Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 150 of 230
Found at i:44263448 original size:49 final size:47
Alignment explanation
Indices: 44263169--44263766 Score: 844
Period size: 47 Copynumber: 12.6 Consensus size: 47
44263159 TCCTTCGGGA
* * * *
44263169 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
44263216 CTTATCACATATATAGACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
44263263 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
44263310 CTTACCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
44263357 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
44263404 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
44263453 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATT-AGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
44263499 CTTATCACATATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATA--CACTTTCACATTCATCACATTGGCCATTCGGC
* *
44263548 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
44263597 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
44263644 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
44263691 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
44263740 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
44263767 TATTCAAATA
Statistics
Matches: 516, Mismatches: 24, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
46 17 0.03
47 324 0.63
48 28 0.05
49 139 0.27
50 1 0.00
51 7 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:44263460 original size:96 final size:96
Alignment explanation
Indices: 44263169--44263766 Score: 847
Period size: 96 Copynumber: 6.3 Consensus size: 96
44263159 TCCTTCGGGA
* * * * * *
44263169 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGACCTTATCAC--ATATATAG
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATAC
*
44263232 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
* * * * * *
44263263 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTA-C-CACACATACA
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATA
*
44263325 CA-TGTTCACATTCATCACATTGGCCATTCGGC
65 CACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
44263357 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATA
*
44263421 CACTTTCACATTCATCACATTGGCCATTCGGC
65 CACTTTCACATTCATCACATTGGCCATTAGGC
* * *
44263453 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATT-AGCCTTATCACATATATATGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATAC
*
44263517 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
*
44263548 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAT
* *
44263611 ACACTTTCACATTCATCACATCGGCTATTAGGC
64 ACACTTTCACATTCATCACATTGGCCATTAGGC
*
44263644 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATAC
44263709 ACTTTCACATTCATCACATTGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
44263740 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
44263767 TATTCAAATA
Statistics
Matches: 461, Mismatches: 30, Indels: 24
0.90 0.06 0.05
Matches are distributed among these distances:
92 1 0.00
93 3 0.01
94 171 0.37
95 57 0.12
96 183 0.40
97 36 0.08
98 10 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:44265158 original size:85 final size:85
Alignment explanation
Indices: 44265030--44265207 Score: 347
Period size: 85 Copynumber: 2.1 Consensus size: 85
44265020 ATTTTATTGT
*
44265030 CCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
1 CCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
44265095 AGCCATAACATCTTGTCCAC
66 AGCCATAACATCTTGTCCAC
44265115 CCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
1 CCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
44265180 AGCCATAACATCTTGTCCAC
66 AGCCATAACATCTTGTCCAC
44265200 CCATGCTC
1 CCATGCTC
44265208 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (85 bp):
CCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
AGCCATAACATCTTGTCCAC
Found at i:44267933 original size:113 final size:113
Alignment explanation
Indices: 44267735--44267968 Score: 407
Period size: 113 Copynumber: 2.1 Consensus size: 113
44267725 CTCCCTACAG
44267735 GCAATTAAAAGCAACATGTAATAACACTTAAGTACAATTCAAGCTCTTTAATATAATGCTCTAAA
1 GCAATTAAAAGCAACATGTAATAACACTTAAGTACAATTCAAGCTCTTTAATATAATGCTCTAAA
*
44267800 AATACCAATGCAACATCTTAAAATGAAACTAAAATCACTTAAGTGCAA
66 AATACAAATGCAACATCTTAAAATGAAACTAAAATCACTTAAGTGCAA
* *
44267848 GCAATTAAAAGCAACATGTAATAACACTTAAGTATAATTCAAGCTTTTTAATGA-AATGCTCTAA
1 GCAATTAAAAGCAACATGTAATAACACTTAAGTACAATTCAAGCTCTTTAAT-ATAATGCTCTAA
* *
44267912 AAATACAAATGCAACATCTTAAAATGCAACTAAACTCACTTAAGTGCAA
65 AAATACAAATGCAACATCTTAAAATGAAACTAAAATCACTTAAGTGCAA
44267961 GCAATTAA
1 GCAATTAA
44267969 CTAAGCCTAA
Statistics
Matches: 115, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
113 114 0.99
114 1 0.01
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.27
Consensus pattern (113 bp):
GCAATTAAAAGCAACATGTAATAACACTTAAGTACAATTCAAGCTCTTTAATATAATGCTCTAAA
AATACAAATGCAACATCTTAAAATGAAACTAAAATCACTTAAGTGCAA
Found at i:44271639 original size:49 final size:47
Alignment explanation
Indices: 44271418--44272394 Score: 1476
Period size: 47 Copynumber: 20.6 Consensus size: 47
44271408 CCCTTCGGGA
* * * * * *
44271418 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44271465 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44271512 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44271559 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44271606 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44271655 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44271704 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44271753 CTTATCACATATA-ACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44271799 CTTATCACATATATATACACTTTCACATTCAGCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44271848 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44271897 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44271944 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44271991 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44272038 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
* * *
44272085 CTTATCACATATATAGACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
44272132 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * * *
44272179 CTTATCACACATACACA-TGTTCATATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
*
44272226 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44272273 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44272320 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44272369 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
44272395 CACAATTATC
Statistics
Matches: 873, Mismatches: 46, Indels: 22
0.93 0.05 0.02
Matches are distributed among these distances:
46 39 0.04
47 554 0.63
48 7 0.01
49 273 0.31
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44272091 original size:22 final size:22
Alignment explanation
Indices: 44272066--44272187 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
44272056 TTTCACATTC
44272066 ATCACATTGGCCATTCAGCCTT
1 ATCACATTGGCCATTCAGCCTT
* * * *
44272088 ATCACATATATAGACTTTCA-CATT
1 ATCAC--AT-TGGCCATTCAGCCTT
*
44272112 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCAGCCTT
* * *
44272135 ATCTCATATATG-CATGTTCA-CATT
1 ATCACAT-T-GGCCA--TTCAGCCTT
*
44272159 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCAGCCTT
44272182 ATCACA
1 ATCACA
44272188 CATACACATG
Statistics
Matches: 71, Mismatches: 17, Indels: 24
0.63 0.15 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 21 0.30
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:44272116 original size:25 final size:25
Alignment explanation
Indices: 44272041--44272119 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
44272031 ATTAGGCCTT
*
44272041 ATCACATATATACACTTTCACATTC
1 ATCACATATATAGACTTTCACATTC
* * * *
44272066 ATCAC--AT-TGGCCATTCAGCCTT-
1 ATCACATATATAGACTTTCA-CATTC
44272088 ATCACATATATAGACTTTCACATTC
1 ATCACATATATAGACTTTCACATTC
44272113 ATCACAT
1 ATCACAT
44272120 TGGCCATTCG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 5 0.12
25 19 0.47
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATAGACTTTCACATTC
Found at i:44275387 original size:25 final size:25
Alignment explanation
Indices: 44275353--44275403 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
44275343 GAGGAAGAGG
*
44275353 GTGACTGGCTCGGGTAGCAAAAATT
1 GTGAATGGCTCGGGTAGCAAAAATT
*
44275378 GTGAATGGCTCGGGTATCAAAAATT
1 GTGAATGGCTCGGGTAGCAAAAATT
44275403 G
1 G
44275404 ACTTAAATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.25
Consensus pattern (25 bp):
GTGAATGGCTCGGGTAGCAAAAATT
Found at i:44278235 original size:39 final size:40
Alignment explanation
Indices: 44278192--44278361 Score: 227
Period size: 40 Copynumber: 4.3 Consensus size: 40
44278182 TCCTCGTTCA
* * *
44278192 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
44278231 AATGCCTTCGGGACTTAACCCGGATTT-GATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAG-TAACTCACACG
* * *
44278271 AATACCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
* * *
44278311 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
*
44278351 AAGGCCTTCGG
1 AATGCCTTCGG
44278362 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.29
40 82 0.70
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
Found at i:44278374 original size:40 final size:37
Alignment explanation
Indices: 44278190--44278414 Score: 146
Period size: 40 Copynumber: 5.6 Consensus size: 37
44278180 GCTCCTCGTT
* * * *
44278190 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAA-GCCTTC-GGACTTAGCCCGGATTTAAT-ACTCGCA
* * * *
44278230 CAATGCCTTCGGGACTTAACCCGGATTTGATAACTCACA
1 CAAAGCCTTC-GGACTTAGCCCGGATTTAAT-ACTCGCA
*
44278269 CGAATA-CCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 C-AA-AGCCTTC-GGACTTAGCCCGGATTTAAT-ACTCGCA
* * *
44278309 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 C-AAAGCCTTC-GGACTTAGCCCGGATTTAATA-CTCGCA
* * * *
44278349 CAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAA-GCCTTCGGA-CTTAGCCCGGATTTAAT-AC-TCGCA
44278390 CAAAGCCTTCGGAACTTAGCCCGGA
1 CAAAGCCTTCGG-ACTTAGCCCGGA
44278415 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 18, Indels: 18
0.81 0.09 0.09
Matches are distributed among these distances:
39 37 0.23
40 111 0.70
41 10 0.06
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (37 bp):
CAAAGCCTTCGGACTTAGCCCGGATTTAATACTCGCA
Found at i:44278374 original size:80 final size:79
Alignment explanation
Indices: 44278196--44278414 Score: 217
Period size: 80 Copynumber: 2.7 Consensus size: 79
44278186 CGTTCAAATG
* * * *
44278196 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATTTGAT
1 CCTTCGGGACTTAACCCGGATTTAATAACTCACACAATGCCTTCGGGACTTAACCCGGATTTGAT
* *
44278261 AACTCACACGAATA
66 AACTCACACAAAGA
*
44278275 CCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTT-A
1 CCTTCGGGACTTAACCCGGATTTAATAACTCACAC-AATGCCTTCGGGACTTAACCCGGATTTGA
* * *
44278339 GTATCTCGCACAAAGG
65 -TAACTCACACAAAGA
** * * * * * * *
44278355 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGAACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATTTAATAACTCA-CACAATGCCTTCGGGACTTAACCCGGA
44278415 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 34 0.29
80 79 0.68
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAACCCGGATTTAATAACTCACACAATGCCTTCGGGACTTAACCCGGATTTGAT
AACTCACACAAAGA
Found at i:44278423 original size:41 final size:41
Alignment explanation
Indices: 44278346--44278423 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
44278336 TTAGTATCTC
* * * *
44278346 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGAACTTAGCCCGGACACATTCACTTA
44278387 GCACAAA-GCCTTCGGAACTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTCGGAACTTAGCCCGGACA-CATTCA
44278424 ATTAATCATG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 20 0.62
41 12 0.38
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGAACTTAGCCCGGACACATTCACTTA
Found at i:44280149 original size:27 final size:27
Alignment explanation
Indices: 44280119--44280295 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
44280109 AAATTGTACA
* *
44280119 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
44280146 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
44280173 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * *
44280200 GCACTAAGAGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
44280228 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
44280255 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
44280282 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
44280296 GGCTCAATGT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 101 0.82
28 22 0.18
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:44280232 original size:82 final size:81
Alignment explanation
Indices: 44280119--44280274 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
44280109 AAATTGTACA
* * * *
44280119 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
44280183 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
44280200 GCACTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
44280265 TGCGAGTTGA
65 TGCGAATTGA
44280275 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:44288110 original size:27 final size:27
Alignment explanation
Indices: 44288080--44288256 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 27
44288070 AAATTGTACA
* * *
44288080 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
44288107 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
44288134 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
** *
44288161 GCACTAAGTGTGCGAGCCTGACTATGTA
1 GCACTAAGTGTGCGA-ATTGACTATGTG
* * *
44288189 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
44288216 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
44288243 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
44288257 GGCTCAATGT
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:44288193 original size:82 final size:81
Alignment explanation
Indices: 44288080--44288235 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
44288070 AAATTGTACA
** * * *
44288080 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
44288144 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
44288161 GCACTAAGTGTGCGAGCCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-CCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
44288226 TGCGAGTTGA
65 TGCGAATTGA
44288236 TTATATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:44288247 original size:82 final size:81
Alignment explanation
Indices: 44288076--44288256 Score: 193
Period size: 82 Copynumber: 2.2 Consensus size: 81
44288066 GATTAAATTG
* ** * * *
44288076 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
44288141 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
44288157 TGCGGCACTAAGTGTGCGAGCCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-CCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
44288221 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
44288239 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
44288257 GGCTCAATGT
Statistics
Matches: 80, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
81 17 0.21
82 63 0.79
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:44305255 original size:16 final size:16
Alignment explanation
Indices: 44305231--44305264 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
44305221 CTGTGGATTA
* *
44305231 TGGGTTTTATAAAAAT
1 TGGGCTTTAAAAAAAT
44305247 TGGGCTTTAAAAAAAT
1 TGGGCTTTAAAAAAAT
44305263 TG
1 TG
44305265 ATTGATTTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.38
Consensus pattern (16 bp):
TGGGCTTTAAAAAAAT
Found at i:44310918 original size:17 final size:18
Alignment explanation
Indices: 44310896--44310929 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
44310886 ATTTGGGTCA
44310896 TGTGGG-CCACACGGGCG
1 TGTGGGCCCACACGGGCG
44310913 TGTGGGCCCACACGGGC
1 TGTGGGCCCACACGGGC
44310930 AAACATCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.12, C:0.32, G:0.44, T:0.12
Consensus pattern (18 bp):
TGTGGGCCCACACGGGCG
Found at i:44314935 original size:11 final size:11
Alignment explanation
Indices: 44314919--44314961 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
44314909 CCCAAGAGAG
44314919 AAAAAGAAAAT
1 AAAAAGAAAAT
* *
44314930 AAAAAGGAAAG
1 AAAAAGAAAAT
44314941 AAAAAGAAAAT
1 AAAAAGAAAAT
* *
44314952 TAAAACAAAA
1 AAAAAGAAAA
44314962 GCCTACATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.79, C:0.02, G:0.12, T:0.07
Consensus pattern (11 bp):
AAAAAGAAAAT
Found at i:44314962 original size:22 final size:22
Alignment explanation
Indices: 44314917--44314962 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
44314907 GGCCCAAGAG
**
44314917 AGAAAAAGAAAATAAAAAGGAA
1 AGAAAAAGAAAATAAAAACAAA
*
44314939 AGAAAAAGAAAATTAAAACAAA
1 AGAAAAAGAAAATAAAAACAAA
44314961 AG
1 AG
44314963 CCTACATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.07
Consensus pattern (22 bp):
AGAAAAAGAAAATAAAAACAAA
Found at i:44315512 original size:42 final size:42
Alignment explanation
Indices: 44315350--44315652 Score: 389
Period size: 42 Copynumber: 7.3 Consensus size: 42
44315340 CTTCATATAC
* * **
44315350 AATGCAATGAAAAGTAAATAGACCT-CACAGTTGGGCCTCTA
1 AATGCAATGAAAGGTAAATGGACCTCCACACCTGGGCCTCTA
*
44315391 AATGCAATGAAAGGTAAATGGACCTCCACACTTGGGCCTCTA
1 AATGCAATGAAAGGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
44315433 AATG-ATTGAAACGTAAATGGACCTCCACACTTGGGCCTCTA
1 AATGCAATGAAAGGTAAATGGACCTCCACACCTGGGCCTCTA
* *
44315474 AATGCAATTG-AAGGTACATGGACCTCCACACCTAGGCCTCTA
1 AATGCAA-TGAAAGGTAAATGGACCTCCACACCTGGGCCTCTA
* *
44315516 AATGCAATGAAACGTAAATAGG-CCTCCACACCTGAGCCTCTA
1 AATGCAATGAAAGGTAAAT-GGACCTCCACACCTGGGCCTCTA
* * *
44315558 AATGCAATGAAAGATAAATGGACCTCAACACCTGGGACTCTA
1 AATGCAATGAAAGGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
44315600 AATGCAATGAAAAGTAAATGGACCTCCACACCTTGGCCTATA
1 AATGCAATGAAAGGTAAATGGACCTCCACACCTGGGCCTCTA
*
44315642 ACTGCAATGAA
1 AATGCAATGAA
44315653 TGTTTTCCTT
Statistics
Matches: 230, Mismatches: 26, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
41 66 0.29
42 160 0.70
43 4 0.02
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (42 bp):
AATGCAATGAAAGGTAAATGGACCTCCACACCTGGGCCTCTA
Found at i:44316075 original size:7 final size:8
Alignment explanation
Indices: 44316055--44316131 Score: 51
Period size: 7 Copynumber: 10.4 Consensus size: 8
44316045 TGCTCTCTCC
44316055 CTTTTTCT
1 CTTTTTCT
44316063 CTTTTTCT
1 CTTTTTCT
44316071 CTTTTT-T
1 CTTTTTCT
44316078 -TTTGTT-T
1 CTTT-TTCT
*
44316085 CTTTTTGT
1 CTTTTTCT
*
44316093 -TTTGT-T
1 CTTTTTCT
*
44316099 GTTTTTCT
1 CTTTTTCT
44316107 -TTTTTCT
1 CTTTTTCT
44316114 -TTTTTCT
1 CTTTTTCT
* *
44316121 TTTTTTTT
1 CTTTTTCT
44316129 CTT
1 CTT
44316132 CTTTTTTTTA
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
6 4 0.07
7 28 0.47
8 27 0.46
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (8 bp):
CTTTTTCT
Found at i:44316079 original size:20 final size:19
Alignment explanation
Indices: 44316056--44316140 Score: 68
Period size: 20 Copynumber: 4.3 Consensus size: 19
44316046 GCTCTCTCCC
*
44316056 TTTTTCTCTTTTTCTCTTTTT
1 TTTTTTTCTTTTTCTC--TTT
*
44316077 TTTTGTTTCTTTTTGT-TTT
1 TTTT-TTTCTTTTTCTCTTT
44316096 GTTGTTTTTCTTTTT-TCTTT
1 -TT-TTTTTCTTTTTCTCTTT
44316116 TTTCTTTT-TTTTTCTTCTTT
1 TTT-TTTTCTTTTTC-TCTTT
44316136 TTTTT
1 TTTTT
44316141 ATGTAGGCAA
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
18 6 0.11
19 12 0.22
20 22 0.40
21 6 0.11
22 9 0.16
ACGTcount: A:0.00, C:0.12, G:0.05, T:0.84
Consensus pattern (19 bp):
TTTTTTTCTTTTTCTCTTT
Found at i:44316089 original size:14 final size:14
Alignment explanation
Indices: 44316070--44316139 Score: 63
Period size: 14 Copynumber: 4.8 Consensus size: 14
44316060 TCTCTTTTTC
44316070 TCTTTTTTTTTGTT
1 TCTTTTTTTTTGTT
44316084 TCTTTTTGTTTTGTT
1 TCTTTTT-TTTTGTT
* *
44316099 GTTTTTCTTTTTTCTT
1 -TCTTT-TTTTTTGTT
44316115 T-TTTCTTTTTT-TT
1 TCTTT-TTTTTTGTT
44316128 TCTTCTTTTTTT
1 TCTT-TTTTTTT
44316140 TATGTAGGCA
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
13 3 0.06
14 25 0.51
15 9 0.18
16 10 0.20
17 2 0.04
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (14 bp):
TCTTTTTTTTTGTT
Found at i:44319951 original size:20 final size:18
Alignment explanation
Indices: 44319926--44319977 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
44319916 ACCTGAAAAT
44319926 AAATCAAAGTTTTCTTTAAA
1 AAATCAAAGTTTTC-TT-AA
* *
44319946 AAATCACTATTTTTCTTAA
1 AAATCA-AAGTTTTCTTAA
44319965 AAATCAAAGTTTT
1 AAATCAAAGTTTT
44319978 ATTTCGAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 5 0.19
19 8 0.30
20 8 0.30
21 6 0.22
ACGTcount: A:0.42, C:0.12, G:0.04, T:0.42
Consensus pattern (18 bp):
AAATCAAAGTTTTCTTAA
Found at i:44320322 original size:3 final size:3
Alignment explanation
Indices: 44320314--44320354 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
44320304 ACTAGAATGC
44320314 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
44320355 TTACCTTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:44320475 original size:25 final size:23
Alignment explanation
Indices: 44320454--44320496 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
44320444 TTCATTTATA
44320454 AAAAAAGATAATAATAATA-TTT
1 AAAAAAGATAATAATAATATTTT
* *
44320476 AATAAAGATAATAATACTATT
1 AAAAAAGATAATAATAATATT
44320497 CATTGCAGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (23 bp):
AAAAAAGATAATAATAATATTTT
Found at i:44328178 original size:32 final size:30
Alignment explanation
Indices: 44328142--44328252 Score: 95
Period size: 32 Copynumber: 3.7 Consensus size: 30
44328132 TAATTACTTT
44328142 AATATTAAATTAATATAATACTTATCAAGATA
1 AATATTAAATTAATATAATAC-TAT-AAGATA
* *
44328174 AATATTAGATTAAATTTAATA-T-TAA-AT-
1 AATATTAAATT-AATATAATACTATAAGATA
* *
44328201 ATTATTAAATTAATAAAATACTATTAAGATA
1 AATATTAAATTAATATAATACTA-TAAGATA
* *
44328232 AGTATTAAATTTAATTTAATA
1 AATATTAAA-TTAATATAATA
44328253 TTAAAACTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 14
0.73 0.10 0.16
Matches are distributed among these distances:
26 7 0.11
27 10 0.16
28 2 0.03
29 5 0.08
30 3 0.05
31 9 0.14
32 19 0.30
33 8 0.13
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.41
Consensus pattern (30 bp):
AATATTAAATTAATATAATACTATAAGATA
Found at i:44328219 original size:19 final size:21
Alignment explanation
Indices: 44328182--44328227 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 21
44328172 TAAATATTAG
*
44328182 ATTAAATTTAATATTAAATATT
1 ATTAAATTTAATA-TAAATACT
44328204 ATTAAA-TTAATA-AAATACT
1 ATTAAATTTAATATAAATACT
44328223 ATTAA
1 ATTAA
44328228 GATAAGTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 11 0.48
21 6 0.26
22 6 0.26
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
ATTAAATTTAATATAAATACT
Found at i:44328231 original size:58 final size:58
Alignment explanation
Indices: 44328144--44328270 Score: 184
Period size: 58 Copynumber: 2.2 Consensus size: 58
44328134 ATTACTTTAA
* * *
44328144 TATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATAT
1 TATTAAATTAATAAAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAA-AC
* * *
44328203 TATTAAATTAATAAAATAC-TATTAAGATAAGTATTAAATTTAATTTAATATTAAAAC
1 TATTAAATTAATAAAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAAAC
44328260 TATTAAATTAA
1 TATTAAATTAA
44328271 CATTATTTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
57 12 0.19
58 32 0.52
59 18 0.29
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (58 bp):
TATTAAATTAATAAAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAAAC
Found at i:44328582 original size:19 final size:20
Alignment explanation
Indices: 44328558--44328600 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
44328548 TTCAACCAGT
*
44328558 TTTTGGGTT-TCGGTCTCAA
1 TTTTGGGTTCTCGGGCTCAA
44328577 TTTTGGGTTCTCGGGCTCAA
1 TTTTGGGTTCTCGGGCTCAA
44328597 TTTT
1 TTTT
44328601 CGATATCTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.09, C:0.16, G:0.26, T:0.49
Consensus pattern (20 bp):
TTTTGGGTTCTCGGGCTCAA
Found at i:44331764 original size:46 final size:46
Alignment explanation
Indices: 44331695--44331787 Score: 141
Period size: 46 Copynumber: 2.0 Consensus size: 46
44331685 AGACGACACA
* * *
44331695 ATTAGAGTTTTAGTTTTAGTTATTTTCTTTATTGTATCAGATTTTT
1 ATTAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGATTTTT
* *
44331741 ATTAGAGTTTTAGTTTTACTTATTTTCTCTATTATATTAGGTTTTT
1 ATTAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGATTTTT
44331787 A
1 A
44331788 ATTCCTTTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.23, C:0.05, G:0.12, T:0.60
Consensus pattern (46 bp):
ATTAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGATTTTT
Found at i:44333298 original size:46 final size:46
Alignment explanation
Indices: 44333207--44333301 Score: 120
Period size: 46 Copynumber: 2.1 Consensus size: 46
44333197 GGAGACGACA
* * *
44333207 ATTAGAGTTTTAGTTTTATATATTTTCTTTATTAAATCATATTTTT
1 ATTAGAGTTTTAGTTTTATATATTTCCTCTATTAAATCAGATTTTT
* * *
44333253 ATTAGAGTTTTAGTTTTACT-TATTTCCTCTATTATATTAGGTTTTT
1 ATTAGAGTTTTAGTTTTA-TATATTTCCTCTATTAAATCAGATTTTT
44333299 ATT
1 ATT
44333302 TCTTTTATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
46 41 0.98
47 1 0.02
ACGTcount: A:0.25, C:0.06, G:0.08, T:0.60
Consensus pattern (46 bp):
ATTAGAGTTTTAGTTTTATATATTTCCTCTATTAAATCAGATTTTT
Found at i:44347644 original size:16 final size:16
Alignment explanation
Indices: 44347602--44347650 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
44347592 AGTTTTTTTA
44347602 AAATATAATATA--AT
1 AAATATAATATATTAT
*
44347616 AAATTTGAA-ATATTAT
1 AAATAT-AATATATTAT
44347632 AAATATAATATATTTAT
1 AAATATAATATA-TTAT
44347649 AA
1 AA
44347651 TGTTATGGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
14 8 0.29
15 4 0.14
16 10 0.36
17 6 0.21
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (16 bp):
AAATATAATATATTAT
Found at i:44348012 original size:24 final size:24
Alignment explanation
Indices: 44347961--44348013 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
44347951 TTCAGTATTT
* *
44347961 ATTAGTATAATACATTTAGCATTT
1 ATTAGCATAATACATTTAGCATTG
*
44347985 ATTAGCATAATATATTT-GACATTG
1 ATTAGCATAATACATTTAG-CATTG
44348009 ATTAG
1 ATTAG
44348014 AATTATGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (24 bp):
ATTAGCATAATACATTTAGCATTG
Found at i:44351489 original size:43 final size:43
Alignment explanation
Indices: 44351415--44351499 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
44351405 CATTGGCGTC
* ** * *
44351415 GTATATGATTACGTGTAAGACCTTGTCTGGGATAGTGGCATTT
1 GTATATGATTACATGTAAGACCACGTATGGGACAGTGGCATTT
* *
44351458 GTATTTGATTACATGTAAGACCACGTATGGGACATTGGCATT
1 GTATATGATTACATGTAAGACCACGTATGGGACAGTGGCATT
44351500 GTACAAGCTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (43 bp):
GTATATGATTACATGTAAGACCACGTATGGGACAGTGGCATTT
Found at i:44351846 original size:19 final size:19
Alignment explanation
Indices: 44351822--44351875 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
44351812 AATCTTCAAG
44351822 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
44351841 GATATGTAACCTTAGATAT
1 GATATGCAATCTTAGATAT
44351860 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
44351876 AGATATGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:44351901 original size:22 final size:22
Alignment explanation
Indices: 44351822--44351898 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 22
44351812 AATCTTCAAG
44351822 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
* *
44351841 GATATGTAACCTTAG---ATAT
1 GATATGCAATCTTAGAAGATAT
44351860 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
44351882 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
44351899 GATTTAATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
19 28 0.61
22 6 0.13
23 12 0.26
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:44357854 original size:39 final size:39
Alignment explanation
Indices: 44357759--44358020 Score: 320
Period size: 39 Copynumber: 6.6 Consensus size: 39
44357749 TTGAATGATG
*
44357759 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
44357797 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
44357838 TCCAGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
44357877 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
44357916 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
44357955 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
44357994 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
44358021 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
39 131 0.65
40 57 0.28
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:44365860 original size:39 final size:39
Alignment explanation
Indices: 44365765--44366026 Score: 320
Period size: 39 Copynumber: 6.6 Consensus size: 39
44365755 TTGAATGATG
*
44365765 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
44365803 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
44365844 TCCAGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
44365883 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
44365922 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
44365961 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
44366000 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
44366027 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
39 131 0.65
40 57 0.28
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:44368480 original size:24 final size:24
Alignment explanation
Indices: 44368423--44368474 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
44368413 TTTTTAGAAG
* **
44368423 ATTTAGTATTTATTATTATAATAT
1 ATTTAGCATTTATTAGAATAATAT
44368447 ATTTAGCATTTATTAGAATAATAT
1 ATTTAGCATTTATTAGAATAATAT
44368471 ATTT
1 ATTT
44368475 GACATTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGAATAATAT
Found at i:44368485 original size:24 final size:24
Alignment explanation
Indices: 44368440--44368486 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
44368430 ATTTATTATT
*
44368440 ATAATATATTTAGCATTTATTAGA
1 ATAATATATTTAGCATTGATTAGA
44368464 ATAATATATTT-GACATTGATTAG
1 ATAATATATTTAG-CATTGATTAG
44368487 TGTTAGGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.45
Consensus pattern (24 bp):
ATAATATATTTAGCATTGATTAGA
Found at i:44368710 original size:24 final size:24
Alignment explanation
Indices: 44368683--44368732 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
44368673 TTCAGTTTTC
44368683 AACAAATTTCTAAATAATTTTAGA
1 AACAAATTTCTAAATAATTTTAGA
* *
44368707 AACATATTTTTAAATAATTTTAGA
1 AACAAATTTCTAAATAATTTTAGA
44368731 AA
1 AA
44368733 TAATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (24 bp):
AACAAATTTCTAAATAATTTTAGA
Found at i:44368735 original size:12 final size:12
Alignment explanation
Indices: 44368694--44368736 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
44368684 ACAAATTTCT
44368694 AAATAATTTTAG
1 AAATAATTTTAG
* *
44368706 AAACATATTTT-T
1 AAATA-ATTTTAG
44368718 AAATAATTTTAG
1 AAATAATTTTAG
44368730 AAATAAT
1 AAATAAT
44368737 ATATATGATA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 5 0.20
12 15 0.60
13 5 0.20
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (12 bp):
AAATAATTTTAG
Found at i:44369142 original size:27 final size:27
Alignment explanation
Indices: 44369110--44369168 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
44369100 AAATAATAAA
44369110 ATTTAA-TTTAATATTAAGATAAATATT
1 ATTTAACTTT-ATATTAAGATAAATATT
* **
44369137 ATTTAACTTTATTTTAATTTAAATATT
1 ATTTAACTTTATATTAAGATAAATATT
44369164 ATTTA
1 ATTTA
44369169 TTTTTAGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (27 bp):
ATTTAACTTTATATTAAGATAAATATT
Found at i:44369398 original size:15 final size:15
Alignment explanation
Indices: 44369375--44369405 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
44369365 AATGTTACAC
*
44369375 ACAATAATATTTAAT
1 ACAAAAATATTTAAT
44369390 ACAAAAATATTTAAT
1 ACAAAAATATTTAAT
44369405 A
1 A
44369406 ATTGATAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (15 bp):
ACAAAAATATTTAAT
Found at i:44369578 original size:22 final size:21
Alignment explanation
Indices: 44369540--44369580 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
44369530 TATTATTTGT
*
44369540 ACATTTTTGTAATTTAAATGG
1 ACATTTTTGTAAATTAAATGG
44369561 ACATTTTTGTAAAATTAAAT
1 ACATTTTTGT-AAATTAAAT
44369581 TACTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (21 bp):
ACATTTTTGTAAATTAAATGG
Found at i:44372938 original size:131 final size:129
Alignment explanation
Indices: 44372775--44373119 Score: 406
Period size: 129 Copynumber: 2.7 Consensus size: 129
44372765 GCTGTCATCA
* * * * *
44372775 TAAATCAACGAGCCTTAATAATACTAGTTGTGAACTTAAATCAATGAGCTGTTCAAAATAGCGAT
1 TAAATCAGCGAGCCTTAATAATATTAGTTGTGAACTTAAATCAATGAGCTGTTTAGAGTAGCGAT
* * ** *
44372840 AGAAAATTAGCTAACTCATAAAAGATTTTTCATGATATTAAAT-AAATTGAACTTAGGTTGTGAT
66 AGAAAATCAGCTAACTCAGAAAA-A-AATTCATGATAGTAAATCAAA-TGAACTTAGGTTGTGAT
44372904 CG
128 CG
* * * *
44372906 TAAATCAGCGAGCCTTAATAATATTAGTTGTGATCTTAAATCAGTGAGCTGTTTAGTGTACCGAT
1 TAAATCAGCGAGCCTTAATAATATTAGTTGTGAACTTAAATCAATGAGCTGTTTAGAGTAGCGAT
** * *
44372971 AGTGAATCAGCTAACTCAGAAAAAAATTCATGATAGTAAATCAAATGATCTTTGGTTGTGATCG
66 AGAAAATCAGCTAACTCAGAAAAAAATTCATGATAGTAAATCAAATGAACTTAGGTTGTGATCG
* * * * * * *
44373035 TAAATTAGTGAGCCTTAATAATATCAATTGT-AATCTTAAATAAATGAGCTATTTGGAGTAGCGA
1 TAAATCAGCGAGCCTTAATAATATTAGTTGTGAA-CTTAAATCAATGAGCTGTTTAGAGTAGCGA
*
44373099 TAGAAAATCAACTAACTCAGA
65 TAGAAAATCAGCTAACTCAGA
44373120 CAAGGTCGTT
Statistics
Matches: 180, Mismatches: 32, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
128 1 0.01
129 100 0.56
130 4 0.02
131 75 0.42
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (129 bp):
TAAATCAGCGAGCCTTAATAATATTAGTTGTGAACTTAAATCAATGAGCTGTTTAGAGTAGCGAT
AGAAAATCAGCTAACTCAGAAAAAAATTCATGATAGTAAATCAAATGAACTTAGGTTGTGATCG
Found at i:44374616 original size:18 final size:18
Alignment explanation
Indices: 44374593--44374629 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
44374583 GATAGTTTGA
*
44374593 TATTCGATTTATTCAAAT
1 TATTCGAGTTATTCAAAT
*
44374611 TATTCGAGTTATTCGAAT
1 TATTCGAGTTATTCAAAT
44374629 T
1 T
44374630 TGATAACCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.49
Consensus pattern (18 bp):
TATTCGAGTTATTCAAAT
Found at i:44381391 original size:23 final size:23
Alignment explanation
Indices: 44381349--44381470 Score: 156
Period size: 23 Copynumber: 5.3 Consensus size: 23
44381339 AGTGTAATTG
* *
44381349 ATCAGTTGTAGCTTCAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * *
44381372 TTTAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
44381395 ATCAGTGGTAGTTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
44381418 TTCAGTGGTAGCTAT-GGCTACGT
1 ATCAGTGGTAGCT-TCGGCTACAT
44381441 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
44381464 ATCAGTG
1 ATCAGTG
44381471 TGGCACTTAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
22 1 0.01
23 81 0.98
24 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:44381417 original size:46 final size:46
Alignment explanation
Indices: 44381349--44381470 Score: 181
Period size: 46 Copynumber: 2.7 Consensus size: 46
44381339 AGTGTAATTG
* * *
44381349 ATCAGTTGTAGCTTCAGCTACATTTTAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
* * *
44381395 ATCAGTGGTAGTTTCGGCTACATTTCAGTGGTAGCTATGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
*
44381441 ATCAGTGGTAGCTTCGGCTACATATCAGTG
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTG
44381471 TGGCACTTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
Found at i:44385161 original size:30 final size:30
Alignment explanation
Indices: 44385125--44385184 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
44385115 TACAAGATTG
44385125 CCCTAATTCACCACTATATAAACCCCTCTC
1 CCCTAATTCACCACTATATAAACCCCTCTC
44385155 CCCTAATTCACCACTATATAAACCCCTCTC
1 CCCTAATTCACCACTATATAAACCCCTCTC
44385185 TACTATCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.43, G:0.00, T:0.27
Consensus pattern (30 bp):
CCCTAATTCACCACTATATAAACCCCTCTC
Found at i:44400242 original size:20 final size:20
Alignment explanation
Indices: 44400217--44400285 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 20
44400207 TTTTTTTTGT
44400217 TTATTTTATTTATTATTATA
1 TTATTTTATTTATTATTATA
*
44400237 TTATTTT-TCTTATTATGTTAGA
1 TTATTTTAT-TTATTA--TTATA
*
44400259 TTTATTTTA-TTGTTATTATTA
1 -TTATTTTATTTATTATTA-TA
44400280 TTATTT
1 TTATTT
44400286 CCATTTTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
19 1 0.03
20 22 0.55
21 1 0.03
22 9 0.22
23 7 0.17
ACGTcount: A:0.25, C:0.01, G:0.04, T:0.70
Consensus pattern (20 bp):
TTATTTTATTTATTATTATA
Found at i:44407936 original size:8 final size:8
Alignment explanation
Indices: 44407923--44407957 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
44407913 CTCCTTTTTA
44407923 TTAAATAT
1 TTAAATAT
44407931 TTAAATAT
1 TTAAATAT
*
44407939 CTAATATAT
1 TTAA-ATAT
44407948 TTAAATAT
1 TTAAATAT
44407956 TT
1 TT
44407958 GGCTAATTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 17 0.71
9 7 0.29
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (8 bp):
TTAAATAT
Found at i:44409428 original size:114 final size:114
Alignment explanation
Indices: 44409136--44409812 Score: 905
Period size: 114 Copynumber: 5.9 Consensus size: 114
44409126 AACGCGTTGC
* * * * *
44409136 AAAATACCTAAGCCCAATGACGCCGTTTTCTAAGCTTTCGGGGATTTATCGGCGTTTTTAA-TAA
1 AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGT-A
*
44409200 AGCGCCGCTAATGCTCAGGGCTTTAGCAGCGTTTTTGATAAAGCGCCACAAA
65 AGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGATAAAGCGCCAC--A
* * *
44409252 AAAAAACCTAAGCCCAATGACGCCGTTTTCTGAGCTTTGGGGGATTTAGCGGCGTTTTTAAGTAA
1 AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGTAA
** *
44409317 GCGCCGCTAATGCTCAGGGCTTTAGTAGCGTTTTTGATAAAGCGCCTCA
66 GCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGATAAAGCGCCACA
* * **
44409366 AAAAAACCTAAGCCTAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCATTTTTAAGTTC
1 AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGTAA
* * * *
44409431 GTGCCGCTAATGCCCAAGGCTTTAGCGGCATTTTTGATAAAGCGCCACA
66 GCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGATAAAGCGCCACA
* * *
44409480 AAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCTTTCGTGGATTTAGCGGCGTTTTTAAGTAA
1 AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGTAA
*
44409545 GCGCCGCTAAAAATGCTCAGGGCTTTAGCGGTGTTTTTGATAAAGCGCCACA
66 GCGCCGCT---AATGCTCAGGGCTTTAGCGGCGTTTTTGATAAAGCGCCACA
* * * *
44409597 GAAAAACCTCAGCCCAACGACGCCGTTTTTTGAGCTTTTGGGGATTTAGCGGCATTTTTAAGTAC
1 AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGTA-
**
44409662 A-CGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGA-AAAGCGCTGC-
65 AGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTT-GATAAAGCGCCACA
* **
44409710 AAAAAACCTAAGCCCAACGACGCCGTTTTCTTAGCTTTCGGGGATTTAGTAGCATTTTTTAA-TA
1 AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCA-TTTTTAAGT-
* * *
44409774 AAGCGCCGCTAATGCTCAGTGCTTTAGTGGCATTTTTGA
64 AAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGA
44409813 GGATGCGCCG
Statistics
Matches: 500, Mismatches: 52, Indels: 21
0.87 0.09 0.04
Matches are distributed among these distances:
113 51 0.10
114 239 0.48
115 2 0.00
116 105 0.21
117 102 0.20
118 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (114 bp):
AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGTAA
GCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGATAAAGCGCCACA
Found at i:44409646 original size:231 final size:228
Alignment explanation
Indices: 44409136--44409800 Score: 924
Period size: 231 Copynumber: 2.9 Consensus size: 228
44409126 AACGCGTTGC
* * * *
44409136 AAAATACCTAAGCCCAATGACGCCGTTTTCTAAGCTTTCGGGGATTTATCGGCGTTTTTAA-TAA
1 AAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCATTTTTAAGT-A
* *
44409200 AGCGCCGCTAATGCTCAGGGCTTTAGCAGCGTTTTTGATAAAGCGCCACAAAAAAAAACCTAAGC
65 CGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGATAAAGCGCCAC--AAAAAAACCTAAGC
* *
44409265 CCAATGACGCCGTTTTCTGAGCTTTGGGGGATTTAGCGGCGTTTTTAAGTAAGCGCCGCTAATGC
128 CCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGTAAGCGCCGCTAATGC
* *
44409330 TCAGGGCTTTAGTAGCGTTTTTGATAAAGCGCCTCA
193 TCAGGGCTTTAGCAGCGTTTTTGATAAAGCGCCACA
* *
44409366 AAAAAACCTAAGCCTAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCATTTTTAAGTTC
1 AAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCATTTTTAAGTAC
* * * *
44409431 GTGCCGCTAATGCCCAAGGCTTTAGCGGCATTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCA
66 GCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCA
* *
44409496 ACGACGTCGTTTTCTGAGCTTTCGTGGATTTAGCGGCGTTTTTAAGTAAGCGCCGCTAAAAATGC
131 ACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGTAAGCGCCGCT---AATGC
* *
44409561 TCAGGGCTTTAGCGGTGTTTTTGATAAAGCGCCACA
193 TCAGGGCTTTAGCAGCGTTTTTGATAAAGCGCCACA
* * * * *
44409597 GAAAAACCTCAGCCCAACGACGCCGTTTTTTGAGCTTTTGGGGATTTAGCGGCATTTTTAAGTAC
1 AAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCATTTTTAAGTAC
* **
44409662 ACGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGA-AAAGCGCTGC-AAAAAACCTAAGCCC
66 GCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTT-GATAAAGCGCCACAAAAAAACCTAAGCCC
* ** *
44409725 AACGACGCCGTTTTCTTAGCTTTCGGGGATTTAGTAGCATTTTTTAA-TAAAGCGCCGCTAATGC
130 AACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGC-GTTTTTAAGT-AAGCGCCGCTAATGC
*
44409789 TCAGTGCTTTAG
193 TCAGGGCTTTAG
44409801 TGGCATTTTT
Statistics
Matches: 387, Mismatches: 41, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
228 86 0.22
230 148 0.38
231 151 0.39
232 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (228 bp):
AAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCATTTTTAAGTAC
GCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCA
ACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGTAAGCGCCGCTAATGCTCA
GGGCTTTAGCAGCGTTTTTGATAAAGCGCCACA
Found at i:44410406 original size:14 final size:15
Alignment explanation
Indices: 44410375--44410449 Score: 57
Period size: 14 Copynumber: 5.1 Consensus size: 15
44410365 AAGTTTTATA
44410375 GATTATGGAATTAAG
1 GATTATGGAATTAAG
*
44410390 GATTATGG-ATTAGG
1 GATTATGGAATTAAG
* *
44410404 GATTCTGG-TTTAAG
1 GATTATGGAATTAAG
* *
44410418 GGTTAATGTGATTTAAG
1 GATT-ATG-GAATTAAG
*
44410435 GTTTATGG-ATTAAG
1 GATTATGGAATTAAG
44410449 G
1 G
44410450 GTTAGGGGTT
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
14 25 0.51
15 11 0.22
16 4 0.08
17 9 0.18
ACGTcount: A:0.29, C:0.01, G:0.31, T:0.39
Consensus pattern (15 bp):
GATTATGGAATTAAG
Found at i:44410434 original size:17 final size:16
Alignment explanation
Indices: 44410412--44410453 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
44410402 GGGATTCTGG
44410412 TTTAAGGGTTAATGTGA
1 TTTAAGGGTTAATG-GA
*
44410429 TTTAA-GGTTTATGGA
1 TTTAAGGGTTAATGGA
44410444 -TTAAGGGTTA
1 TTTAAGGGTTA
44410454 GGGGTTAGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 4 0.18
15 6 0.27
16 7 0.32
17 5 0.23
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (16 bp):
TTTAAGGGTTAATGGA
Found at i:44410466 original size:45 final size:46
Alignment explanation
Indices: 44410385--44410472 Score: 108
Period size: 45 Copynumber: 1.9 Consensus size: 46
44410375 GATTATGGAA
** *
44410385 TTAAGGATTATGGATTAGGGATTCTGGTTTAAGGGTTA-ATGTGAT
1 TTAAGGATTATGGATTAGGGATTAGGGGTTAAGGGTTAGATGTGAT
* *
44410430 TTAAGGTTTATGGATTAAGGG-TTAGGGGTTAGGGGTTAGATGT
1 TTAAGGATTATGGATT-AGGGATTAGGGGTTAAGGGTTAGATGT
44410473 TAAGAGTTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
45 28 0.78
46 8 0.22
ACGTcount: A:0.25, C:0.01, G:0.35, T:0.39
Consensus pattern (46 bp):
TTAAGGATTATGGATTAGGGATTAGGGGTTAAGGGTTAGATGTGAT
Found at i:44410582 original size:7 final size:7
Alignment explanation
Indices: 44410572--44410608 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
44410562 TAAGGTTTAA
44410572 GGGTTAG
1 GGGTTAG
44410579 GGGTTAG
1 GGGTTAG
44410586 GGGTTAG
1 GGGTTAG
*
44410593 GGGTTAA
1 GGGTTAG
44410600 GGGTTAG
1 GGGTTAG
44410607 GG
1 GG
44410609 ATTTAGGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.16, C:0.00, G:0.57, T:0.27
Consensus pattern (7 bp):
GGGTTAG
Found at i:44410591 original size:14 final size:14
Alignment explanation
Indices: 44410568--44410608 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
44410558 TAAATAAGGT
44410568 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
*
44410582 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
44410596 TTAAGGGTTAGGG
1 TTAAGGGTTAGGG
44410609 ATTTAGGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.51, T:0.29
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:44410716 original size:109 final size:108
Alignment explanation
Indices: 44410491--44410723 Score: 301
Period size: 109 Copynumber: 2.1 Consensus size: 108
44410481 AGGGATTTAG
* *
44410491 GGTTTAGGGATTCAGTGTTTGGTTAGAGTTTAGGGTTTAGATTAATTAGTGTGTTTTAATTATAT
1 GGTTTAGGGATTTAG-GTTGGGTTAGAGTTTAGGGTTTAGATTAATTAGTGTGTTTTAATTATAT
* * *
44410556 AATAAATAAGGTTTAAGGGTTAGGGGTTAGGGGTTAGGGGTTAA
65 AATAAATAAAGTTTAAGGGTTAGGGGTTAGGGATTAGAGGTTAA
* * *
44410600 GGGTTAGGGATTTAGGATTGGGTTATG-GTTTAGGGTTTAGTTTAATTAGTGTTTTTTAATTTAT
1 GGTTTAGGGATTTAGG-TTGGGTTA-GAGTTTAGGGTTTAGATTAATTAGTGTGTTTTAA-TTAT
* * * *
44410664 ATATTAAATAAAGTTTAGGGGTTAGGGGTTAGGGATTTGAGGTTGA
63 ATAATAAATAAAGTTTAAGGGTTAGGGGTTAGGGATTAGAGGTTAA
44410710 -GTTTAGGG-TTTAGG
1 GGTTTAGGGATTTAGG
44410724 GTTTAGATTA
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
108 7 0.06
109 57 0.53
110 44 0.41
ACGTcount: A:0.25, C:0.00, G:0.33, T:0.42
Consensus pattern (108 bp):
GGTTTAGGGATTTAGGTTGGGTTAGAGTTTAGGGTTTAGATTAATTAGTGTGTTTTAATTATATA
ATAAATAAAGTTTAAGGGTTAGGGGTTAGGGATTAGAGGTTAA
Found at i:44410739 original size:90 final size:89
Alignment explanation
Indices: 44410589--44410852 Score: 395
Period size: 90 Copynumber: 3.0 Consensus size: 89
44410579 GGGTTAGGGG
* * *
44410589 TTAGGGGTTAAGGGTTAGGGATTTAGGATTG-GGTTATGGTTTAGGGTTTAGTTTAATTAGTGTT
1 TTAGGGGTTAGGGGTTAGGGATTTAGG-TTGAGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTT
44410653 TTTTAATTTATATATTAAATAAAGT
65 TTTTAATTTATATATTAAATAAAGT
*
44410678 TTAGGGGTTAGGGGTTAGGGATTTGAGGTTGAGTTTAGGGTTTAGGGTTTAGATTAATTAGTGTT
1 TTAGGGGTTAGGGGTTAGGGATTT-AGGTTGAGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTT
*
44410743 TGTTAATTTATATATTAAATAAAGT
65 TTTTAATTTATATATTAAATAAAGT
* * * * * **
44410768 TTAGGAGTTAGGGGTTAGGGATTTAGGGTCAGGTTAGGGTTTAAGATTTAGATTAATTAGTACTT
1 TTAGGGGTTAGGGGTTAGGGATTTAGGTTGAGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTTT
44410833 TTTAATTTATATATTAAATA
66 TTTAATTTATATATTAAATA
44410853 GGTTCTTTAT
Statistics
Matches: 159, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
89 79 0.50
90 80 0.50
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.44
Consensus pattern (89 bp):
TTAGGGGTTAGGGGTTAGGGATTTAGGTTGAGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTTT
TTTAATTTATATATTAAATAAAGT
Found at i:44411383 original size:84 final size:84
Alignment explanation
Indices: 44411277--44411442 Score: 226
Period size: 84 Copynumber: 2.0 Consensus size: 84
44411267 GTTTTTAATA
** * *
44411277 AAAACGCCGCAAGGATTTATTAAAATTTGCCAGA-GCGACGCCGTTTCTGTACTGGAATAAAATC
1 AAAACGCCGCAAGGATGAATTAAAATTTGCCA-ATACGACGCCGTTTCTCTACTGGAATAAAATC
*
44411341 TTATAGTGGCGTTTTTTAGG
65 TTATAGTGGCATTTTTTAGG
* ** **
44411361 AAAACGCCGCAAGGGTGAATTAATGTTTGCCAATACGGTGCCGTTTCTCTACTGGAATAAAATCT
1 AAAACGCCGCAAGGATGAATTAAAATTTGCCAATACGACGCCGTTTCTCTACTGGAATAAAATCT
44411426 TATAGTGGCATTTTTTA
66 TATAGTGGCATTTTTTA
44411443 AGCCGCAATA
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
83 1 0.01
84 70 0.99
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32
Consensus pattern (84 bp):
AAAACGCCGCAAGGATGAATTAAAATTTGCCAATACGACGCCGTTTCTCTACTGGAATAAAATCT
TATAGTGGCATTTTTTAGG
Found at i:44412979 original size:12 final size:12
Alignment explanation
Indices: 44412962--44412990 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
44412952 ATACTTACAT
44412962 AACTTATATATA
1 AACTTATATATA
44412974 AACTTATATATA
1 AACTTATATATA
44412986 AACTT
1 AACTT
44412991 GCATAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.41
Consensus pattern (12 bp):
AACTTATATATA
Found at i:44413004 original size:9 final size:9
Alignment explanation
Indices: 44412986--44413329 Score: 130
Period size: 9 Copynumber: 39.8 Consensus size: 9
44412976 CTTATATATA
*
44412986 AACTTGCAT
1 AACTTACAT
44412995 AACTTACAT
1 AACTTACAT
*
44413004 AA-TAACATAAT
1 AACTTAC---AT
44413015 AACTTACAT
1 AACTTACAT
*
44413024 AA--TACAC
1 AACTTACAT
44413031 AACTTACAT
1 AACTTACAT
*
44413040 AACTTAAAT
1 AACTTACAT
44413049 AACTTACAT
1 AACTTACAT
*
44413058 -A-GTACAT
1 AACTTACAT
**
44413065 AACTTTGAT
1 AACTTACAT
*
44413074 AACTAACAT
1 AACTTACAT
* *
44413083 TA--TACAC
1 AACTTACAT
*
44413090 AAGTTACAT
1 AACTTACAT
44413099 AA--TACAT
1 AACTTACAT
**
44413106 TTCTTACAT
1 AACTTACAT
44413115 AACTTACAT
1 AACTTACAT
*
44413124 AA--TACAC
1 AACTTACAT
44413131 AACTTA-ATT
1 AACTTACA-T
*
44413140 AATATTATACAT
1 -A-ACT-TACAT
*
44413152 AACATACAT
1 AACTTACAT
*
44413161 AA--TGCAT
1 AACTTACAT
*
44413168 AA--TACAC
1 AACTTACAT
44413175 AACTTA-ATT
1 AACTTACA-T
*
44413184 AATATTATACAT
1 -A-ACT-TACAT
*
44413196 AACATACAT
1 AACTTACAT
*
44413205 AA-TACACAT
1 AACT-TACAT
44413214 AACTTACAT
1 AACTTACAT
*
44413223 -A-GTACAT
1 AACTTACAT
*
44413230 AACTAACAT
1 AACTTACAT
*
44413239 AA--TACAC
1 AACTTACAT
*
44413246 AACTTACGT
1 AACTTACAT
*
44413255 AACTTAAAT
1 AACTTACAT
44413264 AACTTACAT
1 AACTTACAT
*
44413273 AGCTTACAT
1 AACTTACAT
44413282 AA--TACAT
1 AACTTACAT
44413289 AACTTACAT
1 AACTTACAT
44413298 AACTT-CTAT
1 AACTTAC-AT
44413307 AA--TACAT
1 AACTTACAT
44413314 AACTTACAT
1 AACTTACAT
*
44413323 AATTTAC
1 AACTTAC
44413330 CTAATACATA
Statistics
Matches: 246, Mismatches: 51, Indels: 76
0.66 0.14 0.20
Matches are distributed among these distances:
7 59 0.24
8 11 0.04
9 150 0.61
10 5 0.02
11 10 0.04
12 9 0.04
13 2 0.01
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:44413043 original size:25 final size:25
Alignment explanation
Indices: 44412986--44413337 Score: 96
Period size: 25 Copynumber: 14.0 Consensus size: 25
44412976 CTTATATATA
*
44412986 AACTTGCATAACTTACATAATA-AC
1 AACTTACATAACTTACATAATACAC
44413010 -A--TA-ATAACTTACATAATACAC
1 AACTTACATAACTTACATAATACAC
*
44413031 AACTTACATAACTTAAATAACTTACA-
1 AACTTACATAACTTACATAA--TACAC
* * **
44413057 TA-GTACATAACTTTGATAACTA-AC
1 AACTTACATAACTTACATAA-TACAC
* * * *
44413081 -ATTATACACAAGTTACATAATACAT
1 AACT-TACATAACTTACATAATACAC
**
44413106 TTCTTACATAACTTACATAATACAC
1 AACTTACATAACTTACATAATACAC
* *
44413131 AACTTA-ATTAATATTATACATAACATACAT
1 AACTTACA-T-A-ACT-TACAT-A-ATACAC
*
44413161 AATGCATAATACACAACTTA-AT--TA-A-
1 AA--C-T--TACATAACTTACATAATACAC
* * *
44413186 TATTATACATAACATACATAATACAC
1 AACT-TACATAACTTACATAATACAC
*
44413212 ATAACTTACAT-A-GTACATAACTA-AC
1 --AACTTACATAACTTACATAA-TACAC
* * * * *
44413237 ATA-ATACACAACTTACGTAACTTAAAT
1 A-ACTTACATAACTTACATAA--TACAC
* *
44413264 AACTTACATAGCTTACATAATACAT
1 AACTTACATAACTTACATAATACAC
*
44413289 AACTTACATAACTT-CTATAATACAT
1 AACTTACATAACTTAC-ATAATACAC
* *
44413314 AACTTACATAATTTACCTAATACA
1 AACTTACATAACTTACATAATACA
44413338 TAAATATATA
Statistics
Matches: 243, Mismatches: 45, Indels: 79
0.66 0.12 0.22
Matches are distributed among these distances:
20 15 0.06
21 13 0.05
22 4 0.02
23 8 0.03
24 12 0.05
25 125 0.51
26 11 0.05
27 28 0.12
28 7 0.03
29 1 0.00
30 7 0.03
31 2 0.01
32 3 0.01
33 3 0.01
34 1 0.00
35 2 0.01
36 1 0.00
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (25 bp):
AACTTACATAACTTACATAATACAC
Found at i:44413055 original size:34 final size:34
Alignment explanation
Indices: 44413012--44413136 Score: 98
Period size: 34 Copynumber: 3.7 Consensus size: 34
44413002 ATAATAACAT
44413012 AATAACTTACATAATACACAACTTACATAACTTA
1 AATAACTTACATAATACACAACTTACATAACTTA
* * **
44413046 AATAACTTACATAGTACATAACTTTGATAAC-TA
1 AATAACTTACATAATACACAACTTACATAACTTA
* * * **
44413079 ACATTA--TACACAAGTTACATAA--TACATTTCTTA
1 A-ATAACTTACATAA--TACACAACTTACATAACTTA
*
44413112 CATAACTTACATAATACACAACTTA
1 AATAACTTACATAATACACAACTTA
44413137 ATTAATATTA
Statistics
Matches: 68, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
32 18 0.26
33 5 0.07
34 45 0.66
ACGTcount: A:0.46, C:0.19, G:0.02, T:0.32
Consensus pattern (34 bp):
AATAACTTACATAATACACAACTTACATAACTTA
Found at i:44413097 original size:41 final size:41
Alignment explanation
Indices: 44413052--44413325 Score: 114
Period size: 41 Copynumber: 6.8 Consensus size: 41
44413042 CTTAAATAAC
* ** *
44413052 TTACATAGTACATAACTTTGATAACTAACATTATACACAAG
1 TTACATAATACATAACTTACATAACTAACATAATACACAAG
** * *
44413093 TTACATAATACATTTCTTACATAACTTACATAATACACAAC
1 TTACATAATACATAACTTACATAACTAACATAATACACAAG
* * * *
44413134 TTAATTAATATTATACATAACATACATAA-T-GCATAATACACAAC
1 TT-A--CATA--ATACATAACTTACATAACTAACATAATACACAAG
*
44413178 TTA-AT--TA-AT-ATTATACATAAC-ATACATAATACAC-A-
1 TTACATAATACATAACT-TACATAACTA-ACATAATACACAAG
* * *
44413213 TAAC-T--TACAT-A-GTACATAACTAACATAATACACAAC
1 TTACATAATACATAACTTACATAACTAACATAATACACAAG
* * * * * *
44413249 TTACGTAACTTAAATAACTTACATAGCTTACATAATACATAAC
1 TTACATAA--TACATAACTTACATAACTAACATAATACACAAG
* *
44413292 TTACATAACTTCTATAA--TACATAACTTACATAAT
1 TTACATAA-TAC-ATAACTTACATAACTAACATAAT
44413326 TTACCTAATA
Statistics
Matches: 182, Mismatches: 29, Indels: 44
0.71 0.11 0.17
Matches are distributed among these distances:
34 20 0.11
35 16 0.09
36 9 0.05
37 11 0.06
40 2 0.01
41 55 0.30
42 3 0.02
43 33 0.18
44 18 0.10
45 1 0.01
46 14 0.08
ACGTcount: A:0.47, C:0.18, G:0.03, T:0.32
Consensus pattern (41 bp):
TTACATAATACATAACTTACATAACTAACATAATACACAAG
Found at i:44413129 original size:16 final size:16
Alignment explanation
Indices: 44413110--44413325 Score: 108
Period size: 16 Copynumber: 13.1 Consensus size: 16
44413100 ATACATTTCT
44413110 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
44413126 TACACAACTTAATTAATATTA
1 TACATAACTT-A--CATA--A
*
44413147 TACATAACATACATAA
1 TACATAACTTACATAA
* *
44413163 TGCATAA--TACA-CA
1 TACATAACTTACATAA
*
44413176 -ACTTAA-TTA-ATATTA
1 TACATAACTTACATA--A
*
44413191 TACATAACATACATAA
1 TACATAACTTACATAA
*
44413207 TACACATAACTTACATAG
1 T--ACATAACTTACATAA
*
44413225 TACATAACTAACATAA
1 TACATAACTTACATAA
* *
44413241 TACACAACTTACGTAA
1 TACATAACTTACATAA
* *
44413257 CTTAAATAACTTACATAGCT
1 --TACATAACTTACATA--A
44413277 TACATAA--TACATAA
1 TACATAACTTACATAA
44413291 CTTACATAACTT-CTATAA
1 --TACATAACTTAC-ATAA
44413309 TACATAACTTACATAA
1 TACATAACTTACATAA
44413325 T
1 T
44413326 TTACCTAATA
Statistics
Matches: 151, Mismatches: 25, Indels: 48
0.67 0.11 0.21
Matches are distributed among these distances:
12 5 0.03
13 3 0.02
14 4 0.03
15 1 0.01
16 77 0.51
17 5 0.03
18 43 0.28
19 3 0.02
20 1 0.01
21 9 0.06
ACGTcount: A:0.48, C:0.19, G:0.02, T:0.31
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:44413177 original size:44 final size:44
Alignment explanation
Indices: 44413121--44413207 Score: 174
Period size: 44 Copynumber: 2.0 Consensus size: 44
44413111 ACATAACTTA
44413121 CATAATACACAACTTAATTAATATTATACATAACATACATAATG
1 CATAATACACAACTTAATTAATATTATACATAACATACATAATG
44413165 CATAATACACAACTTAATTAATATTATACATAACATACATAAT
1 CATAATACACAACTTAATTAATATTATACATAACATACATAAT
44413208 ACACATAACT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.51, C:0.16, G:0.01, T:0.32
Consensus pattern (44 bp):
CATAATACACAACTTAATTAATATTATACATAACATACATAATG
Found at i:44413338 original size:25 final size:24
Alignment explanation
Indices: 44413262--44413340 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 24
44413252 CGTAACTTAA
**
44413262 ATAACTTACATAGCTTACATAATAC
1 ATAACTTACATAATTTAC-TAATAC
44413287 ATAACTTACATAACTTCTA-TAATAC
1 ATAACTTACATAA-TT-TACTAATAC
44413312 ATAACTTACATAATTTACCTAATAC
1 ATAACTTACATAATTTA-CTAATAC
44413337 ATAA
1 ATAA
44413341 ATATATATCA
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
23 2 0.04
24 2 0.04
25 41 0.85
26 1 0.02
27 2 0.04
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.34
Consensus pattern (24 bp):
ATAACTTACATAATTTACTAATAC
Found at i:44413551 original size:25 final size:26
Alignment explanation
Indices: 44413521--44413584 Score: 103
Period size: 25 Copynumber: 2.5 Consensus size: 26
44413511 CATAATAACT
44413521 TACATAACTTAATAACTCATA-TATA
1 TACATAACTTAATAACTCATATTATA
* *
44413546 TGCATAACTTAATAACTCATATTATT
1 TACATAACTTAATAACTCATATTATA
44413572 TACATAACTTAAT
1 TACATAACTTAAT
44413585 CATTGTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
25 20 0.57
26 15 0.43
ACGTcount: A:0.44, C:0.16, G:0.02, T:0.39
Consensus pattern (26 bp):
TACATAACTTAATAACTCATATTATA
Found at i:44415325 original size:43 final size:43
Alignment explanation
Indices: 44415269--44415494 Score: 276
Period size: 43 Copynumber: 5.3 Consensus size: 43
44415259 CATCAGACAA
* *
44415269 TAGCGGCGTTTGTGAGGGAAGCGCCGCTAAAGAATATGAACTT
1 TAGCGGCGTTTGTGAGAGAAGCGCCGCTAAAGAACATGAACTT
* **
44415312 TAGCGGCGTTTGTGAGAAAAGCGCCTTTAAAGAACATG-ACATT
1 TAGCGGCGTTTGTGAGAGAAGCGCCGCTAAAGAACATGAAC-TT
* * *
44415355 TAGCGGCGTTTGTGAAAGAGGCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTGAGAGAAGCGCCGCTAAAGAACATGAACTT
* * * *
44415398 TAGCAGCGTTTGTGAGAGAAGCGCCACTAAAAAACATGACCTT
1 TAGCGGCGTTTGTGAGAGAAGCGCCGCTAAAGAACATGAACTT
* * **
44415441 TAGCGGCATTTGTGAGA-AATGCGCCGCTAAAAAACATGTTCTT
1 TAGCGGCGTTTGTGAGAGAA-GCGCCGCTAAAGAACATGAACTT
44415484 TAGCGGCGTTT
1 TAGCGGCGTTT
44415495 ATTTCTATAA
Statistics
Matches: 158, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
42 4 0.03
43 153 0.97
44 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (43 bp):
TAGCGGCGTTTGTGAGAGAAGCGCCGCTAAAGAACATGAACTT
Found at i:44418508 original size:26 final size:26
Alignment explanation
Indices: 44418479--44418528 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
44418469 TGAGAATAGC
44418479 TTTTAAAAAATACTGTGAAAAAATAA
1 TTTTAAAAAATACTGTGAAAAAATAA
* * *
44418505 TTTTGAAAAATACTTTTAAAAAAT
1 TTTTAAAAAATACTGTGAAAAAAT
44418529 TTAGTTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (26 bp):
TTTTAAAAAATACTGTGAAAAAATAA
Found at i:44418513 original size:13 final size:13
Alignment explanation
Indices: 44418479--44418528 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
44418469 TGAGAATAGC
*
44418479 TTTTAAAAAATAC
1 TTTTAAAAAATAA
* *
44418492 TGTGAAAAAATAA
1 TTTTAAAAAATAA
* *
44418505 TTTTGAAAAATAC
1 TTTTAAAAAATAA
44418518 TTTTAAAAAAT
1 TTTTAAAAAAT
44418529 TTAGTTTAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (13 bp):
TTTTAAAAAATAA
Found at i:44425392 original size:17 final size:18
Alignment explanation
Indices: 44425366--44425399 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
44425356 CTAATGAACA
*
44425366 AATAATCAAT-CAATACC
1 AATAAGCAATACAATACC
44425383 AATAAGCAATACAATAC
1 AATAAGCAATACAATAC
44425400 ACATGAGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.56, C:0.21, G:0.03, T:0.21
Consensus pattern (18 bp):
AATAAGCAATACAATACC
Found at i:44427542 original size:41 final size:42
Alignment explanation
Indices: 44427442--44427543 Score: 118
Period size: 44 Copynumber: 2.4 Consensus size: 42
44427432 TCTTTAATCC
*
44427442 GCTCCACTGCAACTTCAGGGAGATAGAATTGTAGGATGTAATAT
1 GCTCCACTGCAACTTCAGGGAGATAGAATTGTA-CATG-AATAT
* * *
44427486 GCTCCATTGCAACTTCAGGGAGATAAGATTTGT-CATG-ATTT
1 GCTCCACTGCAACTTCAGGGAGAT-AGAATTGTACATGAATAT
*
44427527 GCTCTACTGCAACTTCA
1 GCTCCACTGCAACTTCA
44427544 TAGACATAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
41 18 0.35
43 3 0.06
44 23 0.45
45 7 0.14
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (42 bp):
GCTCCACTGCAACTTCAGGGAGATAGAATTGTACATGAATAT
Found at i:44427676 original size:42 final size:44
Alignment explanation
Indices: 44427588--44427694 Score: 130
Period size: 42 Copynumber: 2.5 Consensus size: 44
44427578 ATTCCACTAA
* * *
44427588 AACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGC
1 AACTTCAGGGAGATAAGATTC-CTATCTTCAATCCGCTCCACTGC
*
44427633 AACTTCAGGGAGATAAGACTT-C-A-CTTCAATCCGCTCCATTGC
1 AACTTCAGGGAGATAAGA-TTCCTATCTTCAATCCGCTCCACTGC
*
44427675 AACTTCAGGGAGATAGGATT
1 AACTTCAGGGAGATAAGATT
44427695 ATTGGCTTTA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
41 2 0.04
42 33 0.59
43 1 0.02
44 1 0.02
45 17 0.30
46 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (44 bp):
AACTTCAGGGAGATAAGATTCCTATCTTCAATCCGCTCCACTGC
Found at i:44427735 original size:223 final size:225
Alignment explanation
Indices: 44427273--44427922 Score: 645
Period size: 223 Copynumber: 2.9 Consensus size: 225
44427263 TTTGTCCCGC
* * * * *
44427273 TGCAACTTCAGGGAGATAAGATTCACTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
1 TGCAAATTCAGGGAGATAAGATTCGCCATGATCTGCTCTACTGCAACTTCATAGACATAAGATCT
* *** * * ** ** * * * *
44427338 GTAACCCAT--CTTCAATCTGCTCCACTGCAATTTCAAGGAAGTGAGA-TCTGCTGTCTTCAGTC
66 GTGATTTATAACTTTAATTTATTCCACTAAAACTTCAAGGAAATAAGATTC-GCTATCTTCAGTC
* * * * ** ** *
44427400 TACTCCATTGCAACTTCAAGGG-G--AGA-CTGTTGTCTTTAATCCGCTCCACTGCAACTTCAGG
130 TAATCCACTACAACTTC-AGGGAGATAAATCACTTCACTTCAATCCGCTCCACTGCAACTTCAGG
* * *
44427461 GAGATAGAATTGTAGGATGTAATATGCTCCAT
194 GAGATAGGATTATAGGATGTAATATGCTCCAG
* * * *
44427493 TGCAACTTCAGGGAGATAAGATTTGTCATGATTTGCTCTACTGCAACTTCATAGACATAAGATCT
1 TGCAAATTCAGGGAGATAAGATTCGCCATGATCTGCTCTACTGCAACTTCATAGACATAAGATCT
* *
44427558 GTGATTTGTAACTTTAATTTATTCCACTAAAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCT
66 GTGATTTATAACTTTAATTTATTCCACTAAAACTTCAAGGAAATAAGATTCGCTATCTTCAGTCT
** * * *
44427623 GCTCCACTGCAACTTCAGGGAGAT-AA-GACTTCACTTCAATCCGCTCCATTGCAACTTCAGGGA
131 AATCCACTACAACTTCAGGGAGATAAATCACTTCACTTCAATCCGCTCCACTGCAACTTCAGGGA
* * * * *
44427686 GATAGGATTATTGGCTTTAATTTG-TTCAGG
196 GATAGGATTATAGGATGTAATATGCTCCA-G
* * * *
44427716 TGCAAATTCAGGGAGATAAGATTCGCCATGATCTGCTCTATTGCAATTTCATAGAGATAAGATTT
1 TGCAAATTCAGGGAGATAAGATTCGCCATGATCTGCTCTACTGCAACTTCATAGACATAAGATCT
* * ** * * *
44427781 GTGATTTATAGCTTTAATTTGTTCCACTGCAATTTTAAGGAAATAAGATTCGCTATCTTTAGTCT
66 GTGATTTATAACTTTAATTTATTCCACTAAAACTTCAAGGAAATAAGATTCGCTATCTTCAGTCT
*
44427846 AATCCACTACAACTTCAGGGAGATAAAACTTCACTTCACTTCAATCCACTCCACTGCAACTTCAG
131 AATCCACTACAACTTCAGGGAGAT-AAA--TCACTTCACTTCAATCCGCTCCACTGCAACTTCAG
44427911 GGAGATAGGATT
193 GGAGATAGGATT
44427923 CGCCATGATC
Statistics
Matches: 354, Mismatches: 64, Indels: 16
0.82 0.15 0.04
Matches are distributed among these distances:
220 62 0.18
221 4 0.01
222 58 0.16
223 185 0.52
225 2 0.01
228 43 0.12
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (225 bp):
TGCAAATTCAGGGAGATAAGATTCGCCATGATCTGCTCTACTGCAACTTCATAGACATAAGATCT
GTGATTTATAACTTTAATTTATTCCACTAAAACTTCAAGGAAATAAGATTCGCTATCTTCAGTCT
AATCCACTACAACTTCAGGGAGATAAATCACTTCACTTCAATCCGCTCCACTGCAACTTCAGGGA
GATAGGATTATAGGATGTAATATGCTCCAG
Found at i:44427932 original size:184 final size:179
Alignment explanation
Indices: 44427716--44428101 Score: 540
Period size: 184 Copynumber: 2.1 Consensus size: 179
44427706 TTTGTTCAGG
* * * * *
44427716 TGCAAATTCAGGGAGATAAGATTCGCCATGATCTGCTCTATTGCAATTTCATAGAGATAAGATTT
1 TGCAACTTCAGGGAGATAGGATTCGCCATGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCT
* * * * * *
44427781 GTGATTTATAGCTTTAATTTGTTCCACTGCAATTTTAAGGAAATAAGATTCGCTATCTTTAGTCT
66 GTGATTTATAGCATTAATCTATTCCACTGCAATTTCAAGGAAATAAGATTCGCTATCTTCAATCT
44427846 AATCCACTACAACTTCAGGGAGATAAAACTTCACTTCACTTCAATC-CACTCCAC
131 AATCCACTACAACTTCAGGGAGATAAAACTTCAC-T---TT-AATCTCA-TCCAC
44427900 TGCAACTTCAGGGAGATAGGATTCGCCATGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCT
1 TGCAACTTCAGGGAGATAGGATTCGCCATGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCT
* *
44427965 GTGATTTATAGCATTAATCTATTTCACTGCAATTTCAGGGAAATAAGATTCGCTATCTTCAATCT
66 GTGATTTATAGCATTAATCTATTCCACTGCAATTTCAAGGAAATAAGATTCGCTATCTTCAATCT
* * * * *
44428030 ACTCCACTGCAATTTCAGGGAGATAAGACTTCACTTTAATCTGATCCAC
131 AATCCACTACAACTTCAGGGAGATAAAACTTCACTTTAATCTCATCCAC
*
44428079 TGCAACTTTAGGGAGATAGGATT
1 TGCAACTTCAGGGAGATAGGATT
44428102 ATTGGCTTTA
Statistics
Matches: 182, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
179 31 0.17
180 3 0.02
183 1 0.01
184 147 0.81
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.33
Consensus pattern (179 bp):
TGCAACTTCAGGGAGATAGGATTCGCCATGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCT
GTGATTTATAGCATTAATCTATTCCACTGCAATTTCAAGGAAATAAGATTCGCTATCTTCAATCT
AATCCACTACAACTTCAGGGAGATAAAACTTCACTTTAATCTCATCCAC
Found at i:44427993 original size:92 final size:91
Alignment explanation
Indices: 44427716--44428017 Score: 270
Period size: 92 Copynumber: 3.3 Consensus size: 91
44427706 TTTGTTCAGG
* * * * *
44427716 TGCAAATTCAGGGAGATAAGATTCGCCATGATCTGCTCTATTGCAATTTCATAGAGATAAGATTT
1 TGCAATTTCAGGGAAATAAGATTCGCCATGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCT
* *
44427781 GTGATTTATAGCTTTAATTTGTTCCAC
66 GTGATTTATAGC-TTAATCTATTCCAC
* * * * ** * * * *
44427808 TGCAATTTTAAGGAAATAAGATTCGCTATCTTTAGTCTAATCCACTACAACTTCAGGGAGATAA-
1 TGCAATTTCAGGGAAATAAGATTCGC---CATGA-TCTGCTCTATTGCAACTTCAGAGAGATAAG
* * * * * *
44427872 AACT-TCACTT-CA-CTTCAATCCACTCCAC
62 ATCTGTGATTTATAGCTT-AATCTATTCCAC
* * *
44427900 TGCAACTTCAGGGAGATAGGATTCGCCATGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCT
1 TGCAATTTCAGGGAAATAAGATTCGCCATGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCT
*
44427965 GTGATTTATAGCATTAATCTATTTCAC
66 GTGATTTATAGC-TTAATCTATTCCAC
44427992 TGCAATTTCAGGGAAATAAGATTCGC
1 TGCAATTTCAGGGAAATAAGATTCGC
44428018 TATCTTCAAT
Statistics
Matches: 154, Mismatches: 46, Indels: 20
0.70 0.21 0.09
Matches are distributed among these distances:
88 23 0.15
89 6 0.04
90 4 0.03
91 3 0.02
92 85 0.55
93 3 0.02
94 4 0.03
95 5 0.03
96 21 0.14
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (91 bp):
TGCAATTTCAGGGAAATAAGATTCGCCATGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCT
GTGATTTATAGCTTAATCTATTCCAC
Found at i:44428009 original size:407 final size:402
Alignment explanation
Indices: 44427487--44428324 Score: 1192
Period size: 407 Copynumber: 2.1 Consensus size: 402
44427477 ATGTAATATG
* * * * * *
44427487 CTCCATTGCAACTTCAGGGAGATAAGATTTGTCATGATTTGCTCTACTGCAACTTCATAGACATA
1 CTCCACTGCAACTTCAGGGAGATAGGATTCGCCATGATCTGCTCTACTGCAACTTCAGAGACATA
* * *
44427552 AGATCTGTGATTTGTAACTTTAATTTATTCCACTAAAACTTCAGGGAAATAAGATTCGCTATCTT
66 AGATCTGTGATTTATAACATTAATCTATTCCACTAAAACTTCAGGGAAATAAGATTCGCTATCTT
* * * *
44427617 CAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTCACTTCAATCCGCTCCATTGCAACTTCA
131 CAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTCACTTCAATCCGATCCACTGCAACTTCA
* * *
44427682 GGGAGATAGGATTATTGGCTTTAATTTG-TTCAGGTGCAAATTCAGGGAGATAAGATTCGCCATG
196 GGGAGATAGGATTATTGGCTTTAATCTGCTCCA-CTGCAAATTCAGGGAGATAAGATTCGCCATG
* * * * * *
44427746 ATCTGCTCTATTGCAATTTCATAGAGATAAGATTTGTGATTTATAGCTTTAATTTGTTCCACTGC
260 ATCTACTCTACTACAACTTCAGAGAGATAAGATTTGTGATTTATAGCTTTAATCTGTTCCACTGC
* * *
44427811 AATTTTAAGGAAATAAGATTCGCTATCTTTAGTCTAATCCACTACAACTTCAGGGAGATAAAACT
325 AATTTCAAAGAAATAAGATTCGCTATCTTCAGTCTAATCCACTACAACTTCAGGGAGAT--AA--
44427876 TCACTTCACTTCAATCCA
386 -CACTTCACTTCAATCCA
* *
44427894 CTCCACTGCAACTTCAGGGAGATAGGATTCGCCATGATCTGCTCTATTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAGGATTCGCCATGATCTGCTCTACTGCAACTTCAGAGACATA
* * ** *
44427959 AGATCTGTGATTTATAGCATTAATCTATTTCACTGCAATTTCAGGGAAATAAGATTCGCTATCTT
66 AGATCTGTGATTTATAACATTAATCTATTCCACTAAAACTTCAGGGAAATAAGATTCGCTATCTT
* * * *
44428024 CAATCTACTCCACTGCAATTTCAGGGAGATAAGACTTCACTTTAATCTGATCCACTGCAACTTTA
131 CAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTCACTTCAATCCGATCCACTGCAACTTCA
* * *
44428089 GGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTCTCCATGA
196 GGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAAATTCAGGGAGATAAGATTCGCCATGA
*
44428154 TCTACTCTACTACAACTTCAGAGAGATAATATTTGTGATTTATAGCTTTAATCTGTTCCACTGCA
261 TCTACTCTACTACAACTTCAGAGAGATAAGATTTGTGATTTATAGCTTTAATCTGTTCCACTGCA
* ** * *
44428219 ATTTCAAAGAAATAAGATTCGGTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT
326 ATTTCAAAGAAATAAGATTCGCTATCTTCAGTCTAATCCACTACAACTTCAGGGAGATAACACTT
44428284 CACTTCAATCCA
391 CACTTCAATCCA
* *
44428296 CTCTACTGCAACTTCAGGGATATAGGATT
1 CTCCACTGCAACTTCAGGGAGATAGGATT
44428325 ATTGGCTCTA
Statistics
Matches: 383, Mismatches: 47, Indels: 7
0.88 0.11 0.02
Matches are distributed among these distances:
402 43 0.11
405 2 0.01
407 335 0.87
408 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (402 bp):
CTCCACTGCAACTTCAGGGAGATAGGATTCGCCATGATCTGCTCTACTGCAACTTCAGAGACATA
AGATCTGTGATTTATAACATTAATCTATTCCACTAAAACTTCAGGGAAATAAGATTCGCTATCTT
CAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTCACTTCAATCCGATCCACTGCAACTTCA
GGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAAATTCAGGGAGATAAGATTCGCCATGA
TCTACTCTACTACAACTTCAGAGAGATAAGATTTGTGATTTATAGCTTTAATCTGTTCCACTGCA
ATTTCAAAGAAATAAGATTCGCTATCTTCAGTCTAATCCACTACAACTTCAGGGAGATAACACTT
CACTTCAATCCA
Found at i:44428092 original size:42 final size:43
Alignment explanation
Indices: 44428032--44428144 Score: 131
Period size: 44 Copynumber: 2.6 Consensus size: 43
44428022 TTCAATCTAC
*
44428032 TCCACTGCAA-TTTCAGGGAGATAAGA-CTTCACTTTAATCTGA
1 TCCACTGCAACTTT-AGGGAGATAAGATATTCACTTTAATCTGA
* ** *
44428074 TCCACTGCAACTTTAGGGAGATAGGATTATTGGCTTTAATCTGC
1 TCCACTGCAACTTTAGGGAGATAAGA-TATTCACTTTAATCTGA
* *
44428118 TCCACTGTAACTTCAGGGAGATAAGAT
1 TCCACTGCAACTTTAGGGAGATAAGAT
44428145 TCTCCATGAT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 21 0.35
43 4 0.07
44 35 0.58
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (43 bp):
TCCACTGCAACTTTAGGGAGATAAGATATTCACTTTAATCTGA
Found at i:44428491 original size:224 final size:223
Alignment explanation
Indices: 44427894--44428598 Score: 1000
Period size: 223 Copynumber: 3.2 Consensus size: 223
44427884 CTTCAATCCA
* * * *
44427894 CTCCACTGCAACTTCAGGGAGATAGGATTCGCCATGATCTGCTCTATTGCAACTTCAGAGAGATA
1 CTCCACTACAACTTCAGGGAGATAAGATTTGCCATGATCTGCTCTAATGCAACTTCAGAGAGATA
* *
44427959 AGATCTGTGATTTATAGCATTAATCTATTTCACTGCAATTTCAGGGAAATAAGATTCGCTATCTT
66 AGATTTGTGATTTATAGCTTTAATCTATTTCACTGCAATTTCAGGGAAATAAGATTCGCTATCTT
* * * * *
44428024 CAATCTACTCCACTGCAATTTCAGGGAGATAAGACTTCACTTTAATCTGA-TCCACTGCAACTTT
131 CAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTCACTTCAATC-CACTCCACTGCAACTTC
44428088 AGGGAGATAGGATTATTGGCTTTAATCTG
195 AGGGAGATAGGATTATTGGCTTTAATCTG
** * * *
44428117 CTCCACTGTAACTTCAGGGAGATAAGATTCT-CCATGATCTACTCTACTACAACTTCAGAGAGAT
1 CTCCACTACAACTTCAGGGAGATAAGATT-TGCCATGATCTGCTCTAATGCAACTTCAGAGAGAT
* * * ** *
44428181 AATATTTGTGATTTATAGCTTTAATCTGTTCCACTGCAATTTCAAAGAAATAAGATTCGGTATCT
65 AAGATTTGTGATTTATAGCTTTAATCTATTTCACTGCAATTTCAGGGAAATAAGATTCGCTATCT
* *
44428246 TCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTCACTTCAATCCACTCTACTGCAACTTC
130 TCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTCACTTCAATCCACTCCACTGCAACTTC
* *
44428311 AGGGATATAGGATTATTGGCTCTAATCTG
195 AGGGAGATAGGATTATTGGCTTTAATCTG
* * * * *
44428340 CTCCATTACAACTTTAGGGAGATAAGATTTGTCATGAAACTGTTCTAATGCAACTTCAGAGAGAT
1 CTCCACTACAACTTCAGGGAGATAAGATTTGCCATG-ATCTGCTCTAATGCAACTTCAGAGAGAT
* * *
44428405 AAGATTTGTGATTTATAGCTTTAATCTATTTCATTGTAACTTCAGGGAAATAAGATTCGCTATCT
65 AAGATTTGTGATTTATAGCTTTAATCTATTTCACTGCAATTTCAGGGAAATAAGATTCGCTATCT
* * * **
44428470 TCAGTCTACTCCATTGCAACTTTAGGGAGATAAGACTTCACTTCAATCCGCTCCACTAAAACTTC
130 TCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTCACTTCAATCCACTCCACTGCAACTTC
*
44428535 AGGGAGATAGAATTATTGGCTTTAATCTG
195 AGGGAGATAGGATTATTGGCTTTAATCTG
*
44428564 CTCCACTACAACTTCAGGGAGATAAGATTCGCCAT
1 CTCCACTACAACTTCAGGGAGATAAGATTTGCCAT
44428599 CTTCTTCAAT
Statistics
Matches: 422, Mismatches: 56, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
222 2 0.00
223 226 0.54
224 194 0.46
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (223 bp):
CTCCACTACAACTTCAGGGAGATAAGATTTGCCATGATCTGCTCTAATGCAACTTCAGAGAGATA
AGATTTGTGATTTATAGCTTTAATCTATTTCACTGCAATTTCAGGGAAATAAGATTCGCTATCTT
CAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTCACTTCAATCCACTCCACTGCAACTTCA
GGGAGATAGGATTATTGGCTTTAATCTG
Found at i:44429885 original size:49 final size:45
Alignment explanation
Indices: 44429821--44429947 Score: 155
Period size: 45 Copynumber: 2.7 Consensus size: 45
44429811 CCCCTTTCTT
* *
44429821 CTCAAGGCGCCCTTTGCGGGTTTTCACCTTGGCCTCTTTTTTTTTAGGA
1 CTCAAAGCGCCCTTTGCGGGTTTTCACCTTGG----TTTCTTTTTAGGA
* * *
44429870 CTCAAAGCGCTCTTTGTGAGTTTTCACCTTGGTTTCTTTTTAGGA
1 CTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTTTCTTTTTAGGA
* *
44429915 CTTAAAGCACCCTTTGCGGGTTTTCACCTTGGT
1 CTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGT
44429948 CCCTTCTCAT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
45 40 0.59
49 28 0.41
ACGTcount: A:0.13, C:0.24, G:0.21, T:0.41
Consensus pattern (45 bp):
CTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTTTCTTTTTAGGA
Found at i:44430961 original size:11 final size:11
Alignment explanation
Indices: 44430909--44430961 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 11
44430899 GGCCTCTCCT
*
44430909 TTTTCTTTTCC
1 TTTTCTTTTCA
*
44430920 TTTTCTTTTCT
1 TTTTCTTTTCA
**
44430931 TTTTC-CATCA
1 TTTTCTTTTCA
44430941 TTTTCATTTTCA
1 TTTTC-TTTTCA
44430953 TTTTCTTTT
1 TTTTCTTTT
44430962 TAAAATATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.56
12 8 0.24
ACGTcount: A:0.08, C:0.21, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTTCTTTTCA
Found at i:44435794 original size:17 final size:18
Alignment explanation
Indices: 44435768--44435801 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
44435758 CTAATGAACA
*
44435768 AATAATCAAT-CAATACC
1 AATAAGCAATACAATACC
44435785 AATAAGCAATACAATAC
1 AATAAGCAATACAATAC
44435802 ACATGAGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.56, C:0.21, G:0.03, T:0.21
Consensus pattern (18 bp):
AATAAGCAATACAATACC
Found at i:44436315 original size:21 final size:21
Alignment explanation
Indices: 44436277--44436316 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
44436267 ATAAGAGTGA
* *
44436277 TAATTAATAATAATAATAAAT
1 TAATTAATAACAAAAATAAAT
*
44436298 TAATTAATAGCAAAAATAA
1 TAATTAATAACAAAAATAA
44436317 CAAACAGGAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (21 bp):
TAATTAATAACAAAAATAAAT
Found at i:44438174 original size:11 final size:12
Alignment explanation
Indices: 44438143--44438193 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 12
44438133 TAGCTTTTGG
44438143 TTTTTCTCTTTAC
1 TTTTTCT-TTTAC
44438156 TTTCTTCTTTTA-
1 TTT-TTCTTTTAC
44438168 TTTTTCTTTT--
1 TTTTTCTTTTAC
*
44438178 TGTTTCTTTTAC
1 TTTTTCTTTTAC
44438190 TTTT
1 TTTT
44438194 GCTACCGTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
10 9 0.27
11 7 0.21
12 6 0.18
13 7 0.21
14 4 0.12
ACGTcount: A:0.06, C:0.16, G:0.02, T:0.76
Consensus pattern (12 bp):
TTTTTCTTTTAC
Found at i:44446006 original size:15 final size:16
Alignment explanation
Indices: 44445980--44446009 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
44445970 ACGTGATGAA
44445980 AAATTGAAAAAAAATT
1 AAATTGAAAAAAAATT
44445996 AAATT-AAAAAAAAT
1 AAATTGAAAAAAAAT
44446010 AAGAAAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (16 bp):
AAATTGAAAAAAAATT
Found at i:44452081 original size:28 final size:28
Alignment explanation
Indices: 44452041--44452097 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
44452031 ATGCACAATC
44452041 TTGCTATGGCTTTGCCAAAAGAGTTCGA
1 TTGCTATGGCTTTGCCAAAAGAGTTCGA
44452069 TTGCTATGGCTTTGCCAAAAGAGTTCGA
1 TTGCTATGGCTTTGCCAAAAGAGTTCGA
44452097 T
1 T
44452098 CTCATGGCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (28 bp):
TTGCTATGGCTTTGCCAAAAGAGTTCGA
Found at i:44457594 original size:26 final size:27
Alignment explanation
Indices: 44457506--44457593 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
44457496 GGGGTATATA
44457506 GTCATTTTACCATTC-GGAGGTATTTCG
1 GTCATTTTACCATTCAGGA-GTATTTCG
* * *
44457533 ATCATTTTACCCTTCGAGG-GTATTTCT
1 GTCATTTTACCATTC-AGGAGTATTTCG
*
44457560 GTCATTTTACCTTTCAGGAGTATTTCG
1 GTCATTTTACCATTCAGGAGTATTTCG
44457587 GTCATTT
1 GTCATTT
44457594 AACAACCTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
26 3 0.06
27 47 0.90
29 2 0.04
ACGTcount: A:0.18, C:0.19, G:0.18, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCATTCAGGAGTATTTCG
Found at i:44463547 original size:22 final size:23
Alignment explanation
Indices: 44463516--44463559 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
44463506 TAAAAGCTAT
44463516 TTATAAAATCAAATC-TCTAAGA
1 TTATAAAATCAAATCTTCTAAGA
* *
44463538 TTATAGAATCATATCTTCTAAG
1 TTATAAAATCAAATCTTCTAAG
44463560 GTTACAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (23 bp):
TTATAAAATCAAATCTTCTAAGA
Found at i:44466607 original size:72 final size:72
Alignment explanation
Indices: 44466490--44466650 Score: 218
Period size: 72 Copynumber: 2.2 Consensus size: 72
44466480 TTAGTGATGT
* *
44466490 TTTTTAA-AAAGCG-CTGCAAAAAACCTAAGCCCAACGATGCTGTTTTCTAAGCTTTCAGGGATT
1 TTTTTAAGAAAGCGTC-GCAAAAAACCTAAGCCCAACAATGCCGTTTTCTAAGCTTTCAGGGATT
44466553 TAGCGGCG
65 TAGCGGCG
* * * * *
44466561 TTTTTGAGAAAGCGTCGCAAAAAACTTAAGCCCAACAATGCCGTTTTGTGAGCTTTCGGGGATTT
1 TTTTTAAGAAAGCGTCGCAAAAAACCTAAGCCCAACAATGCCGTTTTCTAAGCTTTCAGGGATTT
* *
44466626 AGTGGCA
66 AGCGGCG
44466633 TTTTTAAGAAAGCGTCGC
1 TTTTTAAGAAAGCGTCGC
44466651 TAATGCTCAG
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
71 6 0.08
72 71 0.91
73 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (72 bp):
TTTTTAAGAAAGCGTCGCAAAAAACCTAAGCCCAACAATGCCGTTTTCTAAGCTTTCAGGGATTT
AGCGGCG
Found at i:44466694 original size:113 final size:114
Alignment explanation
Indices: 44466544--44466760 Score: 328
Period size: 114 Copynumber: 1.9 Consensus size: 114
44466534 TTCTAAGCTT
* * * * *
44466544 TCAGGGATTTAGCGGCGTTTTTGAGAAAGCGTCGCAAAAAACTTAAGCC-CAACAATGCCGTTTT
1 TCAGGGATTTAGCGGCATTTTTGAGAAAGCGCCGCAAAAAACCTAAACCAAAACAATGCCGTTTT
*
44466608 GTGAGCTTTCGGGGATTTAGTGGCATTTTTAAGAAAGCGTCGCTAATGC
66 GTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGAAAGCGTCGCTAATGC
* *
44466657 TCAGGGCTTTAGCGGCATTTTTGAGAAAGCGCCGCAAAAAACCTAAACCAAAATAATGCCGTTTT
1 TCAGGGATTTAGCGGCATTTTTGAGAAAGCGCCGCAAAAAACCTAAACCAAAACAATGCCGTTTT
* * *
44466722 GTGAGCTTTCGGGGATTTTGCGGCGTTTTTAAGGAAGCG
66 GTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGAAAGCG
44466761 CCGCAAAAAA
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
113 44 0.48
114 48 0.52
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (114 bp):
TCAGGGATTTAGCGGCATTTTTGAGAAAGCGCCGCAAAAAACCTAAACCAAAACAATGCCGTTTT
GTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGAAAGCGTCGCTAATGC
Found at i:44466791 original size:73 final size:73
Alignment explanation
Indices: 44466664--44466823 Score: 230
Period size: 73 Copynumber: 2.2 Consensus size: 73
44466654 TGCTCAGGGC
* * * *
44466664 TTTAGCGGCATTTTTGAGAAAGCGCCGCAAAAAACCTAAACCAAAATAATGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAACCAAAACAACGCCGTTTTGTGAGCT
*
44466729 TTCGGGGA
66 TTCGGAGA
* * * * *
44466737 TTTTGCGGCGTTTTTAAGGAAGCGCCGCAAAAAACTTAAGCCAAAACGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAACCAAAACAACGCCGTTTTGTGAGCT
44466802 TTCGGAGA
66 TTCGGAGA
44466810 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
44466824 ATTAAAAACG
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
73 76 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (73 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAACCAAAACAACGCCGTTTTGTGAGCT
TTCGGAGA
Found at i:44466854 original size:187 final size:187
Alignment explanation
Indices: 44466488--44467274 Score: 963
Period size: 187 Copynumber: 4.2 Consensus size: 187
44466478 CATTAGTGAT
* * * * * * * * *
44466488 GTTTTTTAAAAAGCGCTGCAAAAAACCTAAGCC-CAACGATGCTGTTTTCTAAGCTTTCAGGGAT
1 GTTTTTGAGAAAGCGCCGCAAAAAACCTAAACCAAAACAATGCCGTTTTGTGAGCTTTCAGGGAT
* * * * * *
44466552 TTAGCGGCGTTTTTGAGAAAGCGTCGCAAAAAACTTAAGCC-CAACAATGCCGTTTTGTGAGCTT
66 TTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCTT
* * * *
44466616 TCGGGGATTTAGTGGCATTTTTAAGAAAGCGTCGCTAATGCTCAGGGCTTTAGCGGC
131 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGC
* * *
44466673 ATTTTTGAGAAAGCGCCGCAAAAAACCTAAACCAAAATAATGCCGTTTTGTGAGCTTTCGGGGAT
1 GTTTTTGAGAAAGCGCCGCAAAAAACCTAAACCAAAACAATGCCGTTTTGTGAGCTTTCAGGGAT
* * *
44466738 TTTGCGGCGTTTTTAAGGAAGCGCCGCAAAAAACTTAAGCCAAAACGACGCCGTTTTGTGAGCTT
66 TTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCTT
*
44466803 TCGGAGATTTAGCGGCGTTTTATTAA-AAA-CGCCGCTAATGCTCAAGGCTTTAGCGGC
131 TCGGGGATTTAGCGGCG-TTT-TTAAGAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGC
* * * *
44466860 TTTTTTGAGAAAGCGCTGCAAAAAACCT-AAGCAAAAAAGATGCCGTTTTGTGAGCTTTCAGGGA
1 GTTTTTGAGAAAGCGCCGCAAAAAACCTAAACCAAAACA-ATGCCGTTTTGTGAGCTTTCAGGGA
* * * * * *
44466924 TTTAGCGGCGTTGTTGAGAAAGCGCCACAAAAAACCTAAGCCAAAAAGACGCTGTTTTGTGAGCC
65 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
* *
44466989 TTCGGGGATTTAGCGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAAGGATTTAGCGGC
130 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGC
* * * ** *
44467047 GTTTTTGAGAAAACGCCGCAAAAAACCTAAGCCAAAACAACGATGTTTTGTGAGCTTTCGGGGAT
1 GTTTTTGAGAAAGCGCCGCAAAAAACCTAAACCAAAACAATGCCGTTTTGTGAGCTTTCAGGGAT
* * * *
44467112 TTAGCGGCGTTTTTATGGAAGCGCCGCTAATACGCTGCAAAAAACCTAAGCCAAAACGATGCCAT
66 TTAGCGGCGTTTTTA-AGAA-AG-CG------C-C-GCAAAAAACCTAAGCCAAAACGACGCCGT
* *
44467177 TTTGTGAGCTTTCGGGGTTTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGC
120 TTTGTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAAGGCTTTAGC
44467242 GGC
185 GGC
44467245 GTTTTTGAGAAAGCGCCGCAAAAAACCTAA
1 GTTTTTGAGAAAGCGCCGCAAAAAACCTAA
44467275 GCGCTTTCGG
Statistics
Matches: 517, Mismatches: 66, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
185 32 0.06
186 74 0.14
187 270 0.52
188 16 0.03
189 5 0.01
190 2 0.00
196 1 0.00
197 1 0.00
198 116 0.22
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (187 bp):
GTTTTTGAGAAAGCGCCGCAAAAAACCTAAACCAAAACAATGCCGTTTTGTGAGCTTTCAGGGAT
TTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCTT
TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGC
Found at i:44466970 original size:73 final size:73
Alignment explanation
Indices: 44466851--44467022 Score: 245
Period size: 73 Copynumber: 2.4 Consensus size: 73
44466841 TGCTCAAGGC
* ** * *
44466851 TTTAGCGGCTTTTTTGAGAAAGCGCTGCAAAAAACCTAAGCAAAAAAGATGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCACAAAAAACCTAAGCAAAAAAGACGCCGTTTTGTGAGCC
44466916 TTCAGGGA
66 TTCAGGGA
* * *
44466924 TTTAGCGGCGTTGTTGAGAAAGCGCCACAAAAAACCTAAGCCAAAAAGACGCTGTTTTGTGAGCC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCACAAAAAACCTAAGCAAAAAAGACGCCGTTTTGTGAGCC
*
44466989 TTCGGGGA
66 TTCAGGGA
* *
44466997 TTTAGCGGCGTTTTTAAGTAAGCGCC
1 TTTAGCGGCGTTTTTGAGAAAGCGCC
44467023 GCTAATGCTC
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
73 87 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (73 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCACAAAAAACCTAAGCAAAAAAGACGCCGTTTTGTGAGCC
TTCAGGGA
Found at i:44467121 original size:114 final size:114
Alignment explanation
Indices: 44466921--44467142 Score: 365
Period size: 114 Copynumber: 1.9 Consensus size: 114
44466911 GAGCTTTCAG
* *
44466921 GGATTTAGCGGCGTTGTTGAGAAAGCGCCACAAAAAACCTAAGCCAAAAAGACGCTGTTTTGTGA
1 GGATTTAGCGGCGTTGTTGAGAAAACGCCACAAAAAACCTAAGCCAAAAAGACGATGTTTTGTGA
*
44466986 GCCTTCGGGGATTTAGCGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAA
66 GCCTTCGGGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAA
* *
44467035 GGATTTAGCGGCGTTTTTGAGAAAACGCCGCAAAAAACCTAAGCCAAAACA-ACGATGTTTTGTG
1 GGATTTAGCGGCGTTGTTGAGAAAACGCCACAAAAAACCTAAGCCAAAA-AGACGATGTTTTGTG
* *
44467099 AGCTTTCGGGGATTTAGCGGCGTTTTTATGGAAGCGCCGCTAAT
65 AGCCTTCGGGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAAT
44467143 ACGCTGCAAA
Statistics
Matches: 100, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
114 99 0.99
115 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (114 bp):
GGATTTAGCGGCGTTGTTGAGAAAACGCCACAAAAAACCTAAGCCAAAAAGACGATGTTTTGTGA
GCCTTCGGGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAA
Found at i:44467163 original size:84 final size:84
Alignment explanation
Indices: 44467059--44467226 Score: 255
Period size: 84 Copynumber: 2.0 Consensus size: 84
44467049 TTTTGAGAAA
**
44467059 ACGCCGCAAAAAACCTAAGCCAAAACAACGATGTTTTGTGAGCTTTCGGGGATTTAGCGGCGTTT
1 ACGCCGCAAAAAACCTAAGCCAAAACAACGACATTTTGTGAGCTTTCGGGGATTTAGCGGCGTTT
* *
44467124 TTATGGAAGCGCCGCTAAT
66 TTAAGAAAGCGCCGCTAAT
* * * * *
44467143 ACGCTGCAAAAAACCTAAGCCAAAACGATGCCATTTTGTGAGCTTTCGGGGTTTTAGCGGCGTTT
1 ACGCCGCAAAAAACCTAAGCCAAAACAACGACATTTTGTGAGCTTTCGGGGATTTAGCGGCGTTT
44467208 TTAAGAAAGCGCCGCTAAT
66 TTAAGAAAGCGCCGCTAAT
44467227 GCTCAGGGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 75 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (84 bp):
ACGCCGCAAAAAACCTAAGCCAAAACAACGACATTTTGTGAGCTTTCGGGGATTTAGCGGCGTTT
TTAAGAAAGCGCCGCTAAT
Found at i:44467610 original size:21 final size:21
Alignment explanation
Indices: 44467579--44467640 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
44467569 TGTTTATAGA
*
44467579 TTATGGGTTTAGGGGTTATGGT
1 TTAT-GGTTTAGAGGTTATGGT
* **
44467601 TTATGGTTTAAAGGTTGGGGT
1 TTATGGTTTAGAGGTTATGGT
*
44467622 TTAAGGTTTAGAGGTTATG
1 TTATGGTTTAGAGGTTATG
44467641 TGCATGTCAA
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
21 28 0.88
22 4 0.12
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (21 bp):
TTATGGTTTAGAGGTTATGGT
Found at i:44467677 original size:21 final size:20
Alignment explanation
Indices: 44467652--44467693 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 20
44467642 GCATGTCAAG
44467652 GGTTTATGGTTTTAGGGTTTA
1 GGTTTATGGTTTT-GGGTTTA
44467673 GGTTTATGGTTTTGGGTTTA
1 GGTTTATGGTTTTGGGTTTA
44467693 G
1 G
44467694 ATTAACTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.12, C:0.00, G:0.36, T:0.52
Consensus pattern (20 bp):
GGTTTATGGTTTTGGGTTTA
Found at i:44467982 original size:21 final size:20
Alignment explanation
Indices: 44467958--44468030 Score: 83
Period size: 21 Copynumber: 3.5 Consensus size: 20
44467948 TAGGGTTTAT
* *
44467958 GGTTTAAGGGTTGAGATTTAA
1 GGTTTAGGGGTT-AGAGTTAA
44467979 GGTTTAGGGGTTAGTAGTTAA
1 GGTTTAGGGGTTAG-AGTTAA
*
44468000 GGGTTAGGGGTTAAGAGTTAA
1 GGTTTAGGGGTT-AGAGTTAA
44468021 GGATTTAGGG
1 GG-TTTAGGG
44468031 ATTTAAGGGT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
20 2 0.04
21 35 0.78
22 8 0.18
ACGTcount: A:0.26, C:0.00, G:0.40, T:0.34
Consensus pattern (20 bp):
GGTTTAGGGGTTAGAGTTAA
Found at i:44472011 original size:43 final size:43
Alignment explanation
Indices: 44471947--44472193 Score: 119
Period size: 43 Copynumber: 5.8 Consensus size: 43
44471937 TCATTCTTTA
* * * *
44471947 TAGCGGCGTTT-TCGGTAGAAGCGTTGGTAAAGGTCATGACCTT
1 TAGCGGCGTTTGT-GGTAGAAGCGTCGCTAAAGGCCACGACCTT
*
44471990 TAGCGGCGTTTGTGG-ATGAAGCGTCGCTAAAGGCCACGATCTT
1 TAGCGGCGTTTGTGGTA-GAAGCGTCGCTAAAGGCCACGACCTT
* * * * * * **
44472033 TAGCTGCATTTGTGGGAGAGGCG-CTACTAAAGGCCATGATGTT
1 TAGCGGCGTTTGTGGTAGAAGCGTC-GCTAAAGGCCACGACCTT
* * * * * * *
44472076 TAGCGGTGTTTGT-GTAAAAGCGCCGCTAGAGGTCC-TGATCTA
1 TAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGG-CCACGACCTT
* * * * * * * *
44472118 TAGCGACGTTTATGGAAAAAGCGCCGCTAAAGG-TACTGATCTA
1 TAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGGCCAC-GACCTT
* * * *
44472161 TAGCGGTGTTTGTGGGAGATGCGCCGCTAAAGG
1 TAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGG
44472194 TCATGATCTA
Statistics
Matches: 161, Mismatches: 34, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
42 29 0.18
43 130 0.81
44 2 0.01
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGGCCACGACCTT
Found at i:44472194 original size:43 final size:44
Alignment explanation
Indices: 44471974--44472206 Score: 176
Period size: 43 Copynumber: 5.5 Consensus size: 44
44471964 GAAGCGTTGG
* * * * *
44471974 TAAAGGT-CATGACCTTTAGCGGCGTTTGT-GGATGAAGCGTCGC
1 TAAAGGTCCATGATCTATAGCGGTGTTTGTGGGA-AAAGCGCCGC
* * * ** * * **
44472017 TAAAGG-CCACGATCTTTAGCTGCATTTGTGGGAGAGGCGCTAC
1 TAAAGGTCCATGATCTATAGCGGTGTTTGTGGGAAAAGCGCCGC
* * *
44472060 TAAAGG-CCATGATGTTTAGCGGTGTTTGT-GTAAAAGCGCCGC
1 TAAAGGTCCATGATCTATAGCGGTGTTTGTGGGAAAAGCGCCGC
* ** * *
44472102 TAGAGGTCC-TGATCTATAGCGACGTTTATGGAAAAAGCGCCGC
1 TAAAGGTCCATGATCTATAGCGGTGTTTGTGGGAAAAGCGCCGC
* * *
44472145 TAAAGGTAC-TGATCTATAGCGGTGTTTGTGGGAGATGCGCCGC
1 TAAAGGTCCATGATCTATAGCGGTGTTTGTGGGAAAAGCGCCGC
44472188 TAAAGGT-CATGATCTATAG
1 TAAAGGTCCATGATCTATAG
44472207 TGGCGTTTAT
Statistics
Matches: 152, Mismatches: 33, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
42 29 0.19
43 120 0.79
44 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.27
Consensus pattern (44 bp):
TAAAGGTCCATGATCTATAGCGGTGTTTGTGGGAAAAGCGCCGC
Found at i:44480155 original size:16 final size:15
Alignment explanation
Indices: 44480125--44480172 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
44480115 ACCTGAAAAG
*
44480125 AAAATAAAGAAATAA
1 AAAATAAATAAATAA
44480140 AAAATAAATTAAATAA
1 AAAATAAA-TAAATAA
44480156 GAATAA-AAATAAATAA
1 -AA-AATAAATAAATAA
44480172 A
1 A
44480173 CCAAATTGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
15 9 0.31
16 13 0.45
17 5 0.17
18 2 0.07
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (15 bp):
AAAATAAATAAATAA
Found at i:44483041 original size:41 final size:41
Alignment explanation
Indices: 44482996--44483092 Score: 140
Period size: 41 Copynumber: 2.4 Consensus size: 41
44482986 CAGAACACTA
* *** *
44482996 GCATTAAGTCTGCTAGACATAAAGTTTGAAATATTTCGCCG
1 GCATTAAGCCTGCTAGACATAAAGTCCAAAATATTTCACCG
*
44483037 GCATTAAGCCTGCTAGACGTAAAGTCCAAAATATTTCACCG
1 GCATTAAGCCTGCTAGACATAAAGTCCAAAATATTTCACCG
44483078 GCATTAAGCCTGCTA
1 GCATTAAGCCTGCTA
44483093 AGCATAGAGC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.28
Consensus pattern (41 bp):
GCATTAAGCCTGCTAGACATAAAGTCCAAAATATTTCACCG
Found at i:44483487 original size:65 final size:61
Alignment explanation
Indices: 44483304--44483490 Score: 148
Period size: 65 Copynumber: 3.0 Consensus size: 61
44483294 ACATGTATAA
* * * *
44483304 TTATATAT-AA-TTACTAACATTAAGTTCAGCTCAAAGAAACTTGTAGCT-TACATTCGAACCTC
1 TTATATATAAATTTA-TAACATTAAGTTAAACTCAAAG-AA-TTGTA-TTATACATTCGAACCAC
* * * * * **
44483366 TTATATATATATTTCATAACATTACA-TTGAATTCAAAGACATTGCATCATTTATTCGAACCAC
1 TTATATATAAATTT-ATAACATTA-AGTTAAACTCAAAGA-ATTGTATTATACATTCGAACCAC
44483429 ATATATATATACAATTTATAACATTAAGTTAAACTCAAAGAATTTGTATTATACATTCGAAC
1 -T-TATATATA-AATTTATAACATTAAGTTAAACTCAAAGAA-TTGTATTATACATTCGAAC
44483491 ATAATCATAT
Statistics
Matches: 97, Mismatches: 17, Indels: 19
0.73 0.13 0.14
Matches are distributed among these distances:
62 8 0.08
63 17 0.18
64 23 0.24
65 45 0.46
66 4 0.04
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.36
Consensus pattern (61 bp):
TTATATATAAATTTATAACATTAAGTTAAACTCAAAGAATTGTATTATACATTCGAACCAC
Found at i:44491490 original size:41 final size:41
Alignment explanation
Indices: 44491445--44491541 Score: 140
Period size: 41 Copynumber: 2.4 Consensus size: 41
44491435 AGAACACTAG
* **
44491445 CATTAAGTCTGCTAGACATAAAGTCTGAAATATTTCACCGA
1 CATTAAGCCTGCTAGACATAAAGTCCAAAATATTTCACCGA
* * *
44491486 CATTAAGCCTGCTAGACGTAAAGTCCAAAATATTTTACCGG
1 CATTAAGCCTGCTAGACATAAAGTCCAAAATATTTCACCGA
44491527 CATTAAGCCTGCTAG
1 CATTAAGCCTGCTAG
44491542 GCACAGAGCC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (41 bp):
CATTAAGCCTGCTAGACATAAAGTCCAAAATATTTCACCGA
Found at i:44498727 original size:15 final size:15
Alignment explanation
Indices: 44498707--44498737 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
44498697 GCTCTATAAA
*
44498707 TATTACAGAACTATT
1 TATTACAGAACAATT
44498722 TATTACAGAACAATT
1 TATTACAGAACAATT
44498737 T
1 T
44498738 CTCTCAATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (15 bp):
TATTACAGAACAATT
Found at i:44498809 original size:27 final size:27
Alignment explanation
Indices: 44498746--44498809 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
44498736 TTCTCTCAAT
* * *
44498746 GTTCGTCATATGCACTATTTCTTTAGA
1 GTTCGTCATATGCACCATTCCTTCAGA
* *
44498773 GTTCGCCATATGTACCATTCCTTCAGA
1 GTTCGTCATATGCACCATTCCTTCAGA
*
44498800 GTTCATCATA
1 GTTCGTCATA
44498810 CCATTTAGTC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (27 bp):
GTTCGTCATATGCACCATTCCTTCAGA
Found at i:44499042 original size:26 final size:26
Alignment explanation
Indices: 44498976--44499086 Score: 91
Period size: 26 Copynumber: 4.2 Consensus size: 26
44498966 TAGATCACCG
* *
44498976 CAAAGGCTTCCATTTCA-TTAATTGCCA
1 CAAAGGCTTTCATTTCAGAT-A-TGCCA
* *
44499003 CAAAGCCTTACATTTCAGATATGCCA
1 CAAAGGCTTTCATTTCAGATATGCCA
**
44499029 CAAAGGCTTTCATTTCAGATACACCA
1 CAAAGGCTTTCATTTCAGATATGCCA
* **
44499055 CAAAGGGTTTTGTTTCATAGAT-TGCCA
1 CAAAGGCTTTCATTTC--AGATATGCCA
44499082 CAAAG
1 CAAAG
44499087 ACTTCTATTT
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
26 40 0.58
27 24 0.35
28 5 0.07
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.30
Consensus pattern (26 bp):
CAAAGGCTTTCATTTCAGATATGCCA
Found at i:44499081 original size:53 final size:53
Alignment explanation
Indices: 44498976--44499218 Score: 206
Period size: 53 Copynumber: 4.6 Consensus size: 53
44498966 TAGATCACCG
** * **
44498976 CAAAGGCTTCCATTTCATTAAT-TGCCACAAAGCCTTACATTTC--AGATATGCCA
1 CAAAGGCTTCCATTTCA--AATACACCACAAAGGCTTATGTTTCATAGAT-TGCCA
* * * *
44499029 CAAAGGCTTTCATTTCAGATACACCACAAAGGGTTTTGTTTCATAGATTGCCA
1 CAAAGGCTTCCATTTCAAATACACCACAAAGGCTTATGTTTCATAGATTGCCA
* * * * *
44499082 CAAAGACTTCTATTTCAAATACGCCATGAAA-GCTTATGTTTCATAGATTGTCA
1 CAAAGGCTTCCATTTCAAATACACCA-CAAAGGCTTATGTTTCATAGATTGCCA
* * * * ** * *
44499135 TAAAGGCTTCCATTTTAAATTCGCCACAAAGGCTTCCGTTTCATAGATTTCTA
1 CAAAGGCTTCCATTTCAAATACACCACAAAGGCTTATGTTTCATAGATTGCCA
* *
44499188 CAAAGGCTTCCATTTCTAATACACTACAAAG
1 CAAAGGCTTCCATTTCAAATACACCACAAAG
44499219 ACTTCCATCT
Statistics
Matches: 150, Mismatches: 35, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
51 2 0.01
52 17 0.11
53 124 0.83
54 7 0.05
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (53 bp):
CAAAGGCTTCCATTTCAAATACACCACAAAGGCTTATGTTTCATAGATTGCCA
Found at i:44504879 original size:27 final size:27
Alignment explanation
Indices: 44504846--44504900 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
44504836 TTCTCAAAGA
*
44504846 TAGATCTCAGATCCGGGCATTATCAAT
1 TAGATCTCAAATCCGGGCATTATCAAT
* *
44504873 TAGATCTCAAATCTGGGTATTATCAAT
1 TAGATCTCAAATCCGGGCATTATCAAT
44504900 T
1 T
44504901 GAAAGTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (27 bp):
TAGATCTCAAATCCGGGCATTATCAAT
Found at i:44514669 original size:21 final size:21
Alignment explanation
Indices: 44514643--44514683 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
44514633 TAGTTGTTAT
44514643 ACATCTATAACAACATTTGAA
1 ACATCTATAACAACATTTGAA
44514664 ACATCTATAACAACATTTGA
1 ACATCTATAACAACATTTGA
44514684 TATTTAGATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.46, C:0.20, G:0.05, T:0.29
Consensus pattern (21 bp):
ACATCTATAACAACATTTGAA
Found at i:44519102 original size:24 final size:22
Alignment explanation
Indices: 44519042--44519103 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 22
44519032 TCCCCTTTAC
44519042 TAAAAAAA-ATTAAAAAAATTG
1 TAAAAAAATATTAAAAAAATTG
* * *
44519063 TAAAAAAATAGCTAAAGGAAATTT
1 TAAAAAAATA-TTAAA-AAAATTG
44519087 TAAAAAAATATATAAAA
1 TAAAAAAATAT-TAAAA
44519104 TGAGTGACCA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 8 0.25
22 1 0.03
23 4 0.12
24 19 0.59
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.24
Consensus pattern (22 bp):
TAAAAAAATATTAAAAAAATTG
Found at i:44522149 original size:42 final size:43
Alignment explanation
Indices: 44522016--44522157 Score: 187
Period size: 43 Copynumber: 3.3 Consensus size: 43
44522006 TCCCAGATGT
* *
44522016 GGTCTTACATGTAATCAAATAACGATGCCACTGTCCCAGACAG
1 GGTCTTACACGTAATTAAATAACGATGCCACTGTCCCAGACAG
* * *
44522059 GGTCTTACACGTAATTAAATAATGATGCTACTGTCCTAGACAG
1 GGTCTTACACGTAATTAAATAACGATGCCACTGTCCCAGACAG
* * * **
44522102 GGTCTTACACGTAATTATAT-ACGACGCCAATGTCCCAGACTT
1 GGTCTTACACGTAATTAAATAACGATGCCACTGTCCCAGACAG
44522144 GGTCTTACACGTAA
1 GGTCTTACACGTAA
44522158 ATTTCAAATC
Statistics
Matches: 86, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 29 0.34
43 57 0.66
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGTAATTAAATAACGATGCCACTGTCCCAGACAG
Found at i:44523748 original size:30 final size:30
Alignment explanation
Indices: 44523690--44523748 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
44523680 TGTTTTCTTT
**
44523690 TGATAAGAAAAAAAAACAGCTTTCTATAAA
1 TGATAAGAAAAAAAAACAGCTTGATATAAA
* *
44523720 TGATAAGAAAAAAAATCAGGTTGATATAA
1 TGATAAGAAAAAAAAACAGCTTGATATAA
44523749 CAATAAACTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.56, C:0.07, G:0.14, T:0.24
Consensus pattern (30 bp):
TGATAAGAAAAAAAAACAGCTTGATATAAA
Done.