Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 152 of 230
Found at i:44796584 original size:19 final size:22
Alignment explanation
Indices: 44796542--44796589 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 22
44796532 GATGATTACA
44796542 TATATATATATATGTTAACTTAT
1 TATATATATATATGTTAAC-TAT
44796565 TATATAT-TATATGTT-A-TAT
1 TATATATATATATGTTAACTAT
44796584 TATATA
1 TATATA
44796590 ATAAGAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.36
21 1 0.04
22 8 0.32
23 7 0.28
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
TATATATATATATGTTAACTAT
Found at i:44801785 original size:16 final size:17
Alignment explanation
Indices: 44801764--44801805 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
44801754 CTCTTGTCCT
*
44801764 TATCCCTATCCACTT-C
1 TATCCCTATCCAATTAC
*
44801780 TATCCCAATCCAATTAC
1 TATCCCTATCCAATTAC
*
44801797 CATCCCTAT
1 TATCCCTAT
44801806 AGTCTTCCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.26, C:0.40, G:0.00, T:0.33
Consensus pattern (17 bp):
TATCCCTATCCAATTAC
Found at i:44803686 original size:17 final size:18
Alignment explanation
Indices: 44803655--44803688 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
44803645 TAATTTAATT
44803655 TAATTAAATTATTTAAAA
1 TAATTAAATTATTTAAAA
*
44803673 TAATT-AATTTTTTAAA
1 TAATTAAATTATTTAAA
44803689 TTATAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTAAATTATTTAAAA
Found at i:44803928 original size:21 final size:21
Alignment explanation
Indices: 44803902--44803985 Score: 109
Period size: 21 Copynumber: 4.1 Consensus size: 21
44803892 CCTTAAACCC
44803902 TAAGGTTTAGGGTTTGAGATT
1 TAAGGTTTAGGGTTTGAGATT
44803923 TAAGGTTTAGGGTTTGAGATT
1 TAAGGTTTAGGGTTTGAGATT
* *
44803944 TTAGGTTTAAGGTTTGAG-TT
1 TAAGGTTTAGGGTTTGAGATT
** *
44803964 T-AGGTTCGGGGTTTGAGGTT
1 TAAGGTTTAGGGTTTGAGATT
44803984 TA
1 TA
44803986 GGCTTTAAGT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
19 13 0.23
20 6 0.11
21 37 0.66
ACGTcount: A:0.20, C:0.01, G:0.35, T:0.44
Consensus pattern (21 bp):
TAAGGTTTAGGGTTTGAGATT
Found at i:44803929 original size:14 final size:14
Alignment explanation
Indices: 44803904--44803994 Score: 64
Period size: 14 Copynumber: 6.6 Consensus size: 14
44803894 TTAAACCCTA
*
44803904 AGGTTTAGGGTTTG
1 AGGTTTAAGGTTTG
*
44803918 AGATTTAAGGTTT-
1 AGGTTTAAGGTTTG
* * *
44803931 AGGGTTTGAGATTTT
1 A-GGTTTAAGGTTTG
44803946 AGGTTTAAGGTTTG
1 AGGTTTAAGGTTTG
*
44803960 A-GTTT-AGGTTCG
1 AGGTTTAAGGTTTG
* *
44803972 GGGTTTGAGGTTT-
1 AGGTTTAAGGTTTG
44803985 AGGCTTTAAG
1 AGG-TTTAAG
44803995 TTTAAGATTT
Statistics
Matches: 59, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
12 6 0.10
13 11 0.19
14 41 0.69
15 1 0.02
ACGTcount: A:0.20, C:0.02, G:0.35, T:0.43
Consensus pattern (14 bp):
AGGTTTAAGGTTTG
Found at i:44803983 original size:7 final size:7
Alignment explanation
Indices: 44803912--44803984 Score: 53
Period size: 7 Copynumber: 10.7 Consensus size: 7
44803902 TAAGGTTTAG
44803912 GGTTTGA
1 GGTTTGA
* *
44803919 GATTTAA
1 GGTTTGA
44803926 GGTTT-A
1 GGTTTGA
44803932 GGGTTTGA
1 -GGTTTGA
* *
44803940 GATTTTA
1 GGTTTGA
*
44803947 GGTTTAA
1 GGTTTGA
44803954 GGTTTGA
1 GGTTTGA
44803961 -GTTT-A
1 GGTTTGA
* *
44803966 GGTTCGG
1 GGTTTGA
44803973 GGTTTGA
1 GGTTTGA
44803980 GGTTT
1 GGTTT
44803985 AGGCTTTAAG
Statistics
Matches: 50, Mismatches: 12, Indels: 8
0.71 0.17 0.11
Matches are distributed among these distances:
5 1 0.02
6 8 0.16
7 40 0.80
8 1 0.02
ACGTcount: A:0.18, C:0.01, G:0.36, T:0.45
Consensus pattern (7 bp):
GGTTTGA
Found at i:44804566 original size:22 final size:22
Alignment explanation
Indices: 44804471--44804582 Score: 57
Period size: 22 Copynumber: 4.9 Consensus size: 22
44804461 TTTTTGTTAA
*
44804471 AATTT-AATATAATAAATAAATTAT
1 AATTTAAATAAAAT-AATAAA--AT
* **
44804495 AATTTAAATATAAATAAGGATTAT
1 AATTTAAATA-AAATAA-TAAAAT
* * **
44804519 TATTTAAATATAA-AATAATTT
1 AATTTAAATAAAATAATAAAAT
44804540 AAATTTAAATAAAATAATAAAAT
1 -AATTTAAATAAAATAATAAAAT
* *
44804563 AATTTAGATAACAAAAATAA
1 AATTTAAATAA-AATAATAA
44804583 CTTTTGTTAA
Statistics
Matches: 67, Mismatches: 15, Indels: 13
0.71 0.16 0.14
Matches are distributed among these distances:
21 3 0.04
22 23 0.34
23 15 0.22
24 16 0.24
25 6 0.09
26 4 0.06
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.37
Consensus pattern (22 bp):
AATTTAAATAAAATAATAAAAT
Found at i:44807886 original size:72 final size:72
Alignment explanation
Indices: 44807806--44807949 Score: 252
Period size: 72 Copynumber: 2.0 Consensus size: 72
44807796 CCGGTTAAGT
* *
44807806 ATATAGAAATATCAAATAAATTTGAGTTGACATATTTAATAATGTATGGTGTGCCTCATATTTTC
1 ATATAGAAATACCAAATAAATTTGAGTTGACATATTTAATAATGTAGGGTGTGCCTCATATTTTC
*
44807871 AGTTGAA
66 AGCTGAA
*
44807878 ATATAGAAATACCAAATAAATTTGAGTTGACATATTTAATAATGTGGGGTGTGCCTCATATTTTC
1 ATATAGAAATACCAAATAAATTTGAGTTGACATATTTAATAATGTAGGGTGTGCCTCATATTTTC
44807943 AGCTGAA
66 AGCTGAA
44807950 TAGACAACGA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (72 bp):
ATATAGAAATACCAAATAAATTTGAGTTGACATATTTAATAATGTAGGGTGTGCCTCATATTTTC
AGCTGAA
Found at i:44812322 original size:27 final size:27
Alignment explanation
Indices: 44812292--44812469 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
44812282 ATATTGAGCC
* *
44812292 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
44812319 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
44812346 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
* ** ** *
44812374 CGCACTCTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
44812401 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
44812428 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
44812455 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
44812470 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 101 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:44812431 original size:82 final size:81
Alignment explanation
Indices: 44812313--44812468 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
44812303 TGCTATATAA
* * *
44812313 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
*
44812378 CTCTTAGTGCCGCATGG
65 CCCTTAGTGCCGCATGG
* * **
44812395 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
44812459 CCCTTAGTGC
65 CCCTTAGTGC
44812469 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.74
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
CCTTAGTGCCGCATGG
Found at i:44814269 original size:28 final size:28
Alignment explanation
Indices: 44814229--44814286 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
44814219 TTGTCTTCAC
44814229 ATCCATTTGATGTACCAACAAATTGTGA
1 ATCCATTTGATGTACCAACAAATTGTGA
* *
44814257 ATCCATTTGATGTACTAGCAAATTGTGA
1 ATCCATTTGATGTACCAACAAATTGTGA
44814285 AT
1 AT
44814287 GAAATCTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (28 bp):
ATCCATTTGATGTACCAACAAATTGTGA
Found at i:44817361 original size:72 final size:72
Alignment explanation
Indices: 44817281--44817424 Score: 252
Period size: 72 Copynumber: 2.0 Consensus size: 72
44817271 CCGGTTAAGT
* *
44817281 ATATAGAAATATCAAATAAATTTGAGTTGACATATTTAATAATGTATGGTGTGCCTCATATTTTC
1 ATATAGAAATACCAAATAAATTTGAGTTGACATATTTAATAATGTAGGGTGTGCCTCATATTTTC
*
44817346 AGTTGAA
66 AGCTGAA
*
44817353 ATATAGAAATACCAAATAAATTTGAGTTGACATATTTAATAATGTGGGGTGTGCCTCATATTTTC
1 ATATAGAAATACCAAATAAATTTGAGTTGACATATTTAATAATGTAGGGTGTGCCTCATATTTTC
44817418 AGCTGAA
66 AGCTGAA
44817425 TAGACAACGA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (72 bp):
ATATAGAAATACCAAATAAATTTGAGTTGACATATTTAATAATGTAGGGTGTGCCTCATATTTTC
AGCTGAA
Found at i:44821803 original size:27 final size:27
Alignment explanation
Indices: 44821773--44821950 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
44821763 ATATTGAGCC
* *
44821773 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
44821800 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
44821827 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
* ** ** *
44821855 CGCACTCTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
44821882 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
44821909 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
44821936 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
44821951 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 101 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:44821912 original size:82 final size:81
Alignment explanation
Indices: 44821794--44821949 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
44821784 TGCTATATAA
* * *
44821794 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
*
44821859 CTCTTAGTGCCGCATGG
65 CCCTTAGTGCCGCATGG
* * **
44821876 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
44821940 CCCTTAGTGC
65 CCCTTAGTGC
44821950 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.74
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
CCTTAGTGCCGCATGG
Found at i:44823750 original size:28 final size:28
Alignment explanation
Indices: 44823710--44823767 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
44823700 TTGTCTTCAC
44823710 ATCCATTTGATGTACCAACAAATTGTGA
1 ATCCATTTGATGTACCAACAAATTGTGA
* *
44823738 ATCCATTTGATGTACTAGCAAATTGTGA
1 ATCCATTTGATGTACCAACAAATTGTGA
44823766 AT
1 AT
44823768 GAAATCTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (28 bp):
ATCCATTTGATGTACCAACAAATTGTGA
Found at i:44827031 original size:22 final size:22
Alignment explanation
Indices: 44826983--44827024 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
44826973 GTAGTAATAG
* * *
44826983 AAGGGTAAAATAGTAAATATGC
1 AAGGGCAAAAGAGTAAAAATGC
44827005 AAGGGCAAAAGAGTAAAAAT
1 AAGGGCAAAAGAGTAAAAAT
44827025 CATAGGGTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.05, G:0.24, T:0.17
Consensus pattern (22 bp):
AAGGGCAAAAGAGTAAAAATGC
Found at i:44828411 original size:26 final size:27
Alignment explanation
Indices: 44828361--44828430 Score: 108
Period size: 26 Copynumber: 2.6 Consensus size: 27
44828351 AAAAATAAAA
44828361 ATTTACCAAAATAT-TATAACTTTTTTT
1 ATTTACCAAAATATATATAAC-TTTTTT
44828388 ATTTACCAAAATATATATAA-TTTTTT
1 ATTTACCAAAATATATATAACTTTTTT
*
44828414 ATTTACGAAAATATATA
1 ATTTACCAAAATATATA
44828431 AAAAAACCTG
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 22 0.54
27 14 0.34
28 5 0.12
ACGTcount: A:0.43, C:0.09, G:0.01, T:0.47
Consensus pattern (27 bp):
ATTTACCAAAATATATATAACTTTTTT
Found at i:44828517 original size:27 final size:26
Alignment explanation
Indices: 44828486--44828552 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 26
44828476 CACGCAAATG
44828486 GCATTGGCGGCACCAATGGTGCCAAT
1 GCATTGGCGGCACCAATGGTGCCAAT
44828512 GCCATTGGCGGCACCAATGGTGCCATATT
1 G-CATTGGCGGCACCAATGGTGCCA-A-T
44828541 G-ATTGGCGGCAC
1 GCATTGGCGGCAC
44828553 TATTCGTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
26 1 0.03
27 34 0.89
28 1 0.03
29 2 0.05
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (26 bp):
GCATTGGCGGCACCAATGGTGCCAAT
Found at i:44831141 original size:4 final size:4
Alignment explanation
Indices: 44831125--44831267 Score: 102
Period size: 4 Copynumber: 35.0 Consensus size: 4
44831115 CTCCTCTCCT
*
44831125 TTTC TTTC CTTC TTTC TTTC TTT- TTTC TTTTC TTTTCC TTT- TCTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTTC -TTT-C TTTC T-TTC
* *
44831171 -TTC -TTC TTTC TTTC TTTT TTTC TCTTC TCTTC -TCC TTTCC TTTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC T-TTC T-TTC TTTC TTT-C -TTTC
* *
44831216 TTTC TTTC CTTC -TT- TTTC TTTC TTTCC TCTCC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTT-C T-TTC TTTC TTTC TTTC TTTC
44831264 TTTC
1 TTTC
44831268 CCTCCCCTTC
Statistics
Matches: 116, Mismatches: 9, Indels: 28
0.76 0.06 0.18
Matches are distributed among these distances:
3 16 0.14
4 70 0.60
5 25 0.22
6 5 0.04
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTC
Found at i:44831183 original size:18 final size:18
Alignment explanation
Indices: 44831093--44831258 Score: 89
Period size: 18 Copynumber: 9.0 Consensus size: 18
44831083 CTTCATTCCC
44831093 TCTTCTTCTT-TTT-TTT
1 TCTTCTTCTTCTTTCTTT
* *
44831109 TC-TCTTCTCCTCTCCTTT
1 TCTTCTTCTTCT-TTCTTT
44831127 TCTTTCCTTCTTTCTTTCTTT
1 TC-TT-CTTC-TTCTTTCTTT
44831148 T-TTCTT-TTCTTTTCCTTT
1 TCTTCTTCTTC-TTT-CTTT
44831166 TCTTCTTCTTCTTTC-TT
1 TCTTCTTCTTCTTTCTTT
*
44831183 TCTT-TTTTTCTCTTCTCTT
1 TCTTCTTCTTCT-TTCT-TT
44831202 CTCCTTTCCTT-TTCTTTCTTT
1 -T-C-TT-CTTCTTCTTTCTTT
* *
44831223 CCTTCTTTTTCTTTC-TT
1 TCTTCTTCTTCTTTCTTT
* *
44831240 TCCTCTCCTTTCTTTCTTT
1 TCTTCTTC-TTCTTTCTTT
44831259 CTTTCTTTCC
Statistics
Matches: 118, Mismatches: 10, Indels: 41
0.70 0.06 0.24
Matches are distributed among these distances:
15 6 0.05
16 12 0.10
17 22 0.19
18 30 0.25
19 15 0.13
20 5 0.04
21 13 0.11
22 9 0.08
23 4 0.03
24 2 0.02
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (18 bp):
TCTTCTTCTTCTTTCTTT
Found at i:44831199 original size:82 final size:79
Alignment explanation
Indices: 44831103--44831266 Score: 215
Period size: 82 Copynumber: 2.0 Consensus size: 79
44831093 TCTTCTTCTT
* * * *
44831103 TTTTTTTCTCTTCTCCTCTCCTTTTC-TTTCCTTCTTTCTTTCTTTTTTCTTTTCTTTTCCTTTT
1 TTTTTTTCTCTTCTCCTCTCCTTTCCTTTTCCTTCTTTCCTTC-TTTTTC-TTTC-TTTCCTCTC
44831167 C-TTCTTCTTCTTTCTTTC
63 CTTTC-T-TTCTTTCTTTC
* *
44831185 TTTTTTTCTCTTCTCTTCTCCTTTCCTTTTCTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTT
1 TTTTTTTCTCTTCTCCTCTCCTTTCCTTTTCCTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTT
44831250 TCTTTCTTTCTTTC
66 TCTTTCTTTCTTTC
44831264 TTT
1 TTT
44831267 CCCTCCCCTT
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
79 14 0.19
80 9 0.12
81 7 0.09
82 30 0.41
83 14 0.19
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (79 bp):
TTTTTTTCTCTTCTCCTCTCCTTTCCTTTTCCTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTT
TCTTTCTTTCTTTC
Found at i:44831210 original size:48 final size:51
Alignment explanation
Indices: 44831126--44831268 Score: 146
Period size: 48 Copynumber: 3.0 Consensus size: 51
44831116 TCCTCTCCTT
* * * * *
44831126 TTCTTTCCTTCTTTCTTTCTTTTTTCTTTTCTTTTCCTTTTC-TTC-TT-C
1 TTCTTTCTTTCTTTCTTTCTCTTCTCTTCTCCTTTCCTTTTCTTTCTTTCC
*
44831174 TTCTTTCTTTCTTTTTTTCTCTTCTCTTCTCCTTTCCTTTTCTTTCTTTCC
1 TTCTTTCTTTCTTTCTTTCTCTTCTCTTCTCCTTTCCTTTTCTTTCTTTCC
44831225 TTC-TT-TTTCTTTCTTTC-C-TCTCCTT-T-CTTT-C-TTTCTTTCTTTCC
1 TTCTTTCTTTCTTTCTTTCTCTTCT-CTTCTCCTTTCCTTTTCTTTCTTTCC
44831269 CTCCCCTTCT
Statistics
Matches: 84, Mismatches: 7, Indels: 12
0.82 0.07 0.12
Matches are distributed among these distances:
44 13 0.15
45 1 0.01
46 4 0.05
47 4 0.05
48 40 0.48
49 14 0.17
50 4 0.05
51 4 0.05
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (51 bp):
TTCTTTCTTTCTTTCTTTCTCTTCTCTTCTCCTTTCCTTTTCTTTCTTTCC
Found at i:44831259 original size:18 final size:17
Alignment explanation
Indices: 44831125--44831259 Score: 94
Period size: 18 Copynumber: 7.5 Consensus size: 17
44831115 CTCCTCTCCT
44831125 TTTCTTTCCTT-CTTTC
1 TTTCTTTCCTTCCTTTC
* *
44831141 TTTCTTT-TTTCTTTTC
1 TTTCTTTCCTTCCTTTC
* *
44831157 TTTTCCTTTTCTTCTTCTTC
1 -TTT-CTTTCCTTCCT-TTC
* **
44831177 TTTCTTTCTTTTTTTCTC
1 TTTCTTTCCTTCCTT-TC
44831195 TTCTCTTCTCCTTTCCTTTTC
1 TT-TCTT-TCC-TTCC-TTTC
*
44831216 TTTCTTTCCTTCTTTTTC
1 TTTCTTTCCTTC-CTTTC
44831234 TTTCTTTCCTCTCCTTTC
1 TTTCTTTCCT-TCCTTTC
44831252 TTTCTTTC
1 TTTCTTTC
44831260 TTTCTTTCCC
Statistics
Matches: 96, Mismatches: 11, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
15 2 0.02
16 11 0.11
17 4 0.04
18 45 0.47
19 17 0.18
20 9 0.09
21 6 0.06
22 2 0.02
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTCTTTCCTTCCTTTC
Found at i:44831265 original size:87 final size:87
Alignment explanation
Indices: 44831095--44831267 Score: 223
Period size: 87 Copynumber: 2.0 Consensus size: 87
44831085 TCATTCCCTC
* * * * *
44831095 TTCTTCTTTTTTTTTCTCTTCTCCTCTCCTTTTCTTTCCTTCTTTCTTTCTTTTTTCTTTTCTTT
1 TTCTTCTTTTTTCTTCTCTTCTCCTCTCCTTTTCTTTCCTTCCTTCTTTCTTCTTTCTTTTCCTC
44831160 TCCTTTTCTTCTTCTTCTTTCT
66 TCCTTTTCTTCTTCTTCTTTCT
* *
44831182 TTCTT-TTTTTCTCTTCTCTTCTCCTTTCCTTTTCTTTCTTTCCTTCTTT-TTCTTTC-TTTCCT
1 TTCTTCTTTTT-TCTTCTCTTCTCCTCTCCTTTTCTTTCCTTCCTTCTTTCTTCTTTCTTTTCCT
44831244 CTCC-TTTC-T-TTCTTTCTTTCT
65 CTCCTTTTCTTCTTC-TTCTTTCT
44831265 TTC
1 TTC
44831268 CCTCCCCTTC
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
82 3 0.04
83 12 0.16
84 4 0.05
85 8 0.10
86 11 0.14
87 39 0.51
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (87 bp):
TTCTTCTTTTTTCTTCTCTTCTCCTCTCCTTTTCTTTCCTTCCTTCTTTCTTCTTTCTTTTCCTC
TCCTTTTCTTCTTCTTCTTTCT
Found at i:44831278 original size:26 final size:25
Alignment explanation
Indices: 44831223--44831278 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
44831213 TTCTTTCTTT
44831223 CCTTC-TTTTTCTTTCTTTCCTCTC
1 CCTTCTTTTTTCTTTCTTTCCTCTC
*
44831247 CTTTCTTTCTTTCTTTCTTTCC-CTCC
1 CCTTCTTT-TTTCTTTCTTTCCTCT-C
44831273 CCTTCT
1 CCTTCT
44831279 GCCCCCCACC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 4 0.15
25 4 0.15
26 19 0.70
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (25 bp):
CCTTCTTTTTTCTTTCTTTCCTCTC
Found at i:44831383 original size:27 final size:27
Alignment explanation
Indices: 44831308--44831375 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
44831298 TATTATTAAG
*
44831308 TGGTGCCACCAATGGTATTGGCACCAT
1 TGGTGCCGCCAATGGTATTGGCACCAT
* *
44831335 TGGTGCCGCCAATGGTTTTGGCACCTT
1 TGGTGCCGCCAATGGTATTGGCACCAT
44831362 TGGTGCCGCCAATG
1 TGGTGCCGCCAATG
44831376 CCATTGGCGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.16, C:0.26, G:0.29, T:0.28
Consensus pattern (27 bp):
TGGTGCCGCCAATGGTATTGGCACCAT
Found at i:44831478 original size:27 final size:28
Alignment explanation
Indices: 44831443--44831513 Score: 119
Period size: 27 Copynumber: 2.6 Consensus size: 28
44831433 TTTATTTTTT
44831443 TATATATTTTGGTAAAT-AAAAAAATTA
1 TATATATTTTGGTAAATAAAAAAAATTA
44831470 TATATATTTTGGTAAATAAAAAAAATTA
1 TATATATTTTGGTAAATAAAAAAAATTA
*
44831498 TAT-TATTTTGATAAAT
1 TATATATTTTGGTAAAT
44831514 TTTTATTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
27 29 0.69
28 13 0.31
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (28 bp):
TATATATTTTGGTAAATAAAAAAAATTA
Found at i:44831525 original size:19 final size:19
Alignment explanation
Indices: 44831498--44831536 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
44831488 AAAAAAATTA
44831498 TATTATTTTGATAA-ATTTT
1 TATTATTTT-ATAATATTTT
*
44831517 TATTTTTTTATAATATTTT
1 TATTATTTTATAATATTTT
44831536 T
1 T
44831537 GTAAAAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (19 bp):
TATTATTTTATAATATTTT
Found at i:44841256 original size:58 final size:58
Alignment explanation
Indices: 44841186--44841301 Score: 187
Period size: 58 Copynumber: 2.0 Consensus size: 58
44841176 TGTGGCGTTA
44841186 GCTATACCTTTGGTTCCTATCTCGTTAGATAATGGGTCAAGGTTTATTTACTGATTTC
1 GCTATACCTTTGGTTCCTATCTCGTTAGATAATGGGTCAAGGTTTATTTACTGATTTC
* * * * *
44841244 GCTATACCTTTGGTTGCTTTCTTGTTAGATAGTGGGTCAAGGTTTATTTGCTGATTTC
1 GCTATACCTTTGGTTCCTATCTCGTTAGATAATGGGTCAAGGTTTATTTACTGATTTC
44841302 ATTTTTTCAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.18, C:0.16, G:0.22, T:0.45
Consensus pattern (58 bp):
GCTATACCTTTGGTTCCTATCTCGTTAGATAATGGGTCAAGGTTTATTTACTGATTTC
Found at i:44849711 original size:12 final size:12
Alignment explanation
Indices: 44849696--44849745 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
44849686 ATTTTTCGAT
44849696 TTTTTTTTTAAA
1 TTTTTTTTTAAA
* **
44849708 TTTTCTTTTCGA
1 TTTTTTTTTAAA
44849720 -TTTTTTTT-AA
1 TTTTTTTTTAAA
44849730 TTTTTTTTTCAAA
1 TTTTTTTTT-AAA
44849743 TTT
1 TTT
44849746 CCTCTTCTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
10 1 0.03
11 15 0.50
12 9 0.30
13 5 0.17
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.74
Consensus pattern (12 bp):
TTTTTTTTTAAA
Found at i:44849726 original size:22 final size:22
Alignment explanation
Indices: 44849698--44849739 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
44849688 TTTTCGATTT
44849698 TTTTTTTAAATTTTCTTTTCGA
1 TTTTTTTAAATTTTCTTTTCGA
* *
44849720 TTTTTTTTAATTTTTTTTTC
1 TTTTTTTAAATTTTCTTTTC
44849740 AAATTTCCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTTTTTAAATTTTCTTTTCGA
Found at i:44849759 original size:35 final size:35
Alignment explanation
Indices: 44849694--44849762 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
44849684 CGATTTTTCG
* * *
44849694 ATTTTTTTTTTAAATTTTCTTTTCGATTTTTTTTA
1 ATTTTTTTTTCAAATTTCCTCTTCGATTTTTTTTA
**
44849729 ATTTTTTTTTCAAATTTCCTCTTCTCTTTTTTTT
1 ATTTTTTTTTCAAATTTCCTCTTCGATTTTTTTT
44849763 TTCAATTACA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.14, C:0.12, G:0.01, T:0.72
Consensus pattern (35 bp):
ATTTTTTTTTCAAATTTCCTCTTCGATTTTTTTTA
Found at i:44852444 original size:42 final size:41
Alignment explanation
Indices: 44852304--44852426 Score: 158
Period size: 41 Copynumber: 3.0 Consensus size: 41
44852294 TTAAATAGAT
* * * * *
44852304 TCACCGGCACTTAGTCTGTTAGACTTAAAGCCTGATTCAGA
1 TCACCGACACTTAGCCTGCTAGGCTTAAAACCTGATTCAGA
*
44852345 TCACCTG-CACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
1 TCACC-GACACTTAGCCTGCTAGGCTTAAAACCTGATTCAGA
*
44852386 TCACCGACACTTAGCCTGCTAGGTTTTAAAACCTGATTCAG
1 TCACCGACACTTAGCCTGCTAGG-CTTAAAACCTGATTCAG
44852427 TACACTGGCT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
40 1 0.01
41 55 0.76
42 16 0.22
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (41 bp):
TCACCGACACTTAGCCTGCTAGGCTTAAAACCTGATTCAGA
Found at i:44853002 original size:76 final size:75
Alignment explanation
Indices: 44852791--44853005 Score: 216
Period size: 77 Copynumber: 2.8 Consensus size: 75
44852781 TACATTTAAC
* * ** *
44852791 ATTCGAATCTCACATATACCTATATAATTTCATATCCCAT-TTCAATACAAGAACTTATACATGT
1 ATTCGAATCTAACATATACATATATAATTTCAT-TCTTATATTCAATACAAGAA-TTATACATGC
* *
44852855 ACATATATACAT
64 ACACACATACAT
* * * * * * *
44852867 ATTCGAATCTACATATATACATATATAATTTTATACTTACATTCAAAACAAGTATTTATACTTGC
1 ATTCGAATCTA-ACATATACATATATAATTTCATTCTTATATTCAATACAAG-AATTATACATGC
*
44852932 ATACACATACAT
64 ACACACATACAT
* * *
44852944 ATTCGAATTTAACATATACATATATAATTTCATTCTTATACTCAATATAAGCAATTATACAT
1 ATTCGAATCTAACATATACATATATAATTTCATTCTTATATTCAATACAAG-AATTATACAT
44853006 ATGTATACAT
Statistics
Matches: 110, Mismatches: 26, Indels: 6
0.77 0.18 0.04
Matches are distributed among these distances:
76 53 0.48
77 56 0.51
78 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.38
Consensus pattern (75 bp):
ATTCGAATCTAACATATACATATATAATTTCATTCTTATATTCAATACAAGAATTATACATGCAC
ACACATACAT
Found at i:44855659 original size:51 final size:51
Alignment explanation
Indices: 44855596--44855699 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 51
44855586 GCTCGATGCC
* *
44855596 TAGCAGGTTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAGCAGGCTT
1 TAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGACTAGCAGGCTT
*
44855647 TAGCAGGCTTAATGCCGGTGAATTATTTTAGACTTTATGACTAGCAGGCTT
1 TAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGACTAGCAGGCTT
44855698 TA
1 TA
44855700 TGCCGGTGTA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (51 bp):
TAGCAGGCTTAATGCCGGTGAATTATTTCAGACTTTATGACTAGCAGGCTT
Found at i:44862129 original size:84 final size:83
Alignment explanation
Indices: 44861958--44862118 Score: 202
Period size: 83 Copynumber: 1.9 Consensus size: 83
44861948 GTGAATTGTC
* * *
44861958 AAAAGAAAACCTAGAATTTTAAAGACAAAAAAATGTCTTCTTCTGCATTGATTCTTATATCAACC
1 AAAAGAAAACCTAGAATTTTAAAGACAAAAAAATCTCTTATTCTGCATTGATTCTTATATAAACC
**
44862023 ATGATTTTTGAGAACTGAA
66 ATGATTTTCCAGAAC-GAA
44862042 AAAAGAAAACCT-GAAATTTTAAAGA-AAAAAAATCTCTTATTCT-CAATTGATTCTTATATAAA
1 AAAAGAAAACCTAG-AATTTTAAAGACAAAAAAATCTCTTATTCTGC-ATTGATTCTTATAT---
44862104 AAACCATGATTTTCC
61 AAACCATGATTTTCC
44862119 CAGACCAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
82 1 0.01
83 31 0.46
84 23 0.34
86 12 0.18
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.32
Consensus pattern (83 bp):
AAAAGAAAACCTAGAATTTTAAAGACAAAAAAATCTCTTATTCTGCATTGATTCTTATATAAACC
ATGATTTTCCAGAACGAA
Found at i:44862854 original size:87 final size:87
Alignment explanation
Indices: 44862763--44862923 Score: 243
Period size: 87 Copynumber: 1.9 Consensus size: 87
44862753 AAAAACACAA
* * *
44862763 GTTTTTGAGAAAAGAATCAATGGAAAAGAAGACA-TTTTTTTGTCTTTAAAATTATGGGTTTTCT
1 GTTTTTAAGAAAAGAATCAATGGAAAAGAAGACATTTTTTTTGTCTTTAAAAATATAGGTTTT-T
44862827 TTTTTCAGTTCTCAAAAATCATG
65 TTTTTCAGTTCTCAAAAATCATG
* * * *
44862850 GTTTTTAAGAAAAGAATCAATTGAGAAGAAGGCATTTTTTTTGTCTTTAAAAATCTAGGTTTTTT
1 GTTTTTAAGAAAAGAATCAATGGAAAAGAAGACATTTTTTTTGTCTTTAAAAATATAGGTTTTTT
44862915 TTTTCAGTT
66 TTTTCAGTT
44862924 TACTGGGTTC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
87 41 0.62
88 25 0.38
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.43
Consensus pattern (87 bp):
GTTTTTAAGAAAAGAATCAATGGAAAAGAAGACATTTTTTTTGTCTTTAAAAATATAGGTTTTTT
TTTTCAGTTCTCAAAAATCATG
Found at i:44862953 original size:88 final size:88
Alignment explanation
Indices: 44862763--44862994 Score: 256
Period size: 88 Copynumber: 2.6 Consensus size: 88
44862753 AAAAACACAA
* * * * *
44862763 GTTTTTGAGAAAAGAATCAATGGAAAAGAAGACA-TTTTTTTGTCTTTAAAATTATGGGTTTTCT
1 GTTTTTGAGAAAAGAATCAATGGAGAAGAAGGCATTTTTTTTGTCTTTAAAAATCTAGGTTTTCT
44862827 TTTTTCAGTTCTCAAAAATCATG
66 TTTTTCAGTTCTCAAAAATCATG
* *
44862850 GTTTTTAAGAAAAGAATCAATTGAGAAGAAGGCATTTTTTTTGTCTTTAAAAATCTAGGTTTT-T
1 GTTTTTGAGAAAAGAATCAATGGAGAAGAAGGCATTTTTTTTGTCTTTAAAAATCTAGGTTTTCT
*****
44862914 TTTTTCAGTT-TACTGGGTTCAATG
66 TTTTTCAGTTCT-CAAAAATC-ATG
* * *
44862938 GTTTTTGAGATAAGAATCAATGGAGAATAAGG-TTTGAATTTTTTGTCTTTAAAAATC
1 GTTTTTGAGAAAAGAATCAATGGAGAAGAAGGCATT---TTTTTTGTCTTTAAAAATC
44862995 AGATGGAGGG
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
86 1 0.01
87 46 0.38
88 56 0.46
90 19 0.16
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (88 bp):
GTTTTTGAGAAAAGAATCAATGGAGAAGAAGGCATTTTTTTTGTCTTTAAAAATCTAGGTTTTCT
TTTTTCAGTTCTCAAAAATCATG
Found at i:44865496 original size:19 final size:21
Alignment explanation
Indices: 44865443--44865497 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
44865433 GTGGAAATCT
* *
44865443 CACACACCCGTGTGGCTAAGG
1 CACACAGCCGTGTGTCTAAGG
*
44865464 GACACAGCCGTGTGTCTAAGG
1 CACACAGCCGTGTGTCTAAGG
44865485 CACAC-GCC-TGTGT
1 CACACAGCCGTGTGT
44865498 AAAAATTGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 5 0.17
20 3 0.10
21 22 0.73
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (21 bp):
CACACAGCCGTGTGTCTAAGG
Found at i:44879172 original size:23 final size:25
Alignment explanation
Indices: 44879146--44879191 Score: 78
Period size: 23 Copynumber: 1.9 Consensus size: 25
44879136 GTGGAGTGAA
44879146 AATTCTCT-TTGAG-TTTCTTTAAG
1 AATTCTCTCTTGAGTTTTCTTTAAG
44879169 AATTCTCTCTTGAGTTTTCTTTA
1 AATTCTCTCTTGAGTTTTCTTTA
44879192 GAAGTAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 8 0.38
24 5 0.24
25 8 0.38
ACGTcount: A:0.20, C:0.15, G:0.11, T:0.54
Consensus pattern (25 bp):
AATTCTCTCTTGAGTTTTCTTTAAG
Found at i:44880906 original size:7 final size:7
Alignment explanation
Indices: 44880894--44880924 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
44880884 GTGAGCATTT
44880894 ATATGAG
1 ATATGAG
44880901 ATATGAG
1 ATATGAG
44880908 ATATGAG
1 ATATGAG
44880915 ATATGAG
1 ATATGAG
44880922 ATA
1 ATA
44880925 GAGGGGGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.26, T:0.29
Consensus pattern (7 bp):
ATATGAG
Found at i:44887505 original size:25 final size:25
Alignment explanation
Indices: 44887466--44887559 Score: 86
Period size: 25 Copynumber: 3.8 Consensus size: 25
44887456 TTTCCATATA
*
44887466 TGGCTCGTAATAAGCTTCCCGATAAT
1 TGGCTC-TCATAAGCTTCCCGATAAT
*
44887492 TGGCTCTCATAAGCTTCCTGATTAA-
1 TGGCTCTCATAAGCTTCCCGA-TAAT
* *
44887517 TGGATCTC-TGGAGCTTCCCGAT-AT
1 TGGCTCTCAT-AAGCTTCCCGATAAT
* *
44887541 TGGCTCACATGAGCTTCCC
1 TGGCTCTCATAAGCTTCCC
44887560 TATTATGACC
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
23 1 0.02
24 17 0.30
25 30 0.53
26 9 0.16
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (25 bp):
TGGCTCTCATAAGCTTCCCGATAAT
Found at i:44887581 original size:49 final size:50
Alignment explanation
Indices: 44887478--44887572 Score: 126
Period size: 49 Copynumber: 2.0 Consensus size: 50
44887468 GCTCGTAATA
* * *
44887478 AGCTTCCCGATAATTGGCTCTCATAAGCTT-CCTGATTAATGGATCTCTGG
1 AGCTTCCCGAT-ATTGGCTCACATGAGCTTCCCTGATTAATGGACCTCTGG
44887528 AGCTTCCCGATATTGGCTCACATGAGCTTCCCT-ATT-AT-GACCTCT
1 AGCTTCCCGATATTGGCTCACATGAGCTTCCCTGATTAATGGACCTCT
44887573 TATGAGCTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
47 6 0.15
48 2 0.05
49 19 0.46
50 14 0.34
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (50 bp):
AGCTTCCCGATATTGGCTCACATGAGCTTCCCTGATTAATGGACCTCTGG
Found at i:44890380 original size:54 final size:54
Alignment explanation
Indices: 44890298--44890418 Score: 215
Period size: 54 Copynumber: 2.2 Consensus size: 54
44890288 TCCCTCTCTT
* *
44890298 CTAATTCAACTAGAAGATTGATTTTTCTATTAAATAAGTATTGTTTGTGTTCTC
1 CTAATTCAACTAGAAGATTGATTTTTCTATTAAATAAGTATTATTTGTATTCTC
*
44890352 CTAATTCAACTAGAAGATTGATTTTTCTATTAAATAAGTATTATTTGTATTCTT
1 CTAATTCAACTAGAAGATTGATTTTTCTATTAAATAAGTATTATTTGTATTCTC
44890406 CTAATTCAACTAG
1 CTAATTCAACTAG
44890419 GGTTCCTCTA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (54 bp):
CTAATTCAACTAGAAGATTGATTTTTCTATTAAATAAGTATTATTTGTATTCTC
Found at i:44890589 original size:2 final size:2
Alignment explanation
Indices: 44890582--44890610 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
44890572 AGTTTCTATA
44890582 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
44890611 TTTACTTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:44897256 original size:20 final size:20
Alignment explanation
Indices: 44897233--44897295 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
44897223 TATTGAAGTA
*
44897233 CAATCAGGGGCACGTATGTG
1 CAATCAGGGGCACATATGTG
* * * *
44897253 CAATTAGGGGTACCA-AAGTA
1 CAATCAGGGGCA-CATATGTG
*
44897273 CAATCAGGGGCATATATGTG
1 CAATCAGGGGCACATATGTG
44897293 CAA
1 CAA
44897296 ACATTCAATA
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (20 bp):
CAATCAGGGGCACATATGTG
Found at i:44901598 original size:37 final size:37
Alignment explanation
Indices: 44901522--44901600 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
44901512 TTATTACGAA
* * * *
44901522 GTCTTACCCGGACATAATCTCCACACGAAGTTATAGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCACAGG
* *
44901559 GTCTTACCCGGACAAAATCCCCACACGTAGTCACCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCACAGG
44901596 GTCTT
1 GTCTT
44901601 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCACAGG
Found at i:44901797 original size:47 final size:47
Alignment explanation
Indices: 44901719--44901961 Score: 369
Period size: 47 Copynumber: 5.1 Consensus size: 47
44901709 CCCTTCGGGA
* * * * * *
44901719 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44901766 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44901813 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44901860 CTTATCACGTATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44901911 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44901958 CTTA
1 CTTA
44901962 CTATCATTTC
Statistics
Matches: 181, Mismatches: 11, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
47 134 0.74
51 47 0.26
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44901913 original size:98 final size:94
Alignment explanation
Indices: 44901719--44901961 Score: 369
Period size: 98 Copynumber: 2.5 Consensus size: 94
44901709 CCCTTCGGGA
* * * * * * * *
44901719 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
44901784 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
44901813 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATATAT
44901878 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
44901911 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
44901962 CTATCATTTC
Statistics
Matches: 136, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
94 47 0.35
98 89 0.65
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:44909140 original size:20 final size:19
Alignment explanation
Indices: 44909117--44909252 Score: 74
Period size: 20 Copynumber: 6.8 Consensus size: 19
44909107 GGGTATCGAA
44909117 GTACAAACAGGGGCACACAT
1 GTACAAACAGGGGCAC-CAT
* * *
44909137 GTACAAACAAGGGTACCGAA
1 GTACAAACAGGGGCACC-AT
* *
44909157 GAACAAACAGGGGCACTTAT
1 GTACAAACAGGGGCAC-CAT
* * * * *
44909177 GTGCGAACAGGGGTACTGAA
1 GTACAAACAGGGGCAC-CAT
*
44909197 GTACAAACAGGGGCACGTAT
1 GTACAAACAGGGGCAC-CAT
* * * *
44909217 GTGCAATCAGGGGTACCGAA
1 GTACAAACAGGGGCACC-AT
*
44909237 GTACAATCAGGGGCAC
1 GTACAAACAGGGGCAC
44909253 ATATGTGCAA
Statistics
Matches: 86, Mismatches: 27, Indels: 6
0.72 0.23 0.05
Matches are distributed among these distances:
19 1 0.01
20 85 0.99
ACGTcount: A:0.36, C:0.21, G:0.30, T:0.13
Consensus pattern (19 bp):
GTACAAACAGGGGCACCAT
Found at i:44909157 original size:40 final size:40
Alignment explanation
Indices: 44909105--44909265 Score: 223
Period size: 40 Copynumber: 4.0 Consensus size: 40
44909095 AAATGCGTTT
* * *
44909105 AGGGGTATCGAAGTACAAACAGGGGCACACATGTACAAAC
1 AGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAAAC
* * * *
44909145 AAGGGTACCGAAGAACAAACAGGGGCACTTATGTGCGAAC
1 AGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAAAC
* * *
44909185 AGGGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATC
1 AGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAAAC
*
44909225 AGGGGTACCGAAGTACAATCAGGGGCACATATGTGCAAAC
1 AGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAAAC
44909265 A
1 A
44909266 TTCAATAATT
Statistics
Matches: 104, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.37, C:0.19, G:0.30, T:0.14
Consensus pattern (40 bp):
AGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAAAC
Found at i:44912350 original size:16 final size:16
Alignment explanation
Indices: 44912329--44912375 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
44912319 TCTATGATGT
*
44912329 TTGATTGTGTTAATGC
1 TTGATTGTGTTAACGC
44912345 TTGATTGTGTTAACGC
1 TTGATTGTGTTAACGC
44912361 TTGATTGTGTTAACG
1 TTGATTGTGTTAACG
44912376 TGAGTGACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.19, C:0.09, G:0.26, T:0.47
Consensus pattern (16 bp):
TTGATTGTGTTAACGC
Found at i:44918180 original size:40 final size:40
Alignment explanation
Indices: 44918091--44918199 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
44918081 CGTGATTCAG
* **
44918091 GTGGATCAGCTCTTATGATCTTCTG-TTGGCGTGTTTCTA
1 GTGGATCAGCTCTTATGAGCTTCTGTTTGGCGCATTTCTA
* *
44918130 GTGAACCAGCTCTTATGAGCTTCTGTTTGGCGCATTTCTA
1 GTGGATCAGCTCTTATGAGCTTCTGTTTGGCGCATTTCTA
* *
44918170 TTGGATCAGCTCTTATGAGCTTCTATTTGG
1 GTGGATCAGCTCTTATGAGCTTCTGTTTGG
44918200 TGTGTTCGAT
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 22 0.37
40 38 0.63
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (40 bp):
GTGGATCAGCTCTTATGAGCTTCTGTTTGGCGCATTTCTA
Found at i:44919078 original size:103 final size:103
Alignment explanation
Indices: 44918899--44919108 Score: 393
Period size: 103 Copynumber: 2.0 Consensus size: 103
44918889 GTATAATGTT
*
44918899 TATAAAATACTATTAAGTTAGGAATGAAAAATATATATAATGTTGATAGACTTACTCATTTATGA
1 TATAAAATACTATTAAGTTAGGAATGAAAAATATATATAATGTTAATAGACTTACTCATTTATGA
*
44918964 GTTGATGGTTATGTAGTTGATAAATCTTGAGGTATTGG
66 GTTGATGGTTATGTAGTTGATAAATCTTGAGGTATTAG
*
44919002 TATAAAATACTATTAAGTTAGGAATGAAAAATATATATGATGTTAATAGACTTACTCATTTATGA
1 TATAAAATACTATTAAGTTAGGAATGAAAAATATATATAATGTTAATAGACTTACTCATTTATGA
44919067 GTTGATGGTTATGTAGTTGATAAATCTTGAGGTATTAG
66 GTTGATGGTTATGTAGTTGATAAATCTTGAGGTATTAG
44919105 TATA
1 TATA
44919109 GGTTTATATT
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 104 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.39
Consensus pattern (103 bp):
TATAAAATACTATTAAGTTAGGAATGAAAAATATATATAATGTTAATAGACTTACTCATTTATGA
GTTGATGGTTATGTAGTTGATAAATCTTGAGGTATTAG
Found at i:44922075 original size:25 final size:25
Alignment explanation
Indices: 44922047--44922107 Score: 113
Period size: 25 Copynumber: 2.4 Consensus size: 25
44922037 TTGTACACTC
*
44922047 TACTGAGAACACTGTAGATAGTGTA
1 TACTGAAAACACTGTAGATAGTGTA
44922072 TACTGAAAACACTGTAGATAGTGTA
1 TACTGAAAACACTGTAGATAGTGTA
44922097 TACTGAAAACA
1 TACTGAAAACA
44922108 GTAGCGAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (25 bp):
TACTGAAAACACTGTAGATAGTGTA
Found at i:44941932 original size:34 final size:34
Alignment explanation
Indices: 44941889--44941966 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
44941879 AAATGATCCG
* *
44941889 TGTAAATCATGTATTTTATGTAGCTTATAAACCA
1 TGTAAATCATGTATTTCATGTAACTTATAAACCA
* * *
44941923 TGTAAATCATGTATTTCATGTAATTTATAATCCT
1 TGTAAATCATGTATTTCATGTAACTTATAAACCA
44941957 TGTAAATCAT
1 TGTAAATCAT
44941967 ATAACTCTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.44
Consensus pattern (34 bp):
TGTAAATCATGTATTTCATGTAACTTATAAACCA
Found at i:44942194 original size:23 final size:23
Alignment explanation
Indices: 44942141--44942221 Score: 119
Period size: 23 Copynumber: 3.6 Consensus size: 23
44942131 CTCAGCTGGT
** *
44942141 AAACGGTAAGCTCTATCGAGCT-
1 AAACGGTAAGCTCCGTAGAGCTA
*
44942163 GAACGGTAAGCTCCGTAGAGCTA
1 AAACGGTAAGCTCCGTAGAGCTA
44942186 AAACGGTAAGCTCCGTAGAGCTA
1 AAACGGTAAGCTCCGTAGAGCTA
44942209 AAACGGTAAGCTC
1 AAACGGTAAGCTC
44942222 ATAAGAACTG
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
22 18 0.34
23 35 0.66
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (23 bp):
AAACGGTAAGCTCCGTAGAGCTA
Found at i:44943903 original size:27 final size:27
Alignment explanation
Indices: 44943858--44943960 Score: 136
Period size: 27 Copynumber: 3.8 Consensus size: 27
44943848 AGTACATTCA
* * *
44943858 CCACAAAGGCATTTC-TTTCAGAGTTAA
1 CCACAAAGGC-TTCCTTTTCAAAGTTAG
*
44943885 CCACAAGGGCTTCCTTTTCAAAGTTAG
1 CCACAAAGGCTTCCTTTTCAAAGTTAG
*
44943912 CCACAAAGGCTTCCTTTTCATAGTTAG
1 CCACAAAGGCTTCCTTTTCAAAGTTAG
*
44943939 CCACAAAGGCTTCCTCTTCAAA
1 CCACAAAGGCTTCCTTTTCAAA
44943961 CGCTTTTATG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 3 0.04
27 64 0.96
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (27 bp):
CCACAAAGGCTTCCTTTTCAAAGTTAG
Found at i:44947058 original size:12 final size:12
Alignment explanation
Indices: 44947041--44947066 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
44947031 TCAGGCATAC
44947041 CCTGATTCTATA
1 CCTGATTCTATA
44947053 CCTGATTCTATA
1 CCTGATTCTATA
44947065 CC
1 CC
44947067 ATACATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (12 bp):
CCTGATTCTATA
Found at i:44953853 original size:27 final size:28
Alignment explanation
Indices: 44953814--44953904 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 28
44953804 CATGCAGTAT
* *
44953814 CAGT-ACAGTGTGGGCC-TAGCCCGATA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
*
44953840 CAGTAACAATGTGGGCCTTAGCCTAATA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
* * *
44953868 CAGTAATAGTGT-GGCCTTAGCTCAATA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
*
44953895 TAGTAACAAT
1 CAGTAACAAT
44953905 ATAGTGCCAT
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
26 4 0.08
27 31 0.58
28 18 0.34
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (28 bp):
CAGTAACAATGTGGGCCTTAGCCCAATA
Found at i:44954036 original size:26 final size:26
Alignment explanation
Indices: 44954007--44954061 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
44953997 AAGACACCAA
* * *
44954007 TATCGCAGCAAAGTTTCCAATAATAG
1 TATCGCAGCAAAGCTGCCAATAACAG
44954033 TATCGCAGCAAAGCTGCCAATAACAG
1 TATCGCAGCAAAGCTGCCAATAACAG
44954059 TAT
1 TAT
44954062 ATGTGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAATAACAG
Found at i:44954334 original size:27 final size:26
Alignment explanation
Indices: 44954258--44954343 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 26
44954248 TATAATAGTT
* *
44954258 ATTTTACCCTATGGGGGTATTTTTGTC
1 ATTTTACCTTATGGGGGTA-TTTCGTC
*
44954285 ATTTTACCTTATGGAGGTATTTCGATC
1 ATTTTACCTTATGGGGGTATTTCG-TC
44954312 ATTTTACCTTATGGGGGTATTTCGGTC
1 ATTTTACCTTATGGGGGTATTTC-GTC
44954339 -TTTTA
1 ATTTTA
44954344 TTGACCCCTC
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
26 9 0.17
27 43 0.81
28 1 0.02
ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48
Consensus pattern (26 bp):
ATTTTACCTTATGGGGGTATTTCGTC
Found at i:44961595 original size:27 final size:27
Alignment explanation
Indices: 44961565--44961677 Score: 79
Period size: 27 Copynumber: 4.2 Consensus size: 27
44961555 ATCTCCTAGA
*
44961565 GGTATAAT-AGTCATTTTACCCTATGTG
1 GGTAT-ATCAGTCATTTTACCCTATGGG
* *
44961592 GGTATTTCGGTCATTTTACCCTATGGG
1 GGTATATCAGTCATTTTACCCTATGGG
** * *
44961619 GGTAT-TTTGATAATTTTACCCTGTGGG
1 GGTATATCAG-TCATTTTACCCTATGGG
** * *
44961646 GGTAT-TTTGATAATTTTACCCTATGAG
1 GGTATATCAG-TCATTTTACCCTATGGG
44961673 GGTAT
1 GGTAT
44961678 TTTGGTCTTT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 3 0.04
27 72 0.96
ACGTcount: A:0.21, C:0.13, G:0.23, T:0.42
Consensus pattern (27 bp):
GGTATATCAGTCATTTTACCCTATGGG
Found at i:44961678 original size:27 final size:27
Alignment explanation
Indices: 44961577--44961681 Score: 156
Period size: 27 Copynumber: 3.9 Consensus size: 27
44961567 TATAATAGTC
* * * *
44961577 ATTTTACCCTATGTGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTTGATA
44961604 ATTTTACCCTATGGGGGTATTTTGATA
1 ATTTTACCCTATGGGGGTATTTTGATA
*
44961631 ATTTTACCCTGTGGGGGTATTTTGATA
1 ATTTTACCCTATGGGGGTATTTTGATA
*
44961658 ATTTTACCCTATGAGGGTATTTTG
1 ATTTTACCCTATGGGGGTATTTTG
44961682 GTCTTTTAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.19, C:0.13, G:0.23, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTTGATA
Found at i:44973059 original size:7 final size:7
Alignment explanation
Indices: 44973033--44973103 Score: 51
Period size: 7 Copynumber: 10.4 Consensus size: 7
44973023 TGAGAGCTAA
*
44973033 GAGAGTT
1 GAGAGAT
44973040 GAGAGA-
1 GAGAGAT
44973046 GAG-GAT
1 GAGAGAT
44973052 GAGAGAT
1 GAGAGAT
44973059 GAGAGGGAT
1 GAGA--GAT
*
44973068 GAGGGAT
1 GAGAGAT
*
44973075 GAGGGAT
1 GAGAGAT
*
44973082 GAGGGAT
1 GAGAGAT
44973089 GA-AG-T
1 GAGAGAT
*
44973094 GAGAAAT
1 GAGAGAT
44973101 GAG
1 GAG
44973104 CTCTTATTTA
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
5 5 0.09
6 8 0.15
7 35 0.65
9 6 0.11
ACGTcount: A:0.37, C:0.00, G:0.49, T:0.14
Consensus pattern (7 bp):
GAGAGAT
Found at i:44973080 original size:14 final size:14
Alignment explanation
Indices: 44973061--44973090 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
44973051 TGAGAGATGA
44973061 GAGGGATGAGGGAT
1 GAGGGATGAGGGAT
44973075 GAGGGATGAGGGAT
1 GAGGGATGAGGGAT
44973089 GA
1 GA
44973091 AGTGAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.57, T:0.13
Consensus pattern (14 bp):
GAGGGATGAGGGAT
Found at i:44980050 original size:22 final size:23
Alignment explanation
Indices: 44979988--44980032 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
44979978 ATGCAATCTT
* *
44979988 ATATATGA-TATGCAATATTAGA
1 ATATATGATTTTGTAATATTAGA
44980010 ATATATGATTTTGTAATATTAGA
1 ATATATGATTTTGTAATATTAGA
44980033 GATTTGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.42, C:0.02, G:0.13, T:0.42
Consensus pattern (23 bp):
ATATATGATTTTGTAATATTAGA
Found at i:44980897 original size:28 final size:28
Alignment explanation
Indices: 44980834--44980903 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
44980824 TGATTCACTG
* * *
44980834 CAAAGGCATTTTCTTTCAGATTTAGCCA
1 CAAAGGCTTTTTTTTTCAGAGTTAGCCA
*
44980862 CAAAGGCTTTTTTTTTCATAGTTAGCCA
1 CAAAGGCTTTTTTTTTCAGAGTTAGCCA
*
44980890 CAAAGGCTTCTTTT
1 CAAAGGCTTTTTTT
44980904 CTTGACATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (28 bp):
CAAAGGCTTTTTTTTTCAGAGTTAGCCA
Found at i:44983402 original size:61 final size:61
Alignment explanation
Indices: 44983327--44983461 Score: 173
Period size: 61 Copynumber: 2.2 Consensus size: 61
44983317 TAAAGGATAG
* * * **
44983327 CCTTTATGGCAAAACCCTGGATAGGAAAACCTTTGTGGCGAGTACT-GAAAGTAAATGGTAA
1 CCTTTGTGGCAAAACCCTGAACAGGAAAACCTTTGTGGCGAGTACTAG-AAGTAAATGACAA
** * *
44983388 CCTTTGTGGCAAAACTTTGAACAGGAAAGCCTTTGTGGCGAGTACTAGATGTAAATGACAA
1 CCTTTGTGGCAAAACCCTGAACAGGAAAACCTTTGTGGCGAGTACTAGAAGTAAATGACAA
44983449 CCTTTGTGGCAAA
1 CCTTTGTGGCAAA
44983462 TCTCAGGAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
61 63 0.98
62 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (61 bp):
CCTTTGTGGCAAAACCCTGAACAGGAAAACCTTTGTGGCGAGTACTAGAAGTAAATGACAA
Found at i:44983479 original size:61 final size:61
Alignment explanation
Indices: 44983351--44983489 Score: 147
Period size: 61 Copynumber: 2.3 Consensus size: 61
44983341 CCCTGGATAG
* ** ** *
44983351 GAAAACCTTTGTGGCGAGTACTGAAAGTAAATGGTAACCTTTGTGGCAAAACTTTGAACAG
1 GAAAGCCTTTGTGGCGAGTACTGAAAGTAAATGACAACCTTTGTGGCAAAACTAGGAACAC
* *
44983412 GAAAGCCTTTGTGGCGAGTACT-AGATGTAAATGACAACCTTTGTGGCAAATCTCAGGAA-AC
1 GAAAGCCTTTGTGGCGAGTACTGA-AAGTAAATGACAACCTTTGTGGCAAAACT-AGGAACAC
* **
44983473 GTAAGCCTAGGTGGCGA
1 GAAAGCCTTTGTGGCGA
44983490 ACCTCTACAA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
60 1 0.02
61 61 0.94
62 3 0.05
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (61 bp):
GAAAGCCTTTGTGGCGAGTACTGAAAGTAAATGACAACCTTTGTGGCAAAACTAGGAACAC
Found at i:45003642 original size:26 final size:27
Alignment explanation
Indices: 45003603--45003681 Score: 99
Period size: 26 Copynumber: 2.9 Consensus size: 27
45003593 CTATTTTACA
45003603 AATTTTACAGTTTTATCCCTATTTTTT
1 AATTTTACAGTTTTATCCCTATTTTTT
*
45003630 -ATTTTACAATTTTA-CTCCTATTTTTT
1 AATTTTACAGTTTTATC-CCTATTTTTT
* *
45003656 AGATTTTACAGTTTTGTTCCTATTTT
1 A-ATTTTACAGTTTTATCCCTATTTT
45003682 ACAAAAATCA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
25 1 0.02
26 23 0.52
28 20 0.45
ACGTcount: A:0.22, C:0.14, G:0.05, T:0.59
Consensus pattern (27 bp):
AATTTTACAGTTTTATCCCTATTTTTT
Found at i:45005509 original size:3 final size:3
Alignment explanation
Indices: 45005501--45005541 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
45005491 CTTGACTTTC
45005501 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
45005542 ATGGTTTTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:45010105 original size:23 final size:23
Alignment explanation
Indices: 45010074--45010124 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
45010064 ACCTACTTTC
* * *
45010074 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGCAATTTTCGGGATA
45010097 TTACAGTAGCAATTTTCGGGATA
1 TTACAGTAGCAATTTTCGGGATA
45010120 TTACA
1 TTACA
45010125 CTTTACCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (23 bp):
TTACAGTAGCAATTTTCGGGATA
Found at i:45017206 original size:23 final size:23
Alignment explanation
Indices: 45017179--45017225 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
45017169 ACTATATTAG
* * *
45017179 TGAGAAATTCACTTATTGTGAAA
1 TGAGAAACTCACCTATTGAGAAA
*
45017202 TGAGATACTCACCTATTGAGAAA
1 TGAGAAACTCACCTATTGAGAAA
45017225 T
1 T
45017226 TATGTTGCAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (23 bp):
TGAGAAACTCACCTATTGAGAAA
Found at i:45020409 original size:98 final size:97
Alignment explanation
Indices: 45020231--45020582 Score: 434
Period size: 98 Copynumber: 3.6 Consensus size: 97
45020221 AAGCTACCAG
* * * * * * * * *
45020231 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTCATTTCCCTGGCGTTGT
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CCAACCTTATCTCCCT-GCGTTGC
* *
45020296 ACTGGAACAGATTAAAGCTACAAATTATGGCGGA
64 AATGGAACAGATTAAAGCTATAAATTATGGCGGA
* * *
45020330 TCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTAAAGCCACCAACCTTATTTCCCTAGCGTTGCA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAACCTTATCTCCCT-GCGTTGCA
*
45020395 ATGGAATAGATTAAAGCTATAAATTATGGCGGA
65 ATGGAACAGATTAAAGCTATAAATTATGGCGGA
** * * *
45020428 TCTTATCTTCCTGAAGTTATAGTGGAGCAGATTTAAGCCACCAACATTATCTCCCTGTAGTTGCA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAACCTTATCTCCCTG-CGTTGCA
* * * *
45020493 GTGGAACAAATTAAAGCTATAAATTATGGTGAA
65 ATGGAACAGATTAAAGCTATAAATTATGGCGGA
* *
45020526 TCTTATCTTCCTGAAGTTGTAGTGGAGCAGATTGAAGCCACCATCCTTATCTCCCTG
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAACCTTATCTCCCTG
45020583 AAGATACAGC
Statistics
Matches: 222, Mismatches: 30, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
97 1 0.00
98 187 0.84
99 34 0.15
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (97 bp):
TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAACCTTATCTCCCTGCGTTGCAA
TGGAACAGATTAAAGCTATAAATTATGGCGGA
Found at i:45020648 original size:143 final size:143
Alignment explanation
Indices: 45020474--45020991 Score: 667
Period size: 143 Copynumber: 3.6 Consensus size: 143
45020464 GCCACCAACA
** * *
45020474 TTATCTCCCTGTAGTTGCAGTGGAACAAATTAAAGCTATAAATTATGGTGAATCTTATCTTCCTG
1 TTATCTCCCTGGCGTTGCAGTGGAACAAATTAAAGCTACAAATTATGGCGAATCTTATCTTCCTG
* * * * *
45020539 AAGTTGTAGTGGAGCAGATTGAAGCCACCATCCTTATCTCCCTGAAGATACAGCGGAGCAGACTG
66 AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGTAGACTG
*
45020604 AAGAAAATGAATC
131 AAGACAATGAATC
* *
45020617 TTATCTCCCTGGCGTTGCAGTGGAACAAATTAAAGCTACAAGTTATGGCAAATCTTATCTTCCTG
1 TTATCTCCCTGGCGTTGCAGTGGAACAAATTAAAGCTACAAATTATGGCGAATCTTATCTTCCTG
* * * * * *
45020682 AAGTTGCAGTGGAGCAGATTGAAGTCACCAGCCTTATCTCCTTAAAGTTGTATCAGAGTAGACTG
66 AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGTAGACTG
*
45020747 AAGACTATGAATC
131 AAGACAATGAATC
* * * * * * * *
45020760 TTATTTCTCTGGCATTGTAGTGGAACAGATTAAAGCTACAAGTTATGGCGGATCTTATCCTCCTG
1 TTATCTCCCTGGCGTTGCAGTGGAACAAATTAAAGCTACAAATTATGGCGAATCTTATCTTCCTG
* * *
45020825 AAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTGCAGCGGGGTAGACTG
66 AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGTAGACTG
**
45020890 AAGACAGCGAATC
131 AAGACAATGAATC
* * * * * * *
45020903 TTATTTCCCTGGCGTTGTAGTAGAACAAATTAAAACTACAAATCATGGAGGATCTTATCTTCCTG
1 TTATCTCCCTGGCGTTGCAGTGGAACAAATTAAAGCTACAAATTATGGCGAATCTTATCTTCCTG
* *
45020968 AAGTTACAGTGGAGCAGATCGAAG
66 AAGTTGCAGTGGAGCAGATTGAAG
45020992 ACATAATTCT
Statistics
Matches: 324, Mismatches: 51, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
143 324 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (143 bp):
TTATCTCCCTGGCGTTGCAGTGGAACAAATTAAAGCTACAAATTATGGCGAATCTTATCTTCCTG
AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGTAGACTG
AAGACAATGAATC
Found at i:45023864 original size:86 final size:86
Alignment explanation
Indices: 45023748--45024072 Score: 325
Period size: 86 Copynumber: 3.8 Consensus size: 86
45023738 AACAAGTGGC
* * * * *
45023748 GGCTAGTCCACAAAACCCAGTAGCAATTTGTTTAATCTGCGAATATGTTATGCACCCACAATAAG
1 GGCTCGTCCACAAAACCCAGTGGCAATTTGTTTAATCTGTGAATATGTTGTGCACTCACAATAAG
* *
45023813 TGACAGTAACTGCAAACATGT
66 TGACAGTAACTACAAATATGT
* * * **
45023834 GGCTTGTCCACAAAACCTAGTGGCAGTTTGTTTAATCTGTGAATATAATGTGCACTCAC-ATCAA
1 GGCTCGTCCACAAAACCCAGTGGCAATTTGTTTAATCTGTGAATATGTTGTGCACTCACAAT-AA
45023898 GTGACAGTAACTACAAATATGT
65 GTGACAGTAACTACAAATATGT
* * * * * * *
45023920 GACTCATCTACAAAACCCAGTGGCTAATTTGTTTAATCTATAAATATGTTGTGCACTCAAAACAA
1 GGCTCGTCCACAAAACCCAGTGGC-AATTTGTTTAATCTGTGAATATGTTGTGCACTCACAATAA
**
45023985 GTGGTAGTAACTACAAATATGT
65 GTGACAGTAACTACAAATATGT
* * * ** * * *
45024007 GGCTCGTCC-CCAAACCTAGTGACTGTTTGTTTAAT-T-TACAACCATGTTGTGCACTCACAACA
1 GGCTCGTCCACAAAACCCAGTGGCAATTTGTTTAATCTGT-GAA-TATGTTGTGCACTCACAATA
45024069 AGTG
64 AGTG
45024073 GAAGTAATTG
Statistics
Matches: 198, Mismatches: 36, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
83 1 0.01
84 3 0.02
85 34 0.17
86 102 0.52
87 57 0.29
88 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (86 bp):
GGCTCGTCCACAAAACCCAGTGGCAATTTGTTTAATCTGTGAATATGTTGTGCACTCACAATAAG
TGACAGTAACTACAAATATGT
Found at i:45025480 original size:22 final size:26
Alignment explanation
Indices: 45025454--45025514 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 26
45025444 AGCTGAAGAA
45025454 CGGTAAGCTC-TAGAGAG-TGA-A-AT
1 CGGTAAGCTCATA-AGAGCTGATATAT
45025477 -GGTAAGCTCATAAGAGCTGATATAT
1 CGGTAAGCTCATAAGAGCTGATATAT
45025502 CGGTAAGCTCATA
1 CGGTAAGCTCATA
45025515 CGGGCTGTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
22 13 0.39
23 5 0.15
24 1 0.03
25 2 0.06
26 12 0.36
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (26 bp):
CGGTAAGCTCATAAGAGCTGATATAT
Found at i:45027451 original size:25 final size:26
Alignment explanation
Indices: 45027404--45027453 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
45027394 AAGAATAAAT
45027404 AAATTAACTAAGTTTTCAAAAATAGA
1 AAATTAACTAAGTTTTCAAAAATAGA
45027430 AAATTAACTAAG-TTTCAAAAATAG
1 AAATTAACTAAGTTTTCAAAAATAG
45027454 TTATCATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.30
Consensus pattern (26 bp):
AAATTAACTAAGTTTTCAAAAATAGA
Found at i:45031985 original size:145 final size:146
Alignment explanation
Indices: 45031721--45032018 Score: 499
Period size: 145 Copynumber: 2.0 Consensus size: 146
45031711 AATATCAATG
* * *
45031721 TTTAATTAGTTTGTTAAAATGTTAGAATAAAATTAAAAAAAATAAATGTTATATAAAATATTTAA
1 TTTAATTACTTTGTTAAAATATTAGAATAAAATTAAAAAAAATAAATCTTATATAAAATATTTAA
* * * *
45031786 TTAAAATTTGATTCTTTTGTTTTAGTATTAAATTTATTTTCATGTTAGTTTCGGGTTTAGTTTTA
66 TCAAAATTTGATTATTTTATTTTAGTATTAAATTTATTTTCATGTTAGTTTCGGGTTTAGGTTTA
45031851 TTCAAATTCAAAATTT
131 TTCAAATTCAAAATTT
* *
45031867 TTTAATTACTTTGTTAAAATATTTGAATAAAATT-TAAAAAATAAATCTTATATAAAATATTTAA
1 TTTAATTACTTTGTTAAAATATTAGAATAAAATTAAAAAAAATAAATCTTATATAAAATATTTAA
45031931 TCAAAATTTGATTATTTTATTTTAGTATTAAATTTATTTTCATGTTAGTTTCGGGTTTAGGTTTA
66 TCAAAATTTGATTATTTTATTTTAGTATTAAATTTATTTTCATGTTAGTTTCGGGTTTAGGTTTA
45031996 TTCAAATTCAAAATTT
131 TTCAAATTCAAAATTT
*
45032012 TCTAATT
1 TTTAATT
45032019 TAATTTTTTT
Statistics
Matches: 142, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
145 111 0.78
146 31 0.22
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.49
Consensus pattern (146 bp):
TTTAATTACTTTGTTAAAATATTAGAATAAAATTAAAAAAAATAAATCTTATATAAAATATTTAA
TCAAAATTTGATTATTTTATTTTAGTATTAAATTTATTTTCATGTTAGTTTCGGGTTTAGGTTTA
TTCAAATTCAAAATTT
Found at i:45036010 original size:16 final size:17
Alignment explanation
Indices: 45035978--45036011 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
45035968 CAATTCAGTC
45035978 CAAAATTCATACTTTTG
1 CAAAATTCATACTTTTG
*
45035995 CAAAATT-ATGCTTTTG
1 CAAAATTCATACTTTTG
45036011 C
1 C
45036012 CTCTATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (17 bp):
CAAAATTCATACTTTTG
Found at i:45040000 original size:28 final size:28
Alignment explanation
Indices: 45039941--45040006 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
45039931 ATTAACTTGG
*
45039941 GAAAGAAAAAATTATTTAAATACCACTTAT
1 GAAA-AAAAAA-TATTTAAATACCACTCAT
*
45039971 GATAAAAAAAATATTTAAGTACCAC-CAT
1 GA-AAAAAAAATATTTAAATACCACTCAT
45039999 GAAAAAAA
1 GAAAAAAA
45040007 GTTTATGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
27 6 0.18
28 4 0.12
29 13 0.39
30 8 0.24
31 2 0.06
ACGTcount: A:0.58, C:0.11, G:0.08, T:0.24
Consensus pattern (28 bp):
GAAAAAAAAATATTTAAATACCACTCAT
Found at i:45044831 original size:30 final size:30
Alignment explanation
Indices: 45044797--45044890 Score: 152
Period size: 30 Copynumber: 3.1 Consensus size: 30
45044787 AAGTAGGATC
*
45044797 ACACGACCGTGTAACTCTCTGACTTGCCAT
1 ACACGGCCGTGTAACTCTCTGACTTGCCAT
* *
45044827 ACACGGCCGTATAACTCTCTGACTTACCAT
1 ACACGGCCGTGTAACTCTCTGACTTGCCAT
*
45044857 ACACGGCTGTGTAACTCTCTGACTTGCCAT
1 ACACGGCCGTGTAACTCTCTGACTTGCCAT
45044887 ACAC
1 ACAC
45044891 AGCCATGTCG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (30 bp):
ACACGGCCGTGTAACTCTCTGACTTGCCAT
Found at i:45044924 original size:42 final size:42
Alignment explanation
Indices: 45044865--45044952 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
45044855 ATACACGGCT
* *
45044865 GTGTAACTCTCTGACTTGCCATACACAGCCATGTCGCAGGCC
1 GTGTAACTCTCTAACTTGCCACACACAGCCATGTCGCAGGCC
* * * *
45044907 GTGTAACTCTCTAACTTGCCACACACAGTCGTGTGGTAGGCC
1 GTGTAACTCTCTAACTTGCCACACACAGCCATGTCGCAGGCC
45044949 GTGT
1 GTGT
45044953 GCTAGGCCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (42 bp):
GTGTAACTCTCTAACTTGCCACACACAGCCATGTCGCAGGCC
Found at i:45047666 original size:37 final size:37
Alignment explanation
Indices: 45047608--45047678 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
45047598 ACTACATGTG
* *
45047608 AGCTGGGAACAGAAAGGTTGCGAACTGATGGAGTGCA
1 AGCTGCGAACAGAAAGCTTGCGAACTGATGGAGTGCA
* * *
45047645 AGCTGCGAACAGAGAGCTTGCGCACTGGTGGAGT
1 AGCTGCGAACAGAAAGCTTGCGAACTGATGGAGT
45047679 ACGAGTTGTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.38, T:0.17
Consensus pattern (37 bp):
AGCTGCGAACAGAAAGCTTGCGAACTGATGGAGTGCA
Found at i:45049464 original size:18 final size:18
Alignment explanation
Indices: 45049421--45049464 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
45049411 ACCCAATCTA
* *
45049421 AACCCAAGTATTCAACCC
1 AACCCAATTACTCAACCC
45049439 AACCCAATTACTCAACCC
1 AACCCAATTACTCAACCC
45049457 AACCCAAT
1 AACCCAAT
45049465 CATAAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.41, C:0.41, G:0.02, T:0.16
Consensus pattern (18 bp):
AACCCAATTACTCAACCC
Found at i:45049585 original size:9 final size:9
Alignment explanation
Indices: 45049571--45049637 Score: 89
Period size: 9 Copynumber: 7.4 Consensus size: 9
45049561 GTAGTGATTC
*
45049571 AATTTGGTT
1 AATTCGGTT
*
45049580 AATTTGGTT
1 AATTCGGTT
*
45049589 AATTCGGGT
1 AATTCGGTT
45049598 AATTCGGTT
1 AATTCGGTT
*
45049607 AATTCGGGT
1 AATTCGGTT
*
45049616 AATTCGGGT
1 AATTCGGTT
45049625 AATTCGGTT
1 AATTCGGTT
45049634 AATT
1 AATT
45049638 TTTAACCAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 53 1.00
ACGTcount: A:0.24, C:0.07, G:0.25, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:45049606 original size:27 final size:27
Alignment explanation
Indices: 45049571--45049638 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
45049561 GTAGTGATTC
* *
45049571 AATTTGGTTAATTTGGTTAATTCGGGT
1 AATTCGGTTAATTTGGGTAATTCGGGT
*
45049598 AATTCGGTTAATTCGGGTAATTCGGGT
1 AATTCGGTTAATTTGGGTAATTCGGGT
45049625 AATTCGGTTAATTT
1 AATTCGGTTAATTT
45049639 TTAACCAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.24, C:0.07, G:0.25, T:0.44
Consensus pattern (27 bp):
AATTCGGTTAATTTGGGTAATTCGGGT
Found at i:45050218 original size:21 final size:22
Alignment explanation
Indices: 45050193--45050279 Score: 72
Period size: 21 Copynumber: 3.9 Consensus size: 22
45050183 CTCTCTCAAA
45050193 AATTTC-ATTATATAATAAAAT
1 AATTTCAATTATATAATAAAAT
* * *
45050214 AATTT-TATTTTAAAATAAAAT
1 AATTTCAATTATATAATAAAAT
*
45050235 AATTTCAATTTAATATAAT-TAAT
1 AATTTCAA-TT-ATATAATAAAAT
*
45050258 AAGTTTACTATTATATAATAAA
1 AA-TTT-CAATTATATAATAAA
45050280 TTGTTAAACA
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
21 23 0.45
22 1 0.02
23 14 0.27
24 11 0.22
25 2 0.04
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (22 bp):
AATTTCAATTATATAATAAAAT
Found at i:45050425 original size:24 final size:24
Alignment explanation
Indices: 45050379--45050426 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
45050369 ACTTTTTATT
* * **
45050379 TTATTAATTTATATTTTTTTATAA
1 TTATTAAATTATAATTTAATATAA
45050403 TTATTAAATTATAATTTAATATAA
1 TTATTAAATTATAATTTAATATAA
45050427 ATATAATTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
TTATTAAATTATAATTTAATATAA
Found at i:45050443 original size:25 final size:26
Alignment explanation
Indices: 45050415--45050463 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
45050405 ATTAAATTAT
45050415 AATTTAATATAAATATA-ATTTTAAC
1 AATTTAATATAAATATACATTTTAAC
* * *
45050440 AATTTATTTTATATATACATTTTA
1 AATTTAATATAAATATACATTTTA
45050464 TTTAATGTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (26 bp):
AATTTAATATAAATATACATTTTAAC
Found at i:45070271 original size:44 final size:44
Alignment explanation
Indices: 45070086--45070407 Score: 163
Period size: 44 Copynumber: 7.3 Consensus size: 44
45070076 CAGTAAGGAT
*
45070086 AGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
1 AGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
* * * ** * *
45070130 GGTAAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAGGCC
1 AGCAAATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCAAAGAC
* * * * * * * * * **
45070174 ACCAAACCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTAAAGGT
1 AGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
*
45070218 AGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
1 AGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
* * * ** *
45070262 GGTAAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCC
1 AGCAAATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCAAAGAC
* * ** * * * ** * * *
45070306 ACCGAGGCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTC-AAGAT
1 AGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCA-GATCAAAGAC
*
45070350 AGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
1 AGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
* *
45070394 GGTAAATCTTATCT
1 AGCAAATCTTATCT
45070408 TTCCAGGATA
Statistics
Matches: 189, Mismatches: 75, Indels: 28
0.65 0.26 0.10
Matches are distributed among these distances:
42 8 0.04
43 15 0.08
44 149 0.79
45 13 0.07
46 4 0.02
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (44 bp):
AGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
Found at i:45070475 original size:132 final size:132
Alignment explanation
Indices: 45070083--45070463 Score: 681
Period size: 132 Copynumber: 2.9 Consensus size: 132
45070073 GACCAGTAAG
45070083 GATAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCC
1 GATAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCC
* * *
45070148 AAGATAGTGGGAAGCAGATTTAGGCCACCAAACCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTA
66 AAGATAGTGGGAAGCAGATTTAAGCCACCGAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTA
45070213 AA
131 AA
*
45070215 GGTAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCC
1 GATAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCC
* * *
45070280 AAGATAGTGGGAAGCAGATTTAAGCCACCGAGGCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTC
66 AAGATAGTGGGAAGCAGATTTAAGCCACCGAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTA
45070345 AA
131 AA
45070347 GATAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCC
1 GATAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCC
* *
45070412 AGGATAGTGGGAAGCAGATTTAAGCCACCGAGCCTTGTCTCCCTAAGCAGCA
66 AAGATAGTGGGAAGCAGATTTAAGCCACCGAGCCTTGTCTCCCTGAGCAGCA
45070464 ATGGACTAGG
Statistics
Matches: 238, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 238 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (132 bp):
GATAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCC
AAGATAGTGGGAAGCAGATTTAAGCCACCGAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTA
AA
Found at i:45071133 original size:15 final size:14
Alignment explanation
Indices: 45071113--45071145 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
45071103 CAGAATCGGT
45071113 AAAAAAGAGAAAAAC
1 AAAAAA-AGAAAAAC
45071128 -AAAAAAGAAAAAC
1 AAAAAAAGAAAAAC
45071141 AAAAA
1 AAAAA
45071146 GAAATAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAAAAC
Found at i:45071144 original size:12 final size:13
Alignment explanation
Indices: 45071114--45071149 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
45071104 AGAATCGGTA
45071114 AAAAAGAGAAAAAC
1 AAAAA-AGAAAAAC
45071128 AAAAAAGAAAAAC
1 AAAAAAGAAAAAC
45071141 -AAAAAGAAA
1 AAAAAAGAAA
45071150 TAGAAATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 9 0.41
13 8 0.36
14 5 0.23
ACGTcount: A:0.83, C:0.06, G:0.11, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAC
Found at i:45075383 original size:24 final size:25
Alignment explanation
Indices: 45075296--45075383 Score: 81
Period size: 25 Copynumber: 3.6 Consensus size: 25
45075286 TTATCGATTC
* * * *
45075296 CAGCTCTTATGAGCTTACTGATACT
1 CAGCTCGTATGAGCTTACCGTTATT
* *
45075321 CAGCTCATATAAGCTTACCGTTATT
1 CAGCTCGTATGAGCTTACCGTTATT
* *
45075346 CAGCTCGGAGGAGCTTACCGTT-TAT
1 CAGCTCGTATGAGCTTACCGTTAT-T
45075371 -AGCTCGTATGAGC
1 CAGCTCGTATGAGC
45075384 ATAAATGTAT
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
24 12 0.24
25 39 0.76
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGTTATT
Found at i:45075568 original size:31 final size:31
Alignment explanation
Indices: 45075533--45075592 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
45075523 TATACATGAA
45075533 ATATATGGAAAT-GATGATACATGATATATTG
1 ATATATGGAAATGGATGATACATG-TATATTG
* * *
45075564 ATATATTGTAATGGATGATATATGTATAT
1 ATATATGGAAATGGATGATACATGTATAT
45075593 GATGAAACGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 15 0.60
32 10 0.40
ACGTcount: A:0.40, C:0.02, G:0.18, T:0.40
Consensus pattern (31 bp):
ATATATGGAAATGGATGATACATGTATATTG
Found at i:45090269 original size:40 final size:39
Alignment explanation
Indices: 45090179--45090362 Score: 142
Period size: 40 Copynumber: 4.6 Consensus size: 39
45090169 TCAAATGATG
* * * * *
45090179 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGAGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
45090219 TCCG-GACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGAG-CTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
45090259 TTCGGGCTAAG-CCGAAGGCATTGGTGCGAGTTATTAAA
1 TCCGAGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
45090297 TCCGAGTTAAGTCCCAAAGGCATTTGTGTGAGTTACTATAA
1 TCCGAGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
45090338 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGAGCTAAGT-CCGAAGGCATTTG
45090363 AATGAGTAGC
Statistics
Matches: 117, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
38 32 0.27
39 1 0.01
40 73 0.62
41 11 0.09
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGAGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45098324 original size:40 final size:39
Alignment explanation
Indices: 45098240--45098424 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
45098230 TCGAATGATG
* * * *
45098240 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
45098280 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
45098320 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
45098359 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
45098400 -ACGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
45098425 AATGAGTAGC
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45098376 original size:79 final size:81
Alignment explanation
Indices: 45098240--45098422 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
45098230 TCGAATGATG
* *
45098240 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
45098304 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
45098319 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
45098381 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
** *
45098399 AACGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
45098423 TGAATGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:45098446 original size:79 final size:79
Alignment explanation
Indices: 45098293--45098457 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
45098283 GGACTAAGAT
** **
45098293 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATAACGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
45098358 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
45098372 CCGAAGGCATTTGTGCGAGTTACT-ATAAACGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-AACGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
45098435 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
45098451 CCGAAGG
1 CCGAAGG
45098458 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATAACGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:45105602 original size:21 final size:21
Alignment explanation
Indices: 45105576--45105627 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
45105566 AGCGGTGGCA
*
45105576 GTGAGATTAGTTACTGTAGCG
1 GTGAGATTAGGTACTGTAGCG
*
45105597 GTGAGATTGGGTACTGTAGCG
1 GTGAGATTAGGTACTGTAGCG
45105618 GTGAGATTAG
1 GTGAGATTAG
45105628 AAACAATGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.23, C:0.08, G:0.38, T:0.31
Consensus pattern (21 bp):
GTGAGATTAGGTACTGTAGCG
Found at i:45105941 original size:22 final size:22
Alignment explanation
Indices: 45105890--45105941 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 22
45105880 TTTTATAGTT
45105890 ATAATTAAATATTTTTTATAACA
1 ATAA-TAAATATTTTTTATAACA
*
45105913 ATGATAAATATTATTTTCAT-A-A
1 ATAATAAATATT-TTTT-ATAACA
45105935 ATAATAA
1 ATAATAA
45105942 CATTATACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 15 0.60
23 8 0.32
24 2 0.08
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (22 bp):
ATAATAAATATTTTTTATAACA
Found at i:45113861 original size:9 final size:9
Alignment explanation
Indices: 45113847--45113880 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
45113837 GTTTTCGAAG
*
45113847 TCGAATAAC
1 TCGAATAAT
45113856 TCGAATAAT
1 TCGAATAAT
*
45113865 TCAAATAAT
1 TCGAATAAT
45113874 TCGAATA
1 TCGAATA
45113881 TCAAACTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (9 bp):
TCGAATAAT
Found at i:45114203 original size:16 final size:15
Alignment explanation
Indices: 45114184--45114236 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 15
45114174 CCTATTTACT
45114184 TTCCCTCAAACTTTTA
1 TTCCC-CAAACTTTTA
45114200 TTCCCCAAACTTTTTA
1 TTCCCCAAAC-TTTTA
45114216 TTTTCCCCCTAAACTTTTA
1 --TT-CCCC-AAACTTTTA
45114235 TT
1 TT
45114237 TCTCACCCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
15 5 0.16
16 10 0.31
17 2 0.06
18 2 0.06
19 9 0.28
20 4 0.12
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (15 bp):
TTCCCCAAACTTTTA
Found at i:45114231 original size:20 final size:18
Alignment explanation
Indices: 45114178--45114237 Score: 63
Period size: 19 Copynumber: 3.4 Consensus size: 18
45114168 ACTCCTCCTA
* *
45114178 TTTACTTTCCCTCAAACT
1 TTTATTTTCCCCCAAACT
45114196 TTTA--TT-CCCCAAACTT
1 TTTATTTTCCCCCAAAC-T
45114212 TTTATTTTCCCCCTAAACT
1 TTTATTTTCCCCC-AAACT
45114231 TTTATTT
1 TTTATTT
45114238 CTCACCCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
15 7 0.19
16 7 0.19
18 6 0.17
19 12 0.33
20 4 0.11
ACGTcount: A:0.22, C:0.28, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTATTTTCCCCCAAACT
Found at i:45114245 original size:20 final size:20
Alignment explanation
Indices: 45114206--45114245 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
45114196 TTTATTCCCC
*
45114206 AAACTTTTTATTTTCCCCCT
1 AAACTTTTTATTTTCACCCT
45114226 AAAC-TTTTATTTCTCACCCT
1 AAACTTTTTATTT-TCACCCT
45114246 TTACTGTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (20 bp):
AAACTTTTTATTTTCACCCT
Found at i:45114749 original size:5 final size:5
Alignment explanation
Indices: 45114739--45114795 Score: 71
Period size: 5 Copynumber: 11.2 Consensus size: 5
45114729 GAACAAATAT
* *
45114739 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG AATTCC ATCTC- ATTCG ACTCG
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG -ATTCG AT-TCG ATTCG ATTCG
45114790 ATTCG A
1 ATTCG A
45114796 GAAAACTTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
4 2 0.04
5 38 0.83
6 6 0.13
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (5 bp):
ATTCG
Found at i:45119300 original size:15 final size:15
Alignment explanation
Indices: 45119280--45119323 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
45119270 AAAATCGTCG
*
45119280 AATAAAATTGAAAAA
1 AATAAAATAGAAAAA
*
45119295 AATAAAA-AAATAAAA
1 AATAAAATAGA-AAAA
45119310 AATAAAATAGAAAA
1 AATAAAATAGAAAA
45119324 TCCCCCCTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 1 0.04
15 21 0.88
16 2 0.08
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.16
Consensus pattern (15 bp):
AATAAAATAGAAAAA
Found at i:45120088 original size:44 final size:44
Alignment explanation
Indices: 45120039--45120561 Score: 142
Period size: 44 Copynumber: 11.2 Consensus size: 44
45120029 TAACTTCAAA
*
45120039 GAGATAAGATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
1 GAGATAAGATACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
* * * * * **
45120083 GAGATAGGATTAC-TAGCTTCAATCTGCTCCGTTGTAATCTCAGG
1 GAGATAAGA-TACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
* * * * *
45120127 GAGATAAGAT--TTCTGGCTTCAATATGATGCGATTTACTCTACTGTAA-CTTTAGA
1 GAGATAAGATACTT-T-G-TT---T-TAATCCG-----CTCCACTGTAATC-TCAGG
* *
45120181 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGG
1 GAGATAAGATACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
* * * * * *
45120225 GAGATAGGATTAC-TAGCTTCAATCTGCT-TAGCTGTAATCTCAGG
1 GAGATAAGA-TACTTTGTTTTAATCCGCTCCA-CTGTAATCTCAGG
* * *
45120269 GAGATAAGAT--TTCTAGCTTCAATCTGGTGCGATCTACTCTACTGTAA-CTTCAGA
1 GAGATAAGATACTT-T-GTTTTAATC-----CG--CT-C-C-ACTGTAATC-TCAGG
*
45120323 GAGATAAGAT-CATTTATTTTAATCCGCTCCACTGTAATCTCAGG
1 GAGATAAGATAC-TTTGTTTTAATCCGCTCCACTGTAATCTCAGG
* * * * * *
45120367 GAGATAGGATTAC-TAGCTTCAATCTGCTCCGCTGTAATCTCAGG
1 GAGATAAGA-TACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
* * *
45120411 GAGATAAGAT--TTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAA-CTTCAGA
1 GAGATAAGATACTT-T-G-TT---T-TAATCCG--CT-C-C-ACTGTAATC-TCAGG
* *
45120465 GAGATAAGATCCTTTATTTTAAT-CGCTCCACTGTAATCTCAGG
1 GAGATAAGATACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
* * * * * * *
45120508 GAGATAGGATTAC-TAGCTTCAATCTGCTCCGCTGTAATCTTAGG
1 GAGATAAGA-TACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
45120552 GAGATAAGAT
1 GAGATAAGAT
45120562 TTCTGGCGTC
Statistics
Matches: 348, Mismatches: 72, Indels: 119
0.65 0.13 0.22
Matches are distributed among these distances:
42 3 0.01
43 30 0.09
44 185 0.53
45 11 0.03
46 4 0.01
47 2 0.01
48 4 0.01
49 17 0.05
50 2 0.01
51 4 0.01
52 1 0.00
53 8 0.02
54 67 0.19
55 4 0.01
56 6 0.02
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (44 bp):
GAGATAAGATACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
Found at i:45120165 original size:142 final size:142
Alignment explanation
Indices: 45120000--45120660 Score: 1162
Period size: 142 Copynumber: 4.7 Consensus size: 142
45119990 TGCTGTTGTA
* *
45120000 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTTTGTTTTAATCCG
1 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
*
45120065 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGTTGTAATCTCAGGGAG
66 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
45120130 ATAAGATTTCTG
131 ATAAGATTTCTG
* * *
45120142 GCTTCAATATGATGCGATTTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCG
1 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
**
45120207 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTTAGCTGTAATCTCAGGGAG
66 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
*
45120272 ATAAGATTTCTA
131 ATAAGATTTCTG
* *
45120284 GCTTCAATCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCG
1 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
45120349 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
66 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
45120414 ATAAGATTTCTG
131 ATAAGATTTCTG
45120426 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAAT-CG
1 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
*
45120490 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTTAGGGAG
66 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
45120555 ATAAGATTTCTG
131 ATAAGATTTCTG
* * *
45120567 GCGTCAATCTGATGCGATCTACTGTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCG
1 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
* *
45120632 CTCTACTGTAATCTCAAGGAGATAGGATT
66 CTCCACTGTAATCTCAGGGAGATAGGATT
45120661 TCTTCTATCT
Statistics
Matches: 493, Mismatches: 25, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
141 137 0.28
142 356 0.72
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (142 bp):
GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
ATAAGATTTCTG
Found at i:45120327 original size:98 final size:98
Alignment explanation
Indices: 45120211--45120392 Score: 226
Period size: 98 Copynumber: 1.9 Consensus size: 98
45120201 AATCCGCTCC
* * * * *
45120211 ACTGTAATCTCAGGGAGATAGGATTA-CTAGCTTCAATCTGCT-TAGCTGTAATCTCAGGGAGAT
1 ACTGTAATCTCAGAGAGATAAGATCATCTA-CTTCAATCCGCTCCA-CTGTAATCTCAGGGAGAT
*
45120274 AAGATTTCTAGCTTCAATCTGGTGCGATCTACTCT
64 AAGATTACTAGCTTCAATCTGGTGCGATCTACTCT
* * *
45120309 ACTGTAA-CTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATA
1 ACTGTAATC-TCAGAGAGATAAGATCATCTACTTCAATCCGCTCCACTGTAATCTCAGGGAGATA
*
45120373 GGATTACTAGCTTCAATCTG
65 AGATTACTAGCTTCAATCTG
45120393 CTCCGCTGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
97 1 0.01
98 67 0.94
99 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (98 bp):
ACTGTAATCTCAGAGAGATAAGATCATCTACTTCAATCCGCTCCACTGTAATCTCAGGGAGATAA
GATTACTAGCTTCAATCTGGTGCGATCTACTCT
Found at i:45120574 original size:44 final size:44
Alignment explanation
Indices: 45120485--45120577 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
45120475 CCTTTATTTT
* *
45120485 AATC-GCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCGTC
* * * *
45120528 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTTCTGGCGTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCGTC
45120572 AATCTG
1 AATCTG
45120578 ATGCGATCTA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 4 0.09
44 39 0.91
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCGTC
Found at i:45130709 original size:30 final size:30
Alignment explanation
Indices: 45130673--45130733 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
45130663 TGGTTTTTGG
* * *
45130673 GTTTAGGCTAGTTGGGTTTGGGTTAAAGCT
1 GTTTAGGCTAATCGGGTTTAGGTTAAAGCT
45130703 GTTTAGGCTAATCGGGTTTAGGTTAAAGCT
1 GTTTAGGCTAATCGGGTTTAGGTTAAAGCT
45130733 G
1 G
45130734 GTTTTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.20, C:0.08, G:0.34, T:0.38
Consensus pattern (30 bp):
GTTTAGGCTAATCGGGTTTAGGTTAAAGCT
Found at i:45133313 original size:18 final size:18
Alignment explanation
Indices: 45133292--45133328 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
45133282 TGATTTTTCG
*
45133292 AATTCAAATAACTCGAAT
1 AATTCAAATAAATCGAAT
*
45133310 AATTCGAATAAATCGAAT
1 AATTCAAATAAATCGAAT
45133328 A
1 A
45133329 TCAACTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.08, T:0.27
Consensus pattern (18 bp):
AATTCAAATAAATCGAAT
Found at i:45148381 original size:78 final size:81
Alignment explanation
Indices: 45148246--45148429 Score: 243
Period size: 78 Copynumber: 2.3 Consensus size: 81
45148236 TCGAATGATG
*
45148246 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
45148310 TGTGCGAGATACTAT-
66 TGTGCGAGATACTATA
* * * **
45148325 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
45148387 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
45148404 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45148430 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 50 0.54
79 27 0.29
80 14 0.15
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:45148391 original size:40 final size:40
Alignment explanation
Indices: 45148246--45148429 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
45148236 TCGAATGATG
* * * *
45148246 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
45148286 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
45148325 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45148364 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45148405 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45148430 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 23 0.18
39 21 0.17
40 71 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45148448 original size:80 final size:77
Alignment explanation
Indices: 45148299--45148462 Score: 213
Period size: 78 Copynumber: 2.1 Consensus size: 77
45148289 GGACTAAGAT
* **
45148299 CCGAAGGCATTTGTGCGAGATACTATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGATACTATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
45148364 TCCGGGTTAAGTC
66 TCC-GGTTAAATC
* *
45148377 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCGAGATACTAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CT
* *
45148441 ATATCCGGTTAAATT
63 AAATCCGGTTAAATC
45148456 CCGAAGG
1 CCGAAGG
45148463 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
78 25 0.33
79 25 0.33
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGTTAAATC
Found at i:45150093 original size:100 final size:100
Alignment explanation
Indices: 45149963--45150475 Score: 760
Period size: 100 Copynumber: 5.1 Consensus size: 100
45149953 GGTTGAAAAG
*
45149963 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAATAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAATAGATTGAAGC
*
45150028 TACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
66 TACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
* * * *
45150063 TAAAAAGATTAAAGCCACAACGGCAGATCTTACTTCCTTAGCAGTGCAGCGAAATAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAATAGATTGAAGC
*
45150128 TACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
66 TACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
*
45150163 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAATAGATTGAAGC
* * * *
45150228 TACGACGGTGGATCTGGTTTCCCGGATACTGTAAT
66 TACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
* * *
45150263 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAATAGATTGAAGC
* *
45150328 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
66 TACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
* * * * *
45150363 TAAAAAGATTGAAGCCACAACGGCAGATCTTACTTGCCTGA-CGGTGCGGTAGAATAGATTGAAG
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGCAGTGCAGTGGAATAGATTGAAG
* * * *
45150427 CTACGACGGCAGATCTGGTTTCCCCGACATTGCAGT
65 CTACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
45150463 TAAACAA-ATTGAA
1 TAAA-AAGATTGAA
45150476 AATTTCAGAT
Statistics
Matches: 380, Mismatches: 31, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
100 374 0.98
101 6 0.02
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (100 bp):
TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAATAGATTGAAGC
TACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
Found at i:45150403 original size:50 final size:49
Alignment explanation
Indices: 45149963--45150403 Score: 274
Period size: 50 Copynumber: 8.8 Consensus size: 49
45149953 GGTTGAAAAG
* * **
45149963 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTGA-TAGTGCAAT
** * * * * *** *
45150013 GGAATAGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTT-CCTGATAGTGCAAT
* * * * **
45150063 TAAAAAGATTAAAGCCACAACGGCAGATCTTACTTCCTTAGCAGTGCAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTGA-TAGTGCAAT
* * * * * *** *
45150113 GAAATAGATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTT-CCTGATAGTGCAAT
* * *
45150163 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGT
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTGA-TAGTGCAAT
** * * * * *** * * *
45150213 GGAACAGATTGAAGCTACGACGGTGGATCTGGTTTCCCGGATACTGTAAT
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTT-CCTGATAGTGCAAT
* * *
45150263 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTG-AAG
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTGA-TAGTGCAAT
* * * * ***
45150312 TAGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGATA-TAGCAAT
1 TA-AAAAGATTGAAGCCACAACGGCGGATCTTACTT-CCTGATAGT-GCAAT
*
45150363 TAAAAAGATTGAAGCCACAACGGCAGATCTTACTTGCCTGA
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTT-CCTGA
45150404 CGGTGCGGTA
Statistics
Matches: 278, Mismatches: 103, Indels: 20
0.69 0.26 0.05
Matches are distributed among these distances:
49 16 0.06
50 243 0.87
51 19 0.07
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (49 bp):
TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTGATAGTGCAAT
Done.