Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 156 of 230
Found at i:46108680 original size:40 final size:40
Alignment explanation
Indices: 46108609--46108968 Score: 580
Period size: 40 Copynumber: 9.1 Consensus size: 40
46108599 AGGTCTCGAC
46108609 GATG-ATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46108647 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46108687 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46108727 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
46108767 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46108807 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
46108847 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * *
46108887 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
46108927 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46108967 GA
1 GA
46108969 CATGTATTCG
Statistics
Matches: 302, Mismatches: 18, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
38 4 0.01
39 13 0.04
40 285 0.94
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:46112583 original size:47 final size:47
Alignment explanation
Indices: 46112531--46113222 Score: 1096
Period size: 47 Copynumber: 14.6 Consensus size: 47
46112521 GATAATTGTG
* *
46112531 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46112578 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
46112625 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46112672 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46112721 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
46112768 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46112815 ATATGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46112864 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
46112911 ACGTGAAAGTGTATATATGGGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46112958 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46113007 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46113056 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46113103 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
46113150 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46113197 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
46113223 TCCCGAAGGG
Statistics
Matches: 599, Mismatches: 40, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
47 417 0.70
49 182 0.30
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:46112638 original size:96 final size:94
Alignment explanation
Indices: 46112531--46113222 Score: 1096
Period size: 96 Copynumber: 7.3 Consensus size: 94
46112521 GATAATTGTG
* *
46112531 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
46112596 GTGATAAGGCCTAATAGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* *
46112625 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
46112690 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46112721 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
46112786 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
46112815 ATATGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
46112880 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
46112911 ACGTGAAAGTGTATATATGGGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
46112976 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
46113007 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
46113072 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46113103 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
46113168 GTGACAGGGCCGAGTGGCCAACGTGATGG
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
46113197 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
46113223 TCCCGAAGGG
Statistics
Matches: 553, Mismatches: 37, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
94 240 0.43
96 269 0.49
98 44 0.08
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:46112694 original size:143 final size:143
Alignment explanation
Indices: 46112531--46113222 Score: 1185
Period size: 143 Copynumber: 4.9 Consensus size: 143
46112521 GATAATTGTG
46112531 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
46112594 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
46112659 GCCAATGTGATGA
131 GCCAATGTGATGA
46112672 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
46112737 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
46112802 GCCAATGTGATGA
131 GCCAATGTGATGA
*
46112815 ATATGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
46112880 ATGTGATAAGGCCTAATAGCCGATGTGATGAACGTGAAAGTGTATATATGGGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
46112945 GCCAATGTGATGA
131 GCCAATGTGATGA
46112958 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* *
46113023 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
64 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
* *
46113088 TAGCCGATGTGATGA
129 TGGCCAATGTGATGA
*
46113103 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * * *
46113166 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
46113223 TCCCGAAGGG
Statistics
Matches: 528, Mismatches: 19, Indels: 8
0.95 0.03 0.01
Matches are distributed among these distances:
141 59 0.11
142 2 0.00
143 379 0.72
145 88 0.17
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGA
Found at i:46136989 original size:40 final size:40
Alignment explanation
Indices: 46136945--46137132 Score: 322
Period size: 40 Copynumber: 4.7 Consensus size: 40
46136935 GCAAACACAT
* * *
46136945 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
46136985 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
46137025 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
46137065 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
46137105 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
46137133 TCCAATGCTC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:46141685 original size:40 final size:40
Alignment explanation
Indices: 46141626--46141946 Score: 482
Period size: 40 Copynumber: 8.1 Consensus size: 40
46141616 AGGTCTCGAC
46141626 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46141665 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
46141705 GATGTATCCGGGTTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
46141745 GATGTATCCGGGCTAAGTCCCGAAGTGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46141785 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
46141825 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** *
46141865 GATATATCCGTGCTAAACCCCGAAGAGCATTCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
46141905 GTTATATCCGGGCTAGGTCCTGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46141945 GA
1 GA
46141947 CGTGTATTCG
Statistics
Matches: 256, Mismatches: 25, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
39 4 0.02
40 252 0.98
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:46144615 original size:47 final size:47
Alignment explanation
Indices: 46144561--46145341 Score: 1089
Period size: 47 Copynumber: 16.6 Consensus size: 47
46144551 TATTTGAATA
46144561 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
46144608 AATGTGAAAGTGTATATATATGTGATGAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
46144657 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
46144704 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTAATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
46144751 AATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
46144798 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
46144845 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
46144892 AATGTGAAAGTGTATATATATGTAATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
46144941 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
46144990 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
46145037 AATGTGAAAGTGTATATATATATGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
46145086 AATGTGAACATGTGTAT-T-TGTGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAA-A-GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
46145133 AATGTGAACA-TG-----ATGTGATAAGGCCAAATGG-CAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
46145174 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
46145221 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
46145268 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
46145315 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
46145342 TCCCGAAGGG
Statistics
Matches: 689, Mismatches: 29, Indels: 32
0.92 0.04 0.04
Matches are distributed among these distances:
41 22 0.03
42 18 0.03
45 2 0.00
46 18 0.03
47 441 0.64
48 1 0.00
49 183 0.27
50 1 0.00
51 3 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:46144937 original size:40 final size:42
Alignment explanation
Indices: 46144891--46145083 Score: 115
Period size: 49 Copynumber: 4.2 Consensus size: 42
46144881 CCGATGTGAT
46144891 GAATGTGAAAGTGTATATATATGTAATAAGGCCTAATGGCCGATGTG
1 GAATGTGAAAGTGTATATATATGTAATAAGGCCTAATGGCC-----G
*
46144938 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 --GAATGTGAAAGTGTATATATATGTAATAAGGCCTAATGGCC-----G
* *
46144987 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
1 --GAATGTGAAAGTGTATATATATGTAATAAGGCCTAATGGCC-----G
* * *
46145034 ATGAATGTGAAAGTGTATATATATATGATAAGGCCGAATGGCC-
1 --GAATGTGAAAGTGTATATATATGTAATAAGGCCTAATGGCCG
46145077 -AATGTGA
1 GAATGTGA
46145084 TGAATGTGAA
Statistics
Matches: 138, Mismatches: 4, Indels: 13
0.89 0.03 0.08
Matches are distributed among these distances:
40 7 0.05
47 45 0.33
49 86 0.62
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (42 bp):
GAATGTGAAAGTGTATATATATGTAATAAGGCCTAATGGCCG
Found at i:46145219 original size:22 final size:22
Alignment explanation
Indices: 46145192--46145313 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
46145182 CATGTGTATG
46145192 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
46145214 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
46145239 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
46145261 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
46145286 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
46145308 TGTGAT
1 TGTGAT
46145314 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:46147834 original size:38 final size:38
Alignment explanation
Indices: 46147770--46147844 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
46147760 AATCCGAGTT
*
46147770 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
46147808 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
46147845 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:46147957 original size:40 final size:40
Alignment explanation
Indices: 46147898--46148178 Score: 420
Period size: 40 Copynumber: 7.0 Consensus size: 40
46147888 AGGTCTCGAC
46147898 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46147937 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
46147977 GATGTATCCGGGTTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
46148017 GATGTATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46148057 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* ** * *
46148097 GATGTATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
46148137 GTTATATCCGGGCTAGGTCCTGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46148177 GA
1 GA
46148179 CGTGTATTCG
Statistics
Matches: 218, Mismatches: 23, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
39 4 0.02
40 214 0.98
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:46149578 original size:84 final size:85
Alignment explanation
Indices: 46149434--46149611 Score: 340
Period size: 84 Copynumber: 2.1 Consensus size: 85
46149424 GGCCGGCCAT
46149434 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
46149499 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
46149519 GAGCATGGGTGGACAAGATGTTATGGCT-AAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
46149583 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
46149603 GGGCATGGG
1 GAGCATGGG
46149612 CAATAAAATA
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 64 0.70
85 28 0.30
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:46151033 original size:47 final size:47
Alignment explanation
Indices: 46150875--46151549 Score: 952
Period size: 47 Copynumber: 14.6 Consensus size: 47
46150865 TATTTGAATA
46150875 AATGTGAAAGTGTAT-TATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
46150921 AATGTGAAAGTGTATATATATGTGATGAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
46150970 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAG-CGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
46151016 AATGTGAAA-TGTATATATGTGATAAGGCCTAAT-GCCGATGT-ATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
46151060 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
46151107 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
46151153 AATGTGAAAGTGTATATATGTGATAAGGCC-AATGG-C-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
46151197 AATGTG-AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
46151243 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
46151290 TATGTGAACATGTGTAT-T-TGTGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAA-A-GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * *
46151337 AATGTGAACA-TGTGTATGTGTGATAAGGTCAAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
46151384 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
46151431 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
46151478 AATGTGAAAGTGTATATAT-TGATAAGG-CGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
46151523 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
46151550 TCCCGAAGGG
Statistics
Matches: 592, Mismatches: 20, Indels: 34
0.92 0.03 0.05
Matches are distributed among these distances:
43 23 0.04
44 33 0.06
45 98 0.17
46 107 0.18
47 279 0.47
48 5 0.01
49 47 0.08
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:46151241 original size:22 final size:22
Alignment explanation
Indices: 46151213--46151288 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
46151203 AAGTGTATAT
46151213 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
46151235 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
46151259 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
46151282 ATGTGAT
1 ATGTGAT
46151289 GTATGTGAAC
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:46151382 original size:22 final size:22
Alignment explanation
Indices: 46151308--46151382 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
46151298 CATGTGTATT
*
46151308 TGTGATAAGGCCAAATGGCCAA
1 TGTGATAAGGTCAAATGGCCAA
* * * *
46151330 TGTGATGAATGTGAACATGTG-TATG
1 TGTGAT-AAGGTCAA-ATG-GCCA-A
46151355 TGTGATAAGGTCAAATGGCCAA
1 TGTGATAAGGTCAAATGGCCAA
46151377 TGTGAT
1 TGTGAT
46151383 GAATGTGAAC
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
22 13 0.33
23 9 0.23
24 10 0.26
25 7 0.18
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (22 bp):
TGTGATAAGGTCAAATGGCCAA
Found at i:46154066 original size:38 final size:38
Alignment explanation
Indices: 46153975--46154049 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
46153965 AATCCGAGTT
* * *
46153975 TAAAGACCCGCTGACTATATGA-AGAGATTATGTCCGGG
1 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGGG
46154013 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
1 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
46154050 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGG
Found at i:46154162 original size:40 final size:40
Alignment explanation
Indices: 46154103--46154383 Score: 402
Period size: 40 Copynumber: 7.0 Consensus size: 40
46154093 AGGTCTCGAC
46154103 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46154142 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
46154182 GATGTATCCGGGTTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46154222 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
46154262 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * *
46154302 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
46154342 GTTATATCCGGGCTAGGTCCTGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
46154382 GA
1 GA
46154384 CGAGTATTCG
Statistics
Matches: 218, Mismatches: 23, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
39 4 0.02
40 214 0.98
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:46155780 original size:85 final size:85
Alignment explanation
Indices: 46155637--46155815 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
46155627 GGCCGGCCAT
46155637 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
46155702 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
46155722 GAGCATGGGTGGATAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
46155787 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
46155807 GGGCATGGG
1 GAGCATGGG
46155816 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:46157137 original size:47 final size:47
Alignment explanation
Indices: 46157083--46158010 Score: 1319
Period size: 47 Copynumber: 19.6 Consensus size: 47
46157073 TATTTGAATA
*
46157083 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
46157130 AATGTGAAAGTGTATATATATGTGATGAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
46157179 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
46157226 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
46157273 AATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
46157320 AATGTGAAAGTGTATATATGTGATGAGGCGTAATAGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
46157367 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46157414 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
46157463 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
46157512 AATGTGAACGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
46157559 AATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
46157606 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
46157653 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
46157702 AATGTGAACATGTGTAT-T-TGTGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAA-A-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
46157749 AATGTGAACA-TGTGTATGTGTGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
46157796 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
46157843 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
46157890 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
46157937 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
46157984 GATGTGGAAGTATATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
46158011 TCCCGAAGGG
Statistics
Matches: 832, Mismatches: 38, Indels: 22
0.93 0.04 0.02
Matches are distributed among these distances:
45 4 0.00
46 2 0.00
47 640 0.77
48 1 0.00
49 181 0.22
50 1 0.00
51 3 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:46157747 original size:22 final size:22
Alignment explanation
Indices: 46157720--46157794 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
46157710 CATGTGTATT
46157720 TGTGATAAGGCCAAATGGCCAA
1 TGTGATAAGGCCAAATGGCCAA
* ** * *
46157742 TGTGATGAATGTGAACATGTG-TATG
1 TGTGAT-AAGGCCAA-ATG-GCCA-A
46157767 TGTGATAAGGCCAAATGGCCAA
1 TGTGATAAGGCCAAATGGCCAA
46157789 TGTGAT
1 TGTGAT
46157795 GAATGTGAAC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 13 0.34
23 9 0.24
24 9 0.24
25 7 0.18
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCAAATGGCCAA
Found at i:46157888 original size:22 final size:22
Alignment explanation
Indices: 46157861--46157982 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
46157851 CATGTGTATG
46157861 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
46157883 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
46157908 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
46157930 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
46157955 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
46157977 TGTGAT
1 TGTGAT
46157983 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:46167561 original size:11 final size:11
Alignment explanation
Indices: 46167545--46167576 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
46167535 CACTGCATAC
46167545 TTACCATAGCT
1 TTACCATAGCT
46167556 TTACCATAGCT
1 TTACCATAGCT
46167567 TTACCATAGC
1 TTACCATAGC
46167577 ATTAATTGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.34
Consensus pattern (11 bp):
TTACCATAGCT
Found at i:46169303 original size:34 final size:33
Alignment explanation
Indices: 46169260--46169340 Score: 112
Period size: 34 Copynumber: 2.5 Consensus size: 33
46169250 TCAGTGAATA
*
46169260 TTATCCTTTCTTCTTATCTTTCCTTCCTTACACT
1 TTATCCTTTCTTCTTATCTTTCATTCCTTACA-T
*
46169294 TTATCCTTTCTTCTTTTCTTTCATTCCTTACAT
1 TTATCCTTTCTTCTTATCTTTCATTCCTTACAT
*
46169327 TT-TCCCTTC-TCTTA
1 TTATCCTTTCTTCTTA
46169341 GACTTGGCTA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
31 4 0.09
32 6 0.14
33 3 0.07
34 30 0.70
ACGTcount: A:0.11, C:0.31, G:0.00, T:0.58
Consensus pattern (33 bp):
TTATCCTTTCTTCTTATCTTTCATTCCTTACAT
Found at i:46172523 original size:20 final size:20
Alignment explanation
Indices: 46172500--46172537 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
46172490 TAAATTTATT
*
46172500 ATAAGTGAATGAAATGGTAA
1 ATAAGTAAATGAAATGGTAA
46172520 ATAAGTAAATGAAATGGT
1 ATAAGTAAATGAAATGGT
46172538 TTATCGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.24, T:0.26
Consensus pattern (20 bp):
ATAAGTAAATGAAATGGTAA
Found at i:46174161 original size:28 final size:28
Alignment explanation
Indices: 46174105--46174161 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
46174095 ATACGGGGTG
* * *
46174105 TTACATCGTGTTTACTGTCCCGACGGAC
1 TTACATCGTCTTTACTGTCCCAACAGAC
*
46174133 TTACCTCGTCTTTACTGTCCCAACAGAC
1 TTACATCGTCTTTACTGTCCCAACAGAC
46174161 T
1 T
46174162 ATTTATGTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.33
Consensus pattern (28 bp):
TTACATCGTCTTTACTGTCCCAACAGAC
Found at i:46174195 original size:33 final size:33
Alignment explanation
Indices: 46174143--46174231 Score: 110
Period size: 33 Copynumber: 2.7 Consensus size: 33
46174133 TTACCTCGTC
46174143 TTTACTGTCCCAACAGACTAT-T-TATGTTCTGTG
1 TTTACTGTCCCAACAGACTATCTCTAT-TT-TGTG
* **
46174176 TTTATTGTCCCAATGGACTATCTCTATTTTGTG
1 TTTACTGTCCCAACAGACTATCTCTATTTTGTG
*
46174209 TTTACTGCCCCAACAGACTATCT
1 TTTACTGTCCCAACAGACTATCT
46174232 TTGTTATGCC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
33 41 0.87
34 3 0.06
35 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (33 bp):
TTTACTGTCCCAACAGACTATCTCTATTTTGTG
Found at i:46174415 original size:51 final size:51
Alignment explanation
Indices: 46174350--46174470 Score: 143
Period size: 51 Copynumber: 2.4 Consensus size: 51
46174340 CATCATGACA
* * * * *
46174350 TCTTTCATCAATGGTCTTACGCTACGTACCTCATATCAGACTGCCATAGCC
1 TCTTTCATCTATGGTCTTACGCCACATACCTCAAACCAGACTGCCATAGCC
* * * * *
46174401 TCTTTCATCTATGGTCTTATGCCATATACCTTAAACCAGACTGTCATGGCC
1 TCTTTCATCTATGGTCTTACGCCACATACCTCAAACCAGACTGCCATAGCC
*
46174452 TCTTTCTTCTATGGTCTTA
1 TCTTTCATCTATGGTCTTA
46174471 TACCATATAC
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.21, C:0.28, G:0.13, T:0.37
Consensus pattern (51 bp):
TCTTTCATCTATGGTCTTACGCCACATACCTCAAACCAGACTGCCATAGCC
Found at i:46183621 original size:33 final size:33
Alignment explanation
Indices: 46183579--46183952 Score: 352
Period size: 33 Copynumber: 11.3 Consensus size: 33
46183569 TAACATCAAT
* * * *
46183579 AGAGAAAGTCTGTTGGGATAGTAAACACAGAAC
1 AGAGAAAGTCCGCTGAGACAGTAAACACAGAAC
* ** *
46183612 AAAGAAAGTCCATTGGGACAGTAAACACAGAAC
1 AGAGAAAGTCCGCTGAGACAGTAAACACAGAAC
** * *
46183645 AGAGAAAGTCTACTGGGACAATAAACACAGAAC
1 AGAGAAAGTCCGCTGAGACAGTAAACACAGAAC
* * * * ** *
46183678 AAAAAAAGTCCACTGAGCCAACAAACACAGAAT
1 AGAGAAAGTCCGCTGAGACAGTAAACACAGAAC
* * *
46183711 AGAGAAAGTTCGCTGAGATAGTAAACATAGAAC
1 AGAGAAAGTCCGCTGAGACAGTAAACACAGAAC
* *
46183744 AGAGAAAGTCTGCTGGGACAGTAAACACAGAAC
1 AGAGAAAGTCCGCTGAGACAGTAAACACAGAAC
* * * * * *
46183777 AGAAAAAGTCCACTGAGCCATTAAATACAGAAT
1 AGAGAAAGTCCGCTGAGACAGTAAACACAGAAC
* * * *
46183810 AGAAAAAGTCCGCTGAGATAGTAAGCACAGAAT
1 AGAGAAAGTCCGCTGAGACAGTAAACACAGAAC
* * * *
46183843 AAAGAAAGTCCGCTAAGATAGTAAACATAGAAC
1 AGAGAAAGTCCGCTGAGACAGTAAACACAGAAC
* *
46183876 AGAGAAAGTCCGCTGAGATAGTAAACACAGAAT
1 AGAGAAAGTCCGCTGAGACAGTAAACACAGAAC
* ** *
46183909 AGAGATAGTCTACTGAGACAATAAACACAGAAC
1 AGAGAAAGTCCGCTGAGACAGTAAACACAGAAC
46183942 AGAGAAAGTCC
1 AGAGAAAGTCC
46183953 ACCAGGACAA
Statistics
Matches: 279, Mismatches: 62, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 279 1.00
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.14
Consensus pattern (33 bp):
AGAGAAAGTCCGCTGAGACAGTAAACACAGAAC
Found at i:46187928 original size:24 final size:24
Alignment explanation
Indices: 46187888--46187933 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
46187878 GTCAAGATTA
*
46187888 TTATTTAATTAATATAATATATTC
1 TTATTTAATTAATATAAAATATTC
*
46187912 TTATTTAAGTTTA-ATAAAATAT
1 TTATTTAA-TTAATATAAAATAT
46187934 GTAAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
TTATTTAATTAATATAAAATATTC
Found at i:46189208 original size:8 final size:8
Alignment explanation
Indices: 46189197--46189259 Score: 51
Period size: 8 Copynumber: 7.9 Consensus size: 8
46189187 TATTATTAAA
46189197 TTATTATT
1 TTATTATT
46189205 TTATT-TT
1 TTATTATT
*
46189212 TAATGT-TT
1 TTAT-TATT
46189220 TTATTATT
1 TTATTATT
**
46189228 CCCATTATT
1 -TTATTATT
46189237 TTATTATT
1 TTATTATT
46189245 TTATTTATT
1 TTA-TTATT
46189254 TT-TTAT
1 TTATTAT
46189260 ACTTTCATGT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
7 10 0.22
8 22 0.49
9 13 0.29
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (8 bp):
TTATTATT
Found at i:46204851 original size:20 final size:21
Alignment explanation
Indices: 46204805--46204855 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
46204795 GCGGTGGTAA
**
46204805 TGAGATTAGATACTGTAGCGG
1 TGAGATTAGATACTGTAGCAC
46204826 TGAGATTAGATACTGT-GCAC
1 TGAGATTAGATACTGTAGCAC
46204846 TGAGATTAGA
1 TGAGATTAGA
46204856 AACAATGGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.29
Consensus pattern (21 bp):
TGAGATTAGATACTGTAGCAC
Found at i:46205095 original size:21 final size:21
Alignment explanation
Indices: 46205071--46205110 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
46205061 TTTCTTTAGC
*
46205071 CATCAACGTTTTCTTTTTTCT
1 CATCAAAGTTTTCTTTTTTCT
*
46205092 CATCAAAGTTTTTTTTTTT
1 CATCAAAGTTTTCTTTTTT
46205111 ACTTTTCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.05, T:0.60
Consensus pattern (21 bp):
CATCAAAGTTTTCTTTTTTCT
Found at i:46219328 original size:30 final size:30
Alignment explanation
Indices: 46219292--46219357 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
46219282 ATTTTATACA
* *
46219292 TCATCATTATCTCATTTTGCCATTACATTT
1 TCATCATTATCTCATTTTGCCACTACATTC
46219322 TCATCATTATCTCATTTTGCCACTACATTC
1 TCATCATTATCTCATTTTGCCACTACATTC
46219352 TCATCA
1 TCATCA
46219358 CGATATTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.24, C:0.27, G:0.03, T:0.45
Consensus pattern (30 bp):
TCATCATTATCTCATTTTGCCACTACATTC
Found at i:46222318 original size:42 final size:42
Alignment explanation
Indices: 46222230--46222383 Score: 202
Period size: 43 Copynumber: 3.6 Consensus size: 42
46222220 ATGCCGTTAT
* ** * *
46222230 AGAACATGACCTTTAACGGCATTTTACCCATAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTA-TCACAAACGCCGCTAA
*
46222273 AGAACATGACCTTTAGCGGCGCTTTATCACAAACGCTGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTATCACAAACGCCGCTAA
* *
46222315 AGAACATGACATTTAGTGGCGCTTTTATCACAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGCGC-TTTATCACAAACGCCGCTAA
*
46222358 AGAACATGATCTTTAGCGGCG-TTTAT
1 AGAACATGACCTTTAGCGGCGCTTTAT
46222384 AAAAATATGC
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
41 5 0.05
42 33 0.34
43 60 0.61
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
AGAACATGACCTTTAGCGGCGCTTTATCACAAACGCCGCTAA
Found at i:46228421 original size:61 final size:61
Alignment explanation
Indices: 46228356--46228546 Score: 221
Period size: 61 Copynumber: 3.2 Consensus size: 61
46228346 ATTTTATAGT
46228356 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
* * * ** * * * * * *
46228417 ATTATATATTTTTAATAAATTATATTTA-ATAATAATTATTTTAA-ATT-A-TATTTTA-TAGT
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAA-TA-TTTAATATTAAGAATTTTATTA-A
46228476 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
46228537 ATTATATATT
1 ATTATATATT
46228547 TTAATTGAAA
Statistics
Matches: 100, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
58 7 0.07
59 31 0.31
60 14 0.14
61 41 0.41
62 7 0.07
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (61 bp):
ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
Found at i:46228440 original size:120 final size:120
Alignment explanation
Indices: 46228296--46228581 Score: 522
Period size: 120 Copynumber: 2.4 Consensus size: 120
46228286 AAGTGAAGGG
*
46228296 AATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
1 AATTATATATTTTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
46228361 ATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTA
66 ATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTA
46228416 AATTATATATTTTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
1 AATTATATATTTTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
46228481 ATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTA
66 ATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTA
*
46228536 AATTATATA-TTTTAATTGAAA-TATATTTAATAATAATTATGTTAAA
1 AATTATATATTTTTAA-T-AAATTATATTTAATAATAATTATTTTAAA
46228582 ATATGATTAA
Statistics
Matches: 162, Mismatches: 2, Indels: 4
0.96 0.01 0.02
Matches are distributed among these distances:
119 6 0.04
120 153 0.94
121 3 0.02
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (120 bp):
AATTATATATTTTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
ATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTA
Found at i:46228787 original size:44 final size:45
Alignment explanation
Indices: 46228724--46228820 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 45
46228714 CTATTACACC
* *
46228724 TCCATTCCATTCAACCAAACACA-AGAA-TACTATTACGCCTCTAT
1 TCCATTACATTAAACCAAACA-ATAGAATTACTATTACGCCTCTAT
* *
46228768 TCCATTACATTAAACCAAACAATTGAATTGCTATTACGCCTCTAT
1 TCCATTACATTAAACCAAACAATAGAATTACTATTACGCCTCTAT
46228813 TCCATTAC
1 TCCATTAC
46228821 GCCTCTATTC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
43 1 0.02
44 22 0.47
45 24 0.51
ACGTcount: A:0.35, C:0.29, G:0.05, T:0.31
Consensus pattern (45 bp):
TCCATTACATTAAACCAAACAATAGAATTACTATTACGCCTCTAT
Found at i:46228821 original size:16 final size:16
Alignment explanation
Indices: 46228800--46228832 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
46228790 TTGAATTGCT
46228800 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
46228816 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
46228832 A
1 A
46228833 ATACAGCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:46230672 original size:7 final size:7
Alignment explanation
Indices: 46230632--46230872 Score: 80
Period size: 7 Copynumber: 33.9 Consensus size: 7
46230622 ACTAATTAAT
*
46230632 CTAAATC
1 CTAAACC
46230639 CTAAACCC
1 CTAAA-CC
*
46230647 CTAACCC
1 CTAAACC
*
46230654 CT-ATCTC
1 CTAAAC-C
46230661 CTAAACC
1 CTAAACC
*
46230668 CTAAATC
1 CTAAACC
* *
46230675 ATAAAAC
1 CTAAACC
*
46230682 TTAAACC
1 CTAAACC
*
46230689 ATAAACC
1 CTAAACC
*
46230696 TTAAATCC
1 CTAAA-CC
*
46230704 CT-AACA
1 CTAAACC
*
46230710 CTTAACC
1 CTAAACC
*
46230717 CTTAACCC
1 C-TAAACC
46230725 CTAAACC
1 CTAAACC
*
46230732 TTAAACC
1 CTAAACC
*
46230739 C-CAACTC
1 CTAAAC-C
*
46230746 TTAAACC
1 CTAAACC
*
46230753 ATAAACC
1 CTAAACC
*
46230760 ATAAACC
1 CTAAACC
*
46230767 AC-AATCC
1 -CTAAACC
46230774 CTAAACC
1 CTAAACC
* *
46230781 CATAATCT
1 C-TAAACC
*
46230789 ATAAACC
1 CTAAACC
*
46230796 TTAAA--
1 CTAAACC
*
46230801 ATAGTAACTC
1 CTA--AAC-C
*
46230811 TTAAACC
1 CTAAACC
*
46230818 TTAAACC
1 CTAAACC
*
46230825 TTAAACC
1 CTAAACC
*
46230832 TTAAACC
1 CTAAACC
46230839 CTAAACC
1 CTAAACC
* *
46230846 ATATACC
1 CTAAACC
46230853 CTAAACC
1 CTAAACC
*
46230860 ATAAACC
1 CTAAACC
46230867 CTAAAC
1 CTAAAC
46230873 TATAATGATA
Statistics
Matches: 177, Mismatches: 41, Indels: 32
0.71 0.16 0.13
Matches are distributed among these distances:
5 2 0.01
6 9 0.05
7 139 0.79
8 25 0.14
10 2 0.01
ACGTcount: A:0.43, C:0.34, G:0.00, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:46231229 original size:40 final size:40
Alignment explanation
Indices: 46231185--46231277 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 40
46231175 TTTTTTGTGG
* * * *
46231185 CGTTTTTTATAAAGCGCTGCTAAAGCTCGATCTATAGCGA
1 CGTTTTTCAAAAAGCGCCGCTAAAGCTCAATCTATAGCGA
* * * *
46231225 CGTTTTTCAAAAAGTGCCGCTAATGCTTAATCTATAGCGG
1 CGTTTTTCAAAAAGCGCCGCTAAAGCTCAATCTATAGCGA
46231265 CGTTTTTCAAAAA
1 CGTTTTTCAAAAA
46231278 ACACCACTAG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (40 bp):
CGTTTTTCAAAAAGCGCCGCTAAAGCTCAATCTATAGCGA
Found at i:46231403 original size:40 final size:40
Alignment explanation
Indices: 46231359--46231445 Score: 102
Period size: 40 Copynumber: 2.2 Consensus size: 40
46231349 AAAAGTGCCA
* *
46231359 CTAATGGTCGACCTATAGCGGCGTTATTCAAAAAGCACCG
1 CTAATGCTCGACCTATAACGGCGTTATTCAAAAAGCACCG
* * * * **
46231399 CTAATGCTCGATCTATAATGGTGTTTTTCAAAAAGTGCCG
1 CTAATGCTCGACCTATAACGGCGTTATTCAAAAAGCACCG
46231439 CTAATGC
1 CTAATGC
46231446 CACTAATGCT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (40 bp):
CTAATGCTCGACCTATAACGGCGTTATTCAAAAAGCACCG
Found at i:46231457 original size:155 final size:155
Alignment explanation
Indices: 46231211--46231600 Score: 528
Period size: 155 Copynumber: 2.5 Consensus size: 155
46231201 CTGCTAAAGC
* * * **
46231211 TCGATCTATAGCGACGTTTTTCAAAAAGTGCCGCTAATGCTTAATCTATAGCGGCGTTTTTCAAA
1 TCGACCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAA
* * * * * *
46231276 AAACACCACTAGTGCCACTAAAGCTCAACATAAAATGATGGCGTTGTGCTTAATTTTTTTGCCGC
66 AAGCACCACTAATGCCACTAAAGCTCAACATAAAACGACGACATTGTGCTTAATTTTTTTGCCGC
*
46231341 GTTTTCCAAAAAGTGCCACTAATGG
131 GTTTTCCAAAAAGCGCCACTAATGG
* * ** *
46231366 TCGACCTATAGCGGCGTTATTCAAAAAGCACCGCTAATGCTCGATCTATAATGGTGTTTTTCAAA
1 TCGACCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAA
** * * * *
46231431 AAGTGCCGCTAATGCCACTAATGCTCAACATAAAACGACGACATTGTGCTTAATTTTTTTTCGGC
66 AAGCACCACTAATGCCACTAAAGCTCAACATAAAACGACGACATTGTGCTTAATTTTTTTGCCGC
*
46231496 GTTTTTCAAAAAGCGCCACTAATGG
131 GTTTTCCAAAAAGCGCCACTAATGG
* * *
46231521 TCGACATATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCGGCGTTTTTAAAA
1 TCGACCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAA
*
46231586 AAGCACCACAAATGC
66 AAGCACCACTAATGC
46231601 TTAATCTATA
Statistics
Matches: 199, Mismatches: 36, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
155 199 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (155 bp):
TCGACCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAA
AAGCACCACTAATGCCACTAAAGCTCAACATAAAACGACGACATTGTGCTTAATTTTTTTGCCGC
GTTTTCCAAAAAGCGCCACTAATGG
Found at i:46231547 original size:40 final size:40
Alignment explanation
Indices: 46231492--46231680 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
46231482 AATTTTTTTT
* *
46231492 CGGCGTTTTTCAAAAAGCGCCACTAATGGTCGA-CATATAG
1 CGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATC-TATAG
*
46231532 CGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAG
1 CGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAG
* * * * **
46231572 CGGCGTTTTTAAAAAAGCACCACAAATGCTTAATCTATAG
1 CGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAG
* * *
46231612 CAGAGTTTTTCAAAAAGTGCCGCTAATGCTCGATCTATAG
1 CGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAG
* *
46231652 CGGTGTTTTTCAAAAAGCACCGCTAATGC
1 CGGCGTTTTTCAAAAAGCGCCGCTAATGC
46231681 CACTACAGCT
Statistics
Matches: 126, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
40 125 0.99
41 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (40 bp):
CGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAG
Found at i:46239667 original size:365 final size:368
Alignment explanation
Indices: 46238993--46239680 Score: 1087
Period size: 365 Copynumber: 1.9 Consensus size: 368
46238983 CAAATTCTAG
*
46238993 TTATTTTGTGTAAAATTAACATTTATACCTAGGGTTACAAGGGTATGGATGGCACACACATTAAA
1 TTATTTTGTGTAAAATTAACATCTATACCTAGGGTTACAAGGGTATGGATGGCACACACATTAAA
* * *
46239058 AATAATGGATTTTGTAAAAAAAAATAATTATTTTGCATGAGAAATGATTTGAACTTAGAACCTCA
66 AACAATGGATTTTGT-AAAAAAAATAATTATTTTGCATGAGAAAGGATTCGAACTTAGAACCTCA
*** * *
46239123 ATTTAATTTTTGTGCTTTTTCATTTATCAATTAACCACTAGGCTATTTCTTTATATTTGAAATAA
130 ATTTAATTTGCATGCTTTTGCATTTATCAATTAACCACTAGGCTATTTCCTTATATTTGAAATAA
* *
46239188 TTTTACAATATTTAATTTAAAAATAAGGTGTGTCACATACTAGGGTTTGAGGCAAAATTAACAAA
195 TTTTACAATATTTAATTTAAAAACAAGGCGTGTCACATACTAGGGTTTGAGGCAAAATTAACAAA
*
46239253 ATAATAAAAATGGTGAGGGAGAAGGGATTTGAACTTGGATTTCAAGGAACGTTCCACTAACACTT
260 ATAATAAAAATGGTGAGGGAGAAGGGATTTGAACTTGGATTTCAAGGAACGTTCCACGAACACTT
46239318 ATCCAATAAAATAATATATTATTTATTCCTAAACCCTAAACTAA
325 ATCCAATAAAATAATATATTATTTATTCCTAAACCCTAAACTAA
* * *
46239362 TTATTTTGTGTAAAATTATCATCTATACCTAGGGTTACAAGGTTATGGATGGCATACACATTAAA
1 TTATTTTGTGTAAAATTAACATCTATACCTAGGGTTACAAGGGTATGGATGGCACACACATTAAA
* * * * * *
46239427 AACAATGGATTTTGT-ATAAAAA-AGTTGTTTTGCATGGGAAAGGATTCGAACTTGGGACCTCAA
66 AACAATGGATTTTGTAAAAAAAATAATTATTTTGCATGAGAAAGGATTCGAACTTAGAACCTCAA
* *
46239490 TTTAATTTGCATGCTTTTGCATTTATCAATTAACCACTAGGCTATTTCCTTCTTTTTGAAATAAT
131 TTTAATTTGCATGCTTTTGCATTTATCAATTAACCACTAGGCTATTTCCTTATATTTGAAATAAT
* *
46239555 TTTGA-AATA-TTATTTTAAAAACAAGGCGTGTTACATACTAGGGTTTGAGGCAAAATTAACAAA
196 TTT-ACAATATTTAATTTAAAAACAAGGCGTGTCACATACTAGGGTTTGAGGCAAAATTAACAAA
* *
46239618 ATATTAAAAATGGTGAGGGAGAAGGGATTTGAACTTGGATTTCAAGGAACGTTTCACGAACAC
260 ATAATAAAAATGGTGAGGGAGAAGGGATTTGAACTTGGATTTCAAGGAACGTTCCACGAACAC
46239681 ATATTCAACA
Statistics
Matches: 291, Mismatches: 27, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
365 110 0.38
366 99 0.34
367 7 0.02
369 75 0.26
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (368 bp):
TTATTTTGTGTAAAATTAACATCTATACCTAGGGTTACAAGGGTATGGATGGCACACACATTAAA
AACAATGGATTTTGTAAAAAAAATAATTATTTTGCATGAGAAAGGATTCGAACTTAGAACCTCAA
TTTAATTTGCATGCTTTTGCATTTATCAATTAACCACTAGGCTATTTCCTTATATTTGAAATAAT
TTTACAATATTTAATTTAAAAACAAGGCGTGTCACATACTAGGGTTTGAGGCAAAATTAACAAAA
TAATAAAAATGGTGAGGGAGAAGGGATTTGAACTTGGATTTCAAGGAACGTTCCACGAACACTTA
TCCAATAAAATAATATATTATTTATTCCTAAACCCTAAACTAA
Found at i:46243461 original size:13 final size:13
Alignment explanation
Indices: 46243445--46243484 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
46243435 GGGGGTAGGA
46243445 TTCTGTATATCTG
1 TTCTGTATATCTG
*
46243458 TTCTGCATATCTG
1 TTCTGTATATCTG
46243471 ATTCTGT-TATCTG
1 -TTCTGTATATCTG
46243484 T
1 T
46243485 AACTGTAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 1 0.04
13 18 0.75
14 5 0.21
ACGTcount: A:0.15, C:0.17, G:0.15, T:0.53
Consensus pattern (13 bp):
TTCTGTATATCTG
Found at i:46244412 original size:19 final size:20
Alignment explanation
Indices: 46244368--46244413 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
46244358 ACTGGAACTG
*
46244368 ATACG-TAAAATTTTATAAT
1 ATACGATAAAATTTGATAAT
*
46244387 GTA-GATAAAATTTGA-AAT
1 ATACGATAAAATTTGATAAT
46244405 ATACGATAA
1 ATACGATAA
46244414 GTACTCAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.35
Consensus pattern (20 bp):
ATACGATAAAATTTGATAAT
Found at i:46249011 original size:47 final size:48
Alignment explanation
Indices: 46248960--46249086 Score: 186
Period size: 49 Copynumber: 2.6 Consensus size: 48
46248950 TTAGGATTCT
*
46248960 ATGTGATGGATGTGAACA-TG-CATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGACATATATGTGATAAGGCCTAATGGCCG
*
46249007 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG-ACATATATGTGATAAGGCCTAATGGCCG
*
46249056 ATGTGATGAATGTGAAAGTGTATATATATGT
1 ATGTGATGAATGTGAAAGTG-ACATATATGT
46249087 AATGTGAAAG
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
46 1 0.01
47 17 0.23
49 57 0.76
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.31
Consensus pattern (48 bp):
ATGTGATGAATGTGAAAGTGACATATATGTGATAAGGCCTAATGGCCG
Found at i:46249050 original size:49 final size:49
Alignment explanation
Indices: 46248981--46249086 Score: 212
Period size: 49 Copynumber: 2.2 Consensus size: 49
46248971 GTGAACATGC
46248981 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
46249030 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
46249079 ATATATGT
1 ATATATGT
46249087 AATGTGAAAG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 57 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:46249094 original size:23 final size:23
Alignment explanation
Indices: 46249064--46249109 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
46249054 CGATGTGATG
46249064 AATGTGAAAGTGTATATATATGT
1 AATGTGAAAGTGTATATATATGT
46249087 AATGTGAAAGTGTATATATATGT
1 AATGTGAAAGTGTATATATATGT
46249110 GATAAGGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (23 bp):
AATGTGAAAGTGTATATATATGT
Found at i:46249096 original size:72 final size:72
Alignment explanation
Indices: 46249015--46249158 Score: 288
Period size: 72 Copynumber: 2.0 Consensus size: 72
46249005 CGATGTGATG
46249015 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
46249080 TATATGT
66 TATATGT
46249087 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
46249152 TATATGT
66 TATATGT
46249159 GATAAGGCCT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.33
Consensus pattern (72 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATATGT
Found at i:46249120 original size:121 final size:123
Alignment explanation
Indices: 46248981--46249334 Score: 497
Period size: 121 Copynumber: 2.9 Consensus size: 123
46248971 GTGAACATGC
46248981 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
46249046 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-T-AT-G-TAATGTG-AAAGTGTAT
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGTGATAGCTAATG-GCAAAGTG--T
46249102 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
* *
46249167 CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAAGTGT
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGAT-A-G-CTAATGGCAAAGTGT
* *
46249229 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
* * * * * *
46249292 CGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATA
46249335 AGTCCCGAAG
Statistics
Matches: 213, Mismatches: 11, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
121 100 0.47
123 1 0.00
124 3 0.01
125 50 0.23
127 48 0.23
128 1 0.00
129 10 0.05
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (123 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGTGATAGCTAATGGCAAAGTGT
Found at i:46249142 original size:49 final size:49
Alignment explanation
Indices: 46249087--46249222 Score: 249
Period size: 49 Copynumber: 2.8 Consensus size: 49
46249077 ATATATATGT
46249087 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
46249136 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
46249185 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
46249223 AAGTGTATAT
Statistics
Matches: 85, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
47 25 0.29
49 60 0.71
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:46249269 original size:31 final size:31
Alignment explanation
Indices: 46249192--46249253 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
46249182 ATGAATGTGA
46249192 AAGTGTATATATGTGATAAGGCCTAATGGCC
1 AAGTGTATATATGTGATAAGGCCTAATGGCC
46249223 AAGTGTATATATGTGATAAGGCCTAATGGCC
1 AAGTGTATATATGTGATAAGGCCTAATGGCC
46249254 GATGTGATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (31 bp):
AAGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:46249276 original size:47 final size:47
Alignment explanation
Indices: 46249223--46249336 Score: 156
Period size: 47 Copynumber: 2.4 Consensus size: 47
46249213 CCTAATGGCC
* * *
46249223 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* * * *
46249270 AAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
*
46249317 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
46249337 TCCCGAAGGG
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
Found at i:46249300 original size:78 final size:78
Alignment explanation
Indices: 46249150--46249302 Score: 261
Period size: 78 Copynumber: 2.0 Consensus size: 78
46249140 TGAAAGTGTA
*
46249150 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
*
46249215 TAATGGCCAAGTG
66 GAATGGCCAAGTG
* *
46249228 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
*
46249293 GAGTGGCCAA
66 GAATGGCCAA
46249303 CGTGATGGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 70 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (78 bp):
TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
GAATGGCCAAGTG
Found at i:46255687 original size:29 final size:28
Alignment explanation
Indices: 46255594--46255687 Score: 79
Period size: 28 Copynumber: 3.4 Consensus size: 28
46255584 CAAAACCTAT
*
46255594 AAACGCATATATA-T-TATAT-AATA-A
1 AAACCCATATATATTATATATAAATACA
* * * *
46255618 AACCCACAGATATATTATATATAACTGCA
1 AAACC-CATATATATTATATATAAATACA
*
46255647 AAACCCATATATATTATCTATAAATAACA
1 AAACCCATATATATTATATATAAAT-ACA
*
46255676 AAACTCATATAT
1 AAACCCATATAT
46255688 GCATCTATTA
Statistics
Matches: 53, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
24 3 0.06
25 7 0.13
26 1 0.02
27 5 0.09
28 19 0.36
29 18 0.34
ACGTcount: A:0.50, C:0.16, G:0.03, T:0.31
Consensus pattern (28 bp):
AAACCCATATATATTATATATAAATACA
Found at i:46269444 original size:62 final size:59
Alignment explanation
Indices: 46269355--46269471 Score: 155
Period size: 59 Copynumber: 1.9 Consensus size: 59
46269345 AGCGATTATC
* *
46269355 TTAATATTAAATTAAATTAAATTTTTATCTTGTAGATAAATATTCTATTAATTTAATAAGAT
1 TTAATATTAAATTAAATTAAATATTTAT-TT-T-GATAAATATTATATTAATTTAATAAGAT
* *
46269417 TTAATATTAAATTTAATCT-CATATTTATTTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTAAAT-TAAATATTTATTTTGATAAATATTATATTAATTTAATA
46269472 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
59 23 0.46
60 1 0.02
61 2 0.04
62 23 0.46
63 1 0.02
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.50
Consensus pattern (59 bp):
TTAATATTAAATTAAATTAAATATTTATTTTGATAAATATTATATTAATTTAATAAGAT
Found at i:46271675 original size:43 final size:43
Alignment explanation
Indices: 46271627--46271742 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
46271617 CCAATCAACA
* * * *
46271627 CAAATATACTTGCACACACAGTGCATCATCT-GACGAATCGAAG
1 CAAATATACTAGCACACATAGTGCATCAT-TAGACGAACCAAAG
*
46271670 CAAATATACTAACACACATAGTGCATCATTAGACGAACCAAAG
1 CAAATATACTAGCACACATAGTGCATCATTAGACGAACCAAAG
* *
46271713 TAAATATACTGGCACACATAGTGCATCATT
1 CAAATATACTAGCACACATAGTGCATCATT
46271743 GATCTACAAC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 1 0.02
43 63 0.98
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.22
Consensus pattern (43 bp):
CAAATATACTAGCACACATAGTGCATCATTAGACGAACCAAAG
Found at i:46278970 original size:88 final size:88
Alignment explanation
Indices: 46278859--46279033 Score: 341
Period size: 88 Copynumber: 2.0 Consensus size: 88
46278849 AATTTGGTAT
*
46278859 CATATGATGGATATCTGGTCCTATTCAACCTCAGATTTGTTTTTAGAGCTTTTGTGAGCTCTTAT
1 CATATGATGGATATCTGGTCCTATTCAACCTCAGATTTGTTTTTAGAGCTTTTGTGAGCTCGTAT
46278924 AAATCCTGTAAATGGTTGGTTAC
66 AAATCCTGTAAATGGTTGGTTAC
46278947 CATATGATGGATATCTGGTCCTATTCAACCTCAGATTTGTTTTTAGAGCTTTTGTGAGCTCGTAT
1 CATATGATGGATATCTGGTCCTATTCAACCTCAGATTTGTTTTTAGAGCTTTTGTGAGCTCGTAT
46279012 AAATCCTGTAAATGGTTGGTTA
66 AAATCCTGTAAATGGTTGGTTA
46279034 TTCTAATTAA
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (88 bp):
CATATGATGGATATCTGGTCCTATTCAACCTCAGATTTGTTTTTAGAGCTTTTGTGAGCTCGTAT
AAATCCTGTAAATGGTTGGTTAC
Found at i:46287154 original size:19 final size:19
Alignment explanation
Indices: 46287113--46287154 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
46287103 TCATGTCATG
* *
46287113 ATCTGCCAGTCCAGTCGTG
1 ATCTGCCAGTCCAATCGTC
*
46287132 ATCTGCCAGTCCAATCTTC
1 ATCTGCCAGTCCAATCGTC
46287151 ATCT
1 ATCT
46287155 TACTATATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.19, C:0.33, G:0.17, T:0.31
Consensus pattern (19 bp):
ATCTGCCAGTCCAATCGTC
Found at i:46288794 original size:12 final size:13
Alignment explanation
Indices: 46288771--46288799 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
46288761 TTTTGTTTTA
46288771 TTTCCTTTTTCTT
1 TTTCCTTTTTCTT
46288784 TTTCC-TTTTCTT
1 TTTCCTTTTTCTT
46288796 TTTC
1 TTTC
46288800 ACTCTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTCCTTTTTCTT
Found at i:46289793 original size:23 final size:23
Alignment explanation
Indices: 46289753--46289802 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
46289743 ATTTCCAAAC
*
46289753 AAAAATTAAAACATCCAAAATTT
1 AAAAATTAAAACATCCAAAAATT
*
46289776 AAAAATTAAAA-GTCCCAAAAATT
1 AAAAATTAAAACAT-CCAAAAATT
46289799 AAAA
1 AAAA
46289803 TAAAATTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 1 0.04
23 23 0.96
ACGTcount: A:0.64, C:0.12, G:0.02, T:0.22
Consensus pattern (23 bp):
AAAAATTAAAACATCCAAAAATT
Found at i:46291798 original size:25 final size:25
Alignment explanation
Indices: 46291768--46291820 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
46291758 TATTATACAT
46291768 TTGTTTTAAAATCTATTATGTATTA
1 TTGTTTTAAAATCTATTATGTATTA
* *
46291793 TTGTTTTGAAATTTATTATGTATTA
1 TTGTTTTAAAATCTATTATGTATTA
46291818 TTG
1 TTG
46291821 ACTGTTGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.28, C:0.02, G:0.11, T:0.58
Consensus pattern (25 bp):
TTGTTTTAAAATCTATTATGTATTA
Found at i:46292047 original size:4 final size:4
Alignment explanation
Indices: 46292040--46292066 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
46292030 TTCATTATAT
46292040 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
46292067 ATCTATTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:46299408 original size:5 final size:5
Alignment explanation
Indices: 46299398--46299426 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
46299388 GGTAATTTGA
46299398 TAAAT TAAAT TAAAT TAAAT TAAAT TAAA
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAA
46299427 GCAAAAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
TAAAT
Found at i:46301282 original size:20 final size:20
Alignment explanation
Indices: 46301229--46301282 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
46301219 TATTTAAGCT
*
46301229 AAAGTAAGTAAATAAAATGG
1 AAAGTAAGTAAATGAAATGG
*
46301249 AAAGTAAGTAAATGCAATGG
1 AAAGTAAGTAAATGAAATGG
*
46301269 AAATTAAGTAAATG
1 AAAGTAAGTAAATG
46301283 GAAGGGTTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.56, C:0.02, G:0.20, T:0.22
Consensus pattern (20 bp):
AAAGTAAGTAAATGAAATGG
Found at i:46303773 original size:20 final size:20
Alignment explanation
Indices: 46303748--46303789 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
46303738 TAAGCTACAG
46303748 AACTCCGAATTGAGATCCGA
1 AACTCCGAATTGAGATCCGA
46303768 AACTCCGAATTGAGATCCGA
1 AACTCCGAATTGAGATCCGA
46303788 AA
1 AA
46303790 ATTTTCTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (20 bp):
AACTCCGAATTGAGATCCGA
Found at i:46309806 original size:30 final size:30
Alignment explanation
Indices: 46309749--46309810 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
46309739 TATTTTTGAA
* *
46309749 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
46309779 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
46309809 AA
1 AA
46309811 AAATAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:46312711 original size:21 final size:20
Alignment explanation
Indices: 46312687--46312728 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
46312677 TGAAATGCAA
46312687 TCAACATAACA-TGAATTAAAT
1 TCAACATAA-ATTG-ATTAAAT
*
46312708 TCAAGATAAATTGATTAAAT
1 TCAACATAAATTGATTAAAT
46312728 T
1 T
46312729 AACCATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (20 bp):
TCAACATAAATTGATTAAAT
Found at i:46313415 original size:22 final size:22
Alignment explanation
Indices: 46313373--46313417 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
46313363 TTATTAACCC
*
46313373 AAATTAAATTGTATATAAATTA
1 AAATTAAATTATATATAAATTA
*
46313395 AAATT-AATTATATTATGAATTA
1 AAATTAAATTATA-TATAAATTA
46313417 A
1 A
46313418 TACATATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
AAATTAAATTATATATAAATTA
Found at i:46316493 original size:27 final size:27
Alignment explanation
Indices: 46316463--46316958 Score: 539
Period size: 27 Copynumber: 18.4 Consensus size: 27
46316453 TCATCTCCTA
** *
46316463 GGGGTATAACAGTCATTTTAACCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
46316490 GGGGTATTTCGGTCATTTTAACCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
46316517 GGGGTATTTCAGTCATTCTACACTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* * *
46316544 GGGCTATTT-TGATCATTCTACCCTATG
1 GGGGTATTTCAG-TCATTTTACCCTATG
* * *
46316571 GGGGTATTTCGGTTAGTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* * *
46316598 AGGGTATTT-TGATCATTCTACCCTATG
1 GGGGTATTTCAG-TCATTTTACCCTATG
* * *
46316625 TGGGTATTTTAGTTATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
46316652 GGGGTATTTCAGT-ATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
46316678 GGGGTATTTCGGTCATTTTATCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* * *
46316705 GGGGTATTTCAGTCATTTTACTCAATA
1 GGGGTATTTCAGTCATTTTACCCTATG
** *
46316732 GGGGTATTTTGGTCATTTTACCCTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
* * * *
46316759 GGGGTATTTCGGTCATTCTATCCTCTG
1 GGGGTATTTCAGTCATTTTACCCTATG
* * *
46316786 GGGGTACTTCAGTCATTCTACTCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
*
46316813 GGGGTATTTCGGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* * * *
46316840 AGGATATTTCAGTCATTTTACCTTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
* * *
46316867 AGGGTATTTCGGTCATTTTACCCTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
*
46316894 GGGGTATTTCGGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
46316921 TGGGTTATTTTAGTCATTTTACCCTATG
1 -GGGGTATTTCAGTCATTTTACCCTATG
46316949 GGGGTATTTC
1 GGGGTATTTC
46316959 GGTCCAACAT
Statistics
Matches: 397, Mismatches: 66, Indels: 12
0.84 0.14 0.03
Matches are distributed among these distances:
26 27 0.07
27 344 0.87
28 26 0.07
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTATG
Found at i:46327246 original size:47 final size:47
Alignment explanation
Indices: 46327191--46327846 Score: 1132
Period size: 47 Copynumber: 13.8 Consensus size: 47
46327181 ATTTAGGATT
46327191 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
46327238 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
*
46327287 CGATGTGATGAATGTGAAAGTGTATATATATCTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
*
46327336 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
*
46327383 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
46327432 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
46327481 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
46327528 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
*
46327575 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
46327622 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
46327669 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
46327716 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
46327763 CGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
46327810 CAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
46327847 TCCCGAAGGG
Statistics
Matches: 589, Mismatches: 16, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
47 399 0.68
49 190 0.32
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
Found at i:46328021 original size:37 final size:37
Alignment explanation
Indices: 46327965--46328043 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
46327955 CCGAGCTCTA
* * * *
46327965 AAGACTCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
46328002 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46328039 AAGAC
1 AAGAC
46328044 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46334517 original size:27 final size:27
Alignment explanation
Indices: 46334486--46334544 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
46334476 GTTAAAACAG
* * *
46334486 TAAAAAAAATATAAAAAT-GACTAAAC
1 TAAAAAAAAAAGAAAAATAAACTAAAC
* *
46334512 TAAAAAGAAAAGAAAACTAAACTAAAC
1 TAAAAAAAAAAGAAAAATAAACTAAAC
46334539 TAAAAA
1 TAAAAA
46334545 CCTAAAAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.71, C:0.08, G:0.05, T:0.15
Consensus pattern (27 bp):
TAAAAAAAAAAGAAAAATAAACTAAAC
Found at i:46337071 original size:41 final size:41
Alignment explanation
Indices: 46336995--46337119 Score: 171
Period size: 41 Copynumber: 3.0 Consensus size: 41
46336985 TCAATGTAAG
* * *
46336995 TGTACTTCGATACCCCTTGAATTGCACACACGTGCCCCTGTT
1 TGTACTTCGATACCCC-TAAATTGCACATACGTGCCCCTATT
*
46337037 TGTACTTC-AGTACCCCTAAATTGCACATATGTGCCCCTATT
1 TGTACTTCGA-TACCCCTAAATTGCACATACGTGCCCCTATT
* *
46337078 TGTACTTTGATACCCCTAAATTACACATACGTGCCCCTATT
1 TGTACTTCGATACCCCTAAATTGCACATACGTGCCCCTATT
46337119 T
1 T
46337120 ACATTCCAGT
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
41 59 0.80
42 15 0.20
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.34
Consensus pattern (41 bp):
TGTACTTCGATACCCCTAAATTGCACATACGTGCCCCTATT
Found at i:46337075 original size:21 final size:21
Alignment explanation
Indices: 46337049--46337116 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
46337039 TACTTCAGTA
46337049 CCCCTAAATTGCACATATGTG
1 CCCCTAAATTGCACATATGTG
* * * *
46337070 CCCCT-ATTTGTAC-TTTGATA
1 CCCCTAAATTGCACATATG-TG
* *
46337090 CCCCTAAATTACACATACGTG
1 CCCCTAAATTGCACATATGTG
46337111 CCCCTA
1 CCCCTA
46337117 TTTACATTCC
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
19 3 0.09
20 12 0.35
21 17 0.50
22 2 0.06
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.31
Consensus pattern (21 bp):
CCCCTAAATTGCACATATGTG
Found at i:46338491 original size:40 final size:40
Alignment explanation
Indices: 46338427--46338563 Score: 145
Period size: 40 Copynumber: 3.4 Consensus size: 40
46338417 GGGGTGTTAC
* * *
46338427 ATGCTTAGTAGGCTTCGTGCCAGTGTATCTATCGGGCTAA
1 ATGCCTAGAAGGCTTTGTGCCAGTGTATCTATCGGGCTAA
* *
46338467 ATGCCTAGAAGGCTTTGTACCAGTGTATCTATCGAGCTAA
1 ATGCCTAGAAGGCTTTGTGCCAGTGTATCTATCGGGCTAA
* *
46338507 ATGCCTAGCAA-G-TTTCGTGTCAGTGTA-CTTATCGGGCTTA
1 ATGCCTAG-AAGGCTTT-GTGCCAGTGTATC-TATCGGGCTAA
* *
46338547 GTGCCTAGCAGGCTTTG
1 ATGCCTAGAAGGCTTTG
46338564 GGCAGGTGTA
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
39 5 0.06
40 71 0.88
41 5 0.06
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.32
Consensus pattern (40 bp):
ATGCCTAGAAGGCTTTGTGCCAGTGTATCTATCGGGCTAA
Found at i:46343076 original size:12 final size:12
Alignment explanation
Indices: 46343054--46343082 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
46343044 ATTAGATTTA
46343054 GTTTT-AATTAG
1 GTTTTAAATTAG
46343065 GTTTTAAATTAG
1 GTTTTAAATTAG
46343077 GTTTTA
1 GTTTTA
46343083 TTTTATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (12 bp):
GTTTTAAATTAG
Found at i:46344414 original size:14 final size:15
Alignment explanation
Indices: 46344392--46344427 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
46344382 TACAATGATG
*
46344392 AAATAAAAAAT-TGA
1 AAATTAAAAATGTGA
46344406 AAATTAAAAATGTGA
1 AAATTAAAAATGTGA
46344421 AAATTAA
1 AAATTAA
46344428 TTCTAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (15 bp):
AAATTAAAAATGTGA
Found at i:46344415 original size:15 final size:16
Alignment explanation
Indices: 46344395--46344427 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
46344385 AATGATGAAA
46344395 TAAAAAAT-TGAAAAT
1 TAAAAAATGTGAAAAT
46344410 T-AAAAATGTGAAAAT
1 TAAAAAATGTGAAAAT
46344425 TAA
1 TAA
46344428 TTCTAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.38
15 9 0.56
16 1 0.06
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (16 bp):
TAAAAAATGTGAAAAT
Found at i:46347205 original size:54 final size:53
Alignment explanation
Indices: 46347094--46347214 Score: 127
Period size: 54 Copynumber: 2.2 Consensus size: 53
46347084 GTGTTTCAAG
* ** * **
46347094 TCAGTGAGTTACATGGCCTAGCACACGGCTTGGCACATGGGCGTGTGTGGCAAC
1 TCAGTGAGTTACACGGCCTAGCACACGGCCAGGCACA-GCGAATGTGTGGCAAC
* *
46347148 TCAGAGAGTTACACGGCCTAGCACACGGCCAGGCAC-GCGAATGTGTAGGGCATC
1 TCAGTGAGTTACACGGCCTAGCACACGGCCAGGCACAGCGAATGTGT--GGCAAC
*
46347202 TCAGTGAGCTACA
1 TCAGTGAGTTACA
46347215 TGGGTGAGGA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
52 7 0.13
54 48 0.87
ACGTcount: A:0.24, C:0.26, G:0.31, T:0.19
Consensus pattern (53 bp):
TCAGTGAGTTACACGGCCTAGCACACGGCCAGGCACAGCGAATGTGTGGCAAC
Found at i:46348777 original size:85 final size:85
Alignment explanation
Indices: 46348634--46348812 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
46348624 GGTCGGCCAT
46348634 GAGCATGGGTGGACAAGATGTTAAGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTAAGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
46348699 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
46348719 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTAAGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
46348784 GTACGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
46348804 GGGCATGGG
1 GAGCATGGG
46348813 CAATAAAATA
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.37, C:0.09, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTAAGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:46351002 original size:47 final size:47
Alignment explanation
Indices: 46350949--46351454 Score: 816
Period size: 47 Copynumber: 10.6 Consensus size: 47
46350939 GTATATTTGA
* *
46350949 ATGAATGTGAAAGTGTATATATGTAATAAGG-CTGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTG
46350996 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
46351045 ATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
46351092 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
46351141 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
46351188 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
46351237 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
46351284 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
46351331 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * * *
46351378 ATTAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
46351425 ATGAATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
46351455 TCCCGAAGGG
Statistics
Matches: 431, Mismatches: 21, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
47 296 0.69
49 133 0.31
50 2 0.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:46351056 original size:96 final size:96
Alignment explanation
Indices: 46350949--46351454 Score: 851
Period size: 96 Copynumber: 5.3 Consensus size: 96
46350939 GTATATTTGA
* * *
46350949 ATGAATGTGAAAGTGTATATATGTAATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATAGCCGATGTGATGAATGTGAAAGTGTA
46351013 TATATATGTGATAAGGCCTAATGGCCGATGTG
65 TATATATGTGATAAGGCCTAATGGCCGATGTG
*
46351045 ATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
46351110 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
46351141 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
46351206 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
46351237 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--T
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
46351300 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
* *
46351331 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATTAATGTGAAAGTG--T
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * *
46351394 ATATATGTGACAGGGCCGAGTGGCCAACGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
*
46351425 ATGAATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
46351455 TCCCGAAGGG
Statistics
Matches: 395, Mismatches: 14, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
94 147 0.37
96 246 0.62
97 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:46351271 original size:143 final size:141
Alignment explanation
Indices: 46350949--46351454 Score: 816
Period size: 143 Copynumber: 3.5 Consensus size: 141
46350939 GTATATTTGA
*
46350949 ATGAATGTGAAAGTGTATATATGTAATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTG--
*
46351013 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
63 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
46351078 TAATAGCCGATGTG
128 TAATGGCCGATGTG
*
46351092 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
*
46351157 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
64 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
46351222 CTAATGGCCGATGTG
127 CTAATGGCCGATGTG
* *
46351237 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTAT
46351302 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
46351367 TGGCCGATGTG
131 TGGCCGATGTG
* * * * * *
46351378 ATTAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTAT
*
46351443 AAATGTGATAAG
66 ATATGTGATAAG
46351455 TCCCGAAGGG
Statistics
Matches: 342, Mismatches: 16, Indels: 12
0.92 0.04 0.03
Matches are distributed among these distances:
141 100 0.29
143 153 0.45
145 87 0.25
146 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (141 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TGGCCGATGTG
Found at i:46357818 original size:20 final size:20
Alignment explanation
Indices: 46357793--46357839 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
46357783 ATTTATTTGA
46357793 TCTGTAAACTCCGGTAACGC
1 TCTGTAAACTCCGGTAACGC
46357813 TCTGTAAACTCCGGTAACGC
1 TCTGTAAACTCCGGTAACGC
46357833 TCTGTAA
1 TCTGTAA
46357840 CCCTGTTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (20 bp):
TCTGTAAACTCCGGTAACGC
Found at i:46358773 original size:28 final size:28
Alignment explanation
Indices: 46358742--46358870 Score: 78
Period size: 33 Copynumber: 4.2 Consensus size: 28
46358732 CCCTTTCTAG
46358742 TATCAGTGTGGGCCTTAGCCCAATACAA
1 TATCAGTGTGGGCCTTAGCCCAATACAA
*
46358770 TATCAGAATAGTGTGGGCCTTAGCCCAATATAA
1 TATC-----AGTGTGGGCCTTAGCCCAATACAA
* * *
46358803 TAACAGAATAGTGCGGGCATTAGCCCAATATAA
1 TATCAG--T-GT--GGGCCTTAGCCCAATACAA
* * * ** *
46358836 TAACATTGTGGGCCTAAGCCCGTTACAG
1 TATCAGTGTGGGCCTTAGCCCAATACAA
46358864 TATCAGT
1 TATCAGT
46358871 ATGGTGCAAA
Statistics
Matches: 79, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
28 24 0.30
30 3 0.04
31 3 0.04
33 49 0.62
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (28 bp):
TATCAGTGTGGGCCTTAGCCCAATACAA
Found at i:46358788 original size:33 final size:33
Alignment explanation
Indices: 46358746--46358840 Score: 154
Period size: 33 Copynumber: 2.9 Consensus size: 33
46358736 TTCTAGTATC
* *
46358746 AGTGTGGGCCTTAGCCCAATACAATATCAGAAT
1 AGTGTGGGCCTTAGCCCAATATAATAACAGAAT
46358779 AGTGTGGGCCTTAGCCCAATATAATAACAGAAT
1 AGTGTGGGCCTTAGCCCAATATAATAACAGAAT
* *
46358812 AGTGCGGGCATTAGCCCAATATAATAACA
1 AGTGTGGGCCTTAGCCCAATATAATAACA
46358841 TTGTGGGCCT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (33 bp):
AGTGTGGGCCTTAGCCCAATATAATAACAGAAT
Found at i:46359062 original size:27 final size:28
Alignment explanation
Indices: 46359024--46359083 Score: 81
Period size: 27 Copynumber: 2.2 Consensus size: 28
46359014 AGCTGTCAGT
*
46359024 ACAGT-ATATGTGGCATAGCCACCA-ATA
1 ACAGTAATATGTGGCAGAGCCACCAGA-A
46359051 ACAGTAAT-TGTGGCAGAGCCACCAGAA
1 ACAGTAATATGTGGCAGAGCCACCAGAA
46359078 ACAGTA
1 ACAGTA
46359084 CTTCCTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (28 bp):
ACAGTAATATGTGGCAGAGCCACCAGAA
Found at i:46359302 original size:26 final size:26
Alignment explanation
Indices: 46359268--46359510 Score: 319
Period size: 26 Copynumber: 9.3 Consensus size: 26
46359258 TCCCTATGGT
* *
46359268 GGTATTTCGGTAATTTGCCCATCG-G
1 GGTATTTCGATAATTTACCCATCGAG
* *
46359293 GGATATTTCGATAATTTACCCATTGGG
1 GG-TATTTCGATAATTTACCCATCGAG
46359320 GGTATTTC-AGTAATTTACCCATCGAG
1 GGTATTTCGA-TAATTTACCCATCGAG
* *
46359346 GGTATTTCGATAATTTAACCATTGAG
1 GGTATTTCGATAATTTACCCATCGAG
46359372 GGTATTTCGATAATTTACCCATCGAG
1 GGTATTTCGATAATTTACCCATCGAG
* * *
46359398 GGTATTTTGGTAATTTACCCATCAAG
1 GGTATTTCGATAATTTACCCATCGAG
*
46359424 GGTATTTCTATAATTTACCCATCGAG
1 GGTATTTCGATAATTTACCCATCGAG
* * *
46359450 TGTATTTTGATAATTTTCCCATCGAG
1 GGTATTTCGATAATTTACCCATCGAG
* *
46359476 GGTATTTTGGTAATTTACCCATCGAG
1 GGTATTTCGATAATTTACCCATCGAG
46359502 GGTATTTCG
1 GGTATTTCG
46359511 GTCAACACAA
Statistics
Matches: 190, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
25 3 0.02
26 183 0.96
27 4 0.02
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (26 bp):
GGTATTTCGATAATTTACCCATCGAG
Found at i:46362470 original size:24 final size:24
Alignment explanation
Indices: 46362434--46362480 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
46362424 ATAAAAATGT
* *
46362434 CAATCTCATATACAAAATTAGATG
1 CAATCTCAGATACAAAATCAGATG
* *
46362458 CAATTTCAGATACAGAATCAGAT
1 CAATCTCAGATACAAAATCAGAT
46362481 CCTACCCCTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.28
Consensus pattern (24 bp):
CAATCTCAGATACAAAATCAGATG
Found at i:46366670 original size:25 final size:24
Alignment explanation
Indices: 46366642--46366701 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
46366632 TCTCTTAGGG
*
46366642 TTAGGGTTTTTAATAGTTTTAAGGT
1 TTAGGGTTTTTAATAG-GTTAAGGT
* **
46366667 TTAGGATTTTTTTTAGGTTAAGGT
1 TTAGGGTTTTTAATAGGTTAAGGT
46366691 TTAGGGTTTTT
1 TTAGGGTTTTT
46366702 TAAAAGGGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 17 0.57
25 13 0.43
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55
Consensus pattern (24 bp):
TTAGGGTTTTTAATAGGTTAAGGT
Found at i:46384363 original size:19 final size:19
Alignment explanation
Indices: 46384339--46384377 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
46384329 GCTATAAAAC
*
46384339 TTAGTAAGCTCGTATGAAA
1 TTAGTAAGCTCATATGAAA
46384358 TTAGTAAGCTCATATGAAA
1 TTAGTAAGCTCATATGAAA
46384377 T
1 T
46384378 AATAATCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.33
Consensus pattern (19 bp):
TTAGTAAGCTCATATGAAA
Found at i:46389307 original size:43 final size:43
Alignment explanation
Indices: 46389246--46389352 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
46389236 TCGATGTTAC
* * *
46389246 TGTCCCAGACAG-GGTCTTACACGAAATC-GATTAACGATACCAA
1 TGTCCCAGAC-GTGGTCTTACACGAAATCTCAAT-ACAATACCAA
* * *
46389289 TGTCCCAGACGTGGTCTTACATGTAATCTCAATACAATGCCAA
1 TGTCCCAGACGTGGTCTTACACGAAATCTCAATACAATACCAA
*
46389332 TGTCCCAGACATGGTCTTACA
1 TGTCCCAGACGTGGTCTTACA
46389353 TGTAATCACA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 1 0.02
43 52 0.95
44 2 0.04
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
TGTCCCAGACGTGGTCTTACACGAAATCTCAATACAATACCAA
Found at i:46392744 original size:40 final size:40
Alignment explanation
Indices: 46392689--46392913 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
46392679 TATTCGAATG
* *
46392689 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCAAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
46392729 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
46392769 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTTCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
46392812 ATACCCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
46392852 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
46392892 ATAT-CTGGCTAAATCCCAAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
46392914 TACTTGGGTT
Statistics
Matches: 156, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
39 13 0.08
40 109 0.70
43 34 0.22
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:46392842 original size:83 final size:83
Alignment explanation
Indices: 46392689--46392887 Score: 314
Period size: 83 Copynumber: 2.4 Consensus size: 83
46392679 TATTCGAATG
* * *
46392689 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTCCTATATCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTCCTATACCCGAGCTAAGTCCCGAAG
46392751 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
* *
46392769 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTTCTATACCCGAGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTCCTATACCCGAGCTAAGTCCCGAAG
46392834 GCATTTGTGCTAGTGACT
66 GCATTTGTGCTAGTGACT
* *
46392852 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
46392888 TGCTATATCT
Statistics
Matches: 108, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
80 30 0.28
81 1 0.01
83 77 0.71
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (83 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTCCTATACCCGAGCTAAGTCCCGAAG
GCATTTGTGCTAGTGACT
Found at i:46399993 original size:40 final size:40
Alignment explanation
Indices: 46399938--46400168 Score: 284
Period size: 40 Copynumber: 5.7 Consensus size: 40
46399928 TATTCGAATG
* *
46399938 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCAAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
46399978 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
46400018 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
46400061 ATACCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** *
46400101 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
46400141 ATATCC-GGCTAAATCCCGAAGGTATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
46400169 GGTTTGGAAG
Statistics
Matches: 164, Mismatches: 24, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 19 0.12
40 111 0.68
43 34 0.21
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:46400087 original size:83 final size:82
Alignment explanation
Indices: 46399938--46400168 Score: 337
Period size: 83 Copynumber: 2.9 Consensus size: 82
46399928 TATTCGAATG
* *
46399938 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGC-A-AGTTCCTATATCCGGGCTAAGTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
46400001 CATTTGTGCTAGTGACT
66 CATTTGTGCTAGTGACT
* * *
46400018 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCTGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-AGTTGCTATATCCGGGCTAAGTCCCGAAG
46400083 GCATTTGTGCTAGTGACT
65 GCATTTGTGCTAGTGACT
* * *
46400101 ATATCCGGGCTAAGACCCGAAGGCATTTGT--GTGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
*
46400163 TATTTG
66 CATTTG
46400169 GGTTTGGAAG
Statistics
Matches: 136, Mismatches: 12, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
79 19 0.14
80 42 0.31
81 3 0.02
83 72 0.53
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (82 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
CATTTGTGCTAGTGACT
Found at i:46420699 original size:47 final size:48
Alignment explanation
Indices: 46420625--46420796 Score: 164
Period size: 46 Copynumber: 3.7 Consensus size: 48
46420615 TCACTTGTGT
* *
46420625 GAGCTAGTGTAAGACATGTCTGAGACATGCATCAGCCACATT-A-TGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGAGCGA
* *
46420671 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--GCATTGAGCGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACATTGAGCGA
* * *
46420718 GTGCTAGTGTAAGACATGTCTGGGACAGGCATCAG-C-C-TCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGAG-CG-A
* *
46420765 -AGCTAGTGTAATATATGTCTGGGACATGCATC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC
46420797 GGCTACGTAA
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
45 13 0.12
46 59 0.56
47 29 0.27
48 5 0.05
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGAGCGA
Found at i:46422038 original size:20 final size:21
Alignment explanation
Indices: 46422000--46422038 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
46421990 CTGAAATGGC
*
46422000 CACACGGGCGTGTTGCCCTTG
1 CACACGGACGTGTTGCCCTTG
46422021 CACACGGACGTG-TGCCCT
1 CACACGGACGTGTTGCCCT
46422039 GTCTCAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.36, G:0.31, T:0.21
Consensus pattern (21 bp):
CACACGGACGTGTTGCCCTTG
Found at i:46450340 original size:27 final size:27
Alignment explanation
Indices: 46450310--46450372 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
46450300 TTTATTCAGT
46450310 AAACCAACTGGCAAACAGCAACTTGCC
1 AAACCAACTGGCAAACAGCAACTTGCC
* * * * *
46450337 AAACCAATTGGCGAACTGCAGCTTTCC
1 AAACCAACTGGCAAACAGCAACTTGCC
46450364 AAACCAACT
1 AAACCAACT
46450373 AGTGAACCAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.38, C:0.32, G:0.14, T:0.16
Consensus pattern (27 bp):
AAACCAACTGGCAAACAGCAACTTGCC
Found at i:46453284 original size:17 final size:17
Alignment explanation
Indices: 46453264--46453302 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
46453254 TCACCAGACA
*
46453264 ATACTGTCCACCATGTG
1 ATACTGTCCACCAGGTG
* *
46453281 ATACAGTTCACCAGGTG
1 ATACTGTCCACCAGGTG
46453298 ATACT
1 ATACT
46453303 ATCCGCTAGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (17 bp):
ATACTGTCCACCAGGTG
Found at i:46457248 original size:26 final size:26
Alignment explanation
Indices: 46457219--46457271 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
46457209 TCCAACATGC
46457219 ATTTAGGTCAATTTA-CTCCTAGAGGT
1 ATTTAGGT-AATTTATCTCCTAGAGGT
* * *
46457245 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGAGGT
46457271 A
1 A
46457272 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGAGGT
Found at i:46458181 original size:24 final size:24
Alignment explanation
Indices: 46458147--46458246 Score: 132
Period size: 24 Copynumber: 4.2 Consensus size: 24
46458137 CCAACTCCTG
* *
46458147 CTCCTTGATCAGCTCCGAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
*
46458171 CTCCTTTATCAGCTCCTAAATCCT
1 CTCCTTTATCAGCTCCTAAATCTT
*
46458195 CTCCCTTATCAGCTCCTAAA-CTCT
1 CTCCTTTATCAGCTCCTAAATCT-T
*
46458219 CTCCCTTATCAGCT-CTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
46458242 CTCCT
1 CTCCT
46458247 GACAACCTTT
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
23 11 0.16
24 57 0.84
ACGTcount: A:0.20, C:0.38, G:0.06, T:0.36
Consensus pattern (24 bp):
CTCCTTTATCAGCTCCTAAATCTT
Found at i:46464802 original size:26 final size:26
Alignment explanation
Indices: 46464773--46464825 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
46464763 TCTAACATGC
46464773 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
46464799 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
46464825 A
1 A
46464826 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:46466106 original size:24 final size:24
Alignment explanation
Indices: 46466072--46466172 Score: 125
Period size: 24 Copynumber: 4.2 Consensus size: 24
46466062 CCAACTCCTG
*
46466072 CTCCTTGATCAGCT-CTGAAATCTT
1 CTCCTTTATCAGCTCCT-AAATCTT
*
46466096 CTCCTTTATCAGCTCCTAAATCCT
1 CTCCTTTATCAGCTCCTAAATCTT
*
46466120 CTCCCTTATCAGCTCCTAAA-CTCT
1 CTCCTTTATCAGCTCCTAAATCT-T
* *
46466144 CTCCCTTATCAACTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
46466168 CTCCT
1 CTCCT
46466173 GACAGCCTTT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
23 1 0.01
24 63 0.93
25 4 0.06
ACGTcount: A:0.21, C:0.38, G:0.05, T:0.37
Consensus pattern (24 bp):
CTCCTTTATCAGCTCCTAAATCTT
Found at i:46472332 original size:27 final size:28
Alignment explanation
Indices: 46472248--46472345 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
46472238 CATGAGATTG
* * * *
46472248 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
46472277 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
46472305 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
46472332 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
46472346 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:46472356 original size:27 final size:27
Alignment explanation
Indices: 46472276--46472358 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
46472266 TAAATTGTAC
* *
46472276 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
46472304 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
46472331 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
46472358 A
1 A
46472359 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:46472359 original size:29 final size:27
Alignment explanation
Indices: 46472248--46472359 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
46472238 CATGAGATTG
** * *
46472248 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
46472277 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
46472305 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
46472332 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
46472360 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:46477137 original size:28 final size:28
Alignment explanation
Indices: 46477104--46477160 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
46477094 TTCCCTTATG
46477104 CTTCTTCTGTTAGCCGAAACCTTCTGAT
1 CTTCTTCTGTTAGCCGAAACCTTCTGAT
46477132 CTTCTTCTGTTAGCCGAAACCTTCTGAT
1 CTTCTTCTGTTAGCCGAAACCTTCTGAT
46477160 C
1 C
46477161 ACCCTACTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.18, C:0.30, G:0.14, T:0.39
Consensus pattern (28 bp):
CTTCTTCTGTTAGCCGAAACCTTCTGAT
Found at i:46482852 original size:47 final size:47
Alignment explanation
Indices: 46482782--46482940 Score: 228
Period size: 47 Copynumber: 3.4 Consensus size: 47
46482772 GGTGTACAAG
* *
46482782 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGGATGTGAAA
* * * **
46482829 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGATG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGGATGTGAAA
* *
46482876 GTGTCTATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGGATGTGAAA
*
46482923 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
46482941 TCCCGAAGGG
Statistics
Matches: 96, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 96 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGGATGTGAAA
Found at i:46489779 original size:41 final size:39
Alignment explanation
Indices: 46489745--46489898 Score: 116
Period size: 38 Copynumber: 3.9 Consensus size: 39
46489735 GAATCCAGTC
*
46489745 ACCAGCACAAAACCTGCGGGACTTTAAGCTCGAATATAAT
1 ACCAGCACAAAACCTGCGGGA-TTTAAGCTCGAATACAAT
* * * *
46489785 ACCAGCACTAAGCCTGCGGGATTTAA-C-CCAGATATAAT
1 ACCAGCACAAAACCTGCGGGATTTAAGCTCGA-ATACAAT
* * * * * *
46489823 ACCGGCACGAAGCCTGCGGGATTTAA-CCCGGATATAAT
1 ACCAGCACAAAACCTGCGGGATTTAAGCTCGAATACAAT
* * * * *
46489861 ACCAGCACATAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ACCAGCACAAAACCTGCGGG-ATTTAAGCTCGAATACA
46489899 CATCAAATAT
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
37 2 0.02
38 57 0.58
39 11 0.11
40 28 0.29
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.19
Consensus pattern (39 bp):
ACCAGCACAAAACCTGCGGGATTTAAGCTCGAATACAAT
Found at i:46489836 original size:38 final size:37
Alignment explanation
Indices: 46489745--46489880 Score: 166
Period size: 38 Copynumber: 3.5 Consensus size: 37
46489735 GAATCCAGTC
* *
46489745 ACCAGCACAAAACCTGCGGGACTTTAAGCTC-GAATATAAT
1 ACCAGCAC-AAGCCTGCGGGA-TTTAA-CCCAG-ATATAAT
46489785 ACCAGCACTAAGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCAC-AAGCCTGCGGGATTTAACCCAGATATAAT
* *
46489823 ACCGGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCAC-AAGCCTGCGGGATTTAACCCAGATATAAT
46489861 ACCAGCACATAGCCTGCGGG
1 ACCAGCACA-AGCCTGCGGG
46489881 TCTTTAAGCC
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
37 1 0.01
38 61 0.70
39 6 0.07
40 19 0.22
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.18
Consensus pattern (37 bp):
ACCAGCACAAGCCTGCGGGATTTAACCCAGATATAAT
Found at i:46499938 original size:40 final size:40
Alignment explanation
Indices: 46499840--46500101 Score: 323
Period size: 40 Copynumber: 6.6 Consensus size: 40
46499830 TCCTCGTTCA
* * * * *
46499840 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
46499879 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
46499919 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
46499959 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
46499999 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
46500039 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
46500079 AAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAACCCGG
46500102 GCAGCATTCA
Statistics
Matches: 199, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:46507895 original size:40 final size:40
Alignment explanation
Indices: 46507797--46508018 Score: 243
Period size: 40 Copynumber: 5.6 Consensus size: 40
46507787 TCCTCGTTCA
* * * * *
46507797 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
46507836 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
46507876 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
46507916 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
46507956 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
46507996 AAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAACCCGG
46508019 GCAGCATTCA
Statistics
Matches: 159, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 114 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:46513383 original size:27 final size:28
Alignment explanation
Indices: 46513299--46513396 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
46513289 CATGAGATTG
* * * *
46513299 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
46513328 GCACTAAGTGTGTGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
46513356 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
46513383 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
46513397 GACTGAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 24 0.39
28 21 0.34
29 17 0.27
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:46513410 original size:29 final size:27
Alignment explanation
Indices: 46513327--46513409 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
46513317 TAAATTGTAC
* *
46513327 AGCACTAAGTGTGTGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-CTGATTATAT
*
46513355 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTGATTATAT
* *
46513382 AGCACTGAGTGTGCG-GACTGAATATAT
1 AGCACTAAGTGTGCGAG-CTGATTATAT
46513409 A
1 A
46513410 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.02
27 33 0.66
28 16 0.32
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTGATTATAT
Found at i:46515603 original size:46 final size:46
Alignment explanation
Indices: 46515511--46515639 Score: 186
Period size: 46 Copynumber: 2.8 Consensus size: 46
46515501 TGTAACCCGC
* * * * * *
46515511 CCATAAGCGAACTCGAACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
46515557 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
46515603 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
46515640 TGCTCAACCA
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:46518058 original size:15 final size:15
Alignment explanation
Indices: 46518029--46518078 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
46518019 CAAAGATAAC
*
46518029 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
46518043 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
46518058 AA-AAGATCCAGGATA
1 AAGAA-ATCCAGAATA
46518073 AAGAAA
1 AAGAAA
46518079 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 10 0.32
15 19 0.61
16 2 0.06
ACGTcount: A:0.62, C:0.12, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:46521093 original size:46 final size:46
Alignment explanation
Indices: 46521018--46521146 Score: 186
Period size: 46 Copynumber: 2.8 Consensus size: 46
46521008 TATAACCCGC
* * * * *
46521018 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
46521064 CCATGAGTGAACTCGGACTCAACTTAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
46521110 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
46521147 TACTCAACCT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.