Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 155 of 230
Found at i:45781296 original size:12 final size:13
Alignment explanation
Indices: 45781272--45781300 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
45781262 GGGCTATAAC
45781272 TATTGCATTTATT
1 TATTGCATTTATT
45781285 TATTGC-TTTATT
1 TATTGCATTTATT
45781297 TATT
1 TATT
45781301 CTTGTAAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:45787956 original size:24 final size:24
Alignment explanation
Indices: 45787922--45787975 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
45787912 CGATATCTAT
* *
45787922 GGGATCTTCTTCTTCTTCTTTTTC
1 GGGATCATCTTCTTCTTCTTCTTC
45787946 GGGATCATCTTCTTCTTCTTCTTC
1 GGGATCATCTTCTTCTTCTTCTTC
45787970 GGGATC
1 GGGATC
45787976 CTCACTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.07, C:0.26, G:0.17, T:0.50
Consensus pattern (24 bp):
GGGATCATCTTCTTCTTCTTCTTC
Found at i:45788901 original size:25 final size:26
Alignment explanation
Indices: 45788865--45788918 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
45788855 TGATTAGTAT
*
45788865 AAAATATTAATAATTCAAT-AAATTG
1 AAAATATTAATAATTAAATAAAATTG
45788890 AAAAT-TTAAATAATTAAATAAAATTG
1 AAAATATT-AATAATTAAATAAAATTG
45788916 AAA
1 AAA
45788919 TTAGGAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 2 0.08
25 15 0.58
26 9 0.35
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (26 bp):
AAAATATTAATAATTAAATAAAATTG
Found at i:45796355 original size:19 final size:20
Alignment explanation
Indices: 45796319--45796356 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
45796309 ACCTAACACA
*
45796319 AATTAAATTTAAGCCATATT
1 AATTAAATTTAAGACATATT
*
45796339 AATTAATTTTAA-ACATAT
1 AATTAAATTTAAGACATAT
45796357 AAACATCACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (20 bp):
AATTAAATTTAAGACATATT
Found at i:45809250 original size:24 final size:24
Alignment explanation
Indices: 45809223--45809271 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
45809213 AGATCCGAAG
* *
45809223 GCATTTGTGCGAGATACTAATTCC
1 GCATTGGTGCGAGATACTAAATCC
*
45809247 GCATTGGTGCGAGTTACTAAATCC
1 GCATTGGTGCGAGATACTAAATCC
45809271 G
1 G
45809272 GGTTAAGTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (24 bp):
GCATTGGTGCGAGATACTAAATCC
Found at i:45809302 original size:40 final size:40
Alignment explanation
Indices: 45809247--45809333 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
45809237 TACTAATTCC
* *
45809247 GCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAG
1 GCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAG
*
45809287 GCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAG
1 GCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAG
45809327 GCATTTG
1 GCATTTG
45809334 AACGAGTAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 41 0.95
41 2 0.05
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (40 bp):
GCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAG
Found at i:45816537 original size:14 final size:14
Alignment explanation
Indices: 45816518--45816559 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
45816508 AGTAGTCTCG
45816518 TTTTTATTTTTTTA
1 TTTTTATTTTTTTA
*
45816532 TTTTTATTTATTTA
1 TTTTTATTTTTTTA
**
45816546 TTTACATTTTTTTA
1 TTTTTATTTTTTTA
45816560 AGAAACGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTTATTTTTTTA
Found at i:45816764 original size:19 final size:20
Alignment explanation
Indices: 45816714--45816753 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
45816704 GGCGGCGCCA
*
45816714 CTGCCGGCGGTCGGAGGCCG
1 CTGCCGGTGGTCGGAGGCCG
45816734 CTGCCGGTGGTCGGAGGCCG
1 CTGCCGGTGGTCGGAGGCCG
45816754 TCGCGGTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.05, C:0.33, G:0.50, T:0.12
Consensus pattern (20 bp):
CTGCCGGTGGTCGGAGGCCG
Found at i:45817516 original size:3 final size:3
Alignment explanation
Indices: 45817503--45817604 Score: 123
Period size: 3 Copynumber: 34.0 Consensus size: 3
45817493 TCACATTTTA
* *
45817503 TAT TGT TAT TAT TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * ** * *
45817551 TAT TAT TAT TAC TAT CAT TGC TAT TAT TAT TAT TAG CAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
45817599 TTT TAT
1 TAT TAT
45817605 ATATCAATTT
Statistics
Matches: 81, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 81 1.00
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:45831232 original size:24 final size:24
Alignment explanation
Indices: 45831178--45831235 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
45831168 ATGTCCCAAA
*
45831178 ATTACAATGGATTGAACCTTGAAG
1 ATTACAGTGGATTGAACCTTGAAG
45831202 ATTACAGTGGATTGAACCTTGAAG
1 ATTACAGTGGATTGAACCTTGAAG
45831226 ATTACAGTGG
1 ATTACAGTGG
45831236 GGGCAATCCG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (24 bp):
ATTACAGTGGATTGAACCTTGAAG
Found at i:45831597 original size:46 final size:46
Alignment explanation
Indices: 45831530--45831839 Score: 269
Period size: 51 Copynumber: 6.4 Consensus size: 46
45831520 GCAGTGGAGC
* * * *
45831530 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTCGCAGT
1 AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGT
* * *
45831576 AGATTACAGCTGAAGGGAGCGAATCTCATTTCCTTGGCATTGCAGTGGAAT
1 AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTTGCA---G--T
* * * *
45831627 AGATTAAAGCTGAAGGCAACAAATCTTATTTCCTTGGTGTTGCAGT
1 AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGT
*
45831673 AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCATTGCAGTGGAAT
1 AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTTGCA---G--T
* * * *
45831724 AGATTAAAGCTGAAGGCAGCGAATCTCACTTCCTTAGCATTGTAGTGGAAT
1 AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGC---GT--TGCAGT
* * ** * * * *
45831775 AGATTAACGCTGAAGGCAGCGTATCTTTTTTCCCTAGCGTTACACT
1 AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGT
45831821 AGATTAAAGCTGAAGGCAG
1 AGATTAAAGCTGAAGGCAG
45831840 GAAAACTTAT
Statistics
Matches: 216, Mismatches: 33, Indels: 30
0.77 0.12 0.11
Matches are distributed among these distances:
46 99 0.46
48 3 0.01
49 2 0.01
51 108 0.50
54 1 0.00
56 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (46 bp):
AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGT
Found at i:45831652 original size:51 final size:51
Alignment explanation
Indices: 45831518--45831800 Score: 325
Period size: 51 Copynumber: 5.7 Consensus size: 51
45831508 ACCGTTAAAG
** * * * *
45831518 TTGCAGTGGAGCAGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCG
1 TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCA
* * *
45831569 TCGCA---G--TAGATTACAGCTGAAGGGAGCGAATCTCATTTCCTTGGCA
1 TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCA
* * * **
45831615 TTGCAGTGGAATAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTTGGTG
1 TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCA
45831666 TTGCA---G--TAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCA
1 TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCA
* *
45831712 TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCTCACTTCCTTAGCA
1 TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCA
* * *
45831763 TTGTAGTGGAATAGATTAACGCTGAAGGCAGCGTATCT
1 TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCT
45831801 TTTTTCCCTA
Statistics
Matches: 197, Mismatches: 25, Indels: 20
0.81 0.10 0.08
Matches are distributed among these distances:
46 78 0.40
48 2 0.01
49 2 0.01
51 115 0.58
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (51 bp):
TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCA
Found at i:45831749 original size:97 final size:97
Alignment explanation
Indices: 45831518--45831758 Score: 374
Period size: 97 Copynumber: 2.5 Consensus size: 97
45831508 ACCGTTAAAG
** * * *
45831518 TTGCAGTGGAGCAGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTCGCAGTAGATTAC
1 TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCGCAGTAGATTAA
*
45831583 AGCTGAAGGGAGCGAATCTCATTTCCTTGGCA
66 AGCTGAAGGCAGCGAATCTCATTTCCTTGGCA
* * * *
45831615 TTGCAGTGGAATAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTTGGTGTTGCAGTAGATTAA
1 TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCGCAGTAGATTAA
45831680 AGCTGAAGGCAGCGAATCTCATTTCCTTGGCA
66 AGCTGAAGGCAGCGAATCTCATTTCCTTGGCA
* *
45831712 TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCTCACTTCCTT
1 TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTT
45831759 AGCATTGTAG
Statistics
Matches: 130, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
97 130 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (97 bp):
TTGCAGTGGAATAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCGCAGTAGATTAA
AGCTGAAGGCAGCGAATCTCATTTCCTTGGCA
Found at i:45831852 original size:148 final size:148
Alignment explanation
Indices: 45831530--45831853 Score: 390
Period size: 148 Copynumber: 2.2 Consensus size: 148
45831520 GCAGTGGAGC
* * * * * * *
45831530 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTCGCA---G--TAGATTACAGCTGAA
1 AGATTAAAGCTGAAGGCAGCGAAACTCATTTCCTTGGCATTGCAGTGGAATAGATTAAAGCTGAA
* * *
45831590 GGGAGCGAATCTCATTTCCTTGGCATTGCAGTGGAATAGATTAAAGCTGAAGGCAACAAATCTTA
66 GGCAGCGAATCTCACTTCCTTAGCATTGCAGTGGAATAGATTAAAGCTGAAGGCAACAAATCTTA
* * * * *
45831655 TTTCCTTGGTGTTGCAGT
131 TTTCCCTAGCGTTACACT
*
45831673 AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCATTGCAGTGGAATAGATTAAAGCTGAA
1 AGATTAAAGCTGAAGGCAGCGAAACTCATTTCCTTGGCATTGCAGTGGAATAGATTAAAGCTGAA
* * * ** *
45831738 GGCAGCGAATCTCACTTCCTTAGCATTGTAGTGGAATAGATTAACGCTGAAGGCAGCGTATCTTT
66 GGCAGCGAATCTCACTTCCTTAGCATTGCAGTGGAATAGATTAAAGCTGAAGGCAACAAATCTTA
45831803 TTTCCCTAGCGTTACACT
131 TTTCCCTAGCGTTACACT
*
45831821 AGATTAAAGCTGAAGGCAG-GAAAACTTATTTCC
1 AGATTAAAGCTGAAGGCAGCG-AAACTCATTTCC
45831854 CTAGCGTTGC
Statistics
Matches: 153, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
143 39 0.25
146 1 0.01
147 1 0.01
148 112 0.73
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (148 bp):
AGATTAAAGCTGAAGGCAGCGAAACTCATTTCCTTGGCATTGCAGTGGAATAGATTAAAGCTGAA
GGCAGCGAATCTCACTTCCTTAGCATTGCAGTGGAATAGATTAAAGCTGAAGGCAACAAATCTTA
TTTCCCTAGCGTTACACT
Found at i:45831853 original size:46 final size:46
Alignment explanation
Indices: 45831530--45831861 Score: 146
Period size: 46 Copynumber: 6.9 Consensus size: 46
45831520 GCAGTGGAGC
* * * ** *
45831530 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTGGCGTCGCAGT
1 AGATTAAAGCTGAAGGCAGCGAAACTTATTTCCCTAGCGTTACACT
* * * * * * * * *
45831576 AGATTACAGCTGAAGGGAGCGAATCTCATTTCCTTGGCATTGCAGTGGAAT
1 AGATTAAAGCTGAAGGCAGCGAAACTTATTTCCCTAGCGTT--A---CACT
* * * * * *
45831627 AGATTAAAGCTGAAGGCAAC-AAATCTTATTTCCTTGGTGTTGCAGT
1 AGATTAAAGCTGAAGGCAGCGAAA-CTTATTTCCCTAGCGTTACACT
* * * * * * *
45831673 AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCATTGCAGTGGAAT
1 AGATTAAAGCTGAAGGCAGCGAAACTTATTTCCCTAGCGTT--A---CACT
* * * * ** *
45831724 AGATTAAAGCTGAAGGCAGCGAATCTCACTTCCTTAGCATTGTAGTGGAAT
1 AGATTAAAGCTGAAGGCAGCGAAACTTATTTCCCTAGC---GT--TACACT
* * * *
45831775 AGATTAACGCTGAAGGCAGCGTATCTTTTTTCCCTAGCGTTACACT
1 AGATTAAAGCTGAAGGCAGCGAAACTTATTTCCCTAGCGTTACACT
45831821 AGATTAAAGCTGAAGGCAG-GAAAACTTATTTCCCTAGCGTT
1 AGATTAAAGCTGAAGGCAGCG-AAACTTATTTCCCTAGCGTT
45831862 GCAATGGTGT
Statistics
Matches: 224, Mismatches: 44, Indels: 36
0.74 0.14 0.12
Matches are distributed among these distances:
45 1 0.00
46 108 0.48
47 2 0.01
48 2 0.01
50 2 0.01
51 107 0.48
54 1 0.00
56 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (46 bp):
AGATTAAAGCTGAAGGCAGCGAAACTTATTTCCCTAGCGTTACACT
Found at i:45834197 original size:25 final size:25
Alignment explanation
Indices: 45834169--45834247 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
45834159 CTAATGGCCG
45834169 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
45834194 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
45834216 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
45834241 ATGTGAT
1 ATGTGAT
45834248 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:45834219 original size:47 final size:47
Alignment explanation
Indices: 45834153--45834710 Score: 920
Period size: 47 Copynumber: 12.1 Consensus size: 47
45834143 GAAATGATAG
45834153 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45834200 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
45834247 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45834294 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
**
45834341 TAAGG---AATAACCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
45834385 TAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45834432 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45834479 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45834526 TAAGGCCTAATGGCCGATGTGATGAATGTG--A----A-ATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45834566 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
45834613 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * *
45834660 CGGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
45834707 TAAG
1 TAAG
45834711 TCCCGAAGGG
Statistics
Matches: 479, Mismatches: 22, Indels: 20
0.92 0.04 0.04
Matches are distributed among these distances:
40 38 0.08
41 1 0.00
42 1 0.00
44 42 0.09
45 1 0.00
46 1 0.00
47 395 0.82
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:45834484 original size:185 final size:186
Alignment explanation
Indices: 45834166--45834710 Score: 890
Period size: 185 Copynumber: 3.0 Consensus size: 186
45834156 GGCCTAATGG
45834166 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
45834231 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATA
66 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
45834296 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-AATAA
131 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCAATAA
*
45834351 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
45834416 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
66 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
**
45834481 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
131 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-C-AATAA
45834539 CCGATGTGATGAATGTG--A----A-ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* **
45834597 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACG
66 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* * * * * * *
45834662 GGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGCATAAATGTGATAAG
131 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
45834711 TCCCGAAGGG
Statistics
Matches: 342, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
181 142 0.42
182 1 0.00
185 178 0.52
186 1 0.00
188 20 0.06
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (186 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCAATAA
Found at i:45834573 original size:40 final size:40
Alignment explanation
Indices: 45834518--45834645 Score: 184
Period size: 40 Copynumber: 3.0 Consensus size: 40
45834508 GAAAGTGTAT
45834518 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
45834558 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG--A----A
*
45834604 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 -ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
45834645 A
1 A
45834646 GTGTATATAT
Statistics
Matches: 80, Mismatches: 1, Indels: 14
0.84 0.01 0.15
Matches are distributed among these distances:
40 39 0.49
41 1 0.01
42 1 0.01
45 1 0.01
46 1 0.01
47 37 0.46
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (40 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:45834577 original size:87 final size:87
Alignment explanation
Indices: 45834471--45834645 Score: 341
Period size: 87 Copynumber: 2.0 Consensus size: 87
45834461 GAAAGTGTAT
45834471 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
45834536 TGGCCGATGTGATGAATGTGAA
66 TAGCCGATGTGATGAATGTGAA
45834558 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
45834623 TAGCCGATGTGATGAATGTGAA
66 TAGCCGATGTGATGAATGTGAA
45834645 A
1 A
45834646 GTGTATATAT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (87 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TAGCCGATGTGATGAATGTGAA
Found at i:45834885 original size:37 final size:37
Alignment explanation
Indices: 45834829--45834907 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
45834819 CCGAGCTCTA
* *
45834829 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
* *
45834866 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45834903 AAGAC
1 AAGAC
45834908 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45837215 original size:10 final size:9
Alignment explanation
Indices: 45837196--45837221 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
45837186 TAGTAACTCG
45837196 TTTTTATTT
1 TTTTTATTT
45837205 TTTTTATTT
1 TTTTTATTT
45837214 TTTTTATT
1 TTTTTATT
45837222 AATTTACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTATTT
Found at i:45842330 original size:24 final size:24
Alignment explanation
Indices: 45842303--45842360 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
45842293 ATGTCCCAAA
45842303 ATTACAATGGATTGAACCTTGAAG
1 ATTACAATGGATTGAACCTTGAAG
*
45842327 ATTACAGTGGATTGAACCTTGAAG
1 ATTACAATGGATTGAACCTTGAAG
45842351 ATTACAATGG
1 ATTACAATGG
45842361 GGGCAATCCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29
Consensus pattern (24 bp):
ATTACAATGGATTGAACCTTGAAG
Found at i:45842812 original size:97 final size:97
Alignment explanation
Indices: 45842657--45843381 Score: 1108
Period size: 97 Copynumber: 7.5 Consensus size: 97
45842647 AGTGGAGCAA
* * * *
45842657 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAATAGATTAAAGTTGAAGGTAGCG
1 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCG
45842722 AATCTCATTTCCTTGGCGTTGCAGTGGAATAG
66 AATCTCATTTCCTTGGCGTTGCAGTGGAATAG
* * *
45842754 ATTCAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTACAGCTGAAGGCAGTG
1 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCG
* *
45842819 AATCTCATTTCCTTGGCATTGCAGTGGAATAT
66 AATCTCATTTCCTTGGCGTTGCAGTGGAATAG
* *
45842851 ATTAAAGCTGAAGGTAGCAAATCTTATTTTCCTGGCGTTGCAGTAGATTAAAGCTGAAGGCCAGC
1 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGG-CAGC
45842916 GAATCTCATTTCCTTGGCGTTGCAGTGGAATAG
65 GAATCTCATTTCCTTGGCGTTGCAGTGGAATAG
* * * * *
45842949 ATTAAAGTTGAAGGTAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTACAGCTGAAAGCAGTG
1 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCG
*
45843014 AATCTCATTTCCTTGGCATTGCAGTGGAATAG
66 AATCTCATTTCCTTGGCGTTGCAGTGGAATAG
* * *
45843046 ATTAAAGCTAAAGGTAGCAAATCTTATTTCCCTGGCGTTGCAGTAAATTAAAGCTGAAGGCCAGC
1 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGG-CAGC
*
45843111 TAATCTCATTTCCTTGGCGTTGCAGTGGAATAG
65 GAATCTCATTTCCTTGGCGTTGCAGTGGAATAG
* * * * *
45843144 ATTAATGTTGAAGGCAGCAAATCTTATTTCCCTGGCATTGCAGTAGATTACAGCTGAAGGCAGTG
1 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCG
* * *
45843209 AATCTCGTTTCCTTGGCATTGCAGTGGAATAA
66 AATCTCATTTCCTTGGCGTTGCAGTGGAATAG
*
45843241 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGGTAGCG
1 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCG
* * * *
45843306 AATCTTATTTCCCTAGCGTTGCAGTGGAACAG
66 AATCTCATTTCCTTGGCGTTGCAGTGGAATAG
* *
45843338 ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTTGCAGT
1 ATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGT
45843382 GGAACAGATT
Statistics
Matches: 569, Mismatches: 57, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
97 392 0.69
98 177 0.31
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (97 bp):
ATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCG
AATCTCATTTCCTTGGCGTTGCAGTGGAATAG
Found at i:45842977 original size:195 final size:194
Alignment explanation
Indices: 45842646--45843381 Score: 1193
Period size: 195 Copynumber: 3.8 Consensus size: 194
45842636 GCTAAAGTTA
** * * *
45842646 CAGTGGAGCAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAATAGATTAAAGT
1 CAGTGGAATAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGC
* *
45842711 TGAAGGTAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTCAAGCTGAAGGCAGCAAAT
66 TGAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAAT
45842776 CTTATTTCCCTGGCGTTGCAGTAGATTACAGCTGAAGGCAGTGAATCTCATTTCCTTGGCATTG
131 CTTATTTCCCTGGCGTTGCAGTAGATTACAGCTGAAGGCAGTGAATCTCATTTCCTTGGCATTG
* * *
45842840 CAGTGGAATATATTAAAGCTGAAGGTAGCAAATCTTATTTTCCTGGCGTTGCAGTAGATTAAAGC
1 CAGTGGAATAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGC
* *
45842905 TGAAGGCCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTAAAGTTGAAGGTAGCAAA
66 TGAAGG-CAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAA
*
45842970 TCTTATTTCCCTGGCGTTGCAGTAGATTACAGCTGAAAGCAGTGAATCTCATTTCCTTGGCATTG
130 TCTTATTTCCCTGGCGTTGCAGTAGATTACAGCTGAAGGCAGTGAATCTCATTTCCTTGGCATTG
* * * *
45843035 CAGTGGAATAGATTAAAGCTAAAGGTAGCAAATCTTATTTCCCTGGCGTTGCAGTAAATTAAAGC
1 CAGTGGAATAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGC
* * *
45843100 TGAAGGCCAGCTAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTAATGTTGAAGGCAGCAAA
66 TGAAGG-CAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAA
* *
45843165 TCTTATTTCCCTGGCATTGCAGTAGATTACAGCTGAAGGCAGTGAATCTCGTTTCCTTGGCATTG
130 TCTTATTTCCCTGGCGTTGCAGTAGATTACAGCTGAAGGCAGTGAATCTCATTTCCTTGGCATTG
45843230 CAGTGGAATAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGC
1 CAGTGGAATAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGC
* * * * * *
45843295 TGAAGGTAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAT
66 TGAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAAT
*
45843360 CTTATTTCCCTAGCGTTGCAGT
131 CTTATTTCCCTGGCGTTGCAGT
45843382 GGAACAGATT
Statistics
Matches: 503, Mismatches: 38, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
194 133 0.26
195 370 0.74
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (194 bp):
CAGTGGAATAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGC
TGAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAAT
CTTATTTCCCTGGCGTTGCAGTAGATTACAGCTGAAGGCAGTGAATCTCATTTCCTTGGCATTG
Found at i:45843214 original size:292 final size:292
Alignment explanation
Indices: 45842646--45843381 Score: 1125
Period size: 292 Copynumber: 2.5 Consensus size: 292
45842636 GCTAAAGTTA
** * * *
45842646 CAGTGGAGCAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAATAGATTAAAGT
1 CAGTGGAATAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGC
*
45842711 TGAAGGTAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTCAAGCTGAAGGCAGCAAAT
66 TGAAGGTAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAAT
* *
45842776 CTTATTTCCCTGGCGTTGCAGTAGATTACAGCTGAAGGCAGTGAATCTCATTTCCTTGGCATTGC
131 CTTATTTCCCTGGCGTTGCAGTAAATTAAAGCTGAAGGCAGTGAATCTCATTTCCTTGGCATTGC
* * * *
45842841 AGTGGAATATATTAAAGCTGAAGGTAGCAAATCTTATTTTCCTGGCGTTGCAGTAGATTAAAGCT
196 AGTGGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATTGCAGTAGATTAAAGCT
*
45842906 GAAGGCCAGCGAATCTCATTTCCTTGGCGTTG
261 GAAGGCCAGCGAATCTCATTTCCTTGGCATTG
* * * *
45842938 CAGTGGAATAGATTAAAGTTGAAGGTAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTACAGC
1 CAGTGGAATAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGC
* * * * * *
45843003 TGAAAGCAGTGAATCTCATTTCCTTGGCATTGCAGTGGAATAGATTAAAGCTAAAGGTAGCAAAT
66 TGAAGGTAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAAT
*
45843068 CTTATTTCCCTGGCGTTGCAGTAAATTAAAGCTGAAGGCCAGCT-AATCTCATTTCCTTGGCGTT
131 CTTATTTCCCTGGCGTTGCAGTAAATTAAAGCTGAAGG-CAG-TGAATCTCATTTCCTTGGCATT
* * *
45843132 GCAGTGGAATAGATTAATGTTGAAGGCAGCAAATCTTATTTCCCTGGCATTGCAGTAGATTACAG
194 GCAGTGGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATTGCAGTAGATTAAAG
* *
45843197 CTGAAGG-CAGTGAATCTCGTTTCCTTGGCATTG
259 CTGAAGGCCAGCGAATCTCATTTCCTTGGCATTG
45843230 CAGTGGAATAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGC
1 CAGTGGAATAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGC
* * * * *
45843295 TGAAGGTAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAT
66 TGAAGGTAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAAT
*
45843360 CTTATTTCCCTAGCGTTGCAGT
131 CTTATTTCCCTGGCGTTGCAGT
45843382 GGAACAGATT
Statistics
Matches: 397, Mismatches: 45, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
292 309 0.78
293 87 0.22
294 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (292 bp):
CAGTGGAATAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGC
TGAAGGTAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAATAGATTAAAGCTGAAGGCAGCAAAT
CTTATTTCCCTGGCGTTGCAGTAAATTAAAGCTGAAGGCAGTGAATCTCATTTCCTTGGCATTGC
AGTGGAATAGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCATTGCAGTAGATTAAAGCT
GAAGGCCAGCGAATCTCATTTCCTTGGCATTG
Found at i:45846093 original size:21 final size:20
Alignment explanation
Indices: 45846044--45846099 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
45846034 TTTTCATTTT
45846044 TTTAAA-TTTAAAAATATAA
1 TTTAAATTTTAAAAATATAA
* *
45846063 TCTT-ATTTTTAAAATATTTAA
1 T-TTAAATTTTAAAA-ATATAA
45846084 TTTAAATTTTGAAAAA
1 TTTAAATTTT-AAAAA
45846100 CGTTAAGATC
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
19 2 0.07
20 11 0.38
21 12 0.41
22 4 0.14
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (20 bp):
TTTAAATTTTAAAAATATAA
Found at i:45860175 original size:31 final size:31
Alignment explanation
Indices: 45860137--45860204 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
45860127 AAGTATATAT
*
45860137 ATGTGATAGGGCCGAGTGGCCAATGTGATGA
1 ATGTGATAGGGCCGAGTGGCCAACGTGATGA
45860168 ATGTGATAGGGCCGAGTGGCCAACGTGATGA
1 ATGTGATAGGGCCGAGTGGCCAACGTGATGA
45860199 ATGTGA
1 ATGTGA
45860205 AAGTGTATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.26, C:0.13, G:0.38, T:0.22
Consensus pattern (31 bp):
ATGTGATAGGGCCGAGTGGCCAACGTGATGA
Found at i:45860238 original size:47 final size:47
Alignment explanation
Indices: 45860168--45860412 Score: 373
Period size: 47 Copynumber: 5.2 Consensus size: 47
45860158 AATGTGATGA
* * *
45860168 ATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * * *
45860215 ATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
45860262 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
45860309 ATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
45860356 ATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAA
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
45860403 ATGTGATAAG
1 ATGTGATAAG
45860413 TCCCGAAGGG
Statistics
Matches: 183, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 183 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
Found at i:45863584 original size:8 final size:7
Alignment explanation
Indices: 45863564--45863600 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
45863554 GAATATAATC
*
45863564 AAATTTC
1 AAATTTG
45863571 AAATTTTG
1 AAA-TTTG
45863579 AAATTTG
1 AAATTTG
45863586 AAATTTG
1 AAATTTG
45863593 AAATTTG
1 AAATTTG
45863600 A
1 A
45863601 TTTCATCGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
7 22 0.79
8 6 0.21
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (7 bp):
AAATTTG
Found at i:45864380 original size:28 final size:28
Alignment explanation
Indices: 45864348--45864403 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
45864338 ATGAAAAGTT
45864348 AGCAAAAGATATGTTAACATAATCATCA
1 AGCAAAAGATATGTTAACATAATCATCA
45864376 AGCAAAAGATATGTTAACATAATCATCA
1 AGCAAAAGATATGTTAACATAATCATCA
45864404 CCCCTCGAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.50, C:0.14, G:0.11, T:0.25
Consensus pattern (28 bp):
AGCAAAAGATATGTTAACATAATCATCA
Found at i:45870076 original size:8 final size:9
Alignment explanation
Indices: 45870063--45870112 Score: 50
Period size: 8 Copynumber: 5.3 Consensus size: 9
45870053 GTAGTTAAAG
45870063 TAAGTTAA-
1 TAAGTTAAT
45870071 TAAGTTAAT
1 TAAGTTAAT
45870080 TAAGTATTAAAT
1 TAAG--TT-AAT
45870092 TAA-TTAAT
1 TAAGTTAAT
45870100 TAATGTTAAT
1 TAA-GTTAAT
45870110 TAA
1 TAA
45870113 ACTTAAAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
8 14 0.39
9 6 0.17
10 8 0.22
11 2 0.06
12 6 0.17
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (9 bp):
TAAGTTAAT
Found at i:45872205 original size:6 final size:6
Alignment explanation
Indices: 45872194--45872248 Score: 110
Period size: 6 Copynumber: 9.2 Consensus size: 6
45872184 AGTTGGGATA
45872194 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
45872242 TTATTT T
1 TTATTT T
45872249 GTCTCCACAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTATTT
Found at i:45874586 original size:191 final size:191
Alignment explanation
Indices: 45874262--45874643 Score: 728
Period size: 191 Copynumber: 2.0 Consensus size: 191
45874252 TCTATTTCTA
* *
45874262 TTTAGAGGCCTAAAAAATGGGCCAAACCTGATGGGCCTTCTAGTATGGCTCAACTATGTAGTGAC
1 TTTAGAGGCCTAAAAAATGGGCCAAACCTGATAGGCCTTCTAGTATGGCTCAACTATGCAGTGAC
* *
45874327 TATGGTAGGCGCCATCCGGGCGAGTGCTGGAGGAGGTTGGGAGCATGTCTGCAATATAGGTCGAT
66 TATGGTAGGCGCCATCCGGACGAGTGCTGGAGGAGGTTGGGAGCATGTCTACAATATAGGTCGAT
45874392 CGAGTATCGTATTAGAGAATGCCTACAACATTCTGATCAGATACAAGCTTCGGTTCTGGGT
131 CGAGTATCGTATTAGAGAATGCCTACAACATTCTGATCAGATACAAGCTTCGGTTCTGGGT
45874453 TTTAGAGGCCTAAAAAATGGGCCAAACCTGATAGGCCTTCTAGTATGGCTCAACTATGCAGTGAC
1 TTTAGAGGCCTAAAAAATGGGCCAAACCTGATAGGCCTTCTAGTATGGCTCAACTATGCAGTGAC
45874518 TATGGTAGGCGCCATCCGGACGAGTGCTGGAGGAGGTTGGGAGCATGTCTACAATATAGGTCGAT
66 TATGGTAGGCGCCATCCGGACGAGTGCTGGAGGAGGTTGGGAGCATGTCTACAATATAGGTCGAT
45874583 CGAGTATCGTATTAGAGAATGCCTACAACATTCTGATCAGATACAAGCTTCGGTTCTGGGT
131 CGAGTATCGTATTAGAGAATGCCTACAACATTCTGATCAGATACAAGCTTCGGTTCTGGGT
45874644 GTTATTTAGC
Statistics
Matches: 187, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
191 187 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (191 bp):
TTTAGAGGCCTAAAAAATGGGCCAAACCTGATAGGCCTTCTAGTATGGCTCAACTATGCAGTGAC
TATGGTAGGCGCCATCCGGACGAGTGCTGGAGGAGGTTGGGAGCATGTCTACAATATAGGTCGAT
CGAGTATCGTATTAGAGAATGCCTACAACATTCTGATCAGATACAAGCTTCGGTTCTGGGT
Found at i:45883681 original size:16 final size:16
Alignment explanation
Indices: 45883641--45883675 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
45883631 ACAAAGGGTC
*
45883641 ATAATTATTCAAGTTG
1 ATAATTATTCAAGTAG
45883657 ATAATTATTCAAGTAG
1 ATAATTATTCAAGTAG
45883673 ATA
1 ATA
45883676 TCTATTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (16 bp):
ATAATTATTCAAGTAG
Found at i:45887317 original size:12 final size:12
Alignment explanation
Indices: 45887300--45887326 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45887290 ATTCCGAAGT
45887300 ATATATATATAC
1 ATATATATATAC
45887312 ATATATATATAC
1 ATATATATATAC
45887324 ATA
1 ATA
45887327 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:45887840 original size:27 final size:27
Alignment explanation
Indices: 45887809--45887986 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
45887799 TAAATTGTAC
45887809 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
45887836 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45887862 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
45887890 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
45887918 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45887945 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
45887972 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45887987 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:45887923 original size:82 final size:81
Alignment explanation
Indices: 45887810--45887965 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
45887800 AAATTGTACA
* *
45887810 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
45887874 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
45887891 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
45887956 TGCGAGTTGA
65 TGCGAATTGA
45887966 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:45887977 original size:82 final size:81
Alignment explanation
Indices: 45887806--45887986 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
45887796 GATTAAATTG
* *
45887806 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
45887871 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
45887887 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
45887951 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
45887969 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
45887987 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:45895350 original size:25 final size:25
Alignment explanation
Indices: 45895322--45895382 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
45895312 TCACAGCTTA
* * *
45895322 TGTGAACATACCGATTTATAGCTCG
1 TGTGAGCATACCAATTTACAGCTCG
45895347 TGTGAGCATACCAATTTACAGCTCG
1 TGTGAGCATACCAATTTACAGCTCG
45895372 TGTGAGCATAC
1 TGTGAGCATAC
45895383 ATGTACAGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (25 bp):
TGTGAGCATACCAATTTACAGCTCG
Found at i:45897741 original size:30 final size:30
Alignment explanation
Indices: 45897702--45897760 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
45897692 TCCTTACAAG
*
45897702 TAAGCCCTTTAACTTGAAAATCATTTTTAC
1 TAAGCCCTTTAACTTAAAAATCATTTTTAC
* *
45897732 TAAGTCCTTTAACTTAAAAATCCTTTTTA
1 TAAGCCCTTTAACTTAAAAATCATTTTTA
45897761 TTTCATCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.19, G:0.05, T:0.42
Consensus pattern (30 bp):
TAAGCCCTTTAACTTAAAAATCATTTTTAC
Found at i:45898335 original size:36 final size:36
Alignment explanation
Indices: 45898251--45898404 Score: 152
Period size: 35 Copynumber: 4.3 Consensus size: 36
45898241 CATCATCAGC
* * *
45898251 CCAACC-ATAACACATCAAATGCTCACACGAGCCAAT
1 CCAACCGA-AACACATCAAATGCTCACAAGAGCTAGT
** *
45898287 CCTTCCAAAACACATCAAATGCTCACAAGAGCTAGT
1 CCAACCGAAACACATCAAATGCTCACAAGAGCTAGT
* * *
45898323 CCAACCGTAACACA-CTAATGCTCATAAGAGCTAGT
1 CCAACCGAAACACATCAAATGCTCACAAGAGCTAGT
* * * * *
45898358 CCAAGCGAAACAC-GCCAATGCTCATAAAAGCTAGT
1 CCAACCGAAACACATCAAATGCTCACAAGAGCTAGT
45898393 CCAACCGAAACA
1 CCAACCGAAACA
45898405 TACCAAACAG
Statistics
Matches: 100, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
35 60 0.60
36 39 0.39
37 1 0.01
ACGTcount: A:0.40, C:0.32, G:0.12, T:0.16
Consensus pattern (36 bp):
CCAACCGAAACACATCAAATGCTCACAAGAGCTAGT
Found at i:45906261 original size:62 final size:63
Alignment explanation
Indices: 45906138--45906262 Score: 234
Period size: 62 Copynumber: 2.0 Consensus size: 63
45906128 TCAGGTGTCT
45906138 CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAAATTAGTCATCAATAAAATAGTTAATA
1 CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAAATTAGTCATCAATAAAATAGTTAATA
*
45906201 CAACTCCAGTGGGGGTACTGAAGTC-AAAAGGGAAAAATTAGTCATCAATAAAATAGTTAATA
1 CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAAATTAGTCATCAATAAAATAGTTAATA
45906263 ATCCACTAAC
Statistics
Matches: 61, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
62 36 0.59
63 25 0.41
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.22
Consensus pattern (63 bp):
CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAAATTAGTCATCAATAAAATAGTTAATA
Found at i:45906459 original size:6 final size:6
Alignment explanation
Indices: 45906448--45906498 Score: 66
Period size: 6 Copynumber: 8.5 Consensus size: 6
45906438 CTTCAATCTG
* * * *
45906448 CTCTTC CTCTTC CTCTTC CTCTTC TTCTTC TTCCTC CTCCTC CTCTTC
1 CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC
45906496 CTC
1 CTC
45906499 CAAATCACCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (6 bp):
CTCTTC
Found at i:45906479 original size:15 final size:15
Alignment explanation
Indices: 45906452--45906499 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
45906442 AATCTGCTCT
45906452 TCCTCTTCCTCTTCC
1 TCCTCTTCCTCTTCC
* *
45906467 TCTTCTTCTTCTTCC
1 TCCTCTTCCTCTTCC
*
45906482 TCCTCCTCCTCTTCC
1 TCCTCTTCCTCTTCC
45906497 TCC
1 TCC
45906500 AAATCACCCC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (15 bp):
TCCTCTTCCTCTTCC
Found at i:45907617 original size:14 final size:14
Alignment explanation
Indices: 45907598--45907630 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
45907588 AAAAACTGAA
45907598 AGACATTAATCATT
1 AGACATTAATCATT
45907612 AGACATTAATCATT
1 AGACATTAATCATT
45907626 AGACA
1 AGACA
45907631 CGAATCATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.30
Consensus pattern (14 bp):
AGACATTAATCATT
Found at i:45907636 original size:14 final size:14
Alignment explanation
Indices: 45907605--45907639 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
45907595 GAAAGACATT
**
45907605 AATCATTAGACATT
1 AATCATTAGACACG
45907619 AATCATTAGACACG
1 AATCATTAGACACG
45907633 AATCATT
1 AATCATT
45907640 CAAGATTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (14 bp):
AATCATTAGACACG
Found at i:45912821 original size:17 final size:17
Alignment explanation
Indices: 45912801--45912844 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
45912791 TAATTTTATC
*
45912801 ATAATATTAAATTAAAA
1 ATAATAATAAATTAAAA
* *
45912818 ATAATTAATAATTTAAAT
1 ATAA-TAATAAATTAAAA
45912836 ATAATAATA
1 ATAATAATA
45912845 TCTAACAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
ATAATAATAAATTAAAA
Found at i:45915925 original size:18 final size:18
Alignment explanation
Indices: 45915904--45915966 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
45915894 GGTTGATAAC
45915904 GAAGAGGAAGTTGAGAAT
1 GAAGAGGAAGTTGAGAAT
** *
45915922 GAAGAGTGAA-AAGAGAAC
1 GAAGAG-GAAGTTGAGAAT
* *
45915940 AAAGAGGGAGTTGAGAAT
1 GAAGAGGAAGTTGAGAAT
45915958 GAAGAGGAA
1 GAAGAGGAA
45915967 TCTAAAACCG
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
17 2 0.06
18 28 0.85
19 3 0.09
ACGTcount: A:0.49, C:0.02, G:0.38, T:0.11
Consensus pattern (18 bp):
GAAGAGGAAGTTGAGAAT
Found at i:45917954 original size:23 final size:24
Alignment explanation
Indices: 45917910--45917955 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
45917900 AAAATAGTTG
*
45917910 AGAGAATATGATCGAATGAGATTA
1 AGAGAATATGATCGAATAAGATTA
45917934 AGAGAAT-TGA-CAGAATAAGATT
1 AGAGAATATGATC-GAATAAGATT
45917956 GAATAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 1 0.05
23 12 0.60
24 7 0.35
ACGTcount: A:0.48, C:0.04, G:0.24, T:0.24
Consensus pattern (24 bp):
AGAGAATATGATCGAATAAGATTA
Found at i:45920167 original size:23 final size:23
Alignment explanation
Indices: 45920137--45920188 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
45920127 TAGATTTTTC
*
45920137 CTAAATATTATCATTAAATAATT
1 CTAAATATTATCACTAAATAATT
45920160 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
45920183 CAAAAT
1 CTAAAT
45920189 TTAAAAATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:45930931 original size:87 final size:87
Alignment explanation
Indices: 45930797--45931302 Score: 759
Period size: 87 Copynumber: 5.8 Consensus size: 87
45930787 CTTAAATTTA
* * * * * *
45930797 TTTCCCTATTCCCGGGGAAGATGAGATTCGCCATCTTGGATCTGCTCCACTATTGCTTAGGGAGA
1 TTTCCCTACTCCTGGGGAAGATGAGATTCGCCGTCTTCGATCCGCTCCACTATTGCTTAAGGAGA
* ****
45930862 TAGAACCCGTGG-CTTAAATCCG
66 TAGGATTAATGGTC-TAAATCCG
*
45930884 TTTCCCTACTTCTGGGGAAGATGAGATTCGCCGTCTTCGATCCGCTCCACTATTGCTTAAGGAGA
1 TTTCCCTACTCCTGGGGAAGATGAGATTCGCCGTCTTCGATCCGCTCCACTATTGCTTAAGGAGA
*
45930949 TAGGATTAATGGTCTAAATCCA
66 TAGGATTAATGGTCTAAATCCG
* *
45930971 TTTCCCTACT-CTAGGGGAAGATGAGATTCGCCGTCTTGGATCCGCTCCACTATTACTTAAGGAG
1 TTTCCCTACTCCT-GGGGAAGATGAGATTCGCCGTCTTCGATCCGCTCCACTATTGCTTAAGGAG
*
45931035 ATAGGATTAATGGTCTAAATCTG
65 ATAGGATTAATGGTCTAAATCCG
45931058 TTTCCCTACTCCTGGGGAAGATGAGATTCGCCGTCTTCGATCCGCTCCACTATTGCTT-AGAGAG
1 TTTCCCTACTCCTGGGGAAGATGAGATTCGCCGTCTTCGATCCGCTCCACTATTGCTTAAG-GAG
45931122 ATAGGATTAATGG-CTTAAATCCG
65 ATAGGATTAATGGTC-TAAATCCG
***
45931145 TTTCCCTACTCCTGGGGAAGATGAGATTTAACGTCTTCGATCCGCTCCACTATTGCTTAAGGAGA
1 TTTCCCTACTCCTGGGGAAGATGAGATTCGCCGTCTTCGATCCGCTCCACTATTGCTTAAGGAGA
45931210 TAGGATTAATGGTCTAAATCCG
66 TAGGATTAATGGTCTAAATCCG
* *
45931232 TTTCCCTACTCCTGGGGAAGATGAGATTCGCCGTCTTCGATCCGTTCCACTATTGCTTAGGGAGA
1 TTTCCCTACTCCTGGGGAAGATGAGATTCGCCGTCTTCGATCCGCTCCACTATTGCTTAAGGAGA
45931297 TAGGAT
66 TAGGAT
45931303 CTGCCATCTT
Statistics
Matches: 384, Mismatches: 28, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
86 5 0.01
87 373 0.97
88 6 0.02
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (87 bp):
TTTCCCTACTCCTGGGGAAGATGAGATTCGCCGTCTTCGATCCGCTCCACTATTGCTTAAGGAGA
TAGGATTAATGGTCTAAATCCG
Found at i:45931277 original size:44 final size:44
Alignment explanation
Indices: 45931057--45931277 Score: 118
Period size: 44 Copynumber: 5.1 Consensus size: 44
45931047 GTCTAAATCT
**
45931057 GTTTCCCTACTCCTGGGGAAGATGAGATTCGCCGTCTTCGATCC
1 GTTTCCCTACTCCTGGGGAAGATGAGATTCAACGTCTTCGATCC
* * * ** * * **
45931101 G-CTCCACTATTGCT-TAGAGAGAT-AGGATT-AATGGCTTAAATCC
1 GTTTCC-CTACTCCTGGGGA-AGATGA-GATTCAACGTCTTCGATCC
*
45931144 GTTTCCCTACTCCTGGGGAAGATGAGATTTAACGTCTTCGATCC
1 GTTTCCCTACTCCTGGGGAAGATGAGATTCAACGTCTTCGATCC
* * * ** * **
45931188 G-CTCCACTATTGCTTAAGG-AGAT-AGGATT-AATGGTC-TAAATCC
1 GTTTCC-CTACT-CCTGGGGAAGATGA-GATTCAA-CGTCTTCGATCC
**
45931231 GTTTCCCTACTCCTGGGGAAGATGAGATTCGCCGTCTTCGATCC
1 GTTTCCCTACTCCTGGGGAAGATGAGATTCAACGTCTTCGATCC
45931275 GTT
1 GTT
45931278 CCACTATTGC
Statistics
Matches: 123, Mismatches: 38, Indels: 32
0.64 0.20 0.17
Matches are distributed among these distances:
42 4 0.03
43 56 0.46
44 59 0.48
45 4 0.03
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31
Consensus pattern (44 bp):
GTTTCCCTACTCCTGGGGAAGATGAGATTCAACGTCTTCGATCC
Found at i:45945179 original size:15 final size:16
Alignment explanation
Indices: 45945151--45945180 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
45945141 ATATCTTTCA
45945151 TCAATTGTATATAATT
1 TCAATTGTATATAATT
45945167 TCAATTG-ATATAAT
1 TCAATTGTATATAAT
45945181 AACAAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (16 bp):
TCAATTGTATATAATT
Found at i:45945715 original size:29 final size:29
Alignment explanation
Indices: 45945683--45945766 Score: 89
Period size: 29 Copynumber: 2.8 Consensus size: 29
45945673 AAACAAATAT
45945683 TAAAAAGTATAAAAAACTTATAAATTTTA
1 TAAAAAGTATAAAAAACTTATAAATTTTA
**
45945712 TAAAAACGTATAAAATTTCTTATAAATTTTA
1 TAAAAA-GTATAAAA-AACTTATAAATTTTA
* * *
45945743 -ATAAATTATAAAAAATATTATAAA
1 TAAAAAGTATAAAAAA-CTTATAAA
45945767 AATAAGGCTT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
29 20 0.44
30 12 0.27
31 13 0.29
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (29 bp):
TAAAAAGTATAAAAAACTTATAAATTTTA
Found at i:45945737 original size:31 final size:30
Alignment explanation
Indices: 45945683--45945747 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 30
45945673 AAACAAATAT
45945683 TAAAAAGTATAAAAAACTTATAAATTTT-A
1 TAAAAAGTATAAAAAACTTATAAATTTTAA
**
45945712 TAAAAACGTATAAAATTTCTTATAAATTTTAA
1 TAAAAA-GTATAAAA-AACTTATAAATTTTAA
45945744 TAAA
1 TAAA
45945748 TTATAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 6 0.19
30 8 0.26
31 12 0.39
32 5 0.16
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (30 bp):
TAAAAAGTATAAAAAACTTATAAATTTTAA
Found at i:45945939 original size:86 final size:87
Alignment explanation
Indices: 45945785--45945971 Score: 236
Period size: 86 Copynumber: 2.2 Consensus size: 87
45945775 TTAAGGGTCT
* * *
45945785 AAAAA-TCCTTCAAACTTTAAAAAAAAAGCAATTAAGCAGCTCCTTTTTTTGCACTTAATTGAGC
1 AAAAAGTCCTTCAAACTTTAAAAAAAAAGCAATTAAGCACCTCATTTTTTTGCACTCAATTGAGC
*
45945849 ACTTGAACTTTCAGAATGCATC
66 ACTTGAACTTTCAAAATGCATC
** * * *
45945871 AAAAAGTCCTTCAAACTTCTTCAAAAAAAGCAATTAAGC-CCTTATTTTTTT-TACTCAATTGCG
1 AAAAAGTCCTTCAAACTT-TAAAAAAAAAGCAATTAAGCACCTCATTTTTTTGCACTCAATTGAG
*
45945934 TACTTGAACTTTCAAAATGCATC
65 CACTTGAACTTTCAAAATGCATC
* *
45945957 AAAAAGACCCTCAAA
1 AAAAAGTCCTTCAAA
45945972 AGTGACCTTT
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
86 48 0.55
87 21 0.24
88 18 0.21
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (87 bp):
AAAAAGTCCTTCAAACTTTAAAAAAAAAGCAATTAAGCACCTCATTTTTTTGCACTCAATTGAGC
ACTTGAACTTTCAAAATGCATC
Found at i:45951798 original size:47 final size:47
Alignment explanation
Indices: 45951735--45952100 Score: 644
Period size: 47 Copynumber: 7.7 Consensus size: 47
45951725 ATGATAGTAT
45951735 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
45951782 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
45951829 TGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 -GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
45951876 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
45951923 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
45951970 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
45952019 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
45952068 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
45952101 CCCGAAGGGC
Statistics
Matches: 313, Mismatches: 1, Indels: 7
0.98 0.00 0.02
Matches are distributed among these distances:
46 2 0.01
47 214 0.68
48 2 0.01
49 91 0.29
50 4 0.01
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:45952274 original size:37 final size:37
Alignment explanation
Indices: 45952218--45952296 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
45952208 CCGAGCTCTA
* * *
45952218 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
45952255 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45952292 AAGAC
1 AAGAC
45952297 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45961304 original size:41 final size:41
Alignment explanation
Indices: 45961259--45961392 Score: 171
Period size: 41 Copynumber: 3.3 Consensus size: 41
45961249 ACCAGCAATT
* ** *
45961259 AGCCTGCTAGACTTATCGTCTGAATTATTTCACCGGCACAA
1 AGCCTGCTAGACATAAAGTCCGAATTATTTCACCGGCACAA
*
45961300 AGCCTACTAGACATAAAGTCCGAATTATTTCACCGGCACAA
1 AGCCTGCTAGACATAAAGTCCGAATTATTTCACCGGCACAA
* * * *
45961341 AGCCTGCTAGACATAAAGTCCGAATAACTTCACTGGC-CTTA
1 AGCCTGCTAGACATAAAGTCCGAATTATTTCACCGGCAC-AA
45961382 AGCCTGCTAGA
1 AGCCTGCTAGA
45961393 TTTTAAACCT
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 1 0.01
41 81 0.99
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (41 bp):
AGCCTGCTAGACATAAAGTCCGAATTATTTCACCGGCACAA
Found at i:45961655 original size:25 final size:25
Alignment explanation
Indices: 45961627--45961682 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
45961617 TACGAAATAA
45961627 CTATATATGTATATTATTACCTATT
1 CTATATATGTATATTATTACCTATT
45961652 CTATATATGTATATTATTACCTATT
1 CTATATATGTATATTATTACCTATT
*
45961677 CGATAT
1 CTATAT
45961683 TTCAATTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.32, C:0.12, G:0.05, T:0.50
Consensus pattern (25 bp):
CTATATATGTATATTATTACCTATT
Found at i:45962082 original size:46 final size:46
Alignment explanation
Indices: 45962029--45962120 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
45962019 CCGAATATAA
**
45962029 GTGTACACATATACGCCATCCATATATCAAACTTAATCAATCAAAG
1 GTGTACACATATAAACCATCCATATATCAAACTTAATCAATCAAAG
45962075 GTGTACACATATAAACCATCCATATATCAAACTTAATCAATCAAAG
1 GTGTACACATATAAACCATCCATATATCAAACTTAATCAATCAAAG
45962121 TATTTTTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.26
Consensus pattern (46 bp):
GTGTACACATATAAACCATCCATATATCAAACTTAATCAATCAAAG
Found at i:45964050 original size:15 final size:14
Alignment explanation
Indices: 45964030--45964090 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 14
45964020 TGTACTGCAA
45964030 TTGTTTATTTTTATT
1 TTGTTT-TTTTTATT
45964045 TTGTTTTCTTTTA-T
1 TTGTTTT-TTTTATT
45964059 TTGCTTCTTTTTTATT
1 TTG-TT-TTTTTTATT
* * *
45964075 TTATTTATATTATT
1 TTGTTTTTTTTATT
45964089 TT
1 TT
45964091 ATTATTATGT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
14 14 0.36
15 20 0.51
16 5 0.13
ACGTcount: A:0.13, C:0.05, G:0.05, T:0.77
Consensus pattern (14 bp):
TTGTTTTTTTTATT
Found at i:45964678 original size:21 final size:21
Alignment explanation
Indices: 45964626--45964678 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
45964616 GGCTACAAAA
*
45964626 TTCTACCGATAGAATTGAGAG
1 TTCTACCGATACAATTGAGAG
** *
45964647 TTCTATTGATACAACTT-AGGG
1 TTCTACCGATACAA-TTGAGAG
45964668 TTCTACCGATA
1 TTCTACCGATA
45964679 TAAGCCAGAC
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 23 0.92
22 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (21 bp):
TTCTACCGATACAATTGAGAG
Found at i:45967305 original size:50 final size:50
Alignment explanation
Indices: 45967251--45967417 Score: 212
Period size: 50 Copynumber: 3.3 Consensus size: 50
45967241 TCCTGATATA
*
45967251 TGGCTCTCTTGAGCTTCCCATTATTTGGCTCTCACGAGCTTCTTGATAAT
1 TGGCTCTCATGAGCTTCCCATTATTTGGCTCTCACGAGCTTCTTGATAAT
* *
45967301 TGGCTGTCATGAGCTTCCCATTATTTGGCTCTCACGAGCTTCCTGATAAT
1 TGGCTCTCATGAGCTTCCCATTATTTGGCTCTCACGAGCTTCTTGATAAT
* * * * *
45967351 TGGCTCTCATAAGCTTCCCGATTA-ATGGCTCTTC-GGAGCTTCTCGATATT
1 TGGCTCTCATGAGCTTCCC-ATTATTTGGCTC-TCACGAGCTTCTTGATAAT
**
45967401 TGGCTCTTTTGAGCTTC
1 TGGCTCTCATGAGCTTC
45967418 TTGTTTATGG
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
50 96 0.94
51 6 0.06
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.38
Consensus pattern (50 bp):
TGGCTCTCATGAGCTTCCCATTATTTGGCTCTCACGAGCTTCTTGATAAT
Found at i:45967418 original size:25 final size:24
Alignment explanation
Indices: 45967228--45967417 Score: 132
Period size: 25 Copynumber: 7.6 Consensus size: 24
45967218 ACTCACCACA
* * *
45967228 GCTCTTATGAGCATCCTGATATATG
1 GCTCTCATGAGCTTCC-GATATTTG
* *
45967253 GCTCTCTTGAGCTTCCCATTATTTG
1 GCTCTCATGAGCTTCCGA-TATTTG
* * *
45967278 GCTCTCACGAGCTTCTTGATAATTG
1 GCTCTCATGAGCTTC-CGATATTTG
* *
45967303 GCTGTCATGAGCTTCCCATTATTTG
1 GCTCTCATGAGCTTCCGA-TATTTG
* *
45967328 GCTCTCACGAGCTTCCTGATAATTG
1 GCTCTCATGAGCTTCC-GATATTTG
* *
45967353 GCTCTCATAAGCTTCCCGAT-TAATG
1 GCTCTCATGAGCTT-CCGATAT-TTG
*
45967378 GCTCTTC-GGAGCTTCTCGATATTTG
1 GCTC-TCATGAGCTTC-CGATATTTG
**
45967403 GCTCTTTTGAGCTTC
1 GCTCTCATGAGCTTC
45967418 TTGTTTATGG
Statistics
Matches: 127, Mismatches: 28, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
24 4 0.03
25 116 0.91
26 7 0.06
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.38
Consensus pattern (24 bp):
GCTCTCATGAGCTTCCGATATTTG
Found at i:45972603 original size:48 final size:48
Alignment explanation
Indices: 45972532--45972628 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
45972522 ATTATGTGTA
45972532 AGTATGAAAATGGCTAGTTATGTACCCCAAAACCAATCTTTGTACTAT
1 AGTATGAAAATGGCTAGTTATGTACCCCAAAACCAATCTTTGTACTAT
45972580 AGTATGAAAATGGCTAGTTATGTACCCCAAAACCAATCTTTGTACTAT
1 AGTATGAAAATGGCTAGTTATGTACCCCAAAACCAATCTTTGTACTAT
45972628 A
1 A
45972629 CTTGCTCAAG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (48 bp):
AGTATGAAAATGGCTAGTTATGTACCCCAAAACCAATCTTTGTACTAT
Found at i:45975156 original size:20 final size:20
Alignment explanation
Indices: 45975131--45975168 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45975121 GGGAGCAGTT
*
45975131 TTTCAATCGATTTAAAAATA
1 TTTCAATCGAGTTAAAAATA
*
45975151 TTTCAATTGAGTTAAAAA
1 TTTCAATCGAGTTAAAAA
45975169 AGTTTAAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (20 bp):
TTTCAATCGAGTTAAAAATA
Found at i:45983591 original size:13 final size:13
Alignment explanation
Indices: 45983569--45983600 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
45983559 GTGAACTTCA
*
45983569 TGTAGTAATATCC
1 TGTAGCAATATCC
45983582 TGTAGCAATATCC
1 TGTAGCAATATCC
45983595 TGTAGC
1 TGTAGC
45983601 TTAGGTCCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (13 bp):
TGTAGCAATATCC
Found at i:45984875 original size:29 final size:30
Alignment explanation
Indices: 45984835--45984900 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
45984825 TGGTTTAAAG
* *
45984835 TGCAATTGTATACATGAACA-TTGATTTTA
1 TGCAATTGTATACATGAAAATTTGATTTGA
*
45984864 TGCAATTTTATACATGAAAATTTGATTTGA
1 TGCAATTGTATACATGAAAATTTGATTTGA
*
45984894 TCCAATT
1 TGCAATT
45984901 CTTGTAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 18 0.56
30 14 0.44
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (30 bp):
TGCAATTGTATACATGAAAATTTGATTTGA
Found at i:45985109 original size:29 final size:30
Alignment explanation
Indices: 45985037--45985122 Score: 93
Period size: 31 Copynumber: 2.9 Consensus size: 30
45985027 TAAGTAAAAT
* * * *
45985037 TTAAAGTTTCAAGTATACATTTGAACCTCAA
1 TTAAAGTTTCATGTATACAATTGCACC-GAA
* * *
45985068 TTAGAGTTTCATGTGTATAATTGCACCGAA
1 TTAAAGTTTCATGTATACAATTGCACCGAA
45985098 TTAAAG-TTCATGTATACAATTGCAC
1 TTAAAGTTTCATGTATACAATTGCAC
45985123 AATAAATCAA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
29 17 0.38
30 7 0.16
31 21 0.47
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (30 bp):
TTAAAGTTTCATGTATACAATTGCACCGAA
Found at i:45986694 original size:7 final size:7
Alignment explanation
Indices: 45986682--45986742 Score: 54
Period size: 7 Copynumber: 8.6 Consensus size: 7
45986672 AATCTGTATT
45986682 ATTTTAA
1 ATTTTAA
45986689 ATTTTAA
1 ATTTTAA
*
45986696 A-TTTAT
1 ATTTTAA
45986702 ATTATT-A
1 ATT-TTAA
* *
45986709 ATCTATATT
1 AT-TTTA-A
45986718 ATTTTAA
1 ATTTTAA
45986725 ATTTTAA
1 ATTTTAA
45986732 ATTTTAA
1 ATTTTAA
45986739 ATTT
1 ATTT
45986743 ATGTTATACC
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
6 5 0.12
7 30 0.70
8 6 0.14
9 2 0.05
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTTAA
Found at i:45986860 original size:17 final size:18
Alignment explanation
Indices: 45986838--45986874 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
45986828 TTTCCTCAAA
*
45986838 TCAAACCCTC-CATCCAT
1 TCAAACCCTCAAATCCAT
45986855 TCAAACCCTCAAATCCAT
1 TCAAACCCTCAAATCCAT
45986873 TC
1 TC
45986875 TTCTTCTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.32, C:0.43, G:0.00, T:0.24
Consensus pattern (18 bp):
TCAAACCCTCAAATCCAT
Found at i:45988184 original size:28 final size:28
Alignment explanation
Indices: 45988133--45988186 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
45988123 AAAAATTCAG
*
45988133 AAAAACTATAAAAGAATTTGAAATATGT
1 AAAAACTATAAAAGAATTTAAAATATGT
*
45988161 AAAAAGTATAAAA-AATTTCAAAATAT
1 AAAAACTATAAAAGAATTT-AAAATAT
45988187 ATTAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (28 bp):
AAAAACTATAAAAGAATTTAAAATATGT
Found at i:45992890 original size:9 final size:9
Alignment explanation
Indices: 45992876--45992900 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
45992866 AAAATGTAAA
45992876 GCCCAAATG
1 GCCCAAATG
45992885 GCCCAAATG
1 GCCCAAATG
45992894 GCCCAAA
1 GCCCAAA
45992901 ACCTAAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.36, G:0.20, T:0.08
Consensus pattern (9 bp):
GCCCAAATG
Found at i:45997647 original size:100 final size:100
Alignment explanation
Indices: 45997525--45998110 Score: 823
Period size: 100 Copynumber: 5.9 Consensus size: 100
45997515 TAACTCGTAA
* * * * * * * * *
45997525 CTTTAATCTATTTAACTACAATGTCGGGGAAGTATGATTCGCTGTTGTAGCTTCAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * * * *
45997590 CTACACCGCTAGGGAGGTGAGATTCG-TCATTGTGG
66 CTGCACCGCCAGGGAAGTAAGATTCGCT-GTTGTAG
* * *
45997625 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCAATGTGGCTTTAATCTATTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
45997690 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* *
45997725 CTTTAATCTTTTTAACTGCAATGTCGGGTAAGCAAGATTCACCGATGTGGCTTTAATCTGTTGCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* *
45997790 CTGCACCGCCAGGGAAGTAAGATTCGCCGTTGTGG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* * *
45997825 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGTTGTGGCTTTAATTTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
*
45997890 CTGCACCGCCAGGGAAATAAGATTCGCTGTTGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* *
45997925 CTTTAATCTTTTTAACTTCAATGTCGGGGAAGCAAGATTCACTGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
** * *
45997990 CTGCGTCGCCTGGGGAGTAAGATTCGCTGTTGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* * *
45998025 CTTTAATCTTTTTAACTGCAATGCCAGGGAAGCAAGGTTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* *
45998090 GTGCACCGCCAGGGAAATAAG
66 CTGCACCGCCAGGGAAGTAAG
45998111 TTTTAATGCG
Statistics
Matches: 431, Mismatches: 54, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
100 430 1.00
101 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (100 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
Found at i:45998101 original size:50 final size:50
Alignment explanation
Indices: 45997568--45998105 Score: 387
Period size: 50 Copynumber: 10.8 Consensus size: 50
45997558 ATGATTCGCT
* * * * * * ** **
45997568 GTTGTAGCTTCAATCTGTTCCACTACACCGCTAGGGAGGTGAGATTCGTC
1 GTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGCAAGATTCACC
* * ** * * * *
45997618 ATTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACC
1 GTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGCAAGATTCACC
** * * * * *
45997668 AATGTGGCTTTAATCTATTCCACTGCACCGCCAGGGAAGTAAGATTCGCT
1 GTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGCAAGATTCACC
* * ** * *
45997718 GTTGTAGCTTTAATCTTTTTAACTGCAATGTC-GGGTAAGCAAGATTCACC
1 GTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGG-AAGCAAGATTCACC
* * * * *
45997768 GATGTGGCTTTAATCTGTTGCACTGCACCGCCAGGGAAGTAAGATTCGCC
1 GTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGCAAGATTCACC
* ** * *
45997818 GTTGTGGCTTTAATCTTTTTAACTGCAATGTC-GAGGAAGCAAGATTCACC
1 GTTGTGGCTTTAATCTGTTCCACTGCAACGCCAG-GGAAGCAAGATTCACC
* * ** * *
45997868 GTTGTGGCTTTAATTTGTTCCACTGCACCGCCAGGGAAATAAGATTCGCT
1 GTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGCAAGATTCACC
* * ** * * * * *
45997918 GTTGTAGCTTTAATCTTTTTAACTTCAATGTCGGGGAAGCAAGATTCACT
1 GTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGCAAGATTCACC
* ** * * * * *
45997968 GATGTGGCTTTAATCTGTTCCACTGCGTCGCCTGGGGAGTAAGATTCGCT
1 GTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGCAAGATTCACC
* * ** * *
45998018 GTTGTAGCTTTAATCTTTTTAACTGCAATGCCAGGGAAGCAAGGTTCACC
1 GTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGCAAGATTCACC
* * *
45998068 GATGTGGCTTTAATCTGTTCCAGTGCACCGCCAGGGAA
1 GTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAA
45998106 ATAAGTTTTA
Statistics
Matches: 365, Mismatches: 119, Indels: 8
0.74 0.24 0.02
Matches are distributed among these distances:
49 4 0.01
50 357 0.98
51 4 0.01
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (50 bp):
GTTGTGGCTTTAATCTGTTCCACTGCAACGCCAGGGAAGCAAGATTCACC
Found at i:45998184 original size:44 final size:44
Alignment explanation
Indices: 45998134--45998242 Score: 112
Period size: 44 Copynumber: 2.5 Consensus size: 44
45998124 CACTCTACTG
* * *
45998134 CAACTTCAGATAGATAAGATCTATTA-CTTTAATCTGCTCCGTTA
1 CAACTTCAGAGAGATAAGAT-TATCAGCTTCAATCTGCTCCGTTA
* * ** *
45998178 CAACTTCAGGGAGATAGGATTATCAGCTTCAATCTGCTCCACTG
1 CAACTTCAGAGAGATAAGATTATCAGCTTCAATCTGCTCCGTTA
* *
45998222 CAACCTCAGGGAGATAAGATT
1 CAACTTCAGAGAGATAAGATT
45998243 TTCCATCTCC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 4 0.07
44 50 0.93
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.29
Consensus pattern (44 bp):
CAACTTCAGAGAGATAAGATTATCAGCTTCAATCTGCTCCGTTA
Found at i:45998276 original size:45 final size:44
Alignment explanation
Indices: 45998178--45998285 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 44
45998168 TGCTCCGTTA
* * *
45998178 CAACTTCAGGGAGATAGGATTATCAGCTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTATCAGCTCCAATCTGCCCCACTG
* * * *
45998222 CAACCTCAGGGAGATAAGATTTTCCATCTCCAATTTGCCCCACTG
1 CAACTTCAGGGAGATAAGATTAT-CAGCTCCAATCTGCCCCACTG
*
45998267 CAACTTCAGGGGGATAAGA
1 CAACTTCAGGGAGATAAGA
45998286 CGTTGTGGCT
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 20 0.37
45 34 0.63
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGATTATCAGCTCCAATCTGCCCCACTG
Found at i:45999621 original size:7 final size:7
Alignment explanation
Indices: 45999602--45999671 Score: 92
Period size: 7 Copynumber: 10.0 Consensus size: 7
45999592 TTAGCCTCTC
45999602 CATTTTT
1 CATTTTT
45999609 -ACTTTTT
1 CA-TTTTT
45999616 CATTTTT
1 CATTTTT
45999623 CCATTTTT
1 -CATTTTT
45999631 CA-TTTT
1 CATTTTT
45999637 CATTTTT
1 CATTTTT
45999644 CATTTTT
1 CATTTTT
45999651 CA-TTTT
1 CATTTTT
45999657 CATTTTTT
1 CA-TTTTT
45999665 CATTTTT
1 CATTTTT
45999672 TTCTGACTCA
Statistics
Matches: 57, Mismatches: 0, Indels: 12
0.83 0.00 0.17
Matches are distributed among these distances:
6 13 0.23
7 30 0.53
8 14 0.25
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:45999621 original size:14 final size:14
Alignment explanation
Indices: 45999602--45999663 Score: 74
Period size: 13 Copynumber: 4.5 Consensus size: 14
45999592 TTAGCCTCTC
45999602 CATTTTTACTTTTT
1 CATTTTTACTTTTT
*
45999616 CATTTTTCCATTTTT
1 CATTTTTAC-TTTTT
*
45999631 CATTTTCA-TTTTT
1 CATTTTTACTTTTT
*
45999644 CATTTTT-CATTTT
1 CATTTTTACTTTTT
45999657 CATTTTT
1 CATTTTT
45999664 TCATTTTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
13 22 0.54
14 8 0.20
15 11 0.27
ACGTcount: A:0.15, C:0.16, G:0.00, T:0.69
Consensus pattern (14 bp):
CATTTTTACTTTTT
Found at i:45999636 original size:21 final size:21
Alignment explanation
Indices: 45999600--45999671 Score: 110
Period size: 20 Copynumber: 3.4 Consensus size: 21
45999590 CCTTAGCCTC
*
45999600 TCCATTTTTACTTTTTCATTTT
1 TCCATTTTT-CATTTTCATTTT
45999622 TCCATTTTTCATTTTCATTTT
1 TCCATTTTTCATTTTCATTTT
45999643 T-CATTTTTCATTTTCATTTT
1 TCCATTTTTCATTTTCATTTT
*
45999663 TTCATTTTT
1 TCCATTTTT
45999672 TTCTGACTCA
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
20 20 0.42
21 19 0.40
22 9 0.19
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (21 bp):
TCCATTTTTCATTTTCATTTT
Found at i:46006292 original size:15 final size:15
Alignment explanation
Indices: 46006274--46006328 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
46006264 TGGTTGTTTA
46006274 TATTGTCATTATTAT
1 TATTGTCATTATTAT
*
46006289 TATTGTCCCCTATATTAT
1 TATTGT--CAT-TATTAT
46006307 TATTTGT-ATTATTAT
1 TA-TTGTCATTATTAT
46006322 TATTGTC
1 TATTGTC
46006329 TTTGTCTATG
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 4 0.12
15 14 0.42
16 1 0.03
17 2 0.06
18 8 0.24
19 4 0.12
ACGTcount: A:0.24, C:0.11, G:0.07, T:0.58
Consensus pattern (15 bp):
TATTGTCATTATTAT
Found at i:46009976 original size:19 final size:19
Alignment explanation
Indices: 46009952--46009996 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
46009942 ATACCTCTTT
*
46009952 TGCATT-CATCTCATGCATC
1 TGCATTACATCTCAT-CATA
*
46009971 TGCATTACATTTCATCATA
1 TGCATTACATCTCATCATA
46009990 TGCATTA
1 TGCATTA
46009997 AGTTTCATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (19 bp):
TGCATTACATCTCATCATA
Found at i:46018171 original size:44 final size:44
Alignment explanation
Indices: 46018110--46018213 Score: 120
Period size: 44 Copynumber: 2.4 Consensus size: 44
46018100 CTGATCTCTC
* * *
46018110 TGAAGTTGCAATAGAGC-AGATCATAGCTACAAACCTTATCTCCT
1 TGAAGTTGCAGTGGAGCAAGATCA-AGCTACAAACCATATCTCCT
* * * * *
46018154 TGAAGTTGTAGTGGAGCAAGTTGAAGCTACTAATCATATCTCCT
1 TGAAGTTGCAGTGGAGCAAGATCAAGCTACAAACCATATCTCCT
46018198 TGAAGTTGCAGTGGAG
1 TGAAGTTGCAGTGGAG
46018214 TGGATTAAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 46 0.92
45 4 0.08
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (44 bp):
TGAAGTTGCAGTGGAGCAAGATCAAGCTACAAACCATATCTCCT
Found at i:46018364 original size:45 final size:43
Alignment explanation
Indices: 46018290--46018630 Score: 179
Period size: 44 Copynumber: 7.7 Consensus size: 43
46018280 GTCTTATTTC
*
46018290 CCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAACCTTGTCTT
1 CCTGAAGTTGCAGTGGAGCAGACTGAAGATA-CAAACCTTATC-T
* * **
46018335 CCTGAAGTTGCAGTGGAGCA-AGTTTAAGATACAAGTCTTATCT
1 CCTGAAGTTGCAGTGGAGCAGA-CTGAAGATACAAACCTTATCT
* * * *
46018378 CCTTGAAGTTGTAGTGGAACAGATTAAAGCTATA-AATATCAGATCTTATCT
1 CC-TGAAGTTGCAGTGGAGCAGACTGAAG--ATACAA-A-C----CTTATCT
* * * * *
46018429 CTCTGAAGTTGTAGTAGAGCAGA-T-CATAT-CAAACTTTATCT
1 C-CTGAAGTTGCAGTGGAGCAGACTGAAGATACAAACCTTATCT
* ** * * *
46018470 CCTTGAAGTTGCAGTGGAGCAGAATGGGGCTACAAATCTTACCT
1 CC-TGAAGTTGCAGTGGAGCAGACTGAAGATACAAACCTTATCT
* ** * * * * *
46018514 CCCTGAAGTGGCAGCAGAGCAAATTGAAGACACTAATCTTATCT
1 -CCTGAAGTTGCAGTGGAGCAGACTGAAGATACAAACCTTATCT
* * * *
46018558 CCCTGAAGATGCAGTGGAGCAGATTGAAGATACTAATCTTATCT
1 -CCTGAAGTTGCAGTGGAGCAGACTGAAGATACAAACCTTATCT
* * *
46018602 CCCTAAAGTTGCAGTGGAGTAGATTGAAG
1 -CCTGAAGTTGCAGTGGAGCAGACTGAAG
46018631 CGACAAATTC
Statistics
Matches: 234, Mismatches: 44, Indels: 37
0.74 0.14 0.12
Matches are distributed among these distances:
40 1 0.00
41 25 0.11
42 1 0.00
43 4 0.02
44 133 0.57
45 33 0.14
46 4 0.02
47 4 0.02
49 1 0.00
50 1 0.00
51 26 0.11
52 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (43 bp):
CCTGAAGTTGCAGTGGAGCAGACTGAAGATACAAACCTTATCT
Found at i:46018616 original size:44 final size:44
Alignment explanation
Indices: 46018464--46018630 Score: 199
Period size: 44 Copynumber: 3.8 Consensus size: 44
46018454 ATATCAAACT
* * ** * *
46018464 TTATCTCCTTGAAGTTGCAGTGGAGCAGAATGGGGCTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTAATC
* * ** * *
46018508 TTACCTCCCTGAAGTGGCAGCAGAGCAAATTGAAGACACTAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTAATC
*
46018552 TTATCTCCCTGAAGATGCAGTGGAGCAGATTGAAGATACTAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTAATC
* *
46018596 TTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
46018631 CGACAAATTC
Statistics
Matches: 101, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 101 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACTAATC
Found at i:46019910 original size:30 final size:31
Alignment explanation
Indices: 46019852--46019910 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
46019842 TTCAATGTGG
*
46019852 TTTTTTTTATATTTTTTATTTCGGCCTTAAT
1 TTTTTTTTATATTTTTAATTTCGGCCTTAAT
46019883 TTTTTTTTA-ATTTTTAATTT-GGTCCTTA
1 TTTTTTTTATATTTTTAATTTCGG-CCTTA
46019911 GACCATGCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 2 0.08
30 15 0.58
31 9 0.35
ACGTcount: A:0.17, C:0.08, G:0.07, T:0.68
Consensus pattern (31 bp):
TTTTTTTTATATTTTTAATTTCGGCCTTAAT
Found at i:46020522 original size:18 final size:18
Alignment explanation
Indices: 46020499--46020550 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
46020489 TGGTTGTTTA
46020499 TATTGTCATTATTATTAT
1 TATTGTCATTATTATTAT
**
46020517 TATTGTCCCCTA-TATTAT
1 TATTGT-CATTATTATTAT
46020535 TATTTGT-ATTATTATT
1 TA-TTGTCATTATTATT
46020551 GTCTTTGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
17 2 0.07
18 18 0.67
19 7 0.26
ACGTcount: A:0.25, C:0.10, G:0.06, T:0.60
Consensus pattern (18 bp):
TATTGTCATTATTATTAT
Found at i:46020531 original size:30 final size:30
Alignment explanation
Indices: 46020497--46020553 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
46020487 TATGGTTGTT
*
46020497 TATATTGTCATTAT-TATTATTATTGTCCCC
1 TATATTATCATT-TGTATTATTATTGTCCCC
*
46020527 TATATTATTATTTGTATTATTATTGTC
1 TATATTATCATTTGTATTATTATTGTC
46020554 TTTGTCTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.25, C:0.11, G:0.07, T:0.58
Consensus pattern (30 bp):
TATATTATCATTTGTATTATTATTGTCCCC
Found at i:46021818 original size:31 final size:31
Alignment explanation
Indices: 46021783--46021951 Score: 182
Period size: 31 Copynumber: 5.5 Consensus size: 31
46021773 ATATATATTA
*
46021783 ATATACAAATCAATTTCAATAATGTATAATC
1 ATATACAAATCAATTTCAACAATGTATAATC
* * *
46021814 ATATACAAATTAATTTCAGCAATGAATAATC
1 ATATACAAATCAATTTCAACAATGTATAATC
* * *
46021845 ATATACGAATCAA-TTCGACAGCT-TAT-ATCC
1 ATATACAAATCAATTTCAACA-ATGTATAAT-C
* *
46021875 TTATACAAATCAATTTCAATAATGTATAATC
1 ATATACAAATCAATTTCAACAATGTATAATC
* *
46021906 ATATACAAATTAATTTCAACAATGAATAATC
1 ATATACAAATCAATTTCAACAATGTATAATC
* *
46021937 ATATACGAATGAATT
1 ATATACAAATCAATT
46021952 CGACAGCTTA
Statistics
Matches: 112, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
29 2 0.02
30 20 0.18
31 88 0.79
32 2 0.02
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.34
Consensus pattern (31 bp):
ATATACAAATCAATTTCAACAATGTATAATC
Found at i:46022044 original size:92 final size:92
Alignment explanation
Indices: 46021784--46022034 Score: 409
Period size: 92 Copynumber: 2.7 Consensus size: 92
46021774 TATATATTAA
46021784 TATACAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATAT
1 TATACAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATAT
46021849 ACGAATCAATTCGACAGCTTATATCCT
66 ACGAATCAATTCGACAGCTTATATCCT
*
46021876 TATACAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAACAATGAATAATCATAT
1 TATACAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATAT
*
46021941 ACGAATGAATTCGACAGCTTATATCCT
66 ACGAATCAATTCGACAGCTTATATCCT
* * *
46021968 TATACAAATCAAATTCAATAATG-AGTAA-CTATAAATAAATTAATTTCAGCAATGAAT-ATCGA
1 TATACAAATCAATTTCAATAATGTA-TAATC-ATATACAAATTAATTTCAGCAATGAATAATC-A
46022030 TATAC
63 TATAC
46022035 CCAACAATTC
Statistics
Matches: 150, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
91 5 0.03
92 145 0.97
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.33
Consensus pattern (92 bp):
TATACAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATAT
ACGAATCAATTCGACAGCTTATATCCT
Found at i:46022883 original size:11 final size:11
Alignment explanation
Indices: 46022867--46022891 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
46022857 CCATGTTGTA
46022867 AATATTAAAAT
1 AATATTAAAAT
46022878 AATATTAAAAT
1 AATATTAAAAT
46022889 AAT
1 AAT
46022892 TTTACGACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATATTAAAAT
Found at i:46028586 original size:46 final size:45
Alignment explanation
Indices: 46028528--46028680 Score: 137
Period size: 46 Copynumber: 3.3 Consensus size: 45
46028518 AAAAAATTTA
* * *
46028528 AAAATATCTCAAGGCATATTTGAAAGCATCTTTGAGAGAGATTTTG
1 AAAACATCTCAAGG-ATATTTGAAAGCATCCTTGAGAGAGGTTTTG
* * * * *
46028574 AAAATATTTCAAGGGAGATATGAAAGTC-TCCTTAAGAGAGGTTTTG
1 AAAACATCTCAA-GGATATTTGAAAG-CATCCTTGAGAGAGGTTTTG
* * * *
46028620 AGAACATCTCAAGGATGATTTGAGAGCACCCTTGAGAGAGGGTTTTA
1 AAAACATCTCAAGGAT-ATTTGAAAGCATCCTTGAGAGA-GGTTTTG
*
46028667 AAAACATTTCAAGG
1 AAAACATCTCAAGG
46028681 GAGATCTCAT
Statistics
Matches: 85, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
45 4 0.05
46 60 0.71
47 21 0.25
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.29
Consensus pattern (45 bp):
AAAACATCTCAAGGATATTTGAAAGCATCCTTGAGAGAGGTTTTG
Found at i:46030980 original size:5 final size:5
Alignment explanation
Indices: 46030963--46030996 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
46030953 AATTGATTGT
*
46030963 ATATC ATACC ATATC ATATC ATATC ATATC ATAT
1 ATATC ATATC ATATC ATATC ATATC ATATC ATAT
46030997 GTATGTCTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATC
Found at i:46038512 original size:28 final size:26
Alignment explanation
Indices: 46038466--46038517 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
46038456 ATTATAATGA
* *
46038466 AAAATTGACATGTAGTAAAGTATATT
1 AAAAGTGACATGTAGTAAAATATATT
46038492 AAAAGTGACATGTCATGTAAAATATA
1 AAAAGTGACATGT-A-GTAAAATATA
46038518 AAATATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 12 0.55
27 1 0.05
28 9 0.41
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.31
Consensus pattern (26 bp):
AAAAGTGACATGTAGTAAAATATATT
Found at i:46043051 original size:30 final size:30
Alignment explanation
Indices: 46043015--46043071 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
46043005 TATATTCTTC
*
46043015 TTCGGTCGTATC-TTCTTCCTCATCTACATA
1 TTCGGTCGCATCATT-TTCCTCATCTACATA
*
46043045 TTCGGTCGCATCATTTTTCTCATCTAC
1 TTCGGTCGCATCATTTTCCTCATCTAC
46043072 GCCTTTATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.16, C:0.30, G:0.11, T:0.44
Consensus pattern (30 bp):
TTCGGTCGCATCATTTTCCTCATCTACATA
Found at i:46045608 original size:24 final size:24
Alignment explanation
Indices: 46045581--46045639 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
46045571 CCCTAAACAC
* **
46045581 AAAAATCCTAAAATTAAAAATATT
1 AAAAACCCTAAAACAAAAAATATT
* *
46045605 AAAACCCCTAAACCAAAAAATATT
1 AAAAACCCTAAAACAAAAAATATT
46045629 AAAAACCCTAA
1 AAAAACCCTAA
46045640 CCCTAGGAGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.61, C:0.19, G:0.00, T:0.20
Consensus pattern (24 bp):
AAAAACCCTAAAACAAAAAATATT
Found at i:46051344 original size:37 final size:37
Alignment explanation
Indices: 46051303--46051442 Score: 147
Period size: 37 Copynumber: 3.8 Consensus size: 37
46051293 TAGCTTTTTG
*
46051303 GAGCAATTGGCATGTTATCGGGTGGATTAGCTCTTAT
1 GAGCAATTGGCGTGTTATCGGGTGGATTAGCTCTTAT
* * * * * *
46051340 GAGCATTTGGTGTGTTTTCGGTTGGACTAGCTCTT-C
1 GAGCAATTGGCGTGTTATCGGGTGGATTAGCTCTTAT
* *
46051376 GAAGAAATTGGCGTGTTATCGGGTGGATGAGCTCTTAT
1 G-AGCAATTGGCGTGTTATCGGGTGGATTAGCTCTTAT
* * * *
46051414 GAGCATTTGGTGTGTTTTCGGATGGATTA
1 GAGCAATTGGCGTGTTATCGGGTGGATTA
46051443 CCGTACTCGT
Statistics
Matches: 80, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
36 1 0.01
37 78 0.98
38 1 0.01
ACGTcount: A:0.19, C:0.12, G:0.32, T:0.37
Consensus pattern (37 bp):
GAGCAATTGGCGTGTTATCGGGTGGATTAGCTCTTAT
Found at i:46051398 original size:74 final size:74
Alignment explanation
Indices: 46051277--46051439 Score: 254
Period size: 74 Copynumber: 2.2 Consensus size: 74
46051267 CTGTTTTGAC
* * * * * *
46051277 GTGTTTTTGGTTGGACTAGCTTTTTGGAGCAATTGGCATGTTATCGGGTGGATTAGCTCTTATGA
1 GTGTTTTCGGTTGGACTAGCTCTTCGAAGAAATTGGCATGTTATCGGGTGGATGAGCTCTTATGA
46051342 GCATTTGGT
66 GCATTTGGT
*
46051351 GTGTTTTCGGTTGGACTAGCTCTTCGAAGAAATTGGCGTGTTATCGGGTGGATGAGCTCTTATGA
1 GTGTTTTCGGTTGGACTAGCTCTTCGAAGAAATTGGCATGTTATCGGGTGGATGAGCTCTTATGA
46051416 GCATTTGGT
66 GCATTTGGT
*
46051425 GTGTTTTCGGATGGA
1 GTGTTTTCGGTTGGA
46051440 TTACCGTACT
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 81 1.00
ACGTcount: A:0.17, C:0.12, G:0.33, T:0.39
Consensus pattern (74 bp):
GTGTTTTCGGTTGGACTAGCTCTTCGAAGAAATTGGCATGTTATCGGGTGGATGAGCTCTTATGA
GCATTTGGT
Found at i:46052621 original size:21 final size:20
Alignment explanation
Indices: 46052581--46052622 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
46052571 GACTCGAATT
*
46052581 GCCTCAAAGCTATTTTTAGG
1 GCCTCAAAGCTATATTTAGG
*
46052601 GCCTCAAAGGCTCTATTTAGG
1 GCCTCAAA-GCTATATTTAGG
46052622 G
1 G
46052623 ACGATATACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (20 bp):
GCCTCAAAGCTATATTTAGG
Found at i:46054606 original size:37 final size:37
Alignment explanation
Indices: 46054548--46054725 Score: 311
Period size: 37 Copynumber: 4.8 Consensus size: 37
46054538 GCTCAGACGA
* * * *
46054548 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
46054585 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
46054622 AATCTCCACACGTAGTCATCGGGTCTTACCCGAACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
46054659 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
46054696 AATCTCCACACGTAGTCATCGGGTCTTACC
1 AATCTCCACACGTAGTCATCGGGTCTTACC
46054726 TGGAATATAT
Statistics
Matches: 135, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 135 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:46055002 original size:47 final size:47
Alignment explanation
Indices: 46054940--46055181 Score: 322
Period size: 47 Copynumber: 5.1 Consensus size: 47
46054930 ACACGTTTTG
* * *
46054940 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
46054987 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
46055034 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * **
46055081 CATTGGCCATTCAGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
* ** *
46055132 CATTGGCCATTCGGCCTTATCACACATCCGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
46055179 CAT
1 CAT
46055182 AAAATCCTAA
Statistics
Matches: 170, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
47 126 0.74
49 6 0.04
51 38 0.22
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:46055051 original size:94 final size:96
Alignment explanation
Indices: 46054940--46055181 Score: 344
Period size: 98 Copynumber: 2.5 Consensus size: 96
46054930 ACACGTTTTG
* * * ** *
46054940 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCAGCCTT
* * *
46055005 AT-CTC-ATATATGCATGTTCACATTCATCA
66 ATACACAATATATACAGGTTCACATTCATCA
46055034 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCAGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCAGCCTT
*
46055099 ATCACACATATATATACGGGTTCACATTCATCA
66 AT-ACACA-ATATATACAGGTTCACATTCATCA
* *
46055132 CATTGGCCATTCGGCCTTATCACACATCCGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
46055182 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 61 0.46
96 2 0.02
98 69 0.52
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.32
Consensus pattern (96 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCAGCCTT
ATACACAATATATACAGGTTCACATTCATCA
Found at i:46065146 original size:47 final size:47
Alignment explanation
Indices: 46065080--46065459 Score: 643
Period size: 47 Copynumber: 8.1 Consensus size: 47
46065070 GAAATGATAG
*
46065080 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
46065127 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
46065174 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
46065221 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46065268 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46065315 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46065362 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
46065409 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46065456 TAAG
1 TAAG
46065460 TCCCGAAGGG
Statistics
Matches: 315, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 315 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:46065634 original size:37 final size:37
Alignment explanation
Indices: 46065578--46065656 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
46065568 CCGAGCTCTA
* *
46065578 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
46065615 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46065652 AAGAC
1 AAGAC
46065657 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46069237 original size:185 final size:183
Alignment explanation
Indices: 46068837--46069443 Score: 891
Period size: 185 Copynumber: 3.3 Consensus size: 183
46068827 ATTTAACAAA
* * *
46068837 ATTTTTTCTCTCATTTTCTCTCTTGCCAAACACCACTTTT-TTCTTCAAAATACATGGTCGGCTC
1 ATTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGCTC
*
46068901 ATTTCATCTACAATAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTCTGTAAATC
66 ATTTCATCTACAATAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAA-C
*
46068966 CACACCACACTTTCAGCTTAAAATCA-T-TTTTTTCCCTCCACTGTCGGTTGCC
130 CACACCACACTTTCAGCTTAAAATCATTGTTTTTTCCCTCCACTGTCGGCTGCC
* *
46069018 ATTTTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTTAAAACATATGGTTGGC
1 A--TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGC
*
46069083 TCATTTCATCTACAAGAATTTCCATTACCATGATTATAATCAT-CTTTTGTGTAATTTTTGTAAA
64 TCATTTCATCTACAATAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAA
* * *
46069147 CGCACACCATACCTTCAGCTTAAAATCATTGTTTTTTCCCTCCACTGTTGGCTGCC
129 C-CACACCACACTTTCAGCTTAAAATCATTGTTTTTTCCCTCCACTGTCGGCTGCC
* *
46069203 ATTTTTTCTCTTTTATTTTCTCTCTTACCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGC
1 ATTTTTTCTC--TCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGC
* ** * * *
46069268 GCATTTCATCTACAATAATTTCCACCACCATGATTGTAATCATGCTTTTATGCAATTTTTGTAAA
64 TCATTTCATCTACAATAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAA
* * * *
46069333 CCCACACCACACTTTCAACTTAAAACCATTGTTTTTTTCCCT-CGCTGTCAGCTGCC
129 -CCACACCACACTTTCAGCTTAAAATCATTG-TTTTTTCCCTCCACTGTCGGCTGCC
*
46069389 ATTTTTTCTCTCATTTTCTCTCTTGCCAAACACTATTTTTCTTCTTCAAAACACA
1 ATTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACA
46069444 ACATCTAGTT
Statistics
Matches: 383, Mismatches: 32, Indels: 19
0.88 0.07 0.04
Matches are distributed among these distances:
181 1 0.00
182 1 0.00
183 91 0.24
184 103 0.27
185 111 0.29
186 65 0.17
187 11 0.03
ACGTcount: A:0.24, C:0.26, G:0.08, T:0.42
Consensus pattern (183 bp):
ATTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGCTC
ATTTCATCTACAATAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAACC
ACACCACACTTTCAGCTTAAAATCATTGTTTTTTCCCTCCACTGTCGGCTGCC
Found at i:46069784 original size:14 final size:15
Alignment explanation
Indices: 46069757--46069785 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
46069747 ACAGTTAGAG
46069757 GGGAAGAGAGAAAGA
1 GGGAAGAGAGAAAGA
46069772 GGGAAGA-AGAAAGA
1 GGGAAGAGAGAAAGA
46069786 AAATGGAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (15 bp):
GGGAAGAGAGAAAGA
Found at i:46075828 original size:50 final size:50
Alignment explanation
Indices: 46075703--46075850 Score: 156
Period size: 50 Copynumber: 2.9 Consensus size: 50
46075693 GCACTGAAGG
* * * *
46075703 ACCATATCATGTAAGATCGTAACTGGGGGGTTATGACATTATATGGAAAGAAG
1 ACCATATC-TGTAAGATCATAACTGGTGGGTTAT-ACATCATAT-GAAAGAAA
*
46075756 ACCATATTCTGTAAGACCATAACTGGTGGGTTATATCATCATAT-AAA-AAA
1 ACCATA-TCTGTAAGATCATAACTGGTGGGTTATA-CATCATATGAAAGAAA
* *
46075806 ACCATATCGTGTAAGATTATAACTGGTGGGTTTTAACATCATATG
1 ACCATATC-TGTAAGATCATAACTGGTGGGTTAT-ACATCATATG
46075851 GGGAAGTTTG
Statistics
Matches: 82, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
49 2 0.02
50 38 0.46
51 4 0.05
52 1 0.01
53 35 0.43
54 2 0.02
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (50 bp):
ACCATATCTGTAAGATCATAACTGGTGGGTTATACATCATATGAAAGAAA
Found at i:46076071 original size:60 final size:59
Alignment explanation
Indices: 46075977--46076313 Score: 325
Period size: 60 Copynumber: 5.6 Consensus size: 59
46075967 AAAGGACAGT
* * * * *
46075977 CTTTGTGGAAAAACTCTAGACAAGAAAGCCTTTGTGGAAAGTATTGAATGTAAAGAATAC
1 CTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAG-ATGC
* * * ** *
46076037 ATTTGTGGCAAAACTCTATACAGGAAAGTCTTTGTGGTGAGTGA-TGTATGTAAATGATGC
1 CTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGGCAAGT-ACTGAATGTAAA-GATGC
* * *
46076097 CTTTGTGGAAAAAATCTTGACAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGATGC
1 CTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAA-GATGC
* * * * **
46076157 CTTCGTGGCAAAACACTGGACAGAAAAGCCTTTGTGGCAAGTGTTGAATGTAAATGATGC
1 CTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAA-GATGC
* * * * ** *
46076217 CTTTGTAGCCAAACTCTGGACAGAAAAGCCTTTGTGGTGAGTACTAAATGTAAAAGATGC
1 CTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGGCAAGTACTGAATGT-AAAGATGC
* * * **
46076277 TTTTGTGGCAAACCTCTAGAAAGTTAAGCCTTTGTGG
1 CTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGG
46076314 AAACCTTTGT
Statistics
Matches: 228, Mismatches: 45, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
59 1 0.00
60 222 0.97
61 5 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (59 bp):
CTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAGATGC
Found at i:46076190 original size:120 final size:120
Alignment explanation
Indices: 46075977--46076313 Score: 377
Period size: 120 Copynumber: 2.8 Consensus size: 120
46075967 AAAGGACAGT
* * * *
46075977 CTTTGTGGAAAAACTCTAGACAAGAAAGCCTTTGTGGAAAGTATTGAATGTAAAGAATACATTTG
1 CTTTGTGGAAAAACTCTAGACAGGAAAGCCTTTGTGGAAAGTACTGAATGTAAAGGATGCATTTG
* * * * ** *
46076042 TGGCAAAACTCTATACAGGAAAGTCTTTGTGGTGAGTGATGTATGTAAATGATGC
66 TGGCAAAACACTAGACAGAAAAGCCTTTGTGGCAAGTGATGAATGTAAATGATGC
* * * * *
46076097 CTTTGTGGAAAAAATCTTGACAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGATGCCTTCG
1 CTTTGTGGAAAAACTCTAGACAGGAAAGCCTTTGTGGAAAGTACTGAATGTAAAGGATGCATTTG
* *
46076162 TGGCAAAACACTGGACAGAAAAGCCTTTGTGGCAAGTGTTGAATGTAAATGATGC
66 TGGCAAAACACTAGACAGAAAAGCCTTTGTGGCAAGTGATGAATGTAAATGATGC
* ** * * ** * * *
46076217 CTTTGTAGCCAAACTCTGGACAGAAAAGCCTTTGTGGTGAGTACTAAATGTAAAAGATGCTTTTG
1 CTTTGTGGAAAAACTCTAGACAGGAAAGCCTTTGTGGAAAGTACTGAATGTAAAGGATGCATTTG
* * * **
46076282 TGGCAAACCTCTAGAAAGTTAAGCCTTTGTGG
66 TGGCAAAACACTAGACAGAAAAGCCTTTGTGG
46076314 AAACCTTTGT
Statistics
Matches: 181, Mismatches: 36, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
120 181 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (120 bp):
CTTTGTGGAAAAACTCTAGACAGGAAAGCCTTTGTGGAAAGTACTGAATGTAAAGGATGCATTTG
TGGCAAAACACTAGACAGAAAAGCCTTTGTGGCAAGTGATGAATGTAAATGATGC
Found at i:46078409 original size:148 final size:148
Alignment explanation
Indices: 46078050--46078452 Score: 384
Period size: 148 Copynumber: 2.7 Consensus size: 148
46078040 CGAATGCTTT
* * * * * ** * * *
46078050 GGGAAATGAAATTTTCATT-AGATTCCACAATCCGGTATTGCTATGTGCAGACCATGATGTGCGA
1 GGGACATGAAA-TTCCATTAAGATACCACCATACGGTATTGCTGGGTACAAACCATGATGTGTGA
* * * * * * *
46078114 AGCTCCGGGCCTTATGGAGGGGTCATTGTGGTGTTTGAGCATCAATATTAGAAATGACGAAATGA
65 AGCTCCGGGCCTTAGGGAGGGGACATTGCGGTGTTCGAGCATCAAGATTAGAAATGACAAAAAGA
* *
46078179 AGGTATGGGCAGATGAATA
130 AGGTATGAGCAAATGAATA
* * *
46078198 GGGACATGAAATTCCATTAAGATACCACCATACGGTATTGCTGGGTGCAAACCATAATATGTGAA
1 GGGACATGAAATTCCATTAAGATACCACCATACGGTATTGCTGGGTACAAACCATGATGTGTGAA
* * * *
46078263 GCTCTGGGCCTTAGGGAGGGGACATTGCGGTGTTCGAGTATCAAGGTTAGAAATGGCAAAACAG-
66 GCTCCGGGCCTTAGGGAGGGGACATTGCGGTGTTCGAGCATCAAGATTAGAAATGACAAAA-AGA
46078327 AGGTATGAGCAAATGAATA
130 AGGTATGAGCAAATGAATA
* * ** * * * **
46078346 GGGACATGGAATTCCATTAAGATGCTGCTATACGGTATTGTTTGGTACAAACTGTGATGTGTGAA
1 GGGACATGAAATTCCATTAAGATACCACCATACGGTATTGCTGGGTACAAACCATGATGTGTGAA
* * * * * *
46078411 GCTTCAGGCATT---GTGGGGACATTACGATGTTCGAGCATCAAG
66 GCTCCGGGCCTTAGGGAGGGGACATTGCGGTGTTCGAGCATCAAG
46078453 GTTAAATGTG
Statistics
Matches: 209, Mismatches: 44, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
145 26 0.12
147 6 0.03
148 176 0.84
149 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (148 bp):
GGGACATGAAATTCCATTAAGATACCACCATACGGTATTGCTGGGTACAAACCATGATGTGTGAA
GCTCCGGGCCTTAGGGAGGGGACATTGCGGTGTTCGAGCATCAAGATTAGAAATGACAAAAAGAA
GGTATGAGCAAATGAATA
Found at i:46081866 original size:17 final size:17
Alignment explanation
Indices: 46081844--46081877 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
46081834 ACCAACCTTT
46081844 TTCCATTACAAAAATTC
1 TTCCATTACAAAAATTC
*
46081861 TTCCATTAGAAAAATTC
1 TTCCATTACAAAAATTC
46081878 ACTCCTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.21, G:0.03, T:0.35
Consensus pattern (17 bp):
TTCCATTACAAAAATTC
Found at i:46082683 original size:3 final size:3
Alignment explanation
Indices: 46082675--46082723 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
46082665 AACTATTTCC
46082675 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
46082723 T
1 T
46082724 TACATAGTCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:46094828 original size:15 final size:17
Alignment explanation
Indices: 46094794--46094830 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
46094784 GTTTAATGGA
46094794 AAAATTATAAATAAATC
1 AAAATTATAAATAAATC
*
46094811 AAAATTA-AACTAAA-C
1 AAAATTATAAATAAATC
46094826 AAAAT
1 AAAAT
46094831 AAGACAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 6 0.32
16 6 0.32
17 7 0.37
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAATTATAAATAAATC
Found at i:46096680 original size:14 final size:16
Alignment explanation
Indices: 46096649--46096680 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
46096639 TTTCTCAATT
46096649 AATTTCAAATCATAGA
1 AATTTCAAATCATAGA
46096665 AATTTC-AATC-TAGA
1 AATTTCAAATCATAGA
46096679 AA
1 AA
46096681 AATAAGGGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 4 0.25
16 6 0.38
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.31
Consensus pattern (16 bp):
AATTTCAAATCATAGA
Found at i:46105576 original size:143 final size:142
Alignment explanation
Indices: 46105413--46106345 Score: 1485
Period size: 143 Copynumber: 6.5 Consensus size: 142
46105403 GATAATTGTG
* *
46105413 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
46105478 GTGACAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCGAATGG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGG
*
46105542 CCAATGTGATGA
131 CCGATGTGATGA
46105554 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
46105619 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTA
*
46105683 ATAGCCGATGTGATGA
127 ATGGCCGATGTGATGA
* *
46105699 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
46105764 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAA
46105829 TGGCCGATGTGATGA
128 TGGCCGATGTGATGA
* *
46105844 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAACGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
46105909 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATG
46105974 GCCGATGTGATGA
130 GCCGATGTGATGA
* *
46105987 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAACGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
46106052 CTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATG
46106117 GCCGATGTGATGA
130 GCCGATGTGATGA
46106130 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
46106195 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATGAGGCCTAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAAT
46106259 GGCCGATGTGATGA
129 GGCCGATGTGATGA
* * * * * * * * *
46106273 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGGCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
46106338 GTGATAAG
66 GTGATAAG
46106346 TCCCGAAGGG
Statistics
Matches: 751, Mismatches: 33, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
141 62 0.08
143 423 0.56
145 266 0.35
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (142 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGG
CCGATGTGATGA
Found at i:46105704 original size:192 final size:192
Alignment explanation
Indices: 46105413--46106345 Score: 1621
Period size: 192 Copynumber: 4.9 Consensus size: 192
46105403 GATAATTGTG
46105413 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
46105476 ATGTGACAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
46105541 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46105603 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
46105668 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
46105733 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46105795 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
46105860 ATGTGATAAGGCCTAATAGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
46105925 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
46105987 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAACGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * *
46106050 ATCTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAA
*
46106115 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
129 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46106179 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * *
46106242 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * *
46106307 GGCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
131 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
46106346 TCCCGAAGGG
Statistics
Matches: 715, Mismatches: 24, Indels: 10
0.95 0.03 0.01
Matches are distributed among these distances:
188 10 0.01
189 1 0.00
190 135 0.19
191 2 0.00
192 567 0.79
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (192 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:46106358 original size:47 final size:47
Alignment explanation
Indices: 46105413--46106345 Score: 1479
Period size: 47 Copynumber: 19.6 Consensus size: 47
46105403 GATAATTGTG
* *
46105413 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
46105460 ATGTGAAAGTGTATATATGTGACAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
46105507 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46105554 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46105603 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46105652 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
46105699 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46105746 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46105795 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46105844 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
46105891 ACGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46105938 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46105987 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
46106034 ACGTGAAAGTGTATATATCTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46106081 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46106130 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46106179 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46106226 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
46106273 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGGCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46106320 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
46106346 TCCCGAAGGG
Statistics
Matches: 829, Mismatches: 49, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
47 503 0.61
49 326 0.39
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:46108545 original size:38 final size:38
Alignment explanation
Indices: 46108481--46108555 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
46108471 AATCCGAGTT
*
46108481 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
46108519 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
46108556 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Done.