATTTGAAGATGA-ATTGGGCAGATTCATGCATGGAGATTCAATGAATGTGA
* * *
37934790 AGGTGCAGCCGAATTTGGAGATGAATTGGGCAGATTCATGCATGGAGATTCAATGAATTTGA
1 AGGTGCACCCGAATTTGAAGATGAATTGGGCAGATTCATGCATGGAGATTCAATGAATGTGA
*
37934852 AGATGCA
1 AGGTGCA
37934859 TGTGCAGCTG
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
62 62 0.98
63 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (62 bp):
AGGTGCACCCGAATTTGAAGATGAATTGGGCAGATTCATGCATGGAGATTCAATGAATGTGA
Found at i:37936649 original size:15 final size:15
Alignment explanation
Indices: 37936617--37936650 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
37936607 GTTCAACGAA
*
37936617 GAGGCCAACGCAACC
1 GAGGCCAACGAAACC
*
37936632 GAGGCCAACGAAATC
1 GAGGCCAACGAAACC
37936647 GAGG
1 GAGG
37936651 GAGGTTCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.32, T:0.03
Consensus pattern (15 bp):
GAGGCCAACGAAACC
Found at i:37939627 original size:62 final size:62
Alignment explanation
Indices: 37939550--37939680 Score: 201
Period size: 62 Copynumber: 2.1 Consensus size: 62
37939540 TGTGTTATGT
*
37939550 AGGTGCACCCGAATTTGAAGAT-ACATTGGGCAGATTCATGCATGTAGATTCAATGAATGTGA
1 AGGTGCACCCGAATTTGAAGATGA-ATTGGGCAGATTCATGCATGGAGATTCAATGAATGTGA
* * *
37939612 AGGTGCAGCCGAATTTGGAGATGAATTGGGCAGATTCATGCATGGAGATTCAATGAATTTGA
1 AGGTGCACCCGAATTTGAAGATGAATTGGGCAGATTCATGCATGGAGATTCAATGAATGTGA
*
37939674 AGATGCA
1 AGGTGCA
37939681 TGTGCAGCTG
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
62 62 0.98
63 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (62 bp):
AGGTGCACCCGAATTTGAAGATGAATTGGGCAGATTCATGCATGGAGATTCAATGAATGTGA
Found at i:37949046 original size:21 final size:21
Alignment explanation
Indices: 37949008--37949047 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
37948998 TCCACGTCTT
*
37949008 TTCATTTGTTTCTTTTTCTAA
1 TTCATTTGTCTCTTTTTCTAA
37949029 TTCATTT-TCTCTTCTTTCT
1 TTCATTTGTCTCTT-TTTCT
37949048 TCAATTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.20, G:0.03, T:0.68
Consensus pattern (21 bp):
TTCATTTGTCTCTTTTTCTAA
Found at i:37949110 original size:20 final size:21
Alignment explanation
Indices: 37949064--37949111 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
37949054 TCTTTTTCAC
*
37949064 TCTCAATCTCTTTTTGCTCTT
1 TCTCATTCTCTTTTTGCTCTT
*
37949085 TTTCATTCTCTTTTT-CT-TT
1 TCTCATTCTCTTTTTGCTCTT
37949104 TCCTCATT
1 T-CTCATT
37949112 TGTTTTAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 3 0.13
20 7 0.30
21 13 0.57
ACGTcount: A:0.08, C:0.27, G:0.02, T:0.62
Consensus pattern (21 bp):
TCTCATTCTCTTTTTGCTCTT
Found at i:37949905 original size:30 final size:30
Alignment explanation
Indices: 37949871--37949967 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
37949861 AGCTCACTCC
*
37949871 TAGCTCATA-TTTAGCTCATGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
37949901 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
37949931 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
37949961 TAGCTCA
1 TAGCTCA
37949968 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:37952750 original size:22 final size:22
Alignment explanation
Indices: 37952722--37952765 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
37952712 TTTTGAACCA
37952722 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
37952744 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
37952766 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:37953123 original size:15 final size:15
Alignment explanation
Indices: 37953103--37953138 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
37953093 AAAAAAAATT
37953103 AAAAAAATTG-AAAG
1 AAAAAAATTGAAAAG
37953117 AAAAAAATTGAAAAG
1 AAAAAAATTGAAAAG
37953132 AAAAAAA
1 AAAAAAA
37953139 AATTGTATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (15 bp):
AAAAAAATTGAAAAG
Found at i:37956548 original size:15 final size:14
Alignment explanation
Indices: 37956524--37956561 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
37956514 AAATTGAGAG
37956524 AAGA-AAAAAGAAA
1 AAGAGAAAAAGAAA
37956537 TAAGAGAAAAAGAAA
1 -AAGAGAAAAAGAAA
37956552 AAGATGAAAA
1 AAGA-GAAAA
37956562 TGAGATTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.05
Consensus pattern (14 bp):
AAGAGAAAAAGAAA
Found at i:37960718 original size:21 final size:21
Alignment explanation
Indices: 37960683--37960735 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
37960673 TAACAATTCG
*
37960683 TACCAAATACCATACCATTTCA
1 TACC-AATTCCATACCATTTCA
*
37960705 TACCAATTCCATACCATTTCG
1 TACCAATTCCATACCATTTCA
37960726 TACCAATTCC
1 TACCAATTCC
37960736 CAAATACCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 25 0.86
22 4 0.14
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.30
Consensus pattern (21 bp):
TACCAATTCCATACCATTTCA
Found at i:37963295 original size:20 final size:20
Alignment explanation
Indices: 37963272--37963332 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
37963262 CAACTCCGAC
37963272 CAGCTCAATTAAGCTCATTT
1 CAGCTCAATTAAGCTCATTT
*
37963292 CAGCTCAATCGAA-CTCAATTT
1 CAGCTCAAT-TAAGCTC-ATTT
*
37963313 -AGCTACAATTCAGCTCATTT
1 CAGCT-CAATTAAGCTCATTT
37963333 ATTTTATTGG
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
20 21 0.62
21 13 0.38
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (20 bp):
CAGCTCAATTAAGCTCATTT
Found at i:37966217 original size:20 final size:19
Alignment explanation
Indices: 37966194--37966258 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
37966184 AAGCTCAAAC
37966194 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
37966214 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
37966234 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
37966254 GAGCT
1 GAGCT
37966259 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:37967546 original size:17 final size:18
Alignment explanation
Indices: 37967524--37967557 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37967514 ACAACACTCC
*
37967524 TTTCTT-CTTCACTCTCG
1 TTTCTTCCTTCAATCTCG
37967541 TTTCTTCCTTCAATCTC
1 TTTCTTCCTTCAATCTC
37967558 ACTCTCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.09, C:0.35, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTCTTCCTTCAATCTCG
Found at i:37967665 original size:15 final size:16
Alignment explanation
Indices: 37967640--37967671 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
37967630 TATCTCACAC
37967640 TCATCTTCTTTTTCTT
1 TCATCTTCTTTTTCTT
37967656 TCAT-TTCTTTTTCTT
1 TCATCTTCTTTTTCTT
37967671 T
1 T
37967672 TTCATTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (16 bp):
TCATCTTCTTTTTCTT
Found at i:37968624 original size:30 final size:28
Alignment explanation
Indices: 37968582--37968654 Score: 85
Period size: 30 Copynumber: 2.6 Consensus size: 28
37968572 CTCGCAAGAC
*
37968582 TTTTCA-CTTTTTTTTAACTTGATTTTT
1 TTTTCACCTTTTTTTTAACTCGATTTTT
**
37968609 TTTGGTCACCTTTTTTTTTGCTCGATTTTT
1 TTT--TCACCTTTTTTTTAACTCGATTTTT
*
37968639 TTTTCACTTTTTTTTT
1 TTTTCACCTTTTTTTT
37968655 GAATTTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
27 3 0.08
28 12 0.31
29 3 0.08
30 21 0.54
ACGTcount: A:0.10, C:0.14, G:0.07, T:0.70
Consensus pattern (28 bp):
TTTTCACCTTTTTTTTAACTCGATTTTT
Found at i:37968649 original size:12 final size:12
Alignment explanation
Indices: 37968633--37968670 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
37968623 TTTTTGCTCG
37968633 ATTTTTTTTTCA
1 ATTTTTTTTTCA
* *
37968645 CTTTTTTTTTGA
1 ATTTTTTTTTCA
37968657 ATTTTTTTTTCA
1 ATTTTTTTTTCA
37968669 AT
1 AT
37968671 CAATTTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.16, C:0.08, G:0.03, T:0.74
Consensus pattern (12 bp):
ATTTTTTTTTCA
Found at i:37970219 original size:20 final size:19
Alignment explanation
Indices: 37970196--37970260 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
37970186 AAGCTCAAAC
37970196 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
37970216 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
37970236 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
37970256 GAGCT
1 GAGCT
37970261 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:37970972 original size:20 final size:19
Alignment explanation
Indices: 37970949--37971013 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
37970939 AAGCTCAAAC
37970949 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
37970969 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
37970989 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
37971009 GAGCT
1 GAGCT
37971014 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:37973976 original size:22 final size:22
Alignment explanation
Indices: 37973948--37973991 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
37973938 TTTAGAACCA
37973948 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
37973970 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
37973992 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:37976871 original size:29 final size:29
Alignment explanation
Indices: 37976821--37976876 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
37976811 AAATCGTAGC
***
37976821 TTCGAAAAAAAAAAAGTTAAAAAAAAAGT
1 TTCGAAAAAAAAAAACCGAAAAAAAAAGT
*
37976850 TTCGAAAAAAAAAATCCGAAAAAAAAA
1 TTCGAAAAAAAAAAACCGAAAAAAAAA
37976877 AAGAAGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.70, C:0.07, G:0.09, T:0.14
Consensus pattern (29 bp):
TTCGAAAAAAAAAAACCGAAAAAAAAAGT
Found at i:37976900 original size:14 final size:13
Alignment explanation
Indices: 37976826--37976906 Score: 56
Period size: 14 Copynumber: 5.8 Consensus size: 13
37976816 GTAGCTTCGA
37976826 AAAAAAAAAAGTT-
1 AAAAAAAAAA-TTG
*
37976839 AAAAAAAAAGTTTCG
1 AAAAAAAAA-ATT-G
*
37976854 AAAAAAAAAATCCG
1 AAAAAAAAAAT-TG
**
37976868 AAAAAAAAAAAGAAG
1 -AAAAAAAAAA-TTG
37976883 AAAAAAAAAATTG
1 AAAAAAAAAATTG
37976896 CAAAAAAAAAA
1 -AAAAAAAAAA
37976907 AATTGCATAC
Statistics
Matches: 54, Mismatches: 7, Indels: 13
0.73 0.09 0.18
Matches are distributed among these distances:
13 12 0.22
14 22 0.41
15 20 0.37
ACGTcount: A:0.77, C:0.05, G:0.09, T:0.10
Consensus pattern (13 bp):
AAAAAAAAAATTG
Found at i:37976913 original size:16 final size:15
Alignment explanation
Indices: 37976854--37976909 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
37976844 AAAAGTTTCG
* *
37976854 AAAAAAAAAATCCGA
1 AAAAAAAAAATGCAA
37976869 AAAAAAAAAA-G-AA
1 AAAAAAAAAATGCAA
37976882 GAAAAAAAAAATTGCAA
1 -AAAAAAAAAA-TGCAA
37976899 AAAAAAAAAAT
1 AAAAAAAAAAT
37976910 TGCATACGGT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
13 1 0.03
14 10 0.29
15 11 0.31
16 11 0.31
17 2 0.06
ACGTcount: A:0.80, C:0.05, G:0.07, T:0.07
Consensus pattern (15 bp):
AAAAAAAAAATGCAA
Found at i:37976960 original size:1 final size:1
Alignment explanation
Indices: 37976954--37976986 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
37976944 AAATATCCGT
37976954 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
37976987 GTCTGGAATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:37977729 original size:15 final size:15
Alignment explanation
Indices: 37977697--37977730 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
37977687 GTTCAACGAA
*
37977697 GAGGCCAACGCAACC
1 GAGGCCAACGAAACC
*
37977712 GAGGCCAACGAAATC
1 GAGGCCAACGAAACC
37977727 GAGG
1 GAGG
37977731 GAGGTTCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.32, T:0.03
Consensus pattern (15 bp):
GAGGCCAACGAAACC
Done.