Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 131 of 230
Found at i:38205425 original size:17 final size:18
Alignment explanation
Indices: 38205403--38205443 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
38205393 CGTTTCTTTT
38205403 TCTTTTGAATCACTC-TC
1 TCTTTTGAATCACTCATC
**
38205420 TCTTTTTTATCACTCATC
1 TCTTTTGAATCACTCATC
38205438 T-TTTTG
1 TCTTTTG
38205444 TTTTTCTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.15, C:0.24, G:0.05, T:0.56
Consensus pattern (18 bp):
TCTTTTGAATCACTCATC
Found at i:38205427 original size:24 final size:25
Alignment explanation
Indices: 38205372--38205427 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
38205362 ACAAACAAAT
* *
38205372 TCTTTTTTCATTTTCATCACTCGTT
1 TCTTTTTTCATTTTAATCACTCGTC
38205397 TC-TTTTTC-TTTTGAATCACTC-TC
1 TCTTTTTTCATTTT-AATCACTCGTC
38205420 TCTTTTTT
1 TCTTTTTT
38205428 ATCACTCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 7 0.26
24 18 0.67
25 2 0.07
ACGTcount: A:0.11, C:0.23, G:0.04, T:0.62
Consensus pattern (25 bp):
TCTTTTTTCATTTTAATCACTCGTC
Found at i:38209695 original size:12 final size:12
Alignment explanation
Indices: 38209680--38209710 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
38209670 TTCTTTTTGC
38209680 TTTTCAAAGGCT
1 TTTTCAAAGGCT
38209692 TTTTCAAAGGCT
1 TTTTCAAAGGCT
38209704 TTTTCAA
1 TTTTCAA
38209711 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:38209817 original size:37 final size:37
Alignment explanation
Indices: 38209760--38209830 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
38209750 CTTGCCTCTC
38209760 TTTTCTTTTTATTTCATTTTCATTT-TCTTCTCTTGCT
1 TTTTCTTTTTATTTCATTTTC-TTTGTCTTCTCTTGCT
* *
38209797 TTTTCTTTTTCTTTTC-TTTTCTTTGTTTTCTCTT
1 TTTTCTTTTT-ATTTCATTTTCTTTGTCTTCTCTT
38209831 TACAAGAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
36 3 0.10
37 23 0.77
38 4 0.13
ACGTcount: A:0.04, C:0.18, G:0.03, T:0.75
Consensus pattern (37 bp):
TTTTCTTTTTATTTCATTTTCTTTGTCTTCTCTTGCT
Found at i:38209831 original size:16 final size:16
Alignment explanation
Indices: 38209756--38209816 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
38209746 GCCTCTTGCC
*
38209756 TCTCTTTTCTTTTTAT
1 TCTCTTTTCTTTTTCT
*
38209772 T-TCATTTTCATTTTCT
1 TCTC-TTTTCTTTTTCT
*
38209788 TCTC-TTGCTTTTTCTT
1 TCTCTTTTCTTTTTC-T
*
38209804 TTTCTTTTCTTTT
1 TCTCTTTTCTTTT
38209817 CTTTGTTTTC
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
15 10 0.29
16 16 0.46
17 9 0.26
ACGTcount: A:0.05, C:0.20, G:0.02, T:0.74
Consensus pattern (16 bp):
TCTCTTTTCTTTTTCT
Found at i:38212431 original size:30 final size:29
Alignment explanation
Indices: 38212397--38212493 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 29
38212387 TAAACTAAAA
38212397 TGAGCTAAGTTTCAGCTCGTGAGCTAAAGT
1 TGAGCTAAGTTT-AGCTCGTGAGCTAAAGT
* * * * * *
38212427 TGAGCTGAGGCTAAGCTCCTAAGCTGAAGT
1 TGAGCT-AAGTTTAGCTCGTGAGCTAAAGT
38212457 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAA-GTTTAGCTCGTGAGCTAAAGT
38212486 ATGAGCTA
1 -TGAGCTA
38212494 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
29 2 0.04
30 47 0.90
31 3 0.06
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
TGAGCTAAGTTTAGCTCGTGAGCTAAAGT
Found at i:38213073 original size:11 final size:11
Alignment explanation
Indices: 38213057--38213086 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
38213047 AAAGAAATTG
38213057 AAAGAAAACAA
1 AAAGAAAACAA
38213068 AAAGAAAACAA
1 AAAGAAAACAA
38213079 AAAGAAAA
1 AAAGAAAA
38213087 AGAAATTGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAGAAAACAA
Found at i:38213088 original size:6 final size:6
Alignment explanation
Indices: 38213057--38213161 Score: 61
Period size: 6 Copynumber: 17.3 Consensus size: 6
38213047 AAAGAAATTG
* * ** *
38213057 AAAG-A AAACAA AAAG-A AAACAA AAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
38213103 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
38213154 AAAGAA AA
1 AAAGAA AA
38213162 TGCGAAAAAA
Statistics
Matches: 71, Mismatches: 24, Indels: 9
0.68 0.23 0.09
Matches are distributed among these distances:
5 7 0.10
6 53 0.75
7 7 0.10
8 4 0.06
ACGTcount: A:0.72, C:0.04, G:0.17, T:0.07
Consensus pattern (6 bp):
AAAGAA
Found at i:38213117 original size:18 final size:18
Alignment explanation
Indices: 38213061--38213118 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
38213051 AAATTGAAAG
* *
38213061 AAAACAAAAAGAAAAC-A
1 AAAAGAAAAAGAAATCGA
* *
38213078 AAAAGAAAAAGAAATTGC
1 AAAAGAAAAAGAAATCGA
38213096 AAAAGAAAAAGAAATCGA
1 AAAAGAAAAAGAAATCGA
38213114 AAAAG
1 AAAAG
38213119 TGAGAGAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
17 13 0.38
18 21 0.62
ACGTcount: A:0.74, C:0.07, G:0.14, T:0.05
Consensus pattern (18 bp):
AAAAGAAAAAGAAATCGA
Found at i:38213145 original size:14 final size:12
Alignment explanation
Indices: 38213045--38213163 Score: 63
Period size: 12 Copynumber: 10.0 Consensus size: 12
38213035 AAAGAGATTA
*
38213045 AAAAAGAAATTG
1 AAAAAGAAAATG
*
38213057 --AAAGAAAA-C
1 AAAAAGAAAATG
*
38213066 AAAAAGAAAA-C
1 AAAAAGAAAATG
*
38213077 AAAAAGAAAAAG
1 AAAAAGAAAATG
**
38213089 AAATTGCAAAA-G
1 AAAAAG-AAAATG
38213101 AAAAAG-AAATCG
1 AAAAAGAAAAT-G
* *
38213113 AAAAAGTGAGA-G
1 AAAAAG-AAAATG
38213125 AAAAAGAAAATG
1 AAAAAGAAAATG
38213137 AAGAAAAGAAAATTG
1 -A-AAAAGAAAA-TG
38213152 AAAAAGAAAATG
1 AAAAAGAAAATG
38213164 CGAAAAAAGA
Statistics
Matches: 85, Mismatches: 10, Indels: 24
0.71 0.08 0.20
Matches are distributed among these distances:
10 10 0.12
11 21 0.25
12 26 0.31
13 14 0.16
14 12 0.14
15 2 0.02
ACGTcount: A:0.71, C:0.03, G:0.18, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:38213154 original size:27 final size:26
Alignment explanation
Indices: 38213100--38213181 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
38213090 AATTGCAAAA
* *
38213100 GAAAAAG-AAATCGAAAAAGTGAGA--
1 GAAAAAGAAAATCGAAAAA-AGAAATT
38213124 GAAAAAGAAAAT-GAAGAAAAGAAAATT
1 GAAAAAGAAAATCGAA-AAAAG-AAATT
38213151 GAAAAAGAAAATGCGAAAAAAGAAATT
1 GAAAAAGAAAAT-CGAAAAAAGAAATT
38213178 GAAA
1 GAAA
38213182 GAGAGCTTGA
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
24 11 0.22
25 9 0.18
27 21 0.43
28 5 0.10
29 3 0.06
ACGTcount: A:0.67, C:0.02, G:0.21, T:0.10
Consensus pattern (26 bp):
GAAAAAGAAAATCGAAAAAAGAAATT
Found at i:38213168 original size:14 final size:13
Alignment explanation
Indices: 38213124--38213175 Score: 59
Period size: 14 Copynumber: 3.8 Consensus size: 13
38213114 AAAAGTGAGA
38213124 GAAAAAGAAAATG
1 GAAAAAGAAAATG
* *
38213137 AAGAAAAGAAAATT
1 GA-AAAAGAAAATG
38213151 GAAAAAGAAAATG
1 GAAAAAGAAAATG
38213164 CGAAAAAAGAAA
1 -G-AAAAAGAAA
38213176 TTGAAAGAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 11 0.34
14 12 0.38
15 9 0.28
ACGTcount: A:0.71, C:0.02, G:0.19, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATG
Found at i:38213170 original size:15 final size:13
Alignment explanation
Indices: 38213125--38213181 Score: 62
Period size: 13 Copynumber: 4.2 Consensus size: 13
38213115 AAAGTGAGAG
38213125 AAAAAGAAAATGA
1 AAAAAGAAAATGA
38213138 AGAAAAGAAAATTG-
1 A-AAAAGAAAA-TGA
38213152 AAAAAGAAAATGCGA
1 AAAAAGAAAAT--GA
*
38213167 AAAAAGAAATTGA
1 AAAAAGAAAATGA
38213180 AA
1 AA
38213182 GAGAGCTTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
12 1 0.03
13 14 0.37
14 11 0.29
15 12 0.32
ACGTcount: A:0.70, C:0.02, G:0.18, T:0.11
Consensus pattern (13 bp):
AAAAAGAAAATGA
Found at i:38215037 original size:20 final size:20
Alignment explanation
Indices: 38215014--38215067 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
38215004 AGTTTTTCCC
*
38215014 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
38215034 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
38215054 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
38215068 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:38215049 original size:30 final size:30
Alignment explanation
Indices: 38215014--38215087 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
38215004 AGTTTTTCCC
38215014 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
38215044 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
38215074 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
38215088 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:38215077 original size:20 final size:20
Alignment explanation
Indices: 38215014--38215078 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
38215004 AGTTTTTCCC
* * * *
38215014 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
38215034 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
38215053 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
38215074 AGCTC
1 AGCTC
38215079 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:38218212 original size:18 final size:18
Alignment explanation
Indices: 38218174--38218215 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
38218164 GCGAAAATAC
* *
38218174 AAAAGAAAAGAAAAATGA
1 AAAAAAAAAGAAAAATCA
*
38218192 AAAAAAAAAGAAAATTCA
1 AAAAAAAAAGAAAAATCA
38218210 AAAAAA
1 AAAAAA
38218216 GAGAATGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.81, C:0.02, G:0.10, T:0.07
Consensus pattern (18 bp):
AAAAAAAAAGAAAAATCA
Found at i:38224140 original size:17 final size:17
Alignment explanation
Indices: 38224093--38224146 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
38224083 AGAAAAGAGC
* *
38224093 GAAAATACAAAAGAAAA
1 GAAAATTCAAAAAAAAA
* * *
38224110 GAAAAATGATAAAAAAA
1 GAAAATTCAAAAAAAAA
*
38224127 GAAAATTCAAAAAAAGA
1 GAAAATTCAAAAAAAAA
38224144 GAA
1 GAA
38224147 TGAAAAGAGA
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.74, C:0.04, G:0.13, T:0.09
Consensus pattern (17 bp):
GAAAATTCAAAAAAAAA
Found at i:38228643 original size:21 final size:21
Alignment explanation
Indices: 38228598--38228660 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
38228588 TTTCAACCAT
*
38228598 TACCAATTCGTACCAAATACCA
1 TACCAATTCGTACC-AATTCCA
*
38228620 TACCATTTCGTACCAATTCCA
1 TACCAATTCGTACCAATTCCA
* * *
38228641 TACTACTTCGAACCAATTCC
1 TACCAATTCGTACCAATTCC
38228661 CAAATACCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 23 0.64
22 13 0.36
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.29
Consensus pattern (21 bp):
TACCAATTCGTACCAATTCCA
Found at i:38232733 original size:10 final size:10
Alignment explanation
Indices: 38232718--38232779 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
38232708 TTTGAACCGT
*
38232718 TACCAATTCG
1 TACCAATTCA
*
38232728 TACCAAATACCA
1 TACC-AAT-TCA
*
38232740 TACCATTTCA
1 TACCAATTCA
38232750 TACCAATTCCA
1 TACCAATT-CA
* *
38232761 TACCATTTCG
1 TACCAATTCA
38232771 TACCAATTC
1 TACCAATTC
38232780 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:38232763 original size:21 final size:21
Alignment explanation
Indices: 38232718--38232780 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
38232708 TTTGAACCGT
* *
38232718 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
38232740 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
38232761 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
38232781 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:38234926 original size:20 final size:20
Alignment explanation
Indices: 38234880--38234926 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
38234870 AGCTCGTTTC
*
38234880 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
38234900 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
38234920 CAGCTCA
1 CAGCTCA
38234927 ATTGATGCGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:38236420 original size:20 final size:19
Alignment explanation
Indices: 38236397--38236461 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
38236387 AAGCTCAAAC
38236397 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
38236417 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
38236437 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
38236457 GAGCT
1 GAGCT
38236462 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:38237731 original size:17 final size:18
Alignment explanation
Indices: 38237709--38237742 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38237699 ACAACACTCC
38237709 TTTCTT-CTTCACTCTCG
1 TTTCTTCCTTCACTCTCG
*
38237726 TTTCTTCCTTCAGTCTC
1 TTTCTTCCTTCACTCTC
38237743 ACTCTCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.06, C:0.35, G:0.06, T:0.53
Consensus pattern (18 bp):
TTTCTTCCTTCACTCTCG
Found at i:38238811 original size:15 final size:15
Alignment explanation
Indices: 38238775--38238815 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
38238765 TTTTTAACTT
38238775 GATTTTTTTTTGCTC
1 GATTTTTTTTTGCTC
38238790 -ACCTTTTTTTTTGCTC
1 GA--TTTTTTTTTGCTC
38238806 GATTTTTTTT
1 GATTTTTTTT
38238816 CACTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 1 0.04
15 8 0.35
16 13 0.57
17 1 0.04
ACGTcount: A:0.07, C:0.15, G:0.10, T:0.68
Consensus pattern (15 bp):
GATTTTTTTTTGCTC
Found at i:38238824 original size:13 final size:13
Alignment explanation
Indices: 38238808--38238880 Score: 69
Period size: 12 Copynumber: 5.5 Consensus size: 13
38238798 TTTTGCTCGA
*
38238808 TTTTTTTTC-ACT
1 TTTTTTTTCAATT
*
38238820 TTTTTTTTGAATT
1 TTTTTTTTCAATT
38238833 TTTTTTTTCAATCAAT
1 TTTTTTTTCAAT---T
38238849 TTTTTTTTCGAATT
1 TTTTTTTTC-AATT
*
38238863 TTTTTTTT-GATT
1 TTTTTTTTCAATT
38238875 TTTTTT
1 TTTTTT
38238881 GTTACTCCAA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
12 17 0.33
13 13 0.25
14 9 0.17
16 10 0.19
17 3 0.06
ACGTcount: A:0.14, C:0.07, G:0.04, T:0.75
Consensus pattern (13 bp):
TTTTTTTTCAATT
Found at i:38240522 original size:20 final size:19
Alignment explanation
Indices: 38240499--38240563 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
38240489 AAGCTCAAAC
38240499 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
38240519 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
38240539 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
38240559 GAGCT
1 GAGCT
38240564 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:38242808 original size:40 final size:40
Alignment explanation
Indices: 38242725--38243104 Score: 529
Period size: 40 Copynumber: 9.6 Consensus size: 40
38242715 TTGAATGCTG
* * * * * *
38242725 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
38242765 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
38242805 TCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATT-AA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
38242843 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
38242883 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
38242923 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
38242963 TCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
38243002 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
38243042 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
38243081 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
38243105 TGAACGAGGA
Statistics
Matches: 316, Mismatches: 19, Indels: 11
0.91 0.05 0.03
Matches are distributed among these distances:
38 14 0.04
39 117 0.37
40 177 0.56
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:38242979 original size:79 final size:80
Alignment explanation
Indices: 38242725--38243104 Score: 529
Period size: 79 Copynumber: 4.8 Consensus size: 80
38242715 TTGAATGCTG
* * * * * * * *
38242725 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * *
38242788 TTGTGCGAGATACTAAA
64 TCGTGCGAGTTATTAAA
38242805 TCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATT-AATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
38242868 GTGCGAGTTATTAAA
66 GTGCGAGTTATTAAA
38242883 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
38242948 GTGCGAGTTATTAAA
66 GTGCGAGTTATTAAA
*
38242963 TCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
38243027 GTGCGAGTTGTTAAA
66 GTGCGAGTTATTAAA
* * * * * *
38243042 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
38243105 TGAACGAGGA
Statistics
Matches: 275, Mismatches: 20, Indels: 11
0.90 0.07 0.04
Matches are distributed among these distances:
77 1 0.00
78 46 0.17
79 146 0.53
80 82 0.30
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATTAAA
Found at i:38242992 original size:119 final size:120
Alignment explanation
Indices: 38242725--38243104 Score: 529
Period size: 119 Copynumber: 3.2 Consensus size: 120
38242715 TTGAATGCTG
* * * * * * * *
38242725 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * *
38242788 TTGTGCGAGATACTAAATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATT-AA
64 TCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
38242843 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
38242908 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
38242963 TCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
* * * *
38243027 GTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
66 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
38243081 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
38243105 TGAACGAGGA
Statistics
Matches: 238, Mismatches: 19, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
117 1 0.00
118 94 0.39
119 129 0.54
120 14 0.06
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:38250844 original size:40 final size:39
Alignment explanation
Indices: 38250800--38251087 Score: 325
Period size: 40 Copynumber: 7.6 Consensus size: 39
38250790 AAGTGAATAT
* * * * *
38250800 ATCCGGATTAAGATCCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCGAAGGCATTCGTGCGAGTTATTAA
38250840 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAA
38250880 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
38250919 ATCC-GGTTAAGTCCG-AGGCATTCGTGC--G-T-TT-A
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
*
38250951 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAA
38250991 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TT-A
1 ATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAA
* * *
38251029 AT-C-GG-TATGTCCGAA-GCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
* * *
38251063 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGT-CCGAAGGCATT
38251088 TGAACGAGGA
Statistics
Matches: 223, Mismatches: 9, Indels: 33
0.84 0.03 0.12
Matches are distributed among these distances:
32 13 0.06
33 16 0.07
34 11 0.05
35 18 0.08
36 4 0.02
37 19 0.09
38 20 0.09
39 40 0.18
40 82 0.37
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAA
Found at i:38251057 original size:72 final size:77
Alignment explanation
Indices: 38250800--38251087 Score: 355
Period size: 72 Copynumber: 3.8 Consensus size: 77
38250790 AAGTGAATAT
* * * * *
38250800 ATCCGGATTAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAG-TCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
38250865 CGTGCGAGTTATTAA
65 CGTGCGAGTT-TT-A
38250880 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCC-GGTTAAGT-CCG-AGGCATTC
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
38250942 GTGC--G-TTTA
66 GTGCGAGTTTTA
*
38250951 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
38251016 CGTGCGAGTTTTA
65 CGTGCGAGTTTTA
* * * * * *
38251029 AT-C-GG-TATGTCCGAA-GCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
38251088 TGAACGAGGA
Statistics
Matches: 188, Mismatches: 13, Indels: 22
0.84 0.06 0.10
Matches are distributed among these distances:
71 14 0.07
72 64 0.34
73 14 0.07
74 9 0.05
75 16 0.09
76 14 0.07
77 5 0.03
78 14 0.07
79 27 0.14
80 11 0.06
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (77 bp):
ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTTTA
Found at i:38251107 original size:112 final size:112
Alignment explanation
Indices: 38250837--38251122 Score: 289
Period size: 111 Copynumber: 2.6 Consensus size: 112
38250827 TGCGAGATAC
* ** * *
38250837 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TTAAATCCGGGTTAAGT-CCGAAGG
1 TAAA-CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCTAAATCCGGGTTAAGTCCCGAAGG
* *
38250900 CATTCGTGCGAGTTATTAAATCCGGTTAAGTCCGAGGCATTCGTGCGTT
64 CATTCGTGCGAGTTATTAAATCCGGTTAAGTCCGAAGCATTCGTGAGTT
* * ** ** *
38250949 TAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCA
1 TAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAATCCGGGTTAAGTCCCGAAGGCA
* *
38251014 TTCGTGCGAGTT-TT-AAT-CGG-TATGTCCGAAGCATTGTGTGAGTT
66 TTCGTGCGAGTTATTAAATCCGGTTAAGTCCGAAGCATT-CGTGAGTT
* * * *
38251058 ACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATCCCGAAG
1 --T-AAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAATCCGGGTTAAGTCCCGAAG
38251122 G
63 G
38251123 TACGTGATTT
Statistics
Matches: 151, Mismatches: 17, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
108 13 0.09
109 9 0.06
110 4 0.03
111 66 0.44
112 59 0.39
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (112 bp):
TAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAATCCGGGTTAAGTCCCGAAGGCA
TTCGTGCGAGTTATTAAATCCGGTTAAGTCCGAAGCATTCGTGAGTT
Found at i:38251111 original size:151 final size:149
Alignment explanation
Indices: 38250797--38251122 Score: 344
Period size: 151 Copynumber: 2.2 Consensus size: 149
38250787 GCTAAGTGAA
* *
38250797 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGG-TTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
* * *
38250861 CATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGT
64 CATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTACTAAAACCGGC
* *
38250926 TAAGTCCGAGGCATTCGTGCG
129 TAAGTCCGAGGCATTCGGGAG
* * **
38250947 TTTAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 TAT-ATCC-GGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
* *
38251012 CATTCGTGCGAGTT-TT-AAT-C-GG-TATGTCCGAA-GCATT-GTGTGAGTTACTAAAACCGGG
64 CATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTACTAAAACC-GG
*
38251070 CTATGTCCCGAAGGCATTTGAACGAGGAG
128 CTAAGT-CCG-AGGCA-TT---CG-GGAG
*
38251099 CTATATCCGGTTAAATCCCGAAGG
1 -TATATCCGGTTAAGTCCCGAAGG
38251123 TACGTGATTT
Statistics
Matches: 148, Mismatches: 16, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
144 15 0.10
145 11 0.07
146 12 0.08
147 7 0.05
148 3 0.02
149 3 0.02
150 5 0.03
151 82 0.55
152 8 0.05
153 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (149 bp):
TATATCCGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCA
TTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTACTAAAACCGGCTA
AGTCCGAGGCATTCGGGAG
Found at i:38256306 original size:30 final size:30
Alignment explanation
Indices: 38256272--38256368 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
38256262 TAAACTAAAA
*
38256272 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
38256302 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
38256332 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
38256361 ATGAGCTA
1 -TGAGCTA
38256369 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:38258484 original size:12 final size:12
Alignment explanation
Indices: 38258469--38258498 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
38258459 TTCTTTTTGC
38258469 TTTCAAAGGCTT
1 TTTCAAAGGCTT
38258481 TTTCAAAGGCTT
1 TTTCAAAGGCTT
38258493 TTTCAA
1 TTTCAA
38258499 GTTCTCTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (12 bp):
TTTCAAAGGCTT
Found at i:38258568 original size:5 final size:5
Alignment explanation
Indices: 38258560--38258603 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
38258550 CTTTTATTCA
*
38258560 TTTTC TTTT- TCTTC TTTTGC TTTTTC TTTTC TTTTC TTTTC TTT
1 TTTTC TTTTC TTTTC TTTT-C -TTTTC TTTTC TTTTC TTTTC TTT
38258604 GTTTTCTCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 3 0.09
5 25 0.74
6 2 0.06
7 4 0.12
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:38258571 original size:20 final size:19
Alignment explanation
Indices: 38258544--38258594 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
38258534 GCCTCTTGCC
38258544 TCTTTTCTTTTATT-CATTT
1 TCTTTTCTTTT-TTGCATTT
*
38258563 TCTTTTTCTTCTTTTGCTTTT
1 TC-TTTTCTT-TTTTGCATTT
38258584 TCTTTTCTTTT
1 TCTTTTCTTTT
38258595 CTTTTCTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 4 0.14
20 16 0.57
21 8 0.29
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.76
Consensus pattern (19 bp):
TCTTTTCTTTTTTGCATTT
Found at i:38258582 original size:15 final size:14
Alignment explanation
Indices: 38258544--38258599 Score: 60
Period size: 15 Copynumber: 3.8 Consensus size: 14
38258534 GCCTCTTGCC
*
38258544 TCTTTTC-TTTTAT
1 TCTTTTCTTTTTCT
38258557 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
38258572 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
38258589 TCTTTTCTTTT
1 TCTTTTCTTTT
38258600 CTTTGTTTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
13 2 0.05
14 9 0.24
15 14 0.38
16 5 0.14
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:38258604 original size:26 final size:26
Alignment explanation
Indices: 38258560--38258613 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
38258550 CTTTTATTCA
38258560 TTTTCTTTTTCTTCTTTTGCTTTT-TC
1 TTTTCTTTTTCTTCTTTTG-TTTTCTC
*
38258586 TTTTC-TTTTCTTTTCTTTGTTTTCTC
1 TTTTCTTTTTCTTCT-TTTGTTTTCTC
38258612 TT
1 TT
38258614 ACAAGAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.00, C:0.19, G:0.04, T:0.78
Consensus pattern (26 bp):
TTTTCTTTTTCTTCTTTTGTTTTCTC
Found at i:38260680 original size:14 final size:14
Alignment explanation
Indices: 38260655--38260691 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
38260645 TGTATTATAC
38260655 AAAAATC-AAAAAA
1 AAAAATCGAAAAAA
38260668 AAAAATTCGAAAAAA
1 AAAAA-TCGAAAAAA
38260683 AAAAATCGA
1 AAAAATCGA
38260692 TGAAAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.23
14 6 0.27
15 11 0.50
ACGTcount: A:0.76, C:0.08, G:0.05, T:0.11
Consensus pattern (14 bp):
AAAAATCGAAAAAA
Found at i:38275834 original size:33 final size:32
Alignment explanation
Indices: 38275785--38275846 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
38275775 AATCGAGTTC
38275785 ATAACGATTCATGTTCAAGAAAACTCGAGCCA
1 ATAACGATTCATGTTCAAGAAAACTCGAGCCA
*
38275817 ATAACAGATTCGA-GTTCAAGAAAATTCGAG
1 ATAAC-GATTC-ATGTTCAAGAAAACTCGAG
38275847 TTCGAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 5 0.19
33 21 0.78
34 1 0.04
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.23
Consensus pattern (32 bp):
ATAACGATTCATGTTCAAGAAAACTCGAGCCA
Found at i:38275856 original size:16 final size:16
Alignment explanation
Indices: 38275797--38275849 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
38275787 AACGATTCAT
*
38275797 GTTCAAGAAAACTCGA
1 GTTCAAGAAAATTCGA
* *
38275813 G-CCAATAACAGATTCGA
1 GTTCAAGAA-A-ATTCGA
38275830 GTTCAAGAAAATTCGA
1 GTTCAAGAAAATTCGA
38275846 GTTC
1 GTTC
38275850 GAAAAAACCT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 5 0.17
16 12 0.41
17 7 0.24
18 5 0.17
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.23
Consensus pattern (16 bp):
GTTCAAGAAAATTCGA
Found at i:38280529 original size:21 final size:21
Alignment explanation
Indices: 38280503--38280549 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
38280493 GGAAGTATCG
38280503 AGACTTCATGAACATG-TCTCA
1 AGACTTCATGAACA-GATCTCA
* *
38280524 AGACTTGATGAATAGATCTCA
1 AGACTTCATGAACAGATCTCA
38280545 AGACT
1 AGACT
38280550 ATGCTCCCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (21 bp):
AGACTTCATGAACAGATCTCA
Found at i:38281956 original size:25 final size:26
Alignment explanation
Indices: 38281913--38281965 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
38281903 CCCGCCCATA
*
38281913 TTATTTTTTAAAAATATATTTTATAT
1 TTATTTTTTAAAAATATATTTAATAT
**
38281939 TTATTTTTTAATTA-ATATTTAATAT
1 TTATTTTTTAAAAATATATTTAATAT
38281964 TT
1 TT
38281966 TTATATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (26 bp):
TTATTTTTTAAAAATATATTTAATAT
Found at i:38286669 original size:43 final size:44
Alignment explanation
Indices: 38286610--38286701 Score: 177
Period size: 43 Copynumber: 2.1 Consensus size: 44
38286600 CTTGAGGTTC
38286610 CTGTCTTGATTTCATAGATTAAAGCCGCTTCATGAGCCTTAGGA
1 CTGTCTTGATTTCATAGATTAAAGCCGCTTCATGAGCCTTAGGA
38286654 CTGTC-TGATTTCATAGATTAAAGCCGCTTCATGAGCCTTAGGA
1 CTGTCTTGATTTCATAGATTAAAGCCGCTTCATGAGCCTTAGGA
38286697 CTGTC
1 CTGTC
38286702 ATTGCTTAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 43 0.90
44 5 0.10
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.34
Consensus pattern (44 bp):
CTGTCTTGATTTCATAGATTAAAGCCGCTTCATGAGCCTTAGGA
Found at i:38299206 original size:9 final size:9
Alignment explanation
Indices: 38299188--38299245 Score: 89
Period size: 9 Copynumber: 6.4 Consensus size: 9
38299178 TTTGGTTAAA
38299188 AATTAACCG
1 AATTAACCG
*
38299197 AATTACCCG
1 AATTAACCG
38299206 AATTAACCG
1 AATTAACCG
38299215 AATTAACCG
1 AATTAACCG
* *
38299224 GATTACCCG
1 AATTAACCG
38299233 AATTAACCG
1 AATTAACCG
38299242 AATT
1 AATT
38299246 GAATCACTAC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:38299221 original size:27 final size:27
Alignment explanation
Indices: 38299188--38299245 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
38299178 TTTGGTTAAA
38299188 AATTAACCGAATTACCCGAATTAACCG
1 AATTAACCGAATTACCCGAATTAACCG
*
38299215 AATTAACCGGATTACCCGAATTAACCG
1 AATTAACCGAATTACCCGAATTAACCG
38299242 AATT
1 AATT
38299246 GAATCACTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (27 bp):
AATTAACCGAATTACCCGAATTAACCG
Found at i:38306336 original size:15 final size:17
Alignment explanation
Indices: 38306312--38306354 Score: 72
Period size: 15 Copynumber: 2.6 Consensus size: 17
38306302 GAACAAGGTA
38306312 TAACATTTTACAAGTC-
1 TAACATTTTACAAGTCT
38306328 TAA-ATTTTACAAGTCT
1 TAACATTTTACAAGTCT
38306344 TAACATTTTAC
1 TAACATTTTAC
38306355 TTAAGCCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.48
16 6 0.24
17 7 0.28
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (17 bp):
TAACATTTTACAAGTCT
Found at i:38310027 original size:82 final size:81
Alignment explanation
Indices: 38309911--38310061 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 81
38309901 AAATTGTACA
* * * *
38309911 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
38309975 TGCGAAATGACCATGCG
65 TGCGAAATGACCATGCG
** *
38309992 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
38310057 TGCGA
65 TGCGA
38310062 GTTGATTGTA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 18 0.30
82 43 0.70
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGACCATGCG
Found at i:38310068 original size:27 final size:27
Alignment explanation
Indices: 38309911--38310066 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
38309901 AAATTGTACA
*
38309911 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
38309938 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* * *
38309965 GCACTAAGTGTGCGAAATGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
38309992 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
38310020 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
38310047 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
38310067 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:38310077 original size:27 final size:27
Alignment explanation
Indices: 38309910--38310087 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
38309900 TAAATTGTAC
*
38309910 AGCACTAAGTGTGCGA-TTCGACTATGT
1 AGCACTAAGTGTGCGAGTT-GATTATGT
* ** *
38309937 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
** ** *
38309963 ATGCACTAAGTGTGCGAAATGACCATGC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
38309991 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
38310019 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
38310046 GGCACTAAGTGTGCGAGTTGATTGTAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
38310073 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
38310088 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:38310078 original size:82 final size:81
Alignment explanation
Indices: 38309903--38310087 Score: 201
Period size: 82 Copynumber: 2.3 Consensus size: 81
38309893 GCGGGATTAA
* * * *
38309903 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
38309968 CTAAGTGTGCGAAATG
66 CTAAGTGTGCGAAATG
*** * * ** *
38309984 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
**
38310048 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAAATG
* *
38310066 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
38310088 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 21, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
81 21 0.26
82 60 0.74
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAAATG
Found at i:38316094 original size:8 final size:9
Alignment explanation
Indices: 38316069--38316166 Score: 56
Period size: 10 Copynumber: 10.1 Consensus size: 9
38316059 GCCCATTTTT
38316069 ATTTTAAAA
1 ATTTTAAAA
38316078 ATTTTTAAAA
1 A-TTTTAAAA
*
38316088 ATTTAAAAAA
1 ATTT-TAAAA
38316098 GTATTTTAAAA
1 --ATTTTAAAA
*
38316109 ATATTTTAAA
1 AT-TTTAAAA
*
38316119 A-TTAAAAA
1 ATTTTAAAA
*
38316127 ATTTAAAAAAA
1 ATTT--TAAAA
38316138 TATTTTAAAA
1 -ATTTTAAAA
*
38316148 ATATTTTAAA
1 AT-TTTAAAA
38316158 A-TTTAAAA
1 ATTTTAAAA
38316166 A
1 A
38316167 AATTAAAAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 21
0.71 0.08 0.21
Matches are distributed among these distances:
8 13 0.18
9 10 0.14
10 31 0.44
11 9 0.13
12 8 0.11
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:38316106 original size:31 final size:31
Alignment explanation
Indices: 38316068--38316169 Score: 105
Period size: 31 Copynumber: 3.0 Consensus size: 31
38316058 GGCCCATTTT
*
38316068 TATTTTAAAAATTTTTAAAAATTTAAAAAAG
1 TATTTTAAAAATTTTTAAAAATTTAAAAAAA
38316099 TATTTTAAAAATATTTTAAAATTAAAAAATTTAAAAAAA
1 TATTTT-AAAA-A-TTT----TT-AAAAATTTAAAAAAA
* *
38316138 TATTTTAAAAATATTTTAAAATTTAAAAAAA
1 TATTTTAAAAATTTTTAAAAATTTAAAAAAA
38316169 T
1 T
38316170 TAAAAAAAGT
Statistics
Matches: 60, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
31 21 0.35
32 6 0.10
33 1 0.02
34 3 0.05
36 2 0.03
37 1 0.02
38 6 0.10
39 20 0.33
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (31 bp):
TATTTTAAAAATTTTTAAAAATTTAAAAAAA
Found at i:38316132 original size:39 final size:39
Alignment explanation
Indices: 38316084--38316208 Score: 196
Period size: 39 Copynumber: 3.2 Consensus size: 39
38316074 AAAAATTTTT
38316084 AAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAATTA
1 AAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAATTA
*
38316123 AAAAATTTAAAAAAATATTTTAAAAATATTTTAAAATTTAA
1 AAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAA-TT-A
* * *
38316164 AAAAATTAAAAAAAGTATGTAAAAAATATTTTAAAATTA
1 AAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAATTA
38316203 AAAAAT
1 AAAAAT
38316209 AAATATATTT
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
39 42 0.53
40 4 0.05
41 33 0.42
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (39 bp):
AAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAATTA
Found at i:38316136 original size:17 final size:17
Alignment explanation
Indices: 38316103--38316135 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
38316093 AAAAAGTATT
*
38316103 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
38316120 TTAAAAA-ATTTAAAAA
1 TTAAAAATATTTAAAAA
38316136 AATATTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:38316199 original size:11 final size:11
Alignment explanation
Indices: 38316068--38316158 Score: 83
Period size: 11 Copynumber: 8.9 Consensus size: 11
38316058 GGCCCATTTT
38316068 TATTTTAAAAA
1 TATTTTAAAAA
38316079 T-TTTT-AAAA
1 TATTTTAAAAA
*
38316088 -ATTTAAAAAA
1 TATTTTAAAAA
38316098 GTATTTTAAAAA
1 -TATTTTAAAAA
38316110 TATTTT--AAA
1 TATTTTAAAAA
38316119 -A--TTAAAAA
1 TATTTTAAAAA
*
38316127 -ATTTAAAAAAA
1 TATTT-TAAAAA
38316138 TATTTTAAAAA
1 TATTTTAAAAA
38316149 TATTTTAAAA
1 TATTTTAAAA
38316159 TTTAAAAAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
6 2 0.03
8 5 0.08
9 10 0.15
10 9 0.14
11 27 0.41
12 13 0.20
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:38317392 original size:19 final size:19
Alignment explanation
Indices: 38317370--38317432 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
38317360 ATAAAACCTA
*
38317370 AAAAAAAAGTAAAAAAATT
1 AAAAAATAGTAAAAAAATT
**
38317389 AAAATTTA-TAAAAAAAATT
1 AAAAAATAGT-AAAAAAATT
* *
38317408 AAAAATTAGT-AAAATATT
1 AAAAAATAGTAAAAAAATT
38317426 AAAAAAT
1 AAAAAAT
38317433 TATAAACAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
18 14 0.39
19 21 0.58
20 1 0.03
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.25
Consensus pattern (19 bp):
AAAAAATAGTAAAAAAATT
Found at i:38317403 original size:20 final size:20
Alignment explanation
Indices: 38317380--38317421 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
38317370 AAAAAAAAGT
*
38317380 AAAAAAATTAAAATTTA-TA
1 AAAAAAATTAAAAATTAGTA
38317399 AAAAAAATTAAAAATTAGTA
1 AAAAAAATTAAAAATTAGTA
38317419 AAA
1 AAA
38317422 TATTAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (20 bp):
AAAAAAATTAAAAATTAGTA
Found at i:38317438 original size:28 final size:27
Alignment explanation
Indices: 38317399--38317452 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
38317389 AAAATTTATA
38317399 AAAAAAATTAAA-AATTAGTAAAATATT
1 AAAAAAATTAAACAATT-GTAAAATATT
* *
38317426 AAAAAATTATAAACAATTTTAAAATAT
1 AAAAAAAT-TAAACAATTGTAAAATAT
38317453 GTATTTTACC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 7 0.30
28 12 0.52
29 4 0.17
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (27 bp):
AAAAAAATTAAACAATTGTAAAATATT
Found at i:38320568 original size:35 final size:35
Alignment explanation
Indices: 38320529--38320606 Score: 129
Period size: 35 Copynumber: 2.2 Consensus size: 35
38320519 GTGTCACCTT
38320529 GAAGGACCTATATATCATTTACACGGTGTCGCCCC
1 GAAGGACCTATATATCATTTACACGGTGTCGCCCC
* **
38320564 GAAGGACCTATATATCATTTACATGGTGTCGCCTT
1 GAAGGACCTATATATCATTTACACGGTGTCGCCCC
38320599 GAAGGACC
1 GAAGGACC
38320607 AGTAGATACC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (35 bp):
GAAGGACCTATATATCATTTACACGGTGTCGCCCC
Found at i:38324833 original size:35 final size:35
Alignment explanation
Indices: 38324793--38324863 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
38324783 ATATATATGT
38324793 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
38324828 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
38324863 G
1 G
38324864 TGTATATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.34, C:0.11, G:0.32, T:0.23
Consensus pattern (35 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
Found at i:38324884 original size:49 final size:49
Alignment explanation
Indices: 38324828--38325170 Score: 536
Period size: 49 Copynumber: 7.1 Consensus size: 49
38324818 GAATGTGAAA
38324828 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
38324877 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
* *
38324926 GATAGGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
38324975 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGT
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
*
38325022 GATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGT
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
* *
38325069 GATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATAAGT
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
* * * * * * *
38325118 GACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGT
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
38325165 GATAAG
1 GATAAG
38325171 TCCCGAAGGG
Statistics
Matches: 273, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 98 0.36
48 1 0.00
49 174 0.64
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (49 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
Found at i:38325043 original size:96 final size:96
Alignment explanation
Indices: 38324828--38325170 Score: 541
Period size: 96 Copynumber: 3.6 Consensus size: 96
38324818 GAATGTGAAA
*
38324828 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 GATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
38324893 CGATGTGATGAATGTGAAAGTGTATATATATGT
66 CGATGTGATGAATGTGAAAGTG--TATATATGT
*
38324926 GATAGGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 GATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
38324991 CGATGTGATGAATGTGAAAGTGTATATATGT
66 CGATGTGATGAATGTGAAAGTGTATATATGT
38325022 GATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
1 GATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
*
38325085 CGATGTGATGAATGTGGAAGTGTATATATAAGT
66 CGATGTGATGAATGTGAAAGTGTATATAT--GT
* * * * * *
38325118 GACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
38325171 TCCCGAAGGG
Statistics
Matches: 231, Mismatches: 10, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
94 53 0.23
96 90 0.39
97 1 0.00
98 87 0.38
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (96 bp):
GATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTATATATGT
Found at i:38325345 original size:37 final size:37
Alignment explanation
Indices: 38325289--38325367 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
38325279 CCGAGCTCTA
* * *
38325289 AAGACCTGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
38325326 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
38325363 AAGAC
1 AAGAC
38325368 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:38334125 original size:103 final size:102
Alignment explanation
Indices: 38333946--38334302 Score: 545
Period size: 102 Copynumber: 3.5 Consensus size: 102
38333936 ATTGAATATA
* * *
38333946 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATCGGTGGTTTCTAAGTGCTGATCCCATCGTATT
1 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATT
38334011 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCTCCC
66 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTC-CCC
*
38334049 GAGGGGTTGCTAAGTGCTGATTCCCTTATTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATT
1 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATT
38334114 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCC
66 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCC
* * * * * *
38334151 GAGGGGTTGCTAAGTGTTGATTCACCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACTGCATC
1 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATT
*
38334216 TGAAATGTG-AAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATT-CCCC
* ** * *
38334253 AAGGGGTTGCTGTGTACTGATTCCCCGATTCATTGGTGGTTGCTAAGTGC
1 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGC
38334303 GGAATCCACC
Statistics
Matches: 234, Mismatches: 19, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
101 23 0.10
102 116 0.50
103 95 0.41
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (102 bp):
GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATT
TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCC
Found at i:38341701 original size:103 final size:103
Alignment explanation
Indices: 38341522--38341723 Score: 386
Period size: 103 Copynumber: 2.0 Consensus size: 103
38341512 ATTGAATATA
*
38341522 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATCGGTGGTTGTTAAGTGCTGATCCCACCGTATT
1 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATCGGTGGTTGCTAAGTGCTGATCCCACCGTATT
38341587 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCTCCC
66 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCTCCC
*
38341625 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATT
1 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATCGGTGGTTGCTAAGTGCTGATCCCACCGTATT
38341690 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTC
66 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTC
38341724 CACCGCATCT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 97 1.00
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.33
Consensus pattern (103 bp):
GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATCGGTGGTTGCTAAGTGCTGATCCCACCGTATT
TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCTCCC
Found at i:38341759 original size:42 final size:43
Alignment explanation
Indices: 38341662--38341766 Score: 167
Period size: 43 Copynumber: 2.5 Consensus size: 43
38341652 ATTCATTGGT
* * * *
38341662 GGTTGCTAAGTGCTGATCCCACCGTATTTTAAATGTGAAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAAGGG
38341705 GGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTG-AAGGG
1 GGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAAGGG
38341747 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
38341767 CCCAAGGGGT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 25 0.43
43 33 0.57
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (43 bp):
GGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAAGGG
Found at i:38341829 original size:145 final size:146
Alignment explanation
Indices: 38341559--38341830 Score: 413
Period size: 145 Copynumber: 1.9 Consensus size: 146
38341549 ATTCATCGGT
* * * * *
38341559 GGTTGTTAAGTGCTGATCCCACCGTATTTTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCTCC
1 GGTTGCTAAGTGCTGATCCCACCGCATCTGAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCC
* * * *
38341624 CGAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTAT
66 CAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTAGCTAAGTGCGGATCCCACCGTAT
38341689 TTTAAATGTGAAAGGG
131 TTTAAATGTGAAAGGG
*
38341705 GGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTG-AAGGGGGTTGCTAAGTGCTGATTCCCC
1 GGTTGCTAAGTGCTGATCCCACCGCATCTGAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCC
**
38341769 CAAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTAGCTAAGTGCGGAAT-CCACCG
66 CAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTAGCTAAGTGCGG-ATCCCACCG
38341831 ATAACGGTTA
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
145 79 0.70
146 34 0.30
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (146 bp):
GGTTGCTAAGTGCTGATCCCACCGCATCTGAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCC
CAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTAGCTAAGTGCGGATCCCACCGTAT
TTTAAATGTGAAAGGG
Found at i:38344021 original size:13 final size:13
Alignment explanation
Indices: 38344003--38344032 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
38343993 GAGAATGTAT
*
38344003 AAAACATATCTTG
1 AAAACATAACTTG
38344016 AAAACATAACTTG
1 AAAACATAACTTG
38344029 AAAA
1 AAAA
38344033 TAGAGTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.13, G:0.07, T:0.23
Consensus pattern (13 bp):
AAAACATAACTTG
Found at i:38347365 original size:41 final size:41
Alignment explanation
Indices: 38347256--38347366 Score: 159
Period size: 41 Copynumber: 2.7 Consensus size: 41
38347246 TTTAACATAT
* * *
38347256 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCATA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
** *
38347297 TCACCGGCAAGTAGCCTGCTAGGTTTATAACCTGATTCCGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
*
38347338 TCACCGGCACTTAGCCTGCTAGATTTATA
1 TCACCGGCACTTAGCCTGCTAGGTTTATA
38347367 GTCTGAAAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
Found at i:38370092 original size:41 final size:41
Alignment explanation
Indices: 38369983--38370093 Score: 150
Period size: 41 Copynumber: 2.7 Consensus size: 41
38369973 TTTAACATAT
* * * *
38369983 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCATA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTAATTCAGA
* * *
38370024 TCACCAGCACGTAGCCTGCTAGGTTTATAACCTAATTCCGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTAATTCAGA
*
38370065 TCACCGGCACTTAGCCTGCTAGATTTATA
1 TCACCGGCACTTAGCCTGCTAGGTTTATA
38370094 GTCTGAAAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGTTTATAACCTAATTCAGA
Found at i:38370371 original size:26 final size:25
Alignment explanation
Indices: 38370317--38370372 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
38370307 AAACCTTAAA
*
38370317 CATATATATATACATATACATTTGAC
1 CATATATATATACATATACAATT-AC
*
38370343 CATATATATATATCAATATATAATT-C
1 CATATATATATA-C-ATATACAATTAC
38370369 CATA
1 CATA
38370373 CCTAATTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 17 0.65
27 1 0.04
28 8 0.31
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (25 bp):
CATATATATATACATATACAATTAC
Found at i:38372668 original size:18 final size:18
Alignment explanation
Indices: 38372647--38372710 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
38372637 AACAGCATGT
*
38372647 GAAAAAGAAAAAGAAAAA
1 GAAAAAGAAAAAGAAAGA
** *
38372665 GAAATTGCAAAAGAAAGA
1 GAAAAAGAAAAAGAAAGA
**
38372683 GAAATAA-AAAAAGTGAGA
1 GAAA-AAGAAAAAGAAAGA
38372701 GAAAAAGAAA
1 GAAAAAGAAA
38372711 TCAAATAAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
17 2 0.06
18 33 0.94
ACGTcount: A:0.72, C:0.02, G:0.20, T:0.06
Consensus pattern (18 bp):
GAAAAAGAAAAAGAAAGA
Found at i:38373163 original size:16 final size:15
Alignment explanation
Indices: 38373144--38373173 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
38373134 AGTATCAATT
38373144 TTTGATTGGTGATGAC
1 TTTGATTGG-GATGAC
38373160 TTTGATTGGGATGA
1 TTTGATTGGGATGA
38373174 TGGTTTGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.20, C:0.03, G:0.33, T:0.43
Consensus pattern (15 bp):
TTTGATTGGGATGAC
Found at i:38378556 original size:15 final size:16
Alignment explanation
Indices: 38378530--38378561 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
38378520 ATATTCGCTG
38378530 AAGAACATAAAAATAA
1 AAGAACATAAAAATAA
38378546 AAGAA-ATAAAAATAA
1 AAGAACATAAAAATAA
38378561 A
1 A
38378562 CCTAAAGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.78, C:0.03, G:0.06, T:0.12
Consensus pattern (16 bp):
AAGAACATAAAAATAA
Found at i:38381523 original size:12 final size:12
Alignment explanation
Indices: 38381506--38381535 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
38381496 CCACACATGT
38381506 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
38381518 CCGTGTGCTAGG
1 CCGTGTGCCAGG
38381530 CCGTGT
1 CCGTGT
38381536 AACTGCCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.30, G:0.40, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:38388892 original size:27 final size:26
Alignment explanation
Indices: 38388831--38388903 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
38388821 TCAAATTTGG
* *
38388831 CTGGCAAACCCCAATTCGCAACTCAA
1 CTGGCGAACCCCAACTCGCAACTCAA
*
38388857 CTGACGAACCCCAACTCGCCAAAC-CAA
1 CTGGCGAACCCCAACTCG-C-AACTCAA
*
38388884 CTGGCGAA-CCCAACTTGCAA
1 CTGGCGAACCCCAACTCGCAA
38388904 TGAATCTGGT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
24 2 0.05
25 1 0.03
26 23 0.57
27 11 0.28
28 3 0.08
ACGTcount: A:0.34, C:0.40, G:0.14, T:0.12
Consensus pattern (26 bp):
CTGGCGAACCCCAACTCGCAACTCAA
Found at i:38391721 original size:31 final size:32
Alignment explanation
Indices: 38391683--38391745 Score: 110
Period size: 31 Copynumber: 2.0 Consensus size: 32
38391673 TTGTTTCAAA
*
38391683 GGTTTGGAAAGATGAGAAAAACAA-TTTCTCT
1 GGTTTGGAAAGATGAGAAAAAAAATTTTCTCT
38391714 GGTTTGGAAAGATGAGAAAAAAAATTTTCTCT
1 GGTTTGGAAAGATGAGAAAAAAAATTTTCTCT
38391746 TCCCATCCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 23 0.77
32 7 0.23
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (32 bp):
GGTTTGGAAAGATGAGAAAAAAAATTTTCTCT
Found at i:38393667 original size:35 final size:35
Alignment explanation
Indices: 38393588--38393670 Score: 96
Period size: 35 Copynumber: 2.4 Consensus size: 35
38393578 AATGGCTATC
* *
38393588 TACTGGCTCTTCAGAGCGACACCGCGTAAACAGTA
1 TACTGGCTCTTCAGAGCGACACCACGAAAACAGTA
** * *
38393623 TACAAGCTCTTCAGAGCGACACCAC-AAAAGATGTT
1 TACTGGCTCTTCAGAGCGACACCACGAAAACA-GTA
38393658 TACTGGCTCTTCA
1 TACTGGCTCTTCA
38393671 AAATCTAAAG
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
34 4 0.10
35 35 0.90
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (35 bp):
TACTGGCTCTTCAGAGCGACACCACGAAAACAGTA
Found at i:38394718 original size:25 final size:26
Alignment explanation
Indices: 38394679--38394737 Score: 86
Period size: 25 Copynumber: 2.3 Consensus size: 26
38394669 GACAGTAAAC
*
38394679 GCATGATTCTATATGATGCCTTTGTG
1 GCATGATTCTATATGATGCCTTTGTA
*
38394705 GCATG-TTCTGTATGATGCCTTTGTA
1 GCATGATTCTATATGATGCCTTTGTA
38394730 GCAT-ATTC
1 GCATGATTC
38394738 CATAAGTTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 25 0.83
26 5 0.17
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.42
Consensus pattern (26 bp):
GCATGATTCTATATGATGCCTTTGTA
Found at i:38396681 original size:27 final size:26
Alignment explanation
Indices: 38396581--38396681 Score: 96
Period size: 27 Copynumber: 3.8 Consensus size: 26
38396571 TAATAACGCA
**
38396581 GCAGAGCTGCCAGT-ACAGTATATGTG
1 GCAGAGCCACCAGTAACAGTAT-TGTG
* *
38396607 GCAAAGCCACCAGTAACAATAATTGTG
1 GCAGAGCCACCAGTAACAGT-ATTGTG
* **
38396634 TCAGAGCCACCAGTATTAGTATGTGTG
1 GCAGAGCCACCAGTAACAGTAT-TGTG
*
38396661 GCAGAGCCACCAGAAACAGTA
1 GCAGAGCCACCAGTAACAGTA
38396682 CTTCCTCCAT
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
26 13 0.22
27 44 0.75
28 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (26 bp):
GCAGAGCCACCAGTAACAGTATTGTG
Found at i:38396842 original size:27 final size:27
Alignment explanation
Indices: 38396797--38397127 Score: 373
Period size: 27 Copynumber: 12.2 Consensus size: 27
38396787 CCTAATAGTC
38396797 ATTTTACCCTATCGAGGGTATTTCGATA
1 ATTTTACCC-ATCGAGGGTATTTCGATA
* *
38396825 ACTTTACCCATCGGGGGTATTTCGATA
1 ATTTTACCCATCGAGGGTATTTCGATA
38396852 ATTTTACCCATCGAGGGTATTTC-AGTA
1 ATTTTACCCATCGAGGGTATTTCGA-TA
* * *
38396879 ATTTTACCCAT-TAGGGGTATTCCGGTA
1 ATTTTACCCATCGA-GGGTATTTCGATA
* *
38396906 ATTTTACCCATCGAGGGTA-TTCTGGTG
1 ATTTTACCCATCGAGGGTATTTC-GATA
* *
38396933 ATTTTACTCATCGAGGGTATTT-TAGTA
1 ATTTTACCCATCGAGGGTATTTCGA-TA
* * *
38396960 AATTTACCCATTGAGGATATTTCGATA
1 ATTTTACCCATCGAGGGTATTTCGATA
*
38396987 ATTTTACCCATCGAGGGTATTTCGGTA
1 ATTTTACCCATCGAGGGTATTTCGATA
* *
38397014 ATTTTACCCATCGAGGGTATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTCGATA
**
38397041 ATTTTACCCATCGAGGGTATTTTAATA
1 ATTTTACCCATCGAGGGTATTTCGATA
* * *
38397068 ATTTTACCGATCGAGGGTATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTCGATA
* ** *
38397095 ATTTTACACATTAAGGGTATTTCGGTA
1 ATTTTACCCATCGAGGGTATTTCGATA
38397122 ATTTTA
1 ATTTTA
38397128 AACCCATAAC
Statistics
Matches: 261, Mismatches: 34, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.02
27 245 0.94
28 12 0.05
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (27 bp):
ATTTTACCCATCGAGGGTATTTCGATA
Found at i:38396947 original size:81 final size:81
Alignment explanation
Indices: 38396797--38397127 Score: 423
Period size: 81 Copynumber: 4.1 Consensus size: 81
38396787 CCTAATAGTC
* * * *
38396797 ATTTTACCCTATCGAGGGTATTTCGATAACTTTACCCATCGGGGGTATTTCGATAATTTTACCCA
1 ATTTTACCC-ATTGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCA
38396862 TCGAGGGTATTTCAGTA
65 TCGAGGGTATTTCAGTA
* * * *
38396879 ATTTTACCCATT-AGGGGTATTCCGGTAATTTTACCCATCGAGGGTA-TTCTGGTGATTTTACTC
1 ATTTTACCCATTGA-GGGTATTTCGATAATTTTACCCATCGAGGGTATTTC-GGTAATTTTACCC
*
38396942 ATCGAGGGTATTTTAGTA
64 ATCGAGGGTATTTCAGTA
* *
38396960 AATTTACCCATTGAGGATATTTCGATAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCAT
1 ATTTTACCCATTGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCAT
**
38397025 CGAGGGTATTTTGGTA
66 CGAGGGTATTTCAGTA
* ** * * *
38397041 ATTTTACCCATCGAGGGTATTTTAATAATTTTACCGATCGAGGGTATTTTGGTAATTTTACACAT
1 ATTTTACCCATTGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCAT
** *
38397106 TAAGGGTATTTCGGTA
66 CGAGGGTATTTCAGTA
38397122 ATTTTA
1 ATTTTA
38397128 AACCCATAAC
Statistics
Matches: 218, Mismatches: 27, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
80 4 0.02
81 201 0.92
82 13 0.06
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (81 bp):
ATTTTACCCATTGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCCAT
CGAGGGTATTTCAGTA
Found at i:38399289 original size:13 final size:13
Alignment explanation
Indices: 38399271--38399312 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
38399261 TGGGTAACAA
*
38399271 AAATTTATATAAT
1 AAATTTATATAAG
38399284 AAATTTATA-AAG
1 AAATTTATATAAG
*
38399296 AAATTGATAT-AG
1 AAATTTATATAAG
38399308 AAATT
1 AAATT
38399313 AATTGTGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 17 0.65
13 9 0.35
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (13 bp):
AAATTTATATAAG
Found at i:38403858 original size:80 final size:79
Alignment explanation
Indices: 38403774--38403945 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
38403764 GGACTAAGAT
*
38403774 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
38403838 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
38403854 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
38403919 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
38403933 CCGAAGGCATTTG
1 CCGAAGGCATTTG
38403946 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:38403925 original size:39 final size:39
Alignment explanation
Indices: 38403721--38403943 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
38403711 TTGAATGCTG
* * * * *
38403721 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
38403761 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
38403800 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
38403841 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
38403881 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
38403920 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
38403944 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:38403963 original size:79 final size:80
Alignment explanation
Indices: 38403801--38403978 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
38403791 AGATACAAAT
* * * *
38403801 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
38403866 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
38403881 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
38403945 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
38403960 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
38403979 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:38411256 original size:80 final size:79
Alignment explanation
Indices: 38411172--38411343 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
38411162 GGACTAAGAT
*
38411172 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
38411236 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
38411252 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
38411317 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
38411331 CCGAAGGCATTTG
1 CCGAAGGCATTTG
38411344 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:38411323 original size:39 final size:39
Alignment explanation
Indices: 38411119--38411341 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
38411109 TTGAATGCTG
* * * * *
38411119 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
38411159 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
38411198 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
38411239 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
38411279 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
38411318 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
38411342 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:38411361 original size:79 final size:80
Alignment explanation
Indices: 38411199--38411376 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
38411189 AGATACAAAT
* * * *
38411199 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
38411264 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
38411279 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
38411343 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
38411358 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
38411377 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:38415160 original size:12 final size:13
Alignment explanation
Indices: 38415143--38415171 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
38415133 TTTAGATAAA
38415143 TTAATTCAT-ATT
1 TTAATTCATCATT
38415155 TTAATTCATCATT
1 TTAATTCATCATT
38415168 TTAA
1 TTAA
38415172 ACCTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.55
Consensus pattern (13 bp):
TTAATTCATCATT
Found at i:38431019 original size:21 final size:21
Alignment explanation
Indices: 38430981--38431039 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
38430971 TATTTACATA
*
38430981 TACATATATATA-ATAAAT-CT
1 TACATATATATATA-AAATAAT
38431001 GTACATATATATATAAAATAAT
1 -TACATATATATATAAAATAAT
*
38431023 TACATATATACATAAAA
1 TACATATATATATAAAA
38431040 AATAATGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 32 0.94
22 2 0.06
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.36
Consensus pattern (21 bp):
TACATATATATATAAAATAAT
Found at i:38431031 original size:23 final size:23
Alignment explanation
Indices: 38430960--38431045 Score: 64
Period size: 25 Copynumber: 3.5 Consensus size: 23
38430950 ATTTTAAAAA
*
38430960 ATATAACAATATATTTACATATACAT
1 ATATAA-AATA-A-TTACATATATAT
* ** *
38430986 ATATATAATAAATCTGTACATATAT
1 ATATAAAAT-AAT-TACATATATAT
*
38431011 ATATAAAATAATTACATATATAC
1 ATATAAAATAATTACATATATAT
*
38431034 ATAAAAAATAAT
1 ATATAAAATAAT
38431046 GATTACTCTA
Statistics
Matches: 47, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
23 18 0.38
24 4 0.09
25 19 0.40
26 6 0.13
ACGTcount: A:0.55, C:0.08, G:0.01, T:0.36
Consensus pattern (23 bp):
ATATAAAATAATTACATATATAT
Found at i:38431417 original size:22 final size:22
Alignment explanation
Indices: 38431392--38431435 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
38431382 ATGTGAAAAC
*
38431392 ACCGAGGGGCAATCGGACAAAT
1 ACCGAGGGGCAATCGCACAAAT
38431414 ACCGAGGGGCAATCGCACAAAT
1 ACCGAGGGGCAATCGCACAAAT
38431436 TACCCATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.25, G:0.30, T:0.09
Consensus pattern (22 bp):
ACCGAGGGGCAATCGCACAAAT
Found at i:38432072 original size:21 final size:21
Alignment explanation
Indices: 38432046--38432121 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
38432036 AATCATATCT
38432046 TCTAAGATTGTATATATCATA
1 TCTAAGATTGTATATATCATA
*
38432067 TCTAAGATTGCATATATCATA
1 TCTAAGATTGTATATATCATA
*
38432088 TCTAAGATTG--CATATCATA
1 TCTAAGATTGTATATATCATA
38432107 TCTAAGATTGTATAT
1 TCTAAGATTGTATAT
38432122 CCTCGAAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 18 0.36
21 32 0.64
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.41
Consensus pattern (21 bp):
TCTAAGATTGTATATATCATA
Found at i:38432081 original size:19 final size:19
Alignment explanation
Indices: 38432059--38432122 Score: 101
Period size: 19 Copynumber: 3.3 Consensus size: 19
38432049 AAGATTGTAT
38432059 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
38432078 ATATATCATATCTAAGATTGC
1 --ATATCATATCTAAGATTGC
*
38432099 ATATCATATCTAAGATTGT
1 ATATCATATCTAAGATTGC
38432118 ATATC
1 ATATC
38432123 CTCGAAAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
19 23 0.55
21 19 0.45
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (19 bp):
ATATCATATCTAAGATTGC
Found at i:38432535 original size:44 final size:44
Alignment explanation
Indices: 38432484--38432655 Score: 168
Period size: 44 Copynumber: 3.9 Consensus size: 44
38432474 CTGCTCTCTG
*
38432484 CAACTTCAGAAAGATAAGATTTGTGGTTTTAATCTGCTCCACTA
1 CAACTTCAGAAAGATAAGATTTGTGGCTTTAATCTGCTCCACTA
** * *
38432528 CAACTTCAGGGAGATAAGATTAT-TGGCTTTAATCTACTCCACTG
1 CAACTTCAGAAAGATAAGATT-TGTGGCTTTAATCTGCTCCACTA
* ** * * *
38432572 CAACTTCCA-AGAGATAAGATTTGTCATCTTCAATCTGCCCCACTT
1 CAACTT-CAGAAAGATAAGATTTGT-GGCTTTAATCTGCTCCACTA
* * *
38432617 CAACTTCAGAAGGATAAGACTTGCTGGCTTAAATCTGCT
1 CAACTTCAGAAAGATAAGATTTG-TGGCTTTAATCTGCT
38432656 TCCCTCTATC
Statistics
Matches: 103, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
43 1 0.01
44 57 0.55
45 44 0.43
46 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (44 bp):
CAACTTCAGAAAGATAAGATTTGTGGCTTTAATCTGCTCCACTA
Found at i:38432802 original size:132 final size:132
Alignment explanation
Indices: 38432636--38433434 Score: 1267
Period size: 132 Copynumber: 6.1 Consensus size: 132
38432626 AAGGATAAGA
* * * *
38432636 CTTGCTGGCTTAAATCTGCTTCCCTCTATCTTGGAAAGATAAGATTTACCGTCCTCGATCTGCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTC
* ** * *
38432701 CACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTACTCTACTGCTACTCAGGAAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
38432766 GG
131 GG
* * *
38432768 CTTGGTGGCTTAAATCAGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTC
* * * *
38432833 CACTATTGCTTAGGGAGATAAGATCGACAATCTTTAACCTACTCCGCTGCTGCTTAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
38432898 GG
131 GG
* * * *
38432900 CTTAGTGGCTTAAATCTGCTTCCCACTACCTTGGAAAGATAAGATTT-CCATCTTCGATCTTCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTC
*
38432964 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
38433029 GG
131 GG
* *
38433031 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAATGATAAGATTTGCCGTCTTCGATCTTCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTC
* * *
38433096 CACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTACTCTGCTACTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
38433161 GG
131 GG
* * *
38433163 CTTGGTGACTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTC
* *
38433228 CACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACTTACTCCGCTGCTGCTCAGGGAGAACA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAG-ACA
38433293 AGG
130 AGG
38433296 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTC
* * *
38433361 CACTACTACTTAGGAAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
38433426 GG
131 GG
*
38433428 CTCGGTG
1 CTTGGTG
38433435 TTTCACCAGT
Statistics
Matches: 612, Mismatches: 53, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
131 121 0.20
132 367 0.60
133 124 0.20
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (132 bp):
CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTC
CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
GG
Found at i:38433029 original size:263 final size:264
Alignment explanation
Indices: 38432641--38433429 Score: 1258
Period size: 263 Copynumber: 3.0 Consensus size: 264
38432631 TAAGACTTGC
* *
38432641 TGGCTTAAATCTGCTTCCCTCTATCTTGGAAAGATAAGATTTACCGTCCTCGATCTGCTCCACTA
1 TGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCACTA
* * * *
38432706 CTGCTTAGGGAGATAAGATCTATAATCTTCAACCTAC-TCTACTGCTACTCAGGAAGACAAGGCT
66 CTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTC-GCTGCTGCTCAGGGAGACAAGGCT
* * *
38432770 TGGTGGCTTAAATCAGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCA
130 TGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCA
* * * *
38432835 CTATTGCTTAGGGAGATAAGATCGACAATCTTTAACCTACTCCGCTGCTGCTTAGGGAGACAAGG
195 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
38432900 CTTAG
260 CTTAG
* * *
38432905 TGGCTTAAATCTGCTTCCCACTACCTTGGAAAGATAAGATTT-CCATCTTCGATCTTCTCCACTA
1 TGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCACTA
38432969 CTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCTGCTCAGGGAGACAAGGCTT
66 CTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCTGCTCAGGGAGACAAGGCTT
* *
38433034 GGTGGCTTAAATCTGCTTCCCACTATCTTGGAATGATAAGATTTGCCGTCTTCGATCTTCTCCAC
131 GGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCAC
* * *
38433099 TACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTACTCTGCTACTGCTCAGGGAGACAAGGC
196 TACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGC
*
38433164 TTGG
261 TTAG
* * **
38433168 TGACTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTA
1 TGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCACTA
* * *
38433233 CTGCTTAGGGAGATAAGATCTACAATTTTCAACTTACTCCGCTGCTGCTCAGGGAGAACAAGGCT
66 CTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCTGCTCAGGGAG-ACAAGGCT
38433298 TGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCA
130 TGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCA
* * *
38433363 CTACTACTTAGGAAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGG
195 CTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG
38433428 CT
260 CT
38433430 CGGTGTTTCA
Statistics
Matches: 483, Mismatches: 39, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
263 237 0.49
264 114 0.24
265 132 0.27
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (264 bp):
TGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCACTA
CTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCTGCTCAGGGAGACAAGGCTT
GGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCAC
TACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGC
TTAG
Found at i:38433117 original size:44 final size:44
Alignment explanation
Indices: 38432804--38433384 Score: 150
Period size: 44 Copynumber: 13.2 Consensus size: 44
38432794 TATCTTGGAA
* ** * *
38432804 AGATAAGATTTGCCATCTTTGATCTGCTCCACTATTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTACTCCACTACTGCTTAGGG
* ** * * * *
38432848 AGATAAGA-TCGACAATCTTTAACCTACTCCGCTGCTGCTTAGGG
1 AGATAAGATTTG-CCGTCTTCAATCTACTCCACTACTGCTTAGGG
* * * * * * * *
38432892 AGACAAGGCTTAG-TGGCTTAAATCTGCTTCCCACTAC--CTT-GGAA
1 AGATAA-GATTTGCCGTCTTCAATCTAC-T-CCACTACTGCTTAGG-G
* * *
38432936 AGATAAGATTT-CCATCTTCGATCTTCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTACTCCACTACTGCTTAGGG
* * ** * * * * *
38432979 AGATAAGATCTACAATCTTCAACCTACTTCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTACTCCACTACTGCTTAGGG
* ** ** * * * *
38433023 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGA
1 AGATAAGATTTGCCGTCTTCAATCTAC-T-CCACTACTGCTTAGGG
* *
38433066 ATGATAAGATTTGCCGTCTTCGATCTTCTCCACTACTGCTTAGGG
1 A-GATAAGATTTGCCGTCTTCAATCTACTCCACTACTGCTTAGGG
* **** * ** *
38433111 AGATAAGATCTATAATCTTCAACCTACTCTGCTACTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTACTCCACTACTGCTTAGGG
* ** ** * * *
38433155 AGACAAGGCTTGGTGACTTAAATCTACTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTAC-T-CCACTACTGCTTAGG-G
* * *
38433199 AGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTACTCCACTACTGCTTAGGG
* * ** * * * *
38433243 AGATAAGATCTACAATTTTCAA-CTTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATC-TACTCCACTACTGCTTAGGG
* ** ** * * * *
38433287 AGAACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AG-ATAAGATTTGCCGTCTTCAATCTAC-T-CCACTACTGCTTAGG-G
* * * *
38433332 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTACTTAGGA
1 AGATAAGATTTGCCGTCTTCAATCTACTCCACTACTGCTTAGGG
38433376 AGATAAGAT
1 AGATAAGAT
38433385 CTACAATCTT
Statistics
Matches: 368, Mismatches: 137, Indels: 64
0.65 0.24 0.11
Matches are distributed among these distances:
41 7 0.02
42 19 0.05
43 40 0.11
44 253 0.69
45 28 0.08
46 17 0.05
47 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (44 bp):
AGATAAGATTTGCCGTCTTCAATCTACTCCACTACTGCTTAGGG
Found at i:38436027 original size:6 final size:6
Alignment explanation
Indices: 38436016--38436042 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
38436006 GTTCACCTCA
38436016 TTTTCT TTTTCT TTTTCT TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTT
38436043 GAGTCTTGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:38439521 original size:23 final size:22
Alignment explanation
Indices: 38439479--38439546 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 22
38439469 TATTTACATA
*
38439479 TACATATATATATAATAAAT-CT
1 TACATATATATATAA-AAATAAT
38439501 GTACATATATATATATAAAATAAT
1 -TACATATATATATA-AAAATAAT
*
38439525 TACATATATACATAAAAATAAT
1 TACATATATATATAAAAATAAT
38439547 GATTACTCTA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
22 8 0.20
23 31 0.76
24 2 0.05
ACGTcount: A:0.54, C:0.07, G:0.01, T:0.37
Consensus pattern (22 bp):
TACATATATATATAAAAATAAT
Found at i:38440536 original size:21 final size:21
Alignment explanation
Indices: 38440510--38440589 Score: 76
Period size: 19 Copynumber: 3.7 Consensus size: 21
38440500 AATCATATCT
38440510 TCTAAGATTGTATATATCATA
1 TCTAAGATTGTATATATCATA
*
38440531 TCTAAGATTTCATATATCATATCATA
1 TCTAAGA--T--TGTAT-ATATCATA
*
38440557 TCTAAGATTG--CATATCATA
1 TCTAAGATTGTATATATCATA
38440576 TCTAAGATT-TATAT
1 TCTAAGATTGTATAT
38440590 CCTCGAAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
19 17 0.35
20 2 0.04
21 7 0.15
22 1 0.02
23 1 0.02
24 1 0.02
25 4 0.08
26 15 0.31
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.42
Consensus pattern (21 bp):
TCTAAGATTGTATATATCATA
Found at i:38440545 original size:19 final size:19
Alignment explanation
Indices: 38440502--38440590 Score: 58
Period size: 19 Copynumber: 4.4 Consensus size: 19
38440492 GATTACAAAA
38440502 TCATATC-T-TCTAAGATT
1 TCATATCATATCTAAGATT
*
38440519 GTATATATCATATCTAAGATT
1 -T-CATATCATATCTAAGATT
38440540 TCATATATCATATCATATCTAAGATT
1 TC--ATATC--A---TATCTAAGATT
*
38440566 GCATATCATATCTAAGATT
1 TCATATCATATCTAAGATT
38440585 T-ATATC
1 TCATATC
38440591 CTCGAAAATT
Statistics
Matches: 57, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
18 6 0.11
19 16 0.28
20 2 0.04
21 14 0.25
22 1 0.02
23 1 0.02
24 5 0.09
26 12 0.21
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.43
Consensus pattern (19 bp):
TCATATCATATCTAAGATT
Found at i:38440572 original size:45 final size:44
Alignment explanation
Indices: 38440487--38440589 Score: 131
Period size: 45 Copynumber: 2.3 Consensus size: 44
38440477 AAATTAAATT
* * *
38440487 TCTAAGATTACA-AAATCATATCTTCTAAGATTGTATATATCATA
1 TCTAAGATTTCATATATCATATCTTCTAAGATTG-ACATATCATA
38440531 TCTAAGATTTCATATATCATATCATATCTAAGATTG-CATATCATA
1 TCTAAGATTTCATATATCATATC-T-TCTAAGATTGACATATCATA
38440576 TCTAAGATTT-ATAT
1 TCTAAGATTTCATAT
38440590 CCTCGAAAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
44 15 0.28
45 27 0.51
46 1 0.02
47 10 0.19
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.41
Consensus pattern (44 bp):
TCTAAGATTTCATATATCATATCTTCTAAGATTGACATATCATA
Found at i:38440736 original size:12 final size:13
Alignment explanation
Indices: 38440719--38440747 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
38440709 TTTAGATAAA
38440719 TTAATTCAT-ATT
1 TTAATTCATCATT
38440731 TTAATTCATCATT
1 TTAATTCATCATT
38440744 TTAA
1 TTAA
38440748 ACCTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.55
Consensus pattern (13 bp):
TTAATTCATCATT
Found at i:38451276 original size:25 final size:25
Alignment explanation
Indices: 38451242--38451294 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
38451232 TTGGTACAAA
38451242 TTTTGAAAAACAGCAATCAATGCAC
1 TTTTGAAAAACAGCAATCAATGCAC
38451267 TTTTGAAAAACAGCAATCAATGCAC
1 TTTTGAAAAACAGCAATCAATGCAC
38451292 TTT
1 TTT
38451295 CTCCCATCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (25 bp):
TTTTGAAAAACAGCAATCAATGCAC
Found at i:38475145 original size:52 final size:52
Alignment explanation
Indices: 38475088--38475191 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
38475078 AAACTTATAA
*
38475088 TCAAAACTTTTCAAATGCAAAACCAATCTACGGATATATATTCTTTTAACTT
1 TCAAAACTTTTCAAATGCAAAACCAATCTACGAATATATATTCTTTTAACTT
38475140 TCAAAACTTTTCAAATGCAAAACCAATCTACGAATATATATTCTTTTAACTT
1 TCAAAACTTTTCAAATGCAAAACCAATCTACGAATATATATTCTTTTAACTT
38475192 CCGTTTATTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.39, C:0.19, G:0.05, T:0.37
Consensus pattern (52 bp):
TCAAAACTTTTCAAATGCAAAACCAATCTACGAATATATATTCTTTTAACTT
Found at i:38477767 original size:18 final size:17
Alignment explanation
Indices: 38477740--38477774 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
38477730 TCTATTTATC
*
38477740 TAATTAAATATTTAATA
1 TAATTAAATATGTAATA
38477757 TAATATAAATATGTAATA
1 TAAT-TAAATATGTAATA
38477775 ATTATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
TAATTAAATATGTAATA
Found at i:38477956 original size:19 final size:19
Alignment explanation
Indices: 38477903--38477957 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
38477893 TTTAACATAC
38477903 ATAATAATATATATAATAA
1 ATAATAATATATATAATAA
*
38477922 AT-A-AATGT-T-T-AT--
1 ATAATAATATATATAATAA
38477934 ATAATAATATATATAATAA
1 ATAATAATATATATAATAA
38477953 ATAAT
1 ATAAT
38477958 TAATTATCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 14
0.63 0.05 0.33
Matches are distributed among these distances:
12 2 0.07
13 1 0.04
14 6 0.22
15 2 0.07
16 2 0.07
17 6 0.22
18 1 0.04
19 7 0.26
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
ATAATAATATATATAATAA
Found at i:38478059 original size:7 final size:7
Alignment explanation
Indices: 38478047--38478071 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
38478037 TGTACCTTAT
38478047 TATATGA
1 TATATGA
38478054 TATATGA
1 TATATGA
38478061 TATATGA
1 TATATGA
38478068 TATA
1 TATA
38478072 GATTGTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (7 bp):
TATATGA
Found at i:38479061 original size:15 final size:15
Alignment explanation
Indices: 38479041--38479072 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
38479031 TAATTTATGA
38479041 CATGTACTTCACAGG
1 CATGTACTTCACAGG
38479056 CATGTACTTCACAGG
1 CATGTACTTCACAGG
38479071 CA
1 CA
38479073 CAATTAGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (15 bp):
CATGTACTTCACAGG
Found at i:38485861 original size:14 final size:15
Alignment explanation
Indices: 38485839--38485871 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
38485829 TTTAAATAGA
*
38485839 TTTATTTTTTTTA-T
1 TTTAATTTTTTTACT
38485853 TTTAATTTTTTTACT
1 TTTAATTTTTTTACT
38485868 TTTA
1 TTTA
38485872 TAAATACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTAATTTTTTTACT
Found at i:38487833 original size:19 final size:19
Alignment explanation
Indices: 38487809--38487862 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
38487799 AATCATATCT
38487809 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
38487828 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
38487847 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
38487863 CTTGAATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:38487858 original size:38 final size:40
Alignment explanation
Indices: 38487786--38487862 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
38487776 AAATTAAATC
38487786 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTACAAAATCATA--TTCTAAGATTGCATATCATA
*
38487828 TCTAAGATTAC-ATATCATA-TCTAAGATTGCATATC
1 TCTAAGATTACAAAATCATATTCTAAGATTGCATATC
38487863 CTTGAATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 16 0.47
41 7 0.21
42 11 0.32
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (40 bp):
TCTAAGATTACAAAATCATATTCTAAGATTGCATATCATA
Found at i:38488533 original size:20 final size:20
Alignment explanation
Indices: 38488508--38488546 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
38488498 ACCCTACTTA
38488508 AAGGTACCAATACCTGACCC
1 AAGGTACCAATACCTGACCC
*
38488528 AAGGTATCAATACCTGACC
1 AAGGTACCAATACCTGACC
38488547 TTTGACATCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.31, G:0.15, T:0.18
Consensus pattern (20 bp):
AAGGTACCAATACCTGACCC
Found at i:38490174 original size:21 final size:21
Alignment explanation
Indices: 38490150--38490199 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
38490140 AATAATTCCA
38490150 AAACTTAACCAAAAC-ACACC
1 AAACTTAACCAAAACTACACC
*
38490170 TAAACTT-ACCCAAACTTACACC
1 -AAACTTAACCAAAAC-TACACC
38490192 AAACTTAA
1 AAACTTAA
38490200 AACACATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 7 0.28
21 12 0.48
22 6 0.24
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (21 bp):
AAACTTAACCAAAACTACACC
Found at i:38490184 original size:10 final size:11
Alignment explanation
Indices: 38490165--38490198 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
38490155 TAACCAAAAC
38490165 ACACCTAAACTT
1 ACACC-AAACTT
38490177 AC-CCAAACTT
1 ACACCAAACTT
38490187 ACACCAAACTT
1 ACACCAAACTT
38490198 A
1 A
38490199 AAACACATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 8 0.38
11 11 0.52
12 2 0.10
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (11 bp):
ACACCAAACTT
Done.