Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 153 of 230
Found at i:45150474 original size:50 final size:49
Alignment explanation
Indices: 45150020--45150475 Score: 213
Period size: 50 Copynumber: 9.1 Consensus size: 49
45150010 AGCGGAATAG
* * * *
45150020 ATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAA
1 ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACAGTGCAGTTAAAAA
* * * * *** * ** *
45150069 GATTAAAGCCACAACGGCAGATCTTACTT-CCTTAGCAGTGCAGCGAAATAG
1 -ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA-CAGTGCAGTTAAA-AA
* * * *
45150120 ATTGAAGCTACGACAGCGGATCTGGTTTCCCTGATATTGCAATTAAAAA
1 ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACAGTGCAGTTAAAAA
* * *** * * * *
45150169 GATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGCAGTGCAGTGGAACAG
1 -ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA-CAGTGCAGT-TAAAAA
* * * * * *
45150220 ATTGAAGCTACGACGGTGGATCTGGTTTCCCGGATACTGTAATTAAAAA
1 ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACAGTGCAGTTAAAAA
* * *** * * *
45150269 GATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGCAGTGAAG-TAGAACAG
1 -ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA-CAGTGCAGTTA-AA-AA
* * *
45150320 ATTGAAGCTACGACGGCAGATCTGGTTTCCCTGATA-TAGCAATTAAAAA
1 ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACAGT-GCAGTTAAAAA
* * * *** * * * *
45150369 GATTGAAGCCACAACGGCAGATCTTACTTGCCTGACGGTGC-GGTAGAATAG
1 -ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACAGTGCAGTTA-AA-AA
* * *
45150420 ATTGAAGCTACGACGGCAGATCTGGTTTCCCCGACATTGCAGTTAAACAA
1 ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACAGTGCAGTTAAA-AA
45150470 ATTGAA
1 ATTGAA
45150476 AATTTCAGAT
Statistics
Matches: 282, Mismatches: 105, Indels: 38
0.66 0.25 0.09
Matches are distributed among these distances:
49 21 0.07
50 238 0.84
51 23 0.08
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (49 bp):
ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACAGTGCAGTTAAAAA
Found at i:45150664 original size:44 final size:45
Alignment explanation
Indices: 45150601--45150698 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 45
45150591 CAGTGGAATC
** *
45150601 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTA
* * * *
45150645 GATCGAAGAAAGTATATCTTGTCTTCCCATACTGGTGGTGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTA
45150690 GATCGAAGA
1 GATCGAAGA
45150699 TATAAGTCTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 29 0.63
45 17 0.37
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (45 bp):
GATCGAAGAAAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTA
Found at i:45151787 original size:28 final size:27
Alignment explanation
Indices: 45151756--45151830 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 27
45151746 CATACATACG
*
45151756 TTTTATAATACATATACATTTTTTTTCA
1 TTTTATAATACATATACATTTTCTTT-A
*
45151784 TTTTATAATTC--ATACATTTTCTTTA
1 TTTTATAATACATATACATTTTCTTTA
* * *
45151809 TATTAT-ATACATACAGATTTTC
1 TTTTATAATACATATACATTTTC
45151831 ACACATATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
24 3 0.08
25 6 0.15
26 20 0.51
28 10 0.26
ACGTcount: A:0.32, C:0.12, G:0.01, T:0.55
Consensus pattern (27 bp):
TTTTATAATACATATACATTTTCTTTA
Found at i:45165671 original size:84 final size:85
Alignment explanation
Indices: 45165530--45165698 Score: 286
Period size: 84 Copynumber: 2.0 Consensus size: 85
45165520 TCACTTTTGG
* *
45165530 GACTAAATTAGAAATTTTGAATAGTACAATGATTAAATTGTAAAATTCCCATTTTTATCGAGAAA
1 GACTAAATTAGAAAATTTAAATAGTACAATGATTAAATTGTAAAATTCCCATTTTTATCGAGAAA
*
45165595 AGAGCCAAAG-GAGATTTTA
66 AGAGCAAAAGTGAGATTTTA
*
45165614 GACTAAATTAGAAAATTTAAATAGTACAATGATTAAATTGTAAAATTCCCATTTTTATCTAGAAA
1 GACTAAATTAGAAAATTTAAATAGTACAATGATTAAATTGTAAAATTCCCATTTTTATCGAGAAA
*
45165679 ATAGCAAAAGTGAGATTTTA
66 AGAGCAAAAGTGAGATTTTA
45165699 ATTACTCATA
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
84 70 0.89
85 9 0.11
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.33
Consensus pattern (85 bp):
GACTAAATTAGAAAATTTAAATAGTACAATGATTAAATTGTAAAATTCCCATTTTTATCGAGAAA
AGAGCAAAAGTGAGATTTTA
Found at i:45171306 original size:16 final size:16
Alignment explanation
Indices: 45171267--45171306 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
45171257 TCTTCAACTG
*
45171267 AAGAAAGAATATGCCT
1 AAGAAAGAATACGCCT
*
45171283 AATAAAGAATACGCCT
1 AAGAAAGAATACGCCT
*
45171299 AAGGAAGA
1 AAGAAAGA
45171307 GTATGCCCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.53, C:0.12, G:0.20, T:0.15
Consensus pattern (16 bp):
AAGAAAGAATACGCCT
Found at i:45172682 original size:25 final size:25
Alignment explanation
Indices: 45172639--45172692 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
45172629 TTGTAGCGAG
* **
45172639 TTATTTGTAAGGCTTTTATGAAAAA
1 TTATTTGTAAAGCCCTTATGAAAAA
**
45172664 TTATTTGTAAAGCCCTTATGGCAAA
1 TTATTTGTAAAGCCCTTATGAAAAA
45172689 TTAT
1 TTAT
45172693 CTAAAAGGCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (25 bp):
TTATTTGTAAAGCCCTTATGAAAAA
Found at i:45176067 original size:23 final size:22
Alignment explanation
Indices: 45176024--45176067 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
45176014 TTCTAAGTTG
45176024 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
45176047 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
45176068 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:45176176 original size:45 final size:45
Alignment explanation
Indices: 45176112--45176200 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
45176102 AACAGATACT
* *
45176112 CAGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CAGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
45176157 CAGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 CAGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
45176201 TCGGTTCACT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.25
Consensus pattern (45 bp):
CAGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:45176273 original size:51 final size:51
Alignment explanation
Indices: 45176211--45176347 Score: 168
Period size: 51 Copynumber: 2.7 Consensus size: 51
45176201 TCGGTTCACT
* * *
45176211 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCAATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATAACCATCCAATACACA
* * * ** *
45176262 TAGTAGTCTGCACATAGTACTACACACGTGATCGA-AACTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATAACCATCCAATACACA
*
45176313 TAGTAGCCTGCAGATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
45176348 CACTTTCAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
50 2 0.03
51 68 0.94
52 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATAACCATCCAATACACA
Found at i:45179880 original size:39 final size:39
Alignment explanation
Indices: 45179826--45179906 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
45179816 GAAAATAAGA
45179826 CGAATAACACGAGTAAGATTTTATAAAGCTTAGTAAGTT
1 CGAATAACACGAGTAAGATTTTATAAAGCTTAGTAAGTT
* *
45179865 CGAATAACACGAGTAAGCTTTTATAAATCTTAGTAAGTT
1 CGAATAACACGAGTAAGATTTTATAAAGCTTAGTAAGTT
45179904 CGA
1 CGA
45179907 TGATTAAAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (39 bp):
CGAATAACACGAGTAAGATTTTATAAAGCTTAGTAAGTT
Found at i:45182158 original size:41 final size:41
Alignment explanation
Indices: 45182004--45182151 Score: 226
Period size: 41 Copynumber: 3.6 Consensus size: 41
45181994 TAAGGCCCAA
* * *
45182004 ACTGATTCTGTGATGGGCTATGGCCCTACTGCATATTTGAA
1 ACTGATACTGTGATGGGCTAAGGCCCTACTGCATATTTGAT
* *
45182045 ATTGATTCTGTGATGGGCTAAGGCCCTACTGCATATTTGAT
1 ACTGATACTGTGATGGGCTAAGGCCCTACTGCATATTTGAT
*
45182086 ACTGATACTGTGATGGGCTACGGCCCTACTGCATATTTGAT
1 ACTGATACTGTGATGGGCTAAGGCCCTACTGCATATTTGAT
*
45182127 ACTG-TACTGAGATGGGCTAAGGCCC
1 ACTGATACTGTGATGGGCTAAGGCCC
45182152 AAACTGCTAC
Statistics
Matches: 99, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 19 0.19
41 80 0.81
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (41 bp):
ACTGATACTGTGATGGGCTAAGGCCCTACTGCATATTTGAT
Found at i:45182158 original size:82 final size:80
Alignment explanation
Indices: 45182004--45182170 Score: 228
Period size: 82 Copynumber: 2.1 Consensus size: 80
45181994 TAAGGCCCAA
* * * * *
45182004 ACTGATTCTGTGATGGGCTATGGCCCTACTGCATATTTGAAATTGATTCTGTGATGGGCTAAGGC
1 ACTGATACTGTGATGGGCTACGGCCCTACTGCATATTTGAAACTGATACTGAGATGGGCTAAGGC
* *
45182069 CCTACTGCATATTTGAT
66 CCAACTGC-TA-CTGAT
*
45182086 ACTGATACTGTGATGGGCTACGGCCCTACTGCATATTTGATACTG-TACTGAGATGGGCTAAGGC
1 ACTGATACTGTGATGGGCTACGGCCCTACTGCATATTTGAAACTGATACTGAGATGGGCTAAGGC
45182150 CCAAACTGCTACTGAT
66 CC-AACTGCTACTGAT
45182166 ACTGA
1 ACTGA
45182171 AATAGGGCTT
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 9 0.12
81 21 0.28
82 46 0.61
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (80 bp):
ACTGATACTGTGATGGGCTACGGCCCTACTGCATATTTGAAACTGATACTGAGATGGGCTAAGGC
CCAACTGCTACTGAT
Found at i:45187276 original size:22 final size:22
Alignment explanation
Indices: 45187232--45187276 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
45187222 TTAAGTGACT
* *
45187232 AAAATTGGTTTTTGGATGGTCG
1 AAAATAGGTTTTTGGATGCTCG
45187254 AAAATAGG-TTTTGGAGTGCTCG
1 AAAATAGGTTTTTGGA-TGCTCG
45187276 A
1 A
45187277 GGATCTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.27, C:0.07, G:0.31, T:0.36
Consensus pattern (22 bp):
AAAATAGGTTTTTGGATGCTCG
Found at i:45188559 original size:40 final size:41
Alignment explanation
Indices: 45188467--45188654 Score: 236
Period size: 41 Copynumber: 4.6 Consensus size: 41
45188457 TAAGGCCCAA
* * *
45188467 ACTGATTCTGTGATGGGCTAAGGCCCTACTGCATATTTGAA
1 ACTGATACTGTGATGGGCTAAGGCCCTACTACATATTTGAT
* **
45188508 ACTGATCCTGTGATGGGCTAAGGCCCTA-TGGATATTTGAT
1 ACTGATACTGTGATGGGCTAAGGCCCTACTACATATTTGAT
* * *
45188548 ACTGATACTGTGATAGGTTAAGGCCCTACTACAGATTTGAT
1 ACTGATACTGTGATGGGCTAAGGCCCTACTACATATTTGAT
* * *
45188589 ACTGATGCTATGATGGGCTAAGACCCTACTACATATTTGAT
1 ACTGATACTGTGATGGGCTAAGGCCCTACTACATATTTGAT
* *
45188630 ACT-ATACTGAGATGGGCAAAGGCCC
1 ACTGATACTGTGATGGGCTAAGGCCC
45188655 AAATTGTTAC
Statistics
Matches: 126, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
40 52 0.41
41 74 0.59
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (41 bp):
ACTGATACTGTGATGGGCTAAGGCCCTACTACATATTTGAT
Found at i:45188603 original size:81 final size:82
Alignment explanation
Indices: 45188467--45188654 Score: 236
Period size: 81 Copynumber: 2.3 Consensus size: 82
45188457 TAAGGCCCAA
* * * * * *
45188467 ACTGATTCTGTGATGGGCTAAGGCCCTACTGCATATTTGAAACTGATCCTGTGATGGGCTAAGGC
1 ACTGATACTGTGATAGGCTAAGGCCCTACTACAGATTTGAAACTGATCCTATGATGGGCTAAGAC
**
45188532 CCTA-TGGATATTTGAT
66 CCTACTACATATTTGAT
* * *
45188548 ACTGATACTGTGATAGGTTAAGGCCCTACTACAGATTTGATACTGATGCTATGATGGGCTAAGAC
1 ACTGATACTGTGATAGGCTAAGGCCCTACTACAGATTTGAAACTGATCCTATGATGGGCTAAGAC
45188613 CCTACTACATATTTGAT
66 CCTACTACATATTTGAT
* * *
45188630 ACT-ATACTGAGATGGGCAAAGGCCC
1 ACTGATACTGTGATAGGCTAAGGCCC
45188655 AAATTGTTAC
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 78 0.86
82 13 0.14
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (82 bp):
ACTGATACTGTGATAGGCTAAGGCCCTACTACAGATTTGAAACTGATCCTATGATGGGCTAAGAC
CCTACTACATATTTGAT
Found at i:45195033 original size:23 final size:22
Alignment explanation
Indices: 45195007--45195052 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
45194997 GAAATTAATT
45195007 TGAATTG-TGAACATGAGAAATGA
1 TGAATTGATGAA-ATG-GAAATGA
45195030 TGAATTGAATGAAATGGAAATGA
1 TGAATTG-ATGAAATGGAAATGA
45195053 ATCATTGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 14 0.67
24 3 0.14
25 4 0.19
ACGTcount: A:0.46, C:0.02, G:0.26, T:0.26
Consensus pattern (22 bp):
TGAATTGATGAAATGGAAATGA
Found at i:45196233 original size:23 final size:23
Alignment explanation
Indices: 45196206--45196339 Score: 152
Period size: 23 Copynumber: 6.0 Consensus size: 23
45196196 GCTATGCCGA
45196206 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
45196229 TCAGGCACTTTATGTGTCGTATAT
1 TCAGGCACTTTATGTGTCGTAT-T
* *
45196253 T-AGGCACTTTTTGTGTCATATT
1 TCAGGCACTTTATGTGTCGTATT
* *
45196275 TCAGGCACCTCATGTGTCGTATAT
1 TCAGGCACTTTATGTGTCGTAT-T
* **
45196299 T-AGGCACCTCGTGTGTCGTA--
1 TCAGGCACTTTATGTGTCGTATT
45196319 TCAGGCAC-TTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
45196340 ACTGATCAGG
Statistics
Matches: 97, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
20 11 0.11
21 6 0.06
22 2 0.02
23 74 0.76
24 4 0.04
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:45196261 original size:46 final size:45
Alignment explanation
Indices: 45196208--45196340 Score: 180
Period size: 46 Copynumber: 3.0 Consensus size: 45
45196198 TATGCCGATC
45196208 AGGCACTTTATGTGTCGTATTTCAGGCACTTTATGTGTCGTATATT
1 AGGCACTTTATGTGTCGTATTTCAGGCAC-TTATGTGTCGTATATT
* * *
45196254 AGGCACTTTTTGTGTCATATTTCAGGCACCTCATGTGTCGTATATT
1 AGGCACTTTATGTGTCGTATTTCAGGCA-CTTATGTGTCGTATATT
* **
45196300 AGGCACCTCGTGTGTCGTA--TCAGGCACTTATGTGTCGTATA
1 AGGCACTTTATGTGTCGTATTTCAGGCACTTATGTGTCGTATA
45196341 CTGATCAGGT
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
43 14 0.18
44 7 0.09
46 56 0.72
47 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.39
Consensus pattern (45 bp):
AGGCACTTTATGTGTCGTATTTCAGGCACTTATGTGTCGTATATT
Found at i:45199905 original size:23 final size:25
Alignment explanation
Indices: 45199869--45199918 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
45199859 AATTTGAATT
*
45199869 ATGAACATGAGAAATGATGAATTGA
1 ATGAACATGAGAAATGAAGAATTGA
*
45199894 ATGAA-ATG-GAAATGAAGCATTGA
1 ATGAACATGAGAAATGAAGAATTGA
45199917 AT
1 AT
45199919 TGTTAAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 15 0.65
24 3 0.13
25 5 0.22
ACGTcount: A:0.48, C:0.04, G:0.24, T:0.24
Consensus pattern (25 bp):
ATGAACATGAGAAATGAAGAATTGA
Found at i:45200991 original size:20 final size:21
Alignment explanation
Indices: 45200957--45200996 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
45200947 ATCAAGGATC
*
45200957 CCAATAGCTAGAAAC-TCCCT
1 CCAATAGCTACAAACGTCCCT
*
45200977 CCAATAGCTCCAAACGTCCC
1 CCAATAGCTACAAACGTCCC
45200997 AAAATCAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.33, C:0.40, G:0.10, T:0.17
Consensus pattern (21 bp):
CCAATAGCTACAAACGTCCCT
Found at i:45205722 original size:18 final size:18
Alignment explanation
Indices: 45205699--45205756 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 18
45205689 ATTTAAGCCA
45205699 ATTTAAAATTTAAAAATT
1 ATTTAAAATTTAAAAATT
45205717 ATTTAAAATTATAAAAAAGTT
1 ATTTAAAATT-T-AAAAA-TT
**
45205738 ATAAAAAATTT-AAAATT
1 ATTTAAAATTTAAAAATT
45205755 AT
1 AT
45205757 AAATTTTTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
17 4 0.11
18 14 0.40
19 1 0.03
20 6 0.17
21 10 0.29
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
ATTTAAAATTTAAAAATT
Found at i:45205739 original size:11 final size:10
Alignment explanation
Indices: 45205710--45205752 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
45205700 TTTAAAATTT
*
45205710 AAAAATTATT
1 AAAAATTATA
*
45205720 TAAAATTATA
1 AAAAATTATA
45205730 AAAAAGTTATA
1 AAAAA-TTATA
45205741 AAAAATT-TA
1 AAAAATTATA
45205750 AAA
1 AAA
45205753 TTATAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
9 5 0.17
10 14 0.48
11 10 0.34
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAAATTATA
Found at i:45205884 original size:11 final size:11
Alignment explanation
Indices: 45205862--45205905 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
45205852 TATTTTATAA
45205862 TTTTA-AAA-T
1 TTTTAGAAATT
*
45205871 TTTTATAAATT
1 TTTTAGAAATT
*
45205882 TTTTAGAATTT
1 TTTTAGAAATT
45205893 TTTTAGAAATT
1 TTTTAGAAATT
45205904 TT
1 TT
45205906 ATGACTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
9 5 0.17
10 3 0.10
11 22 0.73
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (11 bp):
TTTTAGAAATT
Found at i:45236407 original size:17 final size:17
Alignment explanation
Indices: 45236385--45236419 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
45236375 GAGTATAGTA
45236385 AAATATTAAAAAAAAAG
1 AAATATTAAAAAAAAAG
* *
45236402 AAATATTCAGAAAAAAG
1 AAATATTAAAAAAAAAG
45236419 A
1 A
45236420 GAGACACATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.17
Consensus pattern (17 bp):
AAATATTAAAAAAAAAG
Found at i:45238778 original size:12 final size:12
Alignment explanation
Indices: 45238763--45238804 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
45238753 GAACATAGAG
*
45238763 ATAATGATAGTA
1 ATAATGATAATA
45238775 ATAATGATAATA
1 ATAATGATAATA
45238787 TATAAT-ATAATA
1 -ATAATGATAATA
45238799 ATAATG
1 ATAATG
45238805 TTTTTTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 5 0.19
12 17 0.63
13 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.36
Consensus pattern (12 bp):
ATAATGATAATA
Found at i:45240428 original size:132 final size:132
Alignment explanation
Indices: 45240280--45241699 Score: 1801
Period size: 132 Copynumber: 10.8 Consensus size: 132
45240270 AGATCTGCTT
* * * * * *
45240280 TCTTCAATCGATTCCACTACTGACCAGGGAGATAGAATTACTGGCTCCAATATACTCCGCTGCAA
1 TCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
*
45240345 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA
45240410 AA
131 AA
* *
45240412 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * * ** * *
45240477 CCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGTTTAGGGAGGCAATATATGA
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA
45240542 AA
131 AA
* *
45240544 TCTTCAATCTATTCCACTGCTGCCCAGGGA-AGTAGAATTATTGGCTTCAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGCTGACCAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTA
** *
45240608 ACCTCAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
65 ACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
45240673 ---
130 AAA
* * *
45240673 TCTTCAATCTATTCCACTGCTGCCCAAGGA-AGTAGAATTACTGGCTTCAATGTACTCCACTGCA
1 TCTTCAATCTATTCCACTGCTGACCAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTA
**
45240737 ACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
65 ACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
*
45240802 TAA
130 AAA
* * *
45240805 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAA
1 TCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
** * * *
45240870 CCTCAGGGAGGTAAAATCCACCATATTTGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA
45240935 AA
131 AA
* * * *
45240937 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCACTGCAA
1 TCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
** *
45241002 CCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA
45241067 AA
131 AA
*
45241069 TCTTCAATCTATTCCACTGTTG-CCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGCTGACC-AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
* * *
45241133 ACCACAGGGAGGTAAAATCTGCCATCTCTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTG
65 ACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
45241198 AAA
130 AAA
** *
45241201 TCTTCAATCTATTCTGCTGCT-ACCCAGGGA-AGTAGAATTATTGGCTTCAATGTACTCCACTGT
1 TCTTCAATCTATTCCACTGCTGA-CCAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGT
* * * *
45241264 AACCAT-AGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTA-TGC--A-GGA-ATGC
64 AACC-TCAGGGAGGTAAAATCTGCCATCTTTGATCTGC-TC-C--ACTACTGCTTAGGGAGAT--
*
45241323 AAGATCTAAAA
122 AAGATCTGAAA
* * *
45241334 TTTTCAGTCTATTCCACTGCT-ACACATGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGCTGAC-CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
* * * * * * *
45241398 ACCACAGGGAGGTAAAATTTGCCGTCTTCGATCTACTTCGCTA-T--TTATGCAGGA-ATGCAAG
65 ACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTA-G--GGAGAT--AAG
*
45241459 ATCTAAAA
125 ATCTGAAA
*
45241467 TCTTCAGTCTATTCCACTGCT-ACCGAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGCTGACC-AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
* * *
45241531 ACCAT-AGGGAGGTAAAAT-TCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATA
65 ACC-TCAGGGAGGTAAAATCT-GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
45241594 TGAAA
128 TGAAA
*
45241599 TCTTCAATCTATTCCACTACT-ACCCAGGGA-AGTAGAATTACTGGCTTCAATGTACTCCACTGT
1 TCTTCAATCTATTCCACTGCTGA-CCAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGT
* *
45241662 AACCACAGGGAGGTAAAAT-TCGCCATCTTTAATCTGCT
64 AACCTCAGGGAGGTAAAATCT-GCCATCTTTGATCTGCT
45241700 TCGTTGTCTA
Statistics
Matches: 1167, Mismatches: 86, Indels: 70
0.88 0.07 0.05
Matches are distributed among these distances:
129 130 0.11
131 7 0.01
132 799 0.68
133 217 0.19
134 4 0.00
135 4 0.00
136 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
TCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA
AA
Found at i:45240603 original size:43 final size:43
Alignment explanation
Indices: 45240545--45240867 Score: 133
Period size: 43 Copynumber: 7.4 Consensus size: 43
45240535 TATATGAAAT
* *
45240545 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTATTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
* * * * * ***
45240588 CTTCAATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCACCAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAAGTAGAAT-TACTGG
* * * ** *
45240633 CTTCGATCTGCTCCACTACTGCTTAGGG-AGATA-AGA-T-CTGT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAG-TAGA-ATTACTGG
* *
45240674 CTTCAATCTATTCCACTGCTGCCCAAGGAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
* ** * * * ***
45240717 CTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCAT
1 CTTCAATCTACTCCACTGCTGCC-CAGGGAAGTAGAAT-TACTGG
** * * ** * *
45240762 CTTTGATCTGCTCCACTACTGCTTAGGG-AGATAAGATCTGTAAT--
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAG-T-AGA-AT-TACTGG
* *
45240806 CTTCAATCTATTCCACTGTTGCCCAGGG-AGATAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAG-TAGAATTACTGG
*
45240849 CTTCAATGTACTCCACTGC
1 CTTCAATCTACTCCACTGC
45240868 AACCTCAGGG
Statistics
Matches: 194, Mismatches: 69, Indels: 34
0.65 0.23 0.11
Matches are distributed among these distances:
41 29 0.15
42 6 0.03
43 62 0.32
44 59 0.30
45 35 0.18
46 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
Found at i:45240834 original size:44 final size:44
Alignment explanation
Indices: 45240374--45241230 Score: 193
Period size: 44 Copynumber: 19.5 Consensus size: 44
45240364 GCCATCTTTG
* * **
45240374 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * * *
45240418 ATCTATTCCACTGTTGCCCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** **
45240461 ATGTACTCCACTG-TAACCACAGGGAGGTAAAATCCGCCATCTTTG
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGATCTGTAATCTTCA
* * *** ** * * *
45240506 ATCTGCTCCACTACTGTTTAGGGAGGCAATATATGAAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * *
45240550 ATCTATTCCACTGCTGCCCAGGGA-AGT-AGA-AT-TATTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGA-TAAGATCTGTAAT--CTTCA
* * * * **** *
45240593 ATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCACCATCTTCG
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGATCTGTAATCTTCA
* * **
45240638 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG---TCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * * *
45240679 ATCTATTCCACTGCTGCCCAAGGA-AGT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGA-TAAGATCTGTAAT--CTTCA
* ** * * **** **
45240722 ATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTTG
1 ATCTACTCCACTGCTGCC-CAGGGAGATAAGATCTGTAATCTTCA
* * **
45240767 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * * *
45240811 ATCTATTCCACTGTTGCCCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAAT--CTTCA
* ** * * **** * **
45240854 ATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATATTTG
1 ATCTACTCCACTGCTGCC-CAGGGAGATAAGATCTGTAATCTTCA
* * * **
45240899 ATTTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * * *
45240943 ATCTATTCCACTGTTGCCCAGGGAGAT-AGAAC--TACTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAAT--CTTCA
* ** * * **** **
45240986 ATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTTG
1 ATCTACTCCACTGCTGCC-CAGGGAGATAAGATCTGTAATCTTCA
* * **
45241031 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * * * *
45241075 ATCTATTCCACTGTTGCCTAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * ** *
45241118 ATGTACTCCACTG-TAACCACAGGGAGGTAAAATCTGCCATC-TCTG
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGATCTGTAATCTTC-A
* * ** * *
45241163 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* ** *
45241207 ATCTATTCTGCTGCTACCCAGGGA
1 ATCTACTCCACTGCTGCCCAGGGA
45241231 AGTAGAATTA
Statistics
Matches: 544, Mismatches: 218, Indels: 102
0.63 0.25 0.12
Matches are distributed among these distances:
39 1 0.00
40 4 0.01
41 39 0.07
42 8 0.01
43 124 0.23
44 259 0.48
45 99 0.18
46 4 0.01
47 6 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (44 bp):
ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
Found at i:45241006 original size:393 final size:393
Alignment explanation
Indices: 45240280--45241699 Score: 1882
Period size: 393 Copynumber: 3.6 Consensus size: 393
45240270 AGATCTGCTT
* * * * *
45240280 TCTTCAATCGATTCCACTACTGACCAGGGAGATAGAATTACTGGCTCCAATATACTCCGCTGCAA
1 TCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAA
** * *
45240345 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGA
* *
45240410 AATCTTCAATCTATTCCACTGTTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTG
131 AATCTTCAATCTATTCCACTGCTACCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTG
* ** * *
45240474 TAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGTTTAGGGAGGCAATATA
195 TAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
*
45240539 TGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA-AGTAGAATTATTGGCTTCAATGTACTCCA
260 TGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCA
45240603 CTGTAACCTCAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
324 CTGTAACCTCAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
45240668 ATCTG
389 ATCTG
* *
45240673 TCTTCAATCTATTCCACTGCTGCCCAAGGA-AGTAGAATTACTGGCTTCAATGTACTCCACTGCA
1 TCTTCAATCTATTCCACTGCTGACCAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGCA
*
45240737 ACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
65 ACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTG
* * *
45240802 TAATCTTCAATCTATTCCACTGTTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACT
130 AAATCTTCAATCTATTCCACTGCTACCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACT
* * * * *
45240866 GCAACCTCAGGGAGGTAAAATCCACCATATTTGATTTGCTCCACTACTGCTTAGGGAGATAAGAT
194 GTAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
* * *
45240931 CTGTAATCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCA
259 CTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCA
* *
45240996 CTGCAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAG
324 CTGTAACCTCAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
45241061 ATCTG
389 ATCTG
*
45241066 TAATCTTCAATCTATTCCACTGTTG-CCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACT
1 ---TCTTCAATCTATTCCACTGCTGACC-AGGGAGATAGAATTACTGGCTTCAATGTACTCCACT
* * ** *
45241130 GTAACCACAGGGAGGTAAAATCTGCCATCTCTGATCTGCTCCACTACTGCTTAGGGAGACAAGAT
62 GCAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGAT
** *
45241195 CTGAAATCTTCAATCTATTCTGCTGCTACCCAGGGAAGTAGAATTATTGGCTTCAATGTACTCCA
127 CTGAAATCTTCAATCTATTCCACTGCTACCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCA
* * * * * *
45241260 CTGTAACCATAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTA-TGC--A-GGA-A
192 CTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGC-TC-C--ACTACTGCTTAGGGAGA
* * * * * *
45241320 TGCAAGATCTAAAATTTTCAGTCTATTCCACTGCTACACATGGAGATAGAATTACTGGCTTCAAT
253 T--AAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAAT
* *** * * * *
45241385 GTACTCCACTGTAACCACAGGGAGGTAAAATTTGCCGTCTTCGATCTACTTCGCTA-T--TTATG
316 GTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTA-G
*
45241447 CAGGA-ATGCAAGATCTAAAA
380 --GGAGAT--AAGATCT---G
* *
45241467 TCTTCAGTCTATTCCACTGCT-ACCGAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGCTGACC-AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCA
* *
45241531 ACCAT-AGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATAT
65 ACC-TCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCT
*
45241595 GAAATCTTCAATCTATTCCACTACTACCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACT
129 GAAATCTTCAATCTATTCCACTGCTACCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACT
* *
45241660 GTAACCACAGGGAGGTAAAATTCGCCATCTTTAATCTGCT
194 GTAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCT
45241700 TCGTTGTCTA
Statistics
Matches: 913, Mismatches: 90, Indels: 44
0.87 0.09 0.04
Matches are distributed among these distances:
392 1 0.00
393 364 0.40
394 4 0.00
395 5 0.01
396 206 0.23
397 109 0.12
398 218 0.24
399 3 0.00
400 3 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (393 bp):
TCTTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAA
CCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGA
AATCTTCAATCTATTCCACTGCTACCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
AACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
GAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACT
GTAACCTCAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
CTG
Found at i:45246672 original size:16 final size:16
Alignment explanation
Indices: 45246651--45246681 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45246641 TTCTATAATG
45246651 AAATGCCATGCAGTCT
1 AAATGCCATGCAGTCT
*
45246667 AAATGCTATGCAGTC
1 AAATGCCATGCAGTC
45246682 AAAGTGAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (16 bp):
AAATGCCATGCAGTCT
Found at i:45248649 original size:12 final size:12
Alignment explanation
Indices: 45248634--45248675 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
45248624 GAACATAGAG
*
45248634 ATAATGATAGTA
1 ATAATGATAATA
45248646 ATAATGATAATA
1 ATAATGATAATA
45248658 TATAAT-ATAATA
1 -ATAATGATAATA
45248670 ATAATG
1 ATAATG
45248676 TTTTTTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 5 0.19
12 17 0.63
13 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.36
Consensus pattern (12 bp):
ATAATGATAATA
Found at i:45249244 original size:10 final size:11
Alignment explanation
Indices: 45249224--45249275 Score: 56
Period size: 10 Copynumber: 5.0 Consensus size: 11
45249214 TTATTTTAAG
45249224 CAAAA-TAAAA
1 CAAAAGTAAAA
*
45249234 AAAAAGTAAAA
1 CAAAAGTAAAA
*
45249245 GAAAA-TAAAA
1 CAAAAGTAAAA
*
45249255 CAAAAGCAAAA
1 CAAAAGTAAAA
45249266 -AAAAGTAAAA
1 CAAAAGTAAAA
45249276 GATCACCTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
10 22 0.63
11 13 0.37
ACGTcount: A:0.79, C:0.06, G:0.08, T:0.08
Consensus pattern (11 bp):
CAAAAGTAAAA
Found at i:45249251 original size:21 final size:20
Alignment explanation
Indices: 45249225--45249275 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
45249215 TATTTTAAGC
*
45249225 AAAATAAAAAAAAAGTAAAA
1 AAAATAAAAAAAAAGCAAAA
*
45249245 GAAAATAAAACAAAAGCAAAA
1 -AAAATAAAAAAAAAGCAAAA
45249266 AAAAGTAAAA
1 AAAA-TAAAA
45249276 GATCACCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.80, C:0.04, G:0.08, T:0.08
Consensus pattern (20 bp):
AAAATAAAAAAAAAGCAAAA
Found at i:45255030 original size:96 final size:96
Alignment explanation
Indices: 45254920--45255112 Score: 377
Period size: 96 Copynumber: 2.0 Consensus size: 96
45254910 CAAACAAGAC
45254920 TTAAAGCATATTCAAACTTTTTATTTTAGTCTATTTTATAATTAATAAAATTTTATTATATGTTT
1 TTAAAGCATATTCAAACTTTTTATTTTAGTCTATTTTATAATTAATAAAATTTTATTATATGTTT
45254985 GGCTTTATTCCCTAGTCCTCATCAAATTTGT
66 GGCTTTATTCCCTAGTCCTCATCAAATTTGT
*
45255016 TTAAAGCATATTCAAACTTTTTATTTTAGTCTATTTTATAATTAATAAAATTTTATTCTATGTTT
1 TTAAAGCATATTCAAACTTTTTATTTTAGTCTATTTTATAATTAATAAAATTTTATTATATGTTT
45255081 GGCTTTATTCCCTAGTCCTCATCAAATTTGT
66 GGCTTTATTCCCTAGTCCTCATCAAATTTGT
45255112 T
1 T
45255113 GAGCGCAACG
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 96 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (96 bp):
TTAAAGCATATTCAAACTTTTTATTTTAGTCTATTTTATAATTAATAAAATTTTATTATATGTTT
GGCTTTATTCCCTAGTCCTCATCAAATTTGT
Found at i:45255588 original size:19 final size:19
Alignment explanation
Indices: 45255559--45255608 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
45255549 ATTCATTTAT
* *
45255559 TTATATATTTTTTAAT-TT
1 TTATGTATTTTTTAATGTC
*
45255577 TGTATGTATTTTATAATGTC
1 T-TATGTATTTTTTAATGTC
45255597 TTATGTATTTTT
1 TTATGTATTTTT
45255609 ATAGAAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 1 0.04
19 23 0.88
20 2 0.08
ACGTcount: A:0.24, C:0.02, G:0.08, T:0.66
Consensus pattern (19 bp):
TTATGTATTTTTTAATGTC
Found at i:45255743 original size:22 final size:22
Alignment explanation
Indices: 45255713--45255755 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
45255703 ACATCAAAAA
* *
45255713 AGGCTTTTAGCGGCGTTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
45255735 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
45255756 AACGCCGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.19, G:0.28, T:0.44
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:45256447 original size:8 final size:8
Alignment explanation
Indices: 45256434--45256461 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
45256424 TCCTAAATCT
45256434 AAAGATTC
1 AAAGATTC
45256442 AAAGATTC
1 AAAGATTC
45256450 AAAGATTC
1 AAAGATTC
45256458 AAAG
1 AAAG
45256462 TTAACATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.54, C:0.11, G:0.14, T:0.21
Consensus pattern (8 bp):
AAAGATTC
Found at i:45257875 original size:194 final size:194
Alignment explanation
Indices: 45257461--45257906 Score: 538
Period size: 194 Copynumber: 2.3 Consensus size: 194
45257451 CGACAAACAG
* * * *
45257461 ATTCCCGTTCTTAAAAGTCGTTTTTCTTCGACTCTTGAAAAACTCAAAAGCAATATATAGCAACA
1 ATTCCCGTTCTT-AAAGACGTTTCTCTTCGACTTTTGAAAAACTCAAAAGCAATATACAGCAACA
*
45257526 AACAACATATATCAACAATCATAAACACAAATCCAGCAGAAACATTAAGGAATCAAGATTTCATA
65 AACAACATATATCAACAATCATAAACACAAATCCAGCAGAAACAGTAAGGAATCAAGATTTCATA
* * * * ** * * * *
45257591 GCTTCGGATATGTCATAAGATGGGGTTTTGTTGAGAAGAAATTCGGATAGTTAAACAACACCTGA
130 ACGTCAGAAATGTCATAAGATGGGGTTTTGTCAAGAAGAAATTCAGACAGTTAAACAAAACCCGA
* * * *
45257656 ATTCCCATTCTTAAAAATGTTTCTCTTCGACTTTTGTAAAACTCAAAAGCAATATACAGCAACAA
1 ATTCCCGTTCTTAAAGACGTTTCTCTTCGACTTTTGAAAAACTCAAAAGCAATATACAGCAACAA
* * * * * *
45257721 ACAGCATATATCGACAATCATAAACACAAATTCAGTAGAATCAGTAAGGAATCAAGATTTTATAA
66 ACAACATATATCAACAATCATAAACACAAATCCAGCAGAAACAGTAAGGAATCAAGATTTCATAA
** * *
45257786 CGTCAGAAATGTTGTAA-ACT-GGGTTTTGTCAAGAAGCAATTCAGACAGTTAAACAAAACCCGT
131 CGTCAGAAATGTCATAAGA-TGGGGTTTTGTCAAGAAGAAATTCAGACAGTTAAACAAAACCCGA
* * * * *
45257849 ATTCCCGTTTTTCAAAGACATTTCTCTTTGATTTTTGAAAAACTC-AAAGTAATATACA
1 ATTCCCGTTCTT-AAAGACGTTTCTCTTCGACTTTTGAAAAACTCAAAAGCAATATACA
45257907 ACAATATTTC
Statistics
Matches: 211, Mismatches: 38, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
193 58 0.27
194 142 0.67
195 11 0.05
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (194 bp):
ATTCCCGTTCTTAAAGACGTTTCTCTTCGACTTTTGAAAAACTCAAAAGCAATATACAGCAACAA
ACAACATATATCAACAATCATAAACACAAATCCAGCAGAAACAGTAAGGAATCAAGATTTCATAA
CGTCAGAAATGTCATAAGATGGGGTTTTGTCAAGAAGAAATTCAGACAGTTAAACAAAACCCGA
Found at i:45259208 original size:16 final size:16
Alignment explanation
Indices: 45259183--45259220 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
45259173 AACAAATTTG
*
45259183 AAATTTTACCTTATGC
1 AAATTCTACCTTATGC
45259199 AAATTCTACCTTATGC
1 AAATTCTACCTTATGC
45259215 AAATTC
1 AAATTC
45259221 CCAGCAGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.39
Consensus pattern (16 bp):
AAATTCTACCTTATGC
Found at i:45261449 original size:22 final size:23
Alignment explanation
Indices: 45261424--45261473 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
45261414 ACTGTTGAAA
45261424 CCCTAAACCCTAAAT-CACTAAC
1 CCCTAAACCCTAAATCCACTAAC
* *
45261446 CCCTAACCCCTAAATCCCCTAAC
1 CCCTAAACCCTAAATCCACTAAC
45261469 CCCTA
1 CCCTA
45261474 GATCTCCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 14 0.56
23 11 0.44
ACGTcount: A:0.34, C:0.48, G:0.00, T:0.18
Consensus pattern (23 bp):
CCCTAAACCCTAAATCCACTAAC
Found at i:45261466 original size:9 final size:8
Alignment explanation
Indices: 45261424--45261507 Score: 63
Period size: 7 Copynumber: 10.9 Consensus size: 8
45261414 ACTGTTGAAA
45261424 CCCTAAA-
1 CCCTAAAC
*
45261431 CCCTAAAT
1 CCCTAAAC
*
45261439 CACT-AAC
1 CCCTAAAC
45261446 CCCT-AAC
1 CCCTAAAC
45261453 CCCTAAATC
1 CCCTAAA-C
45261462 CCCT-AAC
1 CCCTAAAC
*
45261469 CCCTAGATC
1 CCCTA-AAC
*
45261478 TCCT-AAC
1 CCCTAAAC
45261485 CCCTAAATC
1 CCCTAAA-C
45261494 CCCT-AAC
1 CCCTAAAC
45261501 CCCTAAA
1 CCCTAAA
45261508 GCATAACACT
Statistics
Matches: 62, Mismatches: 7, Indels: 15
0.74 0.08 0.18
Matches are distributed among these distances:
7 34 0.55
8 13 0.21
9 15 0.24
ACGTcount: A:0.33, C:0.46, G:0.01, T:0.19
Consensus pattern (8 bp):
CCCTAAAC
Found at i:45261466 original size:16 final size:16
Alignment explanation
Indices: 45261445--45261507 Score: 108
Period size: 16 Copynumber: 3.9 Consensus size: 16
45261435 AAATCACTAA
45261445 CCCCTAACCCCTAAAT
1 CCCCTAACCCCTAAAT
*
45261461 CCCCTAACCCCTAGAT
1 CCCCTAACCCCTAAAT
*
45261477 CTCCTAACCCCTAAAT
1 CCCCTAACCCCTAAAT
45261493 CCCCTAACCCCTAAA
1 CCCCTAACCCCTAAA
45261508 GCATAACACT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.30, C:0.49, G:0.02, T:0.19
Consensus pattern (16 bp):
CCCCTAACCCCTAAAT
Found at i:45261904 original size:74 final size:73
Alignment explanation
Indices: 45261783--45261944 Score: 252
Period size: 74 Copynumber: 2.2 Consensus size: 73
45261773 GCGCTTTCTT
* * * *
45261783 AAAAACGTCGCTAAATCCTCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTTGTGG
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGCCGTTGGGCTTAG-TTTTTTTTGAGG
45261848 CACTATCCC
65 CACTATCCC
*
45261857 AAAAATGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGCCGTTGGGCTTAGTTTTTTTTGAGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGCCGTTGGGCTTAGTTTTTTTTGAGGC
* *
45261922 GCTTTCCC
66 ACTATCCC
45261930 AAAAACGCCGCTAAA
1 AAAAACGCCGCTAAA
45261945 GCCATGAACA
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
73 32 0.40
74 48 0.60
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (73 bp):
AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGCCGTTGGGCTTAGTTTTTTTTGAGGC
ACTATCCC
Found at i:45262378 original size:115 final size:114
Alignment explanation
Indices: 45261857--45262506 Score: 861
Period size: 114 Copynumber: 5.8 Consensus size: 114
45261847 GCACTATCCC
* * *
45261857 AAAAATGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGCCGTTGGGCTTAGTTTTTTTTGAGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTGCGGC
* * * *
45261922 GCTTTCCCAAAAACGCCGCTAAAGCCATGAACATTAGCGGCGCTTTCTT
66 GCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATA
* *
45261971 AAAAATGCCGCTAAATCCCTGAAAGCTCAGAAAACGGCGCCGTTGGG--T--TTTTTTTTGCGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTGCGGC
45262032 GCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATA
66 GCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATA
* * * * * *
45262081 AAAAACCCCGCTAAATCCTCGAAAGCTCAGAAAATGGCGTCGTTTGGTTTAG--TTTTTTGCGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTGCGGC
* * *
45262144 ACTTTACCAAAAACGCCGCTAAAGCCCTGAACATTAGCGGCGCTTTCAT-
66 GCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTT-ATA
* * * * *
45262193 AAAAATGCCGCTAAATCCCCAAAAGCTCAGAAAATGACGCCGTTAGGG-TTATTTTTTTTTGCGG
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTT-GGGCTTAGTTTTTTTTGCGG
45262257 CGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATAA
65 CGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTAT-A
* *
45262308 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCACTGTTGGGCTTAGTTTTTTTTGCGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTGCGGC
* * *
45262373 GCTTTCCCAAAAATGCTGCTAAAGCCCTGAGCATTAGTGGCGCTTTATA
66 GCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATA
* * * * * * *
45262422 AAAAACACTGCTAAATCTCCGAAAGCTCGGTAAACGGCGTCGTTGGGCTTAG--GTTTTTGCGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTGCGGC
** *
45262485 GCTTTCCGGAAAACACCGCTAA
66 GCTTTCCCAAAAACGCCGCTAA
45262507 TTCTTATTTT
Statistics
Matches: 473, Mismatches: 52, Indels: 24
0.86 0.09 0.04
Matches are distributed among these distances:
110 97 0.21
112 124 0.26
113 6 0.01
114 147 0.31
115 99 0.21
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (114 bp):
AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGCCGTTGGGCTTAGTTTTTTTTGCGGC
GCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATA
Found at i:45263079 original size:44 final size:42
Alignment explanation
Indices: 45263023--45263105 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 42
45263013 GCCACATGTT
45263023 AAAAATTTAAATTTA-AAAAATATAAAAATCCAAAAAAAACTC
1 AAAAATTTAAATTTATAAAAATATAAAAA-CCAAAAAAAACTC
** *
45263065 AAAAATATTAAAATTTATAAATTTATAAAAACTAAAAAAAA
1 AAAAAT-TT-AAATTTATAAAAATATAAAAACCAAAAAAAA
45263106 TCATAATCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 6 0.17
43 2 0.06
44 16 0.46
45 11 0.31
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (42 bp):
AAAAATTTAAATTTATAAAAATATAAAAACCAAAAAAAACTC
Found at i:45264752 original size:125 final size:124
Alignment explanation
Indices: 45264444--45264793 Score: 587
Period size: 123 Copynumber: 2.8 Consensus size: 124
45264434 TTATTTCGAG
45264444 TTGACGTTTT-TGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
1 TTGACGTTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
* * * * **
45264508 GAAATCGCGCCATTGTGGATGCGATTTTGCTACGGTAGGTCATGTAAGAAATAATTTTT
66 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATAAAAGAAATAATTTTT
*
45264567 TTGACG-TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGC
1 TTGACGTTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
* *
45264631 GAAATCGTGCCCTCGTGGACGCGATTTTGCTACAGTTGGTCATAAAAGAAATAATTTTTT
66 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATAAAAGAAATAA-TTTTT
*
45264691 TTGACGTTTTCTGAGCAAATAGTATAAAATCACTTCTACCAGGATGCTATTTGAGAAGAAATTGT
1 TTGACGTTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
45264756 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
45264794 CAAGTTTGGG
Statistics
Matches: 211, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
122 3 0.01
123 105 0.50
124 11 0.05
125 92 0.44
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (124 bp):
TTGACGTTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATAAAAGAAATAATTTTT
Found at i:45267920 original size:10 final size:10
Alignment explanation
Indices: 45267905--45267929 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
45267895 CAAATCTAAC
45267905 ATTATGTAAA
1 ATTATGTAAA
45267915 ATTATGTAAA
1 ATTATGTAAA
45267925 ATTAT
1 ATTAT
45267930 TAAGTCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:45267972 original size:55 final size:55
Alignment explanation
Indices: 45267913--45268093 Score: 353
Period size: 55 Copynumber: 3.3 Consensus size: 55
45267903 ACATTATGTA
45267913 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
*
45267968 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTGGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
45268023 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
45268078 AAATTATGTAAAATTA
1 AAATTATGTAAAATTA
45268094 GGTTAGAGTT
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 124 1.00
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.38
Consensus pattern (55 bp):
AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
Found at i:45268122 original size:29 final size:29
Alignment explanation
Indices: 45268088--45268862 Score: 678
Period size: 29 Copynumber: 26.3 Consensus size: 29
45268078 AAATTATGTA
45268088 AAATTAGGTTAGAGTTAGGGTTTTTAATT
1 AAATTAGGTTAGAGTTAGGGTTTTTAATT
*
45268117 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGAGTTAGGGTTTTTAATT
45268146 AAATTAGGTTAGGGCAG-T-GGGTTTTTAATT
1 AAATTAGGTTA--G-AGTTAGGGTTTTTAATT
*
45268176 AAATTAGGTTAGGGCAG-T-GGGTTTTGGGTTAGGTTTTT
1 AAATTAGGTTA--G-AGTTAGGG-TTT---TTA----ATT
* **
45268214 TAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTA-G--A--GTTAGGGTTTTTAATT
45268248 AAATTAGGTTAGGGCAG-T-GGGTTTTTAATT
1 AAATTAGGTTA--G-AGTTAGGGTTTTTAATT
* *
45268278 AAATTAGGTTAG-GATAGGATTTTTAATT
1 AAATTAGGTTAGAGTTAGGGTTTTTAATT
*
45268306 AAATTATGTTAGGGCAG-T-GGGTTTTTAATT
1 AAATTAGGTTA--G-AGTTAGGGTTTTTAATT
45268336 AAATTAGGTTAGGGCAG-T-GGGTTTTTAATT
1 AAATTAGGTTA--G-AGTTAGGGTTTTTAATT
** *
45268366 ATGTTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGAGTTAGGGTTTTTAATT
45268395 AAATTAGGTTATG-GTTAGGGTTTTTAATT
1 AAATTAGGTTA-GAGTTAGGGTTTTTAATT
45268424 -AA--A--TTAG-GTTAGGGTTTTTAATT
1 AAATTAGGTTAGAGTTAGGGTTTTTAATT
* *
45268447 AAATTAGGTTAGGGCTGT-GAGTTTTTAATT
1 AAATTAGGTTAGAG-T-TAGGGTTTTTAATT
** *
45268477 ATGTTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGAGTTAGGGTTTTTAATT
45268506 AAATTAGGTTATG-GTTAGGGTTTTTAATT
1 AAATTAGGTTA-GAGTTAGGGTTTTTAATT
*
45268535 AAATTAGGTTAG-GGTAGTGGGTTTTTAATT
1 AAATTAGGTTAGAGTTA--GGGTTTTTAATT
*
45268565 -AATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGAGTTAGGGTTTTTAATT
*
45268593 -AATTAGGTTAGGGTTA-GGTTTTTAATT
1 AAATTAGGTTAGAGTTAGGGTTTTTAATT
* *
45268620 AAATTAAGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGAGTTAGGGTTTTTAATT
*
45268649 AAATTAGGTTATG-GTTAGGGTTTCTAATT
1 AAATTAGGTTA-GAGTTAGGGTTTTTAATT
45268678 AAATTAGGTTAGGGCAG-T-GGGTTTTTAATT
1 AAATTAGGTTA--G-AGTTAGGGTTTTTAATT
** *
45268708 AGGTTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGAGTTAGGGTTTTTAATT
* *
45268737 AAATTAGGTTAGGGTTAAGGTTTTTAATT
1 AAATTAGGTTAGAGTTAGGGTTTTTAATT
45268766 AAATTAGGTTAGGGCAG-T-GGGTTTTTAATT
1 AAATTAGGTTA--G-AGTTAGGGTTTTTAATT
45268796 AAATTAGGTTA-AGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGA-GTTAGGGTTTTTAATT
45268825 AAATTAGGTTAGGGCAG-T-GGGTTTTTAATT
1 AAATTAGGTTA--G-AGTTAGGGTTTTTAATT
45268855 AAATTAGG
1 AAATTAGG
45268863 GTTTTTATTA
Statistics
Matches: 647, Mismatches: 42, Indels: 113
0.81 0.05 0.14
Matches are distributed among these distances:
23 17 0.03
24 5 0.01
26 4 0.01
27 15 0.02
28 81 0.13
29 255 0.39
30 211 0.33
31 12 0.02
32 6 0.01
33 1 0.00
34 14 0.02
35 2 0.00
37 2 0.00
38 14 0.02
40 1 0.00
41 4 0.01
42 3 0.00
ACGTcount: A:0.27, C:0.01, G:0.28, T:0.44
Consensus pattern (29 bp):
AAATTAGGTTAGAGTTAGGGTTTTTAATT
Found at i:45268175 original size:59 final size:58
Alignment explanation
Indices: 45268088--45268862 Score: 852
Period size: 59 Copynumber: 13.1 Consensus size: 58
45268078 AAATTATGTA
*
45268088 AAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* *
45268146 AAATTAGGTTAGGG-CAGTGGGTTTTTAATTAAATTAGGTTAGGG-CAGTGGGTTTTGGGTTAGG
1 AAATTAGGTTAGGGTTA--GGGTTTTTAATTAAATTAGGTTAGGGTTA--GGG-TTT---TTA--
*
45268209 TTTTT
56 --ATT
* * *
45268214 TAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG-CAGTGGGTTTTTAATT
1 AAATT--A--GG-TTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA--GGGTTTTTAATT
* * * *
45268278 AAATTAGGTTA-GGATAGGATTTTTAATTAAATTATGTTAGGG-CAGTGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA--GGGTTTTTAATT
* **
45268336 AAATTAGGTTAGGG-CAGTGGGTTTTTAATTATGTTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTA--GGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
*
45268395 AAATTAGGTTATGGTTAGGGTTTTTAATT-AA--A--TTA-GGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* **
45268447 AAATTAGGTTAGGGCTGT-GAGTTTTTAATTATGTTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGG-T-TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
*
45268506 AAATTAGGTTATGGTTAGGGTTTTTAATTAAATTAGGTTAGGG-TAGTGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA--GGGTTTTTAATT
45268565 -AATTAGGTTAGGGTTAGGGTTTTTAATT-AATTAGGTTAGGGTTA-GGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* * *
45268620 AAATTAAGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTATGGTTAGGGTTTCTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* **
45268678 AAATTAGGTTAGGG-CAGTGGGTTTTTAATTAGGTTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTA--GGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
* *
45268737 AAATTAGGTTAGGGTTAAGGTTTTTAATTAAATTAGGTTAGGG-CAGTGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA--GGGTTTTTAATT
* *
45268796 AAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGG-CAGTGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA--GGGTTTTTAATT
45268855 AAATTAGG
1 AAATTAGG
45268863 GTTTTTATTA
Statistics
Matches: 626, Mismatches: 48, Indels: 85
0.82 0.06 0.11
Matches are distributed among these distances:
52 30 0.05
53 15 0.02
54 1 0.00
55 12 0.02
56 28 0.04
57 34 0.05
58 184 0.29
59 226 0.36
60 28 0.04
61 4 0.01
62 1 0.00
64 9 0.01
68 9 0.01
70 1 0.00
71 3 0.00
72 34 0.05
73 6 0.01
74 1 0.00
ACGTcount: A:0.27, C:0.01, G:0.28, T:0.44
Consensus pattern (58 bp):
AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT
Found at i:45268186 original size:88 final size:88
Alignment explanation
Indices: 45268088--45268862 Score: 958
Period size: 88 Copynumber: 8.8 Consensus size: 88
45268078 AAATTATGTA
*
45268088 AAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAG
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAG
45268153 GTTAGGGCAGTGGGTTTTTAATT
66 GTTAGGGCAGTGGGTTTTTAATT
* * * *
45268176 AAATTAGGTTAGGG-CAGTGGGTTTTGGGTTAGGTTTTTTAATTAAATTAGGTTAGGGTTAGGGT
1 AAATTAGGTTAGGGTTA--GGG-TTT---TTA----ATTAAATT--A--GG-TTAGGGTTAGGGT
45268240 TTTTAATTAAATTAGGTTAGGGCAGTGGGTTTTTAATT
51 TTTTAATTAAATTAGGTTAGGGCAGTGGGTTTTTAATT
* * * *
45268278 AAATTAGGTTA-GGATAGGATTTTTAATTAAATTATGTTAGGG-CAGTGGGTTTTTAATTAAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA--GGGTTTTTAATTAAATT
45268341 AGGTTAGGGCAGTGGGTTTTTAATT
64 AGGTTAGGGCAGTGGGTTTTTAATT
** *
45268366 ATGTTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTATGGTTAGGGTTTTTAATTAAATTAG
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAG
45268431 GTT-----A--GGGTTTTTAATT
66 GTTAGGGCAGTGGGTTTTTAATT
* **
45268447 AAATTAGGTTAGGGCTGT-GAGTTTTTAATTATGTTAGGTTAGGGTTAGGGTTTTTAATTAAATT
1 AAATTAGGTTAGGG-T-TAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATT
* *
45268511 AGGTTATGG--TTAGGGTTTTTAATT
64 AGGTTAGGGCAGT-GGGTTTTTAATT
45268535 AAATTAGGTTAGGG-TAGTGGGTTTTTAATT-AATTAGGTTAGGGTTAGGGTTTTTAATT-AATT
1 AAATTAGGTTAGGGTTA--GGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATT
* *
45268597 AGGTTAGGG--TTAGGTTTTTAATT
64 AGGTTAGGGCAGTGGGTTTTTAATT
* * *
45268620 AAATTAAGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTATGGTTAGGGTTTCTAATTAAATTAG
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAG
45268685 GTTAGGGCAGTGGGTTTTTAATT
66 GTTAGGGCAGTGGGTTTTTAATT
** *
45268708 AGGTTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAAGGTTTTTAATTAAATTAG
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAG
45268773 GTTAGGGCAGTGGGTTTTTAATT
66 GTTAGGGCAGTGGGTTTTTAATT
* *
45268796 AAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGG-CAGTGGGTTTTTAATTAAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA--GGGTTTTTAATTAAATT
45268860 AGG
64 AGG
45268863 GTTTTTATTA
Statistics
Matches: 603, Mismatches: 45, Indels: 77
0.83 0.06 0.11
Matches are distributed among these distances:
81 24 0.04
82 48 0.08
83 2 0.00
84 12 0.02
85 51 0.08
86 30 0.05
87 34 0.06
88 258 0.43
89 49 0.08
90 5 0.01
92 6 0.01
93 3 0.00
96 3 0.00
97 6 0.01
99 4 0.01
100 2 0.00
101 3 0.00
102 63 0.10
ACGTcount: A:0.27, C:0.01, G:0.28, T:0.44
Consensus pattern (88 bp):
AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAG
GTTAGGGCAGTGGGTTTTTAATT
Found at i:45268253 original size:72 final size:72
Alignment explanation
Indices: 45268128--45268272 Score: 247
Period size: 72 Copynumber: 2.0 Consensus size: 72
45268118 AATTAGGTTA
45268128 GGGTTAGGGTTTTTAATTAAATTAGGTTAGGGCAGTGGGTTTTTAATTAAATTAGGTTAGGGCAG
1 GGGTTAGGGTTTTTAATTAAATTAGGTTAGGGCAG-GGGTTTTTAATTAAATTAGGTTAGGGCAG
45268193 TGGGTTTT
65 TGGGTTTT
* *
45268201 GGGTTAGGTTTTTTAATTAAATTAGGTTAGGGTTA-GGGTTTTTAATTAAATTAGGTTAGGGCAG
1 GGGTTAGGGTTTTTAATTAAATTAGGTTAGGG-CAGGGGTTTTTAATTAAATTAGGTTAGGGCAG
45268265 TGGGTTTT
65 TGGGTTTT
45268273 TAATTAAATT
Statistics
Matches: 69, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
72 37 0.54
73 31 0.45
74 1 0.01
ACGTcount: A:0.23, C:0.02, G:0.32, T:0.43
Consensus pattern (72 bp):
GGGTTAGGGTTTTTAATTAAATTAGGTTAGGGCAGGGGTTTTTAATTAAATTAGGTTAGGGCAGT
GGGTTTT
Found at i:45268460 original size:23 final size:23
Alignment explanation
Indices: 45268378--45268460 Score: 112
Period size: 23 Copynumber: 3.3 Consensus size: 23
45268368 GTTAGGTTAG
45268378 GGTTAGGGTTTTTAATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATT-AA--A--TTA
45268406 TGGTTAGGGTTTTTAATTAAATTA
1 -GGTTAGGGTTTTTAATTAAATTA
45268430 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
45268453 GGTTAGGG
1 GGTTAGGG
45268461 CTGTGAGTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
23 31 0.57
24 3 0.06
26 1 0.02
28 2 0.04
29 17 0.31
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.46
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:45268968 original size:71 final size:71
Alignment explanation
Indices: 45268868--45269052 Score: 291
Period size: 71 Copynumber: 2.6 Consensus size: 71
45268858 TTAGGGTTTT
* * * *
45268868 TATTACATCAAATAGAACTTCTATTTTATTATATTAAATAATATCAAAATAACTCGAAAAAATTT
1 TATTATATTAAATA-AACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTT
*
45268933 CTATGCC
65 CTATGCA
*
45268940 TATTATATTAAATAAACTTCTATTTTATTACATCAGATAATATCAAAATAACTCGAAAAAATTTC
1 TATTATATTAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTTC
45269005 TATGCA
66 TATGCA
45269011 TATT-TCATTAAATAAACTTCTATTTTATTACATCAAATAATA
1 TATTAT-ATTAAATAAACTTCTATTTTATTACATCAAATAATA
45269053 AATTTAAATA
Statistics
Matches: 105, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
70 1 0.01
71 92 0.88
72 12 0.11
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.39
Consensus pattern (71 bp):
TATTATATTAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTTC
TATGCA
Found at i:45269481 original size:18 final size:18
Alignment explanation
Indices: 45269454--45269488 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
45269444 CGGAAAAGGA
* *
45269454 TACATGTAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
45269472 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
45269489 AAACACACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.34, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:45270150 original size:7 final size:7
Alignment explanation
Indices: 45270140--45270164 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
45270130 TTATATACAT
45270140 AATACTA
1 AATACTA
45270147 AATACTA
1 AATACTA
45270154 AATACTA
1 AATACTA
45270161 AATA
1 AATA
45270165 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:45270914 original size:30 final size:30
Alignment explanation
Indices: 45270880--45270940 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
45270870 TCTAGAGTGA
45270880 TAGTGCACTCTCCACATGGAAGATGGAATG
1 TAGTGCACTCTCCACATGGAAGATGGAATG
45270910 TAGTGCACTCTCCACATGGAAGATGGAATG
1 TAGTGCACTCTCCACATGGAAGATGGAATG
45270940 T
1 T
45270941 GTGTGTCTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (30 bp):
TAGTGCACTCTCCACATGGAAGATGGAATG
Found at i:45271157 original size:22 final size:22
Alignment explanation
Indices: 45271132--45271194 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
45271122 TATAACAAAT
45271132 AATAAATTAATAATTATCTAAA
1 AATAAATTAATAATTATCTAAA
* * *
45271154 AATACATAAATAA-TATTTAAA
1 AATAAATTAATAATTATCTAAA
*
45271175 AATTAAATTTAATACTTATC
1 AA-TAAA-TTAATAATTATC
45271195 ATTTTCATTT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
21 9 0.29
22 14 0.45
23 5 0.16
24 3 0.10
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (22 bp):
AATAAATTAATAATTATCTAAA
Found at i:45271293 original size:30 final size:30
Alignment explanation
Indices: 45271259--45271323 Score: 130
Period size: 30 Copynumber: 2.2 Consensus size: 30
45271249 GCCATTGATG
45271259 AAAATATAAAAAAAATTAAAATTATTTTAA
1 AAAATATAAAAAAAATTAAAATTATTTTAA
45271289 AAAATATAAAAAAAATTAAAATTATTTTAA
1 AAAATATAAAAAAAATTAAAATTATTTTAA
45271319 AAAAT
1 AAAAT
45271324 GAAATTGAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (30 bp):
AAAATATAAAAAAAATTAAAATTATTTTAA
Found at i:45271393 original size:44 final size:44
Alignment explanation
Indices: 45271338--45271424 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
45271328 TTGAGGGGAA
*
45271338 ATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAGGAAATTG
1 ATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAGAAAATTG
*
45271382 ATTGAAATTAAATATGGGTTTGAGAGAATTTTGGAAGAAAATT
1 ATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAGAAAATT
45271425 TGGAAGGAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.34
Consensus pattern (44 bp):
ATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAGAAAATTG
Found at i:45276650 original size:45 final size:44
Alignment explanation
Indices: 45276601--45276788 Score: 195
Period size: 45 Copynumber: 4.2 Consensus size: 44
45276591 TTAGCCCCGA
45276601 TCTTATTTATTTCCGATATGATGTCATAGTGTCTTTCAACTATGG
1 TCTTATTTATTTCCGATAT-ATGTCATAGTGTCTTTCAACTATGG
* * * *
45276646 TCTTATTCATTTCCG-TCATGTTGCCATAGTGTTTTTCAACTATGG
1 TCTTATTTATTTCCGAT-AT-ATGTCATAGTGTCTTTCAACTATGG
* * *
45276691 TCTTATTCATTTCCGGTATA-GTTCCATAGTGTCTTTCAATTATGG
1 TCTTATTTATTTCCGATATATG-T-CATAGTGTCTTTCAACTATGG
* *
45276736 TCTTATTCT-TTT-CTAGTATAGTGTCATAATGTCTTTCAACTATGG
1 TCTTATT-TATTTCCGA-TATA-TGTCATAGTGTCTTTCAACTATGG
45276781 TCTTATTT
1 TCTTATTT
45276789 GTTTTTCAAG
Statistics
Matches: 122, Mismatches: 13, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 115 0.94
46 2 0.02
47 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.48
Consensus pattern (44 bp):
TCTTATTTATTTCCGATATATGTCATAGTGTCTTTCAACTATGG
Found at i:45279074 original size:21 final size:21
Alignment explanation
Indices: 45279050--45279101 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
45279040 TTAGGCTCAT
45279050 AAATAATTAATTAAAGTATTA
1 AAATAATTAATTAAAGTATTA
*
45279071 AAATAATATAA-TCAAGTATTA
1 AAATAAT-TAATTAAAGTATTA
*
45279092 TAAT-ATTAAT
1 AAATAATTAAT
45279102 GAGTTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 3 0.11
20 2 0.07
21 19 0.70
22 3 0.11
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (21 bp):
AAATAATTAATTAAAGTATTA
Found at i:45280528 original size:28 final size:28
Alignment explanation
Indices: 45280480--45280645 Score: 155
Period size: 28 Copynumber: 6.0 Consensus size: 28
45280470 AACCATCTAT
* *
45280480 CCCCTATTTTTTCAAAATTTATAGTTTTG
1 CCCCTATTTTTT-AAATTTTATAATTTTG
45280509 CCCCTATTTTTTAAATTTTATAATTTTG
1 CCCCTATTTTTTAAATTTTATAATTTTG
* * * *
45280537 CCCTTATTTTTTGAATTTCATATTTTTG
1 CCCCTATTTTTTAAATTTTATAATTTTG
* *
45280565 CCTCTATTTTTTAGATTTTATAATTTTG
1 CCCCTATTTTTTAAATTTTATAATTTTG
* * *
45280593 --CCTATATTTTCAAATTTTACAGTATTT-
1 CCCCTAT-TTTTTAAATTTTATAAT-TTTG
45280620 --CCT-TTTTTTCAAATTTTATAATTTTG
1 CCCCTATTTTTT-AAATTTTATAATTTTG
45280646 TCCACTGCTT
Statistics
Matches: 113, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
25 7 0.06
26 15 0.13
27 16 0.14
28 63 0.56
29 12 0.11
ACGTcount: A:0.23, C:0.14, G:0.05, T:0.57
Consensus pattern (28 bp):
CCCCTATTTTTTAAATTTTATAATTTTG
Found at i:45280965 original size:34 final size:33
Alignment explanation
Indices: 45280927--45281000 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 33
45280917 AGAATGACTT
45280927 TTGCTACCGAGTT-GAACTGTTATAAGCATATTAA
1 TTGCTACC-AGTTCGAACTGTTATAAGCATATT-A
* **
45280961 TTGCTA-CTGTTCCGATTTGTTATAAGCATATTA
1 TTGCTACCAGTT-CGAACTGTTATAAGCATATTA
45280994 TTGCTAC
1 TTGCTAC
45281001 TATATTATTC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
32 3 0.09
33 8 0.24
34 23 0.68
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (33 bp):
TTGCTACCAGTTCGAACTGTTATAAGCATATTA
Found at i:45289117 original size:14 final size:14
Alignment explanation
Indices: 45289081--45289119 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
45289071 AGATATGAAG
*
45289081 CAGAAGAGGAAAGA
1 CAGAAGAGAAAAGA
*
45289095 -AGCAGAGAAAAGA
1 CAGAAGAGAAAAGA
45289108 CAGAAGAGAAAA
1 CAGAAGAGAAAA
45289120 AGGGCACGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.62, C:0.08, G:0.31, T:0.00
Consensus pattern (14 bp):
CAGAAGAGAAAAGA
Found at i:45294616 original size:90 final size:90
Alignment explanation
Indices: 45294506--45294879 Score: 588
Period size: 90 Copynumber: 4.1 Consensus size: 90
45294496 TCGACAGCGA
** *
45294506 AGCAGATCGAAGATACCAGCCTAGTCTCCCTGAGCAGCAGGGGAGTAGGTTGAAAGACATTACAG
1 AGCAGATCGAAGACCCCAGCCTAGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAGACATTACAG
45294571 ATCTTATCTCCCTAAACAGTAGTGG
66 ATCTTATCTCCCTAAACAGTAGTGG
*
45294596 AGCAAATCGAAGACCCCAGCCTAGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAGACATTACAG
1 AGCAGATCGAAGACCCCAGCCTAGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAGACATTACAG
**
45294661 ATCTTATCTCCCTAAGTAGTAGTGG
66 ATCTTATCTCCCTAAACAGTAGTGG
** *
45294686 AGCAGATCGAAGACCCTGGCCTAGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAGACATTACAG
1 AGCAGATCGAAGACCCCAGCCTAGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAGACATTACAG
**
45294751 ATCTTATCTCCCTAAGTAGTAGTGG
66 ATCTTATCTCCCTAAACAGTAGTGG
* * * *
45294776 AGTAGATCGAAGACCCCAGCCTTGTCTCCCTGAGTAGCAGTGGAGTAGTTTAAGAAA-ACATTAC
1 AGCAGATCGAAGACCCCAGCCTAGTCTCCCTGAGCAGCAGTGGAGTAGGTT--GAAAGACATTAC
45294840 AGATCTTATCTCCCTAAACAGTAGTGG
64 AGATCTTATCTCCCTAAACAGTAGTGG
45294867 AGCAGATCGAAGA
1 AGCAGATCGAAGA
45294880 TGGCAGATTT
Statistics
Matches: 262, Mismatches: 20, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
90 214 0.82
91 44 0.17
92 4 0.02
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (90 bp):
AGCAGATCGAAGACCCCAGCCTAGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAGACATTACAG
ATCTTATCTCCCTAAACAGTAGTGG
Found at i:45294821 original size:43 final size:43
Alignment explanation
Indices: 45294588--45294823 Score: 175
Period size: 43 Copynumber: 5.3 Consensus size: 43
45294578 CTCCCTAAAC
* * * *
45294588 AGTAGTGGAGCAAATCGAAGACCCCAGCCTAGTCTCCCTGAGC
1 AGTAGTGGAGTAGATCGAAGACCCCAGCCTTGTCTCCCTGAGT
* * * ** * * *
45294631 AGCAGTGGAGTAGGTTGAAAGACATTACAGATCTTATCTCCCTAAGT
1 AGTAGTGGAGTAGATCG-AAGAC--CCCAG-CCTTGTCTCCCTGAGT
* ** * *
45294678 AGTAGTGGAGCAGATCGAAGACCCTGGCCTAGTCTCCCTGAGC
1 AGTAGTGGAGTAGATCGAAGACCCCAGCCTTGTCTCCCTGAGT
* * ** * * *
45294721 AGTAGTGGAGTAGGTTGAAAGACATTACAGATCTTATCTCCCTAAGT
1 AGTAGTGGAGTAGATCG-AAGAC--CCCAG-CCTTGTCTCCCTGAGT
45294768 AGTAGTGGAGTAGATCGAAGACCCCAGCCTTGTCTCCCTGAGT
1 AGTAGTGGAGTAGATCGAAGACCCCAGCCTTGTCTCCCTGAGT
*
45294811 AGCAGTGGAGTAG
1 AGTAGTGGAGTAG
45294824 TTTAAGAAAA
Statistics
Matches: 140, Mismatches: 45, Indels: 16
0.70 0.22 0.08
Matches are distributed among these distances:
43 62 0.44
44 14 0.10
46 14 0.10
47 50 0.36
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (43 bp):
AGTAGTGGAGTAGATCGAAGACCCCAGCCTTGTCTCCCTGAGT
Found at i:45304167 original size:39 final size:39
Alignment explanation
Indices: 45304103--45304192 Score: 126
Period size: 39 Copynumber: 2.3 Consensus size: 39
45304093 CACCAGTTTT
* * *
45304103 ACCACCACCACCTCCTGTGCCTAGAAGTGCATCATTACC
1 ACCACCACCACCTCCTATGCATAGAACTGCATCATTACC
* * *
45304142 ACCCCCACCACCTCCTATTCATAGAACTGCCTCATTACC
1 ACCACCACCACCTCCTATGCATAGAACTGCATCATTACC
45304181 ACCACCACCACC
1 ACCACCACCACC
45304193 ACCACCTATG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.27, C:0.47, G:0.08, T:0.19
Consensus pattern (39 bp):
ACCACCACCACCTCCTATGCATAGAACTGCATCATTACC
Found at i:45311827 original size:15 final size:15
Alignment explanation
Indices: 45311807--45311838 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
45311797 TAGAATATAT
45311807 AAGAAAAATTTGGAA
1 AAGAAAAATTTGGAA
45311822 AAGAAAAATTTGGAA
1 AAGAAAAATTTGGAA
45311837 AA
1 AA
45311839 AATTGAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (15 bp):
AAGAAAAATTTGGAA
Found at i:45313061 original size:6 final size:6
Alignment explanation
Indices: 45313047--45313078 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
45313037 AGTCGTAACC
*
45313047 TTTCAT TTTCCT TTTCCT TTTCCT TTTCCT TT
1 TTTCCT TTTCCT TTTCCT TTTCCT TTTCCT TT
45313079 ACATCGTTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTCCT
Found at i:45323849 original size:20 final size:20
Alignment explanation
Indices: 45323785--45323849 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
45323775 TACCAAAGTA
* * *
45323785 CAAACAGGGCCACAAATGTG
1 CAAACAGGGGCACGAATGGG
* * *
45323805 CAAATAGGGGTATCG-A-GGA
1 CAAACAGGGGCA-CGAATGGG
45323824 CAAACAGGGGCACGAATGGG
1 CAAACAGGGGCACGAATGGG
45323844 CAAACA
1 CAAACA
45323850 AGGGTATTGA
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
18 2 0.06
19 12 0.36
20 18 0.55
21 1 0.03
ACGTcount: A:0.40, C:0.20, G:0.31, T:0.09
Consensus pattern (20 bp):
CAAACAGGGGCACGAATGGG
Found at i:45323867 original size:20 final size:20
Alignment explanation
Indices: 45323823--45323889 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
45323813 GGTATCGAGG
* * *
45323823 ACAAACAGGGGCACGAATGG
1 ACAAACAAGGGCATGAATGT
* *
45323843 GCAAACAAGGGTATTGAA-GT
1 ACAAACAAGGGCA-TGAATGT
*
45323863 ACAAATAAGGGCATGAATGT
1 ACAAACAAGGGCATGAATGT
45323883 ACAAACA
1 ACAAACA
45323890 TTCAATAATT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
19 4 0.11
20 29 0.81
21 3 0.08
ACGTcount: A:0.45, C:0.15, G:0.27, T:0.13
Consensus pattern (20 bp):
ACAAACAAGGGCATGAATGT
Found at i:45327965 original size:22 final size:22
Alignment explanation
Indices: 45327937--45327983 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
45327927 CCGAGTACAA
45327937 ATACATCACTTTCTATAGTTTT
1 ATACATCACTTTCTATAGTTTT
45327959 ATACATCACTTTCTATAGTTTT
1 ATACATCACTTTCTATAGTTTT
45327981 ATA
1 ATA
45327984 TTGGATTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.04, T:0.49
Consensus pattern (22 bp):
ATACATCACTTTCTATAGTTTT
Found at i:45334893 original size:27 final size:27
Alignment explanation
Indices: 45334839--45334893 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
45334829 AATATAATAT
*
45334839 AATTATAAAAAAATTAAATTGTACTTA
1 AATTATAAAAAAATTAAATTGTAATTA
* *
45334866 AATTATTAAAATATTTAAATT-TAATTA
1 AATTA-TAAAAAAATTAAATTGTAATTA
45334893 A
1 A
45334894 TTTTATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (27 bp):
AATTATAAAAAAATTAAATTGTAATTA
Found at i:45336388 original size:13 final size:13
Alignment explanation
Indices: 45336372--45336401 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
45336362 TTTTTACATT
*
45336372 TTAATTTTCTTAG
1 TTAATTTACTTAG
45336385 TTAATTTACTTAG
1 TTAATTTACTTAG
45336398 TTAA
1 TTAA
45336402 AATCTAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (13 bp):
TTAATTTACTTAG
Found at i:45337159 original size:85 final size:85
Alignment explanation
Indices: 45337016--45337194 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
45337006 GGCCGGCCAT
45337016 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
45337081 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
45337101 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
45337166 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
45337186 GGGCATGGG
1 GAGCATGGG
45337195 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:45338535 original size:49 final size:49
Alignment explanation
Indices: 45338456--45338579 Score: 207
Period size: 49 Copynumber: 2.5 Consensus size: 49
45338446 TATTTGAATA
45338456 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
45338503 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
45338552 AATGTGAAAGTGTATATATCGATGTGAT
1 AATGTGAAAGTGTATATAT--ATGTGAT
45338580 GAATGTGAAA
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
47 12 0.17
49 53 0.74
51 7 0.10
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:45338576 original size:29 final size:29
Alignment explanation
Indices: 45338542--45338599 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
45338532 GCCTAATGGC
45338542 CGATGTGATGAATGTGAAAGTGTATATAT
1 CGATGTGATGAATGTGAAAGTGTATATAT
45338571 CGATGTGATGAATGTGAAAGTGTATATAT
1 CGATGTGATGAATGTGAAAGTGTATATAT
45338600 GTGATAAGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.34
Consensus pattern (29 bp):
CGATGTGATGAATGTGAAAGTGTATATAT
Found at i:45338624 original size:76 final size:75
Alignment explanation
Indices: 45338495--45338653 Score: 266
Period size: 76 Copynumber: 2.1 Consensus size: 75
45338485 CTAATGGCCA
* *
45338495 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAA
45338560 AGTGTATATAT
65 AGTGTATATAT
45338571 CGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGA
1 --ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGA
45338635 AAGTGTATATAT
64 AAGTGTATATAT
45338647 ATGTGAT
1 ATGTGAT
45338654 AAGGCCTAAT
Statistics
Matches: 79, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
74 7 0.09
76 52 0.66
78 20 0.25
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.33
Consensus pattern (75 bp):
ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAA
GTGTATATAT
Found at i:45338673 original size:49 final size:47
Alignment explanation
Indices: 45338573--45339036 Score: 673
Period size: 47 Copynumber: 9.7 Consensus size: 47
45338563 GTATATATCG
* *
45338573 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* *
45338620 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
* * *
45338669 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
45338718 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
45338765 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
* *
45338814 ATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
* *
45338861 ATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
* *
45338908 ATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
*
45338955 ATGTGATGAATGTGAAAGTCTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * *
45339002 ATGTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
45339037 TCCCGAAGGG
Statistics
Matches: 392, Mismatches: 19, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 252 0.64
49 138 0.35
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:45338682 original size:96 final size:94
Alignment explanation
Indices: 45338573--45339036 Score: 673
Period size: 96 Copynumber: 4.9 Consensus size: 94
45338563 GTATATATCG
* *
45338573 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* *
45338638 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCGAATGGCCA
* * *
45338669 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
45338734 AGTGTATATATGTGATAAGGCCGAATGGCCA
64 AGTGTATATATGTGATAAGGCCGAATGGCCA
45338765 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
45338830 CA-TGTGTATGTGTGATAAGGCCGAATGGCCA
64 -AGTGTATATATGTGATAAGGCCGAATGGCCA
* *
45338861 ATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-
* *
45338925 A-TGCATATATGAGATAAGGCCGAATGGCCA
64 AGTGTATATATGTGATAAGGCCGAATGGCCA
* * *
45338955 ATGTGATGAATGTGAAAGTCTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
45339020 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
45339037 TCCCGAAGGG
Statistics
Matches: 338, Mismatches: 24, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
93 2 0.01
94 138 0.41
96 152 0.45
97 2 0.01
98 44 0.13
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCGAATGGCCA
Found at i:45338914 original size:22 final size:22
Alignment explanation
Indices: 45338887--45339008 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
45338877 CATGTGTATG
45338887 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
45338909 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
45338934 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * * * *
45338956 TGTGATGAATG-TGAAAGTCTATATA
1 TGTGAT-AAGGCCGAATGGC--CA-A
45338981 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
45339003 TGTGAT
1 TGTGAT
45339009 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 25 0.36
23 13 0.19
24 13 0.19
25 19 0.27
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:45341529 original size:38 final size:38
Alignment explanation
Indices: 45341465--45341539 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
45341455 AATTCGAGTT
*
45341465 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
45341503 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
45341540 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:45341655 original size:40 final size:40
Alignment explanation
Indices: 45341593--45341991 Score: 588
Period size: 40 Copynumber: 10.1 Consensus size: 40
45341583 AGGTCTCGAC
*
45341593 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
45341632 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
45341672 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
45341712 GATGTATCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* *
45341751 GATGTATCCGGGTTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
*
45341791 GATGTATCTGGGCTAAG-TCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* *
45341830 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCCTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* *
45341870 GATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* * *** * *
45341910 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* * * * * *
45341950 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
45341990 GA
1 GA
45341992 CGTGTATTCG
Statistics
Matches: 330, Mismatches: 27, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
39 79 0.24
40 251 0.76
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
Found at i:45341769 original size:79 final size:79
Alignment explanation
Indices: 45341593--45341991 Score: 593
Period size: 79 Copynumber: 5.0 Consensus size: 79
45341583 AGGTCTCGAC
45341593 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAG-TCCGAAG
45341657 AGCATTCATGCTAGT
65 AGCATTCATGCTAGT
*
45341672 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGA
45341737 GCATTCATGCTAGT
66 GCATTCATGCTAGT
* * * *
45341751 GATGTATCCGGGTTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCTGGGCTAAGTCCGAAGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGA
45341816 GCATTCATGCTAGT
66 GCATTCATGCTAGT
* *
45341830 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCCTGCTAGTGATGTATCCGGGCTAAGTTTCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAG-TCCGAAG
*
45341895 AGCATTCGTGCTAGT
65 AGCATTCATGCTAGT
* * ** * * * * *
45341910 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-CCGAAG
* *
45341975 AGCAATCATGCTGGT
65 AGCATTCATGCTAGT
45341990 GA
1 GA
45341992 CGTGTATTCG
Statistics
Matches: 294, Mismatches: 23, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
79 156 0.53
80 138 0.47
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGA
GCATTCATGCTAGT
Found at i:45341853 original size:119 final size:119
Alignment explanation
Indices: 45341593--45341991 Score: 622
Period size: 119 Copynumber: 3.4 Consensus size: 119
45341583 AGGTCTCGAC
45341593 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
*
45341657 AGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
66 AGCATTCGTGCTAGTGATGTATCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGT
*
45341712 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTATCCGGGTTAAGTTCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
*
45341776 AGCATTCGTGCTAGTGATGTATCTGGGCTAAGTCCGAAGAGCATTCATGCTAGT
66 AGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGT
* *
45341830 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCCTGCTAGTGATGTATCCGGGCTAAGTTTCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
* * ** * *
45341895 AGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
66 AGCATTCGTGCTAGTGATGTATCCGGGCT-AAGTCCGAAGAGCATTCATGCTAGT
* * * * *
45341950 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
45341992 CGTGTATTCG
Statistics
Matches: 258, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
118 40 0.16
119 148 0.57
120 70 0.27
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (119 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
AGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGT
Found at i:45343390 original size:85 final size:85
Alignment explanation
Indices: 45343247--45343425 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
45343237 GGCCGGCCAT
*
45343247 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTAGGGTAGTGCATTAT
45343312 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
45343332 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTAGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTAGGGTAGTGCATTAT
45343397 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
45343417 GGGCATGGG
1 GAGCATGGG
45343426 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTAGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:45344769 original size:49 final size:49
Alignment explanation
Indices: 45344690--45344813 Score: 207
Period size: 49 Copynumber: 2.5 Consensus size: 49
45344680 TATTTGAATA
45344690 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
45344737 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
45344786 AATGTGAAAGTGTATATATCGATGTGAT
1 AATGTGAAAGTGTATATAT--ATGTGAT
45344814 GAATGTGAAA
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
47 12 0.17
49 53 0.74
51 7 0.10
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:45344810 original size:29 final size:29
Alignment explanation
Indices: 45344776--45344833 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
45344766 GCCTAATGGC
45344776 CGATGTGATGAATGTGAAAGTGTATATAT
1 CGATGTGATGAATGTGAAAGTGTATATAT
45344805 CGATGTGATGAATGTGAAAGTGTATATAT
1 CGATGTGATGAATGTGAAAGTGTATATAT
45344834 GTGATAAGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.34
Consensus pattern (29 bp):
CGATGTGATGAATGTGAAAGTGTATATAT
Found at i:45344858 original size:76 final size:75
Alignment explanation
Indices: 45344729--45344887 Score: 266
Period size: 76 Copynumber: 2.1 Consensus size: 75
45344719 CTAATGGCCA
* *
45344729 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAA
45344794 AGTGTATATAT
65 AGTGTATATAT
45344805 CGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGA
1 --ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGA
45344869 AAGTGTATATAT
64 AAGTGTATATAT
45344881 ATGTGAT
1 ATGTGAT
45344888 AAGGCCTAAT
Statistics
Matches: 79, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
74 7 0.09
76 52 0.66
78 20 0.25
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.33
Consensus pattern (75 bp):
ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAA
GTGTATATAT
Found at i:45344907 original size:49 final size:47
Alignment explanation
Indices: 45344807--45345252 Score: 470
Period size: 47 Copynumber: 9.7 Consensus size: 47
45344797 GTATATATCG
* *
45344807 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* *
45344854 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
*
45344903 ATGTGATGAATGTGAAAGTGTATATATATGTGAT-A---C-TATGG---
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
* * * *
45344944 ATGTGATGTAA-GTTATATTG-ATA-A-G-GCCTAATGGCCG-A------
1 ATGTGATG-AATGTGAAAGTGTATATATGTG-ATAA-GGCCGAATGGCCA
*
45344982 -TGTGATGAATGTGAAAGCGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
45345028 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCA
* *
45345077 ATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
* *
45345124 ATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
*
45345171 ATGTGATGAATGTGAAAGTCTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * *
45345218 ATGTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
45345253 TCCCGAAGGG
Statistics
Matches: 346, Mismatches: 26, Indels: 54
0.81 0.06 0.13
Matches are distributed among these distances:
35 1 0.00
36 4 0.01
37 14 0.04
38 6 0.02
39 6 0.02
40 5 0.01
41 17 0.05
42 2 0.01
44 4 0.01
45 1 0.00
46 1 0.00
47 179 0.52
48 1 0.00
49 104 0.30
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:45344912 original size:125 final size:122
Alignment explanation
Indices: 45344690--45345063 Score: 567
Period size: 125 Copynumber: 3.0 Consensus size: 122
45344680 TATTTGAATA
45344690 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
45344755 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATCGATGTGAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT--ATGTGAT
*
45344814 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
1 -AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
45344879 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
** * *
45344937 ACTATG-GATGTGATGTAAGTTATAT-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGC
1 A--ATGTGA-AAG-TGT-A--TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT
* *
45345000 G--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGAT
59 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
45345062 AA
1 AA
45345064 GGCCGAATGG
Statistics
Matches: 234, Mismatches: 8, Indels: 16
0.91 0.03 0.06
Matches are distributed among these distances:
122 1 0.00
123 10 0.04
124 4 0.02
125 177 0.76
126 1 0.00
127 36 0.15
128 5 0.02
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (122 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
Found at i:45344985 original size:174 final size:176
Alignment explanation
Indices: 45344690--45345252 Score: 607
Period size: 174 Copynumber: 3.2 Consensus size: 176
45344680 TATTTGAATA
45344690 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
* ** * * **
45344753 TATATGTGATAAGGCCTAATGG--CCGATGTGA-TGA-ATGTGA-AAGTG--TATAT-ATCGATG
66 TATATGTGAT---GACT-ATGGATGTGATGTAAGTTATATGTGATAAG-GCCTA-ATGGCCGATG
* *
45344810 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATG
125 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
45344862 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
45344927 TATATGTGAT-ACTATGGATGTGATGTAAGTTATAT-TGATAAGGCCTAATGGCCGATGTGATGA
66 TATATGTGATGACTATGGATGTGATGTAAGTTATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
45344990 ATGTGAAAGCGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
131 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
45345036 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-A-GTGTA
* * * * * * * * *
45345101 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATG-TGAACATGCATATATGAGATAAGGCCGAA
64 --TAT-AT-ATG-TG-AT-GACTATG-GATG--TGATGTA-A-G-TTATATGTGATAAGGCCTAA
* *
45345165 TGGCCAATGTGATGAATGTGAAAGTCTATATATGTGATAAGGCCGAATGGCCAATGTGATG
116 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
45345226 GATGTGGAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
45345253 TCCCGAAGGG
Statistics
Matches: 337, Mismatches: 27, Indels: 38
0.84 0.07 0.09
Matches are distributed among these distances:
169 4 0.01
170 2 0.01
171 6 0.02
172 18 0.05
173 7 0.02
174 171 0.51
175 1 0.00
176 5 0.01
178 2 0.01
179 2 0.01
180 2 0.01
181 1 0.00
182 2 0.01
184 4 0.01
185 4 0.01
186 3 0.01
187 3 0.01
188 11 0.03
189 6 0.02
190 83 0.25
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (176 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATATGTGATGACTATGGATGTGATGTAAGTTATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:45345121 original size:143 final size:141
Alignment explanation
Indices: 45344962--45345231 Score: 445
Period size: 143 Copynumber: 1.9 Consensus size: 141
45344952 TAAGTTATAT
* * *
45344962 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-A-GCGTATATATGTGATAAGGCCGAATGG
1 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC--ATATATGAGATAAGGCCGAATGG
45345025 CCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
64 CCAATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
45345090 GAACATGTGTATGTG
127 GAACATGTGTATGTG
45345105 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
1 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
* *
45345170 AATGTGATGAATGTGAAAGTCTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
66 AATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
45345232 GAAGTGTATA
Statistics
Matches: 120, Mismatches: 5, Indels: 6
0.92 0.04 0.05
Matches are distributed among these distances:
141 42 0.35
143 75 0.62
144 1 0.01
145 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (141 bp):
TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
AATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
ATGTGTATGTG
Found at i:45352846 original size:16 final size:15
Alignment explanation
Indices: 45352816--45352849 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
45352806 ATAACTAATA
*
45352816 TATAATTATATTTAT
1 TATAATTATAATTAT
45352831 TATAATGTATAATTAT
1 TATAAT-TATAATTAT
45352847 TAT
1 TAT
45352850 CAACTTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (15 bp):
TATAATTATAATTAT
Found at i:45359306 original size:47 final size:47
Alignment explanation
Indices: 45359252--45359754 Score: 772
Period size: 47 Copynumber: 10.6 Consensus size: 47
45359242 TATTTGAATA
* *
45359252 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATATGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45359299 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
45359346 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
**
45359395 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAACCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
45359442 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45359491 AATGTGGAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45359538 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
45359585 AATGTGAAAGTGTATATATAAGTGATAAGGCTTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATG
* *
45359634 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
45359681 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45359728 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
45359755 TCCCGAAGGG
Statistics
Matches: 422, Mismatches: 28, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
47 289 0.68
49 133 0.32
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:45359378 original size:96 final size:94
Alignment explanation
Indices: 45359252--45359754 Score: 772
Period size: 96 Copynumber: 5.3 Consensus size: 94
45359242 TATTTGAATA
* *
45359252 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATATGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
45359317 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
45359346 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
**
45359411 TATGTGATAAGGCCTAATAACCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
45359442 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
45359507 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45359538 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
45359603 TAAGTGATAAGGCTTAATGGCCGATGTGATG
66 T--GTGATAAGGCCTAATGGCCGATGTGATG
* *
45359634 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * *
45359699 TGTGATAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
45359728 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
45359755 TCCCGAAGGG
Statistics
Matches: 384, Mismatches: 21, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
94 110 0.29
96 274 0.71
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:45359411 original size:143 final size:141
Alignment explanation
Indices: 45359252--45359754 Score: 772
Period size: 143 Copynumber: 3.5 Consensus size: 141
45359242 TATTTGAATA
* * *
45359252 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATATGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATA
* *
45359317 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
45359382 GGCCGATGTGATG
129 GGCCGATGTGATG
* * *
45359395 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAACCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTG--TATA
*
45359460 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
45359525 AGCCGATGTGATG
129 GGCCGATGTGATG
*
45359538 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATA
* *
45359603 TAAGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 T--GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
45359668 GGCCAATGTGATG
129 GGCCGATGTGATG
* * * * * *
45359681 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATA
45359746 TGTGATAAG
66 TGTGATAAG
45359755 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 20, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
141 15 0.04
143 277 0.82
145 44 0.13
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATG
Found at i:45361173 original size:27 final size:27
Alignment explanation
Indices: 45361143--45361211 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
45361133 ATATTGAGTC
* * *
45361143 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
45361170 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
45361197 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45361212 GTACAATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:45361224 original size:27 final size:26
Alignment explanation
Indices: 45361143--45361224 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 26
45361133 ATATTGAGTC
* * * *
45361143 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCT-TACAATTAAAT
*
45361170 CGCACACTTAGTGC-TACGTAATCAAAT
1 CGCACACTTAGTGCTTAC--AATTAAAT
*
45361197 CGCACACTTAGTGCTGTACAATTTAAT
1 CGCACACTTAGTGCT-TACAATTAAAT
45361224 C
1 C
45361225 CCGCGCACTT
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
25 2 0.04
27 41 0.89
29 3 0.07
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (26 bp):
CGCACACTTAGTGCTTACAATTAAAT
Found at i:45373621 original size:43 final size:44
Alignment explanation
Indices: 45373567--45373677 Score: 165
Period size: 43 Copynumber: 2.6 Consensus size: 44
45373557 AAAATATCGC
* *
45373567 TAAAGATCATGACCTTTAGCGGCGCTTTTGTCACAAACACCG-A
1 TAAAGAACATGACCTTTAGCGACGCTTTTGTCACAAACACCGCA
*
45373610 TAAAGAACATGACCTTTAGCGACGCTTTTGTCACAAACGCCGCA
1 TAAAGAACATGACCTTTAGCGACGCTTTTGTCACAAACACCGCA
*
45373654 -AAAGAACA-AACCTTTAGCGACGCT
1 TAAAGAACATGACCTTTAGCGACGCT
45373678 GCTCATAAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
42 15 0.24
43 47 0.75
44 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (44 bp):
TAAAGAACATGACCTTTAGCGACGCTTTTGTCACAAACACCGCA
Found at i:45378247 original size:7 final size:7
Alignment explanation
Indices: 45378235--45378305 Score: 79
Period size: 7 Copynumber: 10.1 Consensus size: 7
45378225 TACCTATCCA
45378235 TAACCCC
1 TAACCCC
45378242 TAACCCC
1 TAACCCC
*
45378249 TAATCCC
1 TAACCCC
** *
45378256 TAATTCT
1 TAACCCC
*
45378263 TAACCTC
1 TAACCCC
*
45378270 TAACCTC
1 TAACCCC
*
45378277 TAACCTC
1 TAACCCC
45378284 TAACCCC
1 TAACCCC
45378291 TAACCCC
1 TAACCCC
45378298 TAACCCC
1 TAACCCC
45378305 T
1 T
45378306 CTTTTACAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 56 1.00
ACGTcount: A:0.28, C:0.46, G:0.00, T:0.25
Consensus pattern (7 bp):
TAACCCC
Found at i:45378520 original size:20 final size:20
Alignment explanation
Indices: 45378497--45378539 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
45378487 AATTAACCTA
45378497 AACCTTAAA-CCCTAAACCCT
1 AACC-TAAATCCCTAAACCCT
*
45378517 AACCTAAATCCCTAACCCCT
1 AACCTAAATCCCTAAACCCT
45378537 AAC
1 AAC
45378540 TCCTAAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.19
Consensus pattern (20 bp):
AACCTAAATCCCTAAACCCT
Found at i:45378529 original size:13 final size:12
Alignment explanation
Indices: 45378490--45378533 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 12
45378480 AAACACTAAT
*
45378490 TAACCTAAACCT
1 TAACCTAAACCC
45378502 TAAACCCTAAACCC
1 T-AA-CCTAAACCC
45378516 TAACCTAAATCCC
1 TAACCTAAA-CCC
45378529 TAACC
1 TAACC
45378534 CCTAACTCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 7 0.25
13 12 0.43
14 9 0.32
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (12 bp):
TAACCTAAACCC
Found at i:45378587 original size:88 final size:90
Alignment explanation
Indices: 45378436--45378599 Score: 219
Period size: 88 Copynumber: 1.8 Consensus size: 90
45378426 AATCCCTAAC
* *
45378436 CCCTAACTACTAACCCATAAACCTTATTTAATATATAAATTTAAAAACACTAATTAACCTAAACC
1 CCCTAACCACTAACCCATAAACCTTATTTAATATATAAATTTAAAAACACTAATTAACATAAACC
*
45378501 TTAAACCCTAAACCCTAACCTAAAT
66 CTAAACCCTAAACCCTAACCTAAAT
* * *
45378526 CCCTAACCCCTAACTCC-TAAATCTTATTT-A-ATATAAA-TTAAAACACACTAATTAATATAAA
1 CCCTAACCACTAAC-CCATAAACCTTATTTAATATATAAATTTAAAA-ACACTAATTAACATAAA
*
45378587 CCCTAAAGCCTAA
64 CCCTAAACCCTAA
45378600 CCTGACACTG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
87 6 0.09
88 33 0.51
89 1 0.02
90 23 0.35
91 2 0.03
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (90 bp):
CCCTAACCACTAACCCATAAACCTTATTTAATATATAAATTTAAAAACACTAATTAACATAAACC
CTAAACCCTAAACCCTAACCTAAAT
Found at i:45378700 original size:14 final size:15
Alignment explanation
Indices: 45378681--45378713 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
45378671 CTTAAACCAG
45378681 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
45378695 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
45378710 AATC
1 AATC
45378714 TATAAACGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:45379257 original size:41 final size:41
Alignment explanation
Indices: 45379097--45379257 Score: 180
Period size: 41 Copynumber: 3.9 Consensus size: 41
45379087 ATAAAATGTT
* * ***
45379097 TTAGCGGCGCTTTCTCAAAAACGCTGCTAAAGTTTCGAGCA
1 TTAGCGACGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGCA
* *
45379138 TTAGCGACGCTTTCTCAAAAACGCCGCTAAAGCTCCGAGCC
1 TTAGCGACGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGCA
* * * *
45379179 TTAGCTACGCTTTTTCAAAAACGCCACTAAAAG-CCCGATCA
1 TTAGCGACGCTTTCTCAAAAACGCCGCT-AAAGCCCCGAGCA
* * *
45379220 TTAGCGGCGCTTTTTCAAAAACGCTGCTAAAGCCCCGA
1 TTAGCGACGCTTTCTCAAAAACGCCGCTAAAGCCCCGA
45379258 AAGGTCAGAT
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
40 4 0.04
41 95 0.92
42 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24
Consensus pattern (41 bp):
TTAGCGACGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGCA
Found at i:45379375 original size:40 final size:39
Alignment explanation
Indices: 45379330--45379417 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 39
45379320 TAATGATCAT
* *
45379330 TTTTAGCGGCGCTTTCCT-AAAAGCGCCGCTAATTCTCGA
1 TTTTAGCGG-GATTTCATGAAAAGCGCCGCTAATTCTCGA
* * *
45379369 TCTTTAGCGGTATTTTATGTAAAGCGCCGCTAATTCTCGA
1 T-TTTAGCGGGATTTCATGAAAAGCGCCGCTAATTCTCGA
45379409 TTATTAGCG
1 TT-TTAGCG
45379418 ATGTTTTTTG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
39 6 0.15
40 35 0.85
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (39 bp):
TTTTAGCGGGATTTCATGAAAAGCGCCGCTAATTCTCGA
Found at i:45393653 original size:27 final size:27
Alignment explanation
Indices: 45393615--45393765 Score: 230
Period size: 27 Copynumber: 5.6 Consensus size: 27
45393605 TAAATTGTAC
* *
45393615 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
45393642 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
45393669 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
45393696 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* * *
45393724 AGCACTAAGTGTTCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
45393751 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45393766 GACTTAATAT
Statistics
Matches: 116, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 91 0.78
28 25 0.22
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:45393734 original size:82 final size:81
Alignment explanation
Indices: 45393615--45393765 Score: 239
Period size: 82 Copynumber: 1.9 Consensus size: 81
45393605 TAAATTGTAC
*
45393615 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTG
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTG
45393680 TGCGAGTTGACTATGT
66 TGCGAGTTGACTATGT
* * * * *
45393696 AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTTCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAAT-TGAATATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGT
45393761 GTGCG
65 GTGCG
45393766 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
81 17 0.27
82 46 0.73
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (81 bp):
AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTG
TGCGAGTTGACTATGT
Found at i:45393742 original size:55 final size:54
Alignment explanation
Indices: 45393615--45393765 Score: 230
Period size: 55 Copynumber: 2.8 Consensus size: 54
45393605 TAAATTGTAC
*
45393615 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGT
* *
45393669 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGT-TGACTATGT
* * * *
45393724 AGCACTAAGTGTTCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
45393766 GACTTAATAT
Statistics
Matches: 89, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
54 43 0.48
55 46 0.52
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:45399227 original size:27 final size:27
Alignment explanation
Indices: 45399190--45399368 Score: 277
Period size: 27 Copynumber: 6.6 Consensus size: 27
45399180 TAAATTGTGC
* *
45399190 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
45399217 AGCACTAAGTGTGCAAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
45399244 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
45399272 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
45399299 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
45399327 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
45399354 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45399369 GACTTAATAT
Statistics
Matches: 143, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
27 90 0.63
28 53 0.37
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:45399282 original size:55 final size:55
Alignment explanation
Indices: 45399190--45399368 Score: 279
Period size: 55 Copynumber: 3.3 Consensus size: 55
45399180 TAAATTGTGC
* *
45399190 AGCACTAAGTGTGCGA-ATTGAATATGTAGCACTAAGTGTGCAAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
45399244 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * * *
45399299 AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
45399354 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45399369 GACTTAATAT
Statistics
Matches: 116, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
54 16 0.14
55 100 0.86
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:45399380 original size:82 final size:82
Alignment explanation
Indices: 45399190--45399368 Score: 279
Period size: 82 Copynumber: 2.2 Consensus size: 82
45399180 TAAATTGTGC
45399190 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCAAGTTGACTATGTAGCACTAAGTG
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCAAGTTGACTATGTAGCACTAAGTG
*
45399255 TGCGAGTTTGACTATGT
66 TGCGAGTTTGACTATAT
* * * *
45399272 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCAAGT-TGACTATGTAGCACTAAGT
*
45399337 GTGCGAG-TTGATTATAT
65 GTGCGAGTTTGACTATAT
*
45399354 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45399369 GACTTAATAT
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
82 64 0.72
83 25 0.28
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCAAGTTGACTATGTAGCACTAAGTG
TGCGAGTTTGACTATAT
Found at i:45413189 original size:659 final size:657
Alignment explanation
Indices: 45411918--45413219 Score: 2257
Period size: 659 Copynumber: 2.0 Consensus size: 657
45411908 CTTCTTACTT
45411918 CCTTATTTCTACCCATGGCTTGTCAGACTTGGTTTTCTGGGTCTGACCATCACCATTCTTTGTTG
1 CCTTATTTCTACCCATGGCTTGTCAGACTTGGTTTTCTGGGTCTGACCATCACCATTCTTTGTTG
* * *
45411983 GCTTGTCTTTTTCTTCCCTACCATTGCCCTTGGGTTTGAATTTGGACTTAGAGGTCTCATGATTA
66 CCTTGTCTTTGTCTTCCCCACCATTGCCCTTGGGTTTGAATTTGGACTTAGAGGTCTCATGATTA
* * *
45412048 TCAGACTTTCTTCCTCTAAAGTCAAAGAATGTCTCAAACATGGCCATAGCTACAGTAAGTTTAGT
131 TCAGAATTTCTTCCCCTAAAGTCAAAGAATGTCACAAACATGGCCATAGCTACAGTAAGTTTAGT
* *
45412113 GATACCTTGTCGTCACAACTCTTATTTTTCCCACAATTAAGTCCATTTTAATCCAGTAGAATGCT
196 GATACCTTGTCGTCACAACTCTTATTTTGCCCACAATTAAGTCCATTTTAAACCAGTAGAATGCT
*
45412178 TCTTATTCATTCAAATTAGAGATCTGAAGCATCATTTCACTAAACTCTCAAACATACTCTTGAAT
261 TCTTATTCATTCAAATTAGAGATCTGAAGCATCAATTCACTAAACTCTCAAACATACTCTTGAAT
*
45412243 AATGCCTTGTGGCGTCAGCCAATGCAACTTAGCCCGAGCCTCCTTCTCGGCATACTATGAGGAAA
326 AATGCCTTGTGGCGTAAGCCAATGCAACTTAGCCCGAGCCTCCTTCTCGGCATACTATGAGGAAA
*
45412308 ATTGCTTCATCAACTCTCTTTGGAACTCCTACCAAGTCCTATTAGTCATCCCACCATGTTTTTTA
391 ATTGCTTCATCAACTCTCTTTGGAACTCCTACCAAGTCCTATTAGTCATCCCACCATGTTTGTTA
* *
45412373 TTCGTGGACTTACGAGGCCACAACAAGAGAGTAACATCAATAAAATTAATTGAAGTAGTGTTTAC
456 TTCGTGGACTTAAGAGGCCACAACAAGAGAGTAACATCAATAAAATTAATTAAAGTAGTGTTTAC
* *
45412438 CTTAGTAACATCATCCTCAATACCTGTCACTCAAAAGTGTTGCTCTATTTCTCACAAGAAGTTGT
521 CTTAGTAACATCATCCTCAATACCTATCACTCAAAAGTATTGCTCTATTTCTCACAAGAAGTTGT
*
45412503 CCACTTCCCTCGTGGACCTTTCCCTCTTAAACTTCTCCAGTTTGGAAACATCC-TCTTAAACTTC
586 CCACTTCCCTCGTGGACCTTGCCCTCTTAAACTTCTCCAGTTTGGAAACATCCATCTTAAACTTC
45412567 TCGCGGA
651 TCGCGGA
* * *
45412574 CCTTATTTTTACCCCATGGCTTGTCAGGCTTGGTTTTCTGGGTCTTACCATCACCATTCTTTGTT
1 CCTTATTTCTA-CCCATGGCTTGTCAGACTTGGTTTTCTGGGTCTGACCATCACCATTCTTTGTT
*
45412639 GCCTTGTCTTTGTCTTCCCCACCATTTCCCTTGGGTTTGAATTTGGACTTAGAGGTCTCATGATT
65 GCCTTGTCTTTGTCTTCCCCACCATTGCCCTTGGGTTTGAATTTGGACTTAGAGGTCTCATGATT
* * *
45412704 ATTAGAATTTCTTCCCCTAAAGTCAAAGAATGTCACAACCTTGGCCATAGCTACAGTAAGTTTAG
130 ATCAGAATTTCTTCCCCTAAAGTCAAAGAATGTCACAAACATGGCCATAGCTACAGTAAGTTTAG
* *
45412769 TGATACCTTGTCGTCACAACTCTTATTTTGCCCACGACTTAAGTCTATTTTCAAACCAGTAGAAT
195 TGATACCTTGTCGTCACAACTCTTATTTTGCCCAC-AATTAAGTCCATTTT-AAACCAGTAGAAT
45412834 GCTTCTT-TATCATTCAAATTAGAGATCTGAAGCATCAATTCACTAAACTCTCAAACATACTCTT
258 GCTTCTTAT-TCATTCAAATTAGAGATCTGAAGCATCAATTCACTAAACTCTCAAACATACTCTT
*
45412898 GAATAATGCCTTGTGGCGTAAGCCAATGTAACTTAGCCCGAGCCTCCTTCTCGGCATACTATGAG
322 GAATAATGCCTTGTGGCGTAAGCCAATGCAACTTAGCCCGAGCCTCCTTCTCGGCATACTATGAG
* *
45412963 GAAAATTGCTTCATCAAGTCTCTTTGGAACTCCTAGCAAGTCCTATTAGTCATCCCACCATGTTT
387 GAAAATTGCTTCATCAACTCTCTTTGGAACTCCTACCAAGTCCTATTAGTCATCCCACCATGTTT
* *
45413028 GTTATTCGTGGACTTAAGAGGTCACAACAAGAGAGTAACATCAGTAAAATTAATTAAAGTAGTGT
452 GTTATTCGTGGACTTAAGAGGCCACAACAAGAGAGTAACATCAATAAAATTAATTAAAGTAGTGT
* *
45413093 TTACCTTAGTAACATCATCCTGAATACCTATCACTTAAAAGTATTGCTCTATTTCTCACAAGAAG
517 TTACCTTAGTAACATCATCCTCAATACCTATCACTCAAAAGTATTGCTCTATTTCTCACAAGAAG
*
45413158 TTGTCCACTTCCCTCGTGGACCTTGCCCTCTTAAACTTCTCCGGTTTGGAAACATCCATCTT
582 TTGTCCACTTCCCTCGTGGACCTTGCCCTCTTAAACTTCTCCAGTTTGGAAACATCCATCTT
45413220 GTGTTGCTTT
Statistics
Matches: 608, Mismatches: 33, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
656 10 0.02
657 205 0.34
658 14 0.02
659 375 0.62
660 4 0.01
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (657 bp):
CCTTATTTCTACCCATGGCTTGTCAGACTTGGTTTTCTGGGTCTGACCATCACCATTCTTTGTTG
CCTTGTCTTTGTCTTCCCCACCATTGCCCTTGGGTTTGAATTTGGACTTAGAGGTCTCATGATTA
TCAGAATTTCTTCCCCTAAAGTCAAAGAATGTCACAAACATGGCCATAGCTACAGTAAGTTTAGT
GATACCTTGTCGTCACAACTCTTATTTTGCCCACAATTAAGTCCATTTTAAACCAGTAGAATGCT
TCTTATTCATTCAAATTAGAGATCTGAAGCATCAATTCACTAAACTCTCAAACATACTCTTGAAT
AATGCCTTGTGGCGTAAGCCAATGCAACTTAGCCCGAGCCTCCTTCTCGGCATACTATGAGGAAA
ATTGCTTCATCAACTCTCTTTGGAACTCCTACCAAGTCCTATTAGTCATCCCACCATGTTTGTTA
TTCGTGGACTTAAGAGGCCACAACAAGAGAGTAACATCAATAAAATTAATTAAAGTAGTGTTTAC
CTTAGTAACATCATCCTCAATACCTATCACTCAAAAGTATTGCTCTATTTCTCACAAGAAGTTGT
CCACTTCCCTCGTGGACCTTGCCCTCTTAAACTTCTCCAGTTTGGAAACATCCATCTTAAACTTC
TCGCGGA
Found at i:45435433 original size:49 final size:49
Alignment explanation
Indices: 45435365--45435465 Score: 148
Period size: 49 Copynumber: 2.1 Consensus size: 49
45435355 TCTTATAAGG
* *
45435365 AACATATGGAAAGCATTAAACATGTTATATTCTTTCCAAAAATAATTAT
1 AACATATGGAAAGCATTAAAAATGTTATATTCTTTCCAAAAAGAATTAT
* * * *
45435414 AACATATTGACAGTATTAAAAATGTTATATTCTTTTCAAAAAGAATTAT
1 AACATATGGAAAGCATTAAAAATGTTATATTCTTTCCAAAAAGAATTAT
45435463 AAC
1 AAC
45435466 TACCATGTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.46, C:0.11, G:0.08, T:0.36
Consensus pattern (49 bp):
AACATATGGAAAGCATTAAAAATGTTATATTCTTTCCAAAAAGAATTAT
Found at i:45442888 original size:187 final size:186
Alignment explanation
Indices: 45442573--45442942 Score: 587
Period size: 187 Copynumber: 2.0 Consensus size: 186
45442563 TCTCTCAATT
45442573 GGAATAACCAAATCTTATCACTTGCGAAAGAGAAATAAAATGAATACTTCGATATTATAAAAGAA
1 GGAATAACCAAATCTTATCACTTGCGAAAGAGAAATAAAATGAATACTTCGATATTATAAAAGAA
* *
45442638 CTATTAGATCGAAATCAATTCCAAAAGGAAAGAAGCATTTTTGGAAAACAAAGGAAAACTTAATC
66 CTATTAGATCAAAATCAATGCCAAAAGGAAAGAAGCATTTTTGGAAAACAAAGGAAAACTTAATC
45442703 TAAATACTACTCAAAAACTTCGAGGGGGTTTTGGATGCGTCTAAGAAAACTTAGATC
131 TAAATACTACTCAAAAACTTCG-GGGGGTTTTGGATGCGTCTAAGAAAACTTAGATC
* * * * *
45442760 GGAATAATCAAATCTTATGACTTGCGAAAGAGAAATAAATTGAATACTTTGATATTATAAAATAA
1 GGAATAACCAAATCTTATCACTTGCGAAAGAGAAATAAAATGAATACTTCGATATTATAAAAGAA
* * * * *
45442825 CTCTTGGATCAAAATCGATGCCAATAGGAAAGAAGGATTTTTGGAAAACAAAGGAAAACTTAATC
66 CTATTAGATCAAAATCAATGCCAAAAGGAAAGAAGCATTTTTGGAAAACAAAGGAAAACTTAATC
** * *
45442890 TAAATACTACTCATCAACTTCGGGGGGTTTTGGATGTGTCTAAGAAGACTTAG
131 TAAATACTACTCAAAAACTTCGGGGGGTTTTGGATGCGTCTAAGAAAACTTAG
45442943 TTACATTAAA
Statistics
Matches: 167, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
186 29 0.17
187 138 0.83
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (186 bp):
GGAATAACCAAATCTTATCACTTGCGAAAGAGAAATAAAATGAATACTTCGATATTATAAAAGAA
CTATTAGATCAAAATCAATGCCAAAAGGAAAGAAGCATTTTTGGAAAACAAAGGAAAACTTAATC
TAAATACTACTCAAAAACTTCGGGGGGTTTTGGATGCGTCTAAGAAAACTTAGATC
Found at i:45444402 original size:18 final size:19
Alignment explanation
Indices: 45444381--45444426 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
45444371 ATAATAATTT
45444381 AATTTCATAT-TGAATT-AA
1 AATTTCATATAT-AATTAAA
**
45444399 AATTTTTTATATAATTAAA
1 AATTTCATATATAATTAAA
45444418 AATTTCATA
1 AATTTCATA
45444427 ATTCAATGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (19 bp):
AATTTCATATATAATTAAA
Found at i:45445857 original size:28 final size:28
Alignment explanation
Indices: 45445780--45445861 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
45445770 CAATAAAGTT
* *
45445780 TTCCTTTAACAGAGGTTGCAACAAAGAC
1 TTCCTTTAACAGAGATTGCCACAAAGAC
* **
45445808 TTCCTTTAACAAAGATCACCACAAAG-C
1 TTCCTTTAACAGAGATTGCCACAAAGAC
*
45445835 ATTCCTTTAATAGAGATTGCCACAAAG
1 -TTCCTTTAACAGAGATTGCCACAAAG
45445862 GCTCACTTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.98
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (28 bp):
TTCCTTTAACAGAGATTGCCACAAAGAC
Found at i:45447890 original size:9 final size:9
Alignment explanation
Indices: 45447891--45447963 Score: 103
Period size: 9 Copynumber: 8.2 Consensus size: 9
45447881 TCGGGTATTT
45447891 TTCG-GTAA
1 TTCGGGTAA
*
45447899 TTCGGTTAA
1 TTCGGGTAA
*
45447908 TTCGGTTAA
1 TTCGGGTAA
*
45447917 TTCGGTTAA
1 TTCGGGTAA
45447926 TTCGGGTAA
1 TTCGGGTAA
*
45447935 TCCGGGTAA
1 TTCGGGTAA
45447944 TTCGGGTAA
1 TTCGGGTAA
45447953 TTCGGGTAA
1 TTCGGGTAA
45447962 TT
1 TT
45447964 TTTAACCAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
8 4 0.07
9 56 0.93
ACGTcount: A:0.22, C:0.12, G:0.27, T:0.38
Consensus pattern (9 bp):
TTCGGGTAA
Done.