Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 16 of 230
Found at i:4607118 original size:25 final size:25
Alignment explanation
Indices: 4607063--4607148 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
4607053 TATGGCTCTT
* *
4607063 ATGAGCTTCCTAATATACAACT-TG
1 ATGAGCTTCCTATTATACAACTCAG
* *
4607087 ATAGAGCTTCCTGTTATACAACTCAC
1 AT-GAGCTTCCTATTATACAACTCAG
* **
4607113 ATGAGCTTCCCATTATATGACTCAG
1 ATGAGCTTCCTATTATACAACTCAG
*
4607138 AAGAGCTTCCT
1 ATGAGCTTCCT
4607149 GTTTACATGC
Statistics
Matches: 49, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
24 2 0.04
25 45 0.92
26 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCTATTATACAACTCAG
Found at i:4611674 original size:21 final size:21
Alignment explanation
Indices: 4611648--4611692 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
4611638 TCCAACAACC
4611648 TATGTATTTCTCTTATCTTTA
1 TATGTATTTCTCTTATCTTTA
4611669 TATGTATTTCTCTTATCTTTA
1 TATGTATTTCTCTTATCTTTA
4611690 TAT
1 TAT
4611693 AACAAACCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.20, C:0.13, G:0.04, T:0.62
Consensus pattern (21 bp):
TATGTATTTCTCTTATCTTTA
Found at i:4619035 original size:31 final size:31
Alignment explanation
Indices: 4618994--4619136 Score: 103
Period size: 31 Copynumber: 4.4 Consensus size: 31
4618984 GCCCGAATAT
**
4618994 AATAATTTTTTT-TTATTTTTTTAAATTTTAA
1 AATAATTTTTTTAAAATTTTTTT-AATTTTAA
*
4619025 AATACTTTTTTTAAAATTTTTTTAATTTTAA
1 AATAATTTTTTTAAAATTTTTTTAATTTTAA
4619056 AATATATTTAAAATACTTTTAAAA-TTTTTTAATTTTAA
1 AATA-A-TT----T--TTTTAAAATTTTTTTAATTTTAA
* **
4619094 AAT-ATTTTTTTTATTTTTGTTTTAATTTTTAA
1 AATAATTTTTTTAAAATTT-TTTTAA-TTTTAA
*
4619126 AATAAATTTTT
1 AATAATTTTTT
4619137 AGTATTTATT
Statistics
Matches: 91, Mismatches: 8, Indels: 24
0.74 0.07 0.20
Matches are distributed among these distances:
29 5 0.05
30 2 0.02
31 30 0.33
32 17 0.19
33 8 0.09
35 2 0.02
36 1 0.01
37 1 0.01
38 17 0.19
39 8 0.09
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (31 bp):
AATAATTTTTTTAAAATTTTTTTAATTTTAA
Found at i:4619054 original size:38 final size:35
Alignment explanation
Indices: 4619012--4619100 Score: 99
Period size: 38 Copynumber: 2.3 Consensus size: 35
4619002 TTTTTTATTT
4619012 TTTTAAAT-TTTAAAATACTTTTTTTAAAATTTTTTTAA
1 TTTTAAATATTTAAAATAC---TTTTAAAA-TTTTTTAA
4619050 TTTTAAAATATATTTAAAATACTTTTAAAATTTTTTAA
1 TTTT--AA-ATATTTAAAATACTTTTAAAATTTTTTAA
4619088 TTTTAAAATATTT
1 TTTT-AAATATTT
4619101 TTTTTATTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
36 6 0.13
37 3 0.06
38 16 0.34
39 8 0.17
40 2 0.04
41 2 0.04
42 10 0.21
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (35 bp):
TTTTAAATATTTAAAATACTTTTAAAATTTTTTAA
Found at i:4619101 original size:10 final size:10
Alignment explanation
Indices: 4619049--4619087 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
4619039 AATTTTTTTA
4619049 ATTTTAAAAT
1 ATTTTAAAAT
4619059 ATATTTAAAAT
1 AT-TTTAAAAT
4619070 ACTTTTAAAAT
1 A-TTTTAAAAT
*
4619081 TTTTTAA
1 ATTTTAA
4619088 TTTTAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 8 0.31
11 17 0.65
12 1 0.04
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (10 bp):
ATTTTAAAAT
Found at i:4623406 original size:22 final size:21
Alignment explanation
Indices: 4623364--4623407 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
4623354 GAAAAGGGAG
*
4623364 ATTTTTATTTTTTATTATTTT
1 ATTTTTATTTTTTACTATTTT
* *
4623385 ATTTTTCTTCTTTTACTGTTTT
1 ATTTTTATT-TTTTACTATTTT
4623407 A
1 A
4623408 AAGGAAAGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (21 bp):
ATTTTTATTTTTTACTATTTT
Found at i:4626560 original size:177 final size:177
Alignment explanation
Indices: 4626264--4626603 Score: 644
Period size: 177 Copynumber: 1.9 Consensus size: 177
4626254 TAGTAAACTG
*
4626264 TTTTAATCGAGAATATTCATATTGCTATATATCTACACTAGTAAACACTAGTGAACTGTTTGATA
1 TTTTAATCGAGAATAGTCATATTGCTATATATCTACACTAGTAAACACTAGTGAACTGTTTGATA
*
4626329 AGCATGGAAGTCAAACTGTTAGCAGATGATTAATTGGGATTGATCAAGTTTTAAGAGTTGATTTC
66 AGCATGGAAGTCAAACTGTTAGCAGATGATTAATTCGGATTGATCAAGTTTTAAGAGTTGATTTC
*
4626394 TACTGAGAGTATGCGCAACTAGTGTTTCGACTACCTTGTTTGTTTCA
131 TACTGAGAATATGCGCAACTAGTGTTTCGACTACCTTGTTTGTTTCA
4626441 TTTTAATCGAGAATAGTCATATTGCTATATATCTACACTAGTAAACACTAGTGAACTGTTTGATA
1 TTTTAATCGAGAATAGTCATATTGCTATATATCTACACTAGTAAACACTAGTGAACTGTTTGATA
*
4626506 AGCATGGAAGTCAAACTGTTAGCAGATGATTAATTCGGATTGATTAAGTTTTAAGAGTTGATTTC
66 AGCATGGAAGTCAAACTGTTAGCAGATGATTAATTCGGATTGATCAAGTTTTAAGAGTTGATTTC
4626571 TACTGAGAATATGCGCAACTAGTGTTTCGACTA
131 TACTGAGAATATGCGCAACTAGTGTTTCGACTA
4626604 GCTTCAAATC
Statistics
Matches: 159, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
177 159 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (177 bp):
TTTTAATCGAGAATAGTCATATTGCTATATATCTACACTAGTAAACACTAGTGAACTGTTTGATA
AGCATGGAAGTCAAACTGTTAGCAGATGATTAATTCGGATTGATCAAGTTTTAAGAGTTGATTTC
TACTGAGAATATGCGCAACTAGTGTTTCGACTACCTTGTTTGTTTCA
Found at i:4626932 original size:17 final size:17
Alignment explanation
Indices: 4626910--4626948 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
4626900 TAATTAAATT
4626910 ATATTTTTTTATTTTAA
1 ATATTTTTTTATTTTAA
*
4626927 ATATTTTTTTATTTTTA
1 ATATTTTTTTATTTTAA
4626944 ATATT
1 ATATT
4626949 CCAATGTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
ATATTTTTTTATTTTAA
Found at i:4629246 original size:49 final size:49
Alignment explanation
Indices: 4629189--4629292 Score: 181
Period size: 49 Copynumber: 2.1 Consensus size: 49
4629179 TCATGTGTTA
* * *
4629189 TAATTTTATAAAGTGTTGAGCTTTTGATTCATGATATTGAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
4629238 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
4629287 TAATTT
1 TAATTT
4629293 GTTTTTTTTC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.50
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
Found at i:4630679 original size:21 final size:21
Alignment explanation
Indices: 4630638--4630680 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
4630628 AATAAAGTAG
*
4630638 ATTATATATTATTTTTATAGT
1 ATTATATATTATATTTATAGT
4630659 ATTATATATTATGATTT-TAGT
1 ATTATATATTAT-ATTTATAGT
4630680 A
1 A
4630681 AATTCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTATATATTATATTTATAGT
Found at i:4630722 original size:17 final size:18
Alignment explanation
Indices: 4630697--4630742 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
4630687 TATAAGAATA
*
4630697 ATTATATTA-AGAATTTT
1 ATTAAATTATAGAATTTT
* *
4630714 ATTAAATTATATATTTTT
1 ATTAAATTATAGAATTTT
4630732 ATTAAATTATA
1 ATTAAATTATA
4630743 TTTAATAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATTAAATTATAGAATTTT
Found at i:4630818 original size:59 final size:59
Alignment explanation
Indices: 4630645--4630818 Score: 167
Period size: 59 Copynumber: 2.9 Consensus size: 59
4630635 TAGATTATAT
* *
4630645 ATTAT-TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATA-ATTAT
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTTAA
* * * * ** * * * *
4630702 ATTAAGAATTTTATTA-AATTATATATTTTTATTAAATTATATTTA-ATAATAATTATTTTAA
1 ATT-A-TATTTTA-TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA-TATTTTAA
*
4630763 ATTATATTTTATAGTATTATATATTACGATTTTAGTAAATTCATATAAGAATATTT
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTT
4630819 AATATTAAGA
Statistics
Matches: 86, Mismatches: 23, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
57 3 0.03
58 3 0.03
59 37 0.43
60 35 0.41
61 8 0.09
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (59 bp):
ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTTAA
Found at i:4630837 original size:102 final size:102
Alignment explanation
Indices: 4630728--4630947 Score: 413
Period size: 102 Copynumber: 2.2 Consensus size: 102
4630718 AATTATATAT
4630728 TTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTACGAT
1 TTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTACGAT
4630793 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
66 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
* *
4630830 TTTTATTACATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
1 TTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTACGAT
*
4630895 TTTAGTAAATTCATATAAGAATATTTAATATTAGGAA
66 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
4630932 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
4630948 ATTTTTATTA
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 114 1.00
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (102 bp):
TTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTACGAT
TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
Found at i:4630845 original size:59 final size:56
Alignment explanation
Indices: 4630663--4630846 Score: 167
Period size: 59 Copynumber: 3.1 Consensus size: 56
4630653 TATAGTATTA
4630663 TATATTATGATTTTAGTAAATTCATATAAGAATAATTATATTAAGAATTTTATTAAAT
1 TATATTA-GATTTTAGTAAATTCATATAAGAATAATTATATTAAGAATTTTATT-AAT
* * * * * *
4630721 TATA-TA-TTTTTATTAAATT-ATATTTAATAATAATTATTTTAAATTATATTTTATAGTATT
1 TATATTAGATTTTAGTAAATTCATA--TAAGAATAATTATATT-AA-GA-ATTTTAT--TAAT
*
4630781 ATATATTACGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTACAT
1 -TATATTA-GATTTTAGTAAATTCATATAAGAATAATT-ATATTAAGAATTTTATTA-AT
4630841 TATATT
1 TATATT
4630847 TAATAATAAT
Statistics
Matches: 99, Mismatches: 13, Indels: 27
0.71 0.09 0.19
Matches are distributed among these distances:
54 3 0.03
55 11 0.11
56 14 0.14
57 4 0.04
58 5 0.05
59 15 0.15
60 3 0.03
61 12 0.12
62 3 0.03
63 11 0.11
64 15 0.15
65 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (56 bp):
TATATTAGATTTTAGTAAATTCATATAAGAATAATTATATTAAGAATTTTATTAAT
Found at i:4630889 original size:119 final size:119
Alignment explanation
Indices: 4630645--4630864 Score: 349
Period size: 119 Copynumber: 1.9 Consensus size: 119
4630635 TAGATTATAT
*
4630645 ATTAT-TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTATATTAAGA
1 ATTATATTTTATAGTATTATATATTACGATTTTAGTAAATTCATATAAGAATAATTATATTAAGA
** *
4630709 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
66 ATTTTATTAAATTATATATTAATAATAAATTATATTTAATAATAATTATTTTAA
*
4630763 ATTATATTTTATAGTATTATATATTACGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTACGATTTTAGTAAATTCATATAAGAATAATT-ATATTAAG
*
4630828 AATTTTATTACATTATAT-TTAATAAT-AATTAT-TTTAA
65 AATTTTATTAAATTATATATTAATAATAAATTATATTTAA
4630865 ATTATATTTT
Statistics
Matches: 94, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
117 5 0.05
118 11 0.12
119 53 0.56
120 25 0.27
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (119 bp):
ATTATATTTTATAGTATTATATATTACGATTTTAGTAAATTCATATAAGAATAATTATATTAAGA
ATTTTATTAAATTATATATTAATAATAAATTATATTTAATAATAATTATTTTAA
Found at i:4631214 original size:50 final size:49
Alignment explanation
Indices: 4631123--4631220 Score: 128
Period size: 49 Copynumber: 2.0 Consensus size: 49
4631113 ATTACAACAT
*
4631123 CATTCCATTCAACCAAACACAAGAATACTATTATAGTTCTATTCCATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTATAGCTCTATTCCATTC
* *
4631172 CATTCCATTCAACCAAACA-ATTGAATTACTATTA-CGCCTCTATTCCATT
1 CATTCCATTCAACCAAACACA-AGAA-TACTATTATAG-CTCTATTCCATT
4631221 ACAGCTTTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
48 1 0.02
49 23 0.53
50 19 0.44
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.34
Consensus pattern (49 bp):
CATTCCATTCAACCAAACACAAGAATACTATTATAGCTCTATTCCATTC
Found at i:4631231 original size:16 final size:16
Alignment explanation
Indices: 4631202--4631253 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
4631192 TTGAATTACT
*
4631202 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
* *
4631218 ATTACAGCTTTATTCC
1 ATTACACCTCTATTCC
4631234 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
4631250 ATTA
1 ATTA
4631254 TAGCGAACCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.25, C:0.31, G:0.04, T:0.40
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:4632880 original size:11 final size:11
Alignment explanation
Indices: 4632864--4632893 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
4632854 GTTTAACTAG
4632864 TTCAAAACACA
1 TTCAAAACACA
4632875 TTC-AAACACA
1 TTCAAAACACA
4632885 TTCAAAACA
1 TTCAAAACA
4632894 TATCAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (11 bp):
TTCAAAACACA
Found at i:4632883 original size:10 final size:10
Alignment explanation
Indices: 4632868--4632900 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
4632858 AACTAGTTCA
4632868 AAACACATTC
1 AAACACATTC
4632878 AAACACATTC
1 AAACACATTC
4632888 AAA-ACATATC
1 AAACACAT-TC
4632898 AAA
1 AAA
4632901 ATAATCATCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.58, C:0.24, G:0.00, T:0.18
Consensus pattern (10 bp):
AAACACATTC
Found at i:4633836 original size:37 final size:40
Alignment explanation
Indices: 4633740--4633879 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
4633730 AACAAACCAG
*
4633740 TTTGGCACCCAGTGTCTCATCGGATAATTCGAAGTAATAA
1 TTTGGCACCCAGTGTCTCATCGGATAAATCGAAGTAATAA
* * *
4633780 TTTGACACCCAGTATCTCATCGGCTAAATCGAAGT-A-AA
1 TTTGGCACCCAGTGTCTCATCGGATAAATCGAAGTAATAA
* * * *
4633818 -TTGGCACCCATTGCCTCATCGAATATATCCGAAGTAATAA
1 TTTGGCACCCAGTGTCTCATCGGATAAAT-CGAAGTAATAA
* * *
4633858 TTTGACACCTAGTGTCTTATCG
1 TTTGGCACCCAGTGTCTCATCG
4633880 ACTCGAAGTC
Statistics
Matches: 80, Mismatches: 16, Indels: 7
0.78 0.16 0.07
Matches are distributed among these distances:
37 21 0.26
38 8 0.10
39 2 0.03
40 33 0.41
41 16 0.20
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (40 bp):
TTTGGCACCCAGTGTCTCATCGGATAAATCGAAGTAATAA
Found at i:4634054 original size:24 final size:23
Alignment explanation
Indices: 4634015--4634061 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
4634005 TACCAATTCA
4634015 ATCAATATAAATTCAATAAATTT
1 ATCAATATAAATTCAATAAATTT
*
4634038 ATCACATACTAAA-TCAATCAATTT
1 ATCA-ATA-TAAATTCAATAAATTT
4634062 CAATTACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (23 bp):
ATCAATATAAATTCAATAAATTT
Found at i:4637795 original size:15 final size:15
Alignment explanation
Indices: 4637775--4637834 Score: 52
Period size: 15 Copynumber: 4.0 Consensus size: 15
4637765 TTTATTTAAT
4637775 ATATATAATAATATA
1 ATATATAATAATATA
* *
4637790 ATATATTATATTATA
1 ATATATAATAATATA
* *
4637805 TTATATTATATTATATA
1 ATATA-TA-ATAATATA
4637822 ATA-A-AATAATATA
1 ATATATAATAATATA
4637835 CATAACATAA
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
13 7 0.20
14 1 0.03
15 17 0.49
16 2 0.06
17 8 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATATAATAATATA
Found at i:4637799 original size:10 final size:10
Alignment explanation
Indices: 4637767--4637819 Score: 60
Period size: 10 Copynumber: 5.7 Consensus size: 10
4637757 CTATTTACTT
4637767 TATT-TAATA
1 TATTATAATA
4637776 TA-TATAATA
1 TATTATAATA
4637785 -A-TATAATA
1 TATTATAATA
*
4637793 TATTATATTA
1 TATTATAATA
*
4637803 TATTATATTA
1 TATTATAATA
4637813 TATTATA
1 TATTATA
4637820 TAATAAAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
8 9 0.22
9 8 0.20
10 23 0.57
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
TATTATAATA
Found at i:4637820 original size:10 final size:10
Alignment explanation
Indices: 4637776--4637820 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
4637766 TTATTTAATA
* *
4637776 TATATAATAA
1 TATATTATAT
*
4637786 TATAATATAT
1 TATATTATAT
4637796 TATATTATAT
1 TATATTATAT
4637806 TATATTATAT
1 TATATTATAT
4637816 TATAT
1 TATAT
4637821 AATAAAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
TATATTATAT
Found at i:4647149 original size:9 final size:9
Alignment explanation
Indices: 4647131--4647160 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
4647121 GACATAAAAA
4647131 GATAATGAT
1 GATAATGAT
*
4647140 GATTATGAT
1 GATAATGAT
4647149 GATAATGAT
1 GATAATGAT
4647158 GAT
1 GAT
4647161 GGTGATGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.37
Consensus pattern (9 bp):
GATAATGAT
Found at i:4647166 original size:18 final size:18
Alignment explanation
Indices: 4647131--4647169 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
4647121 GACATAAAAA
*
4647131 GATAATGATGATTATGAT
1 GATAATGATGATGATGAT
*
4647149 GATAATGATGATGGTGAT
1 GATAATGATGATGATGAT
4647167 GAT
1 GAT
4647170 GATTTATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (18 bp):
GATAATGATGATGATGAT
Found at i:4648988 original size:67 final size:67
Alignment explanation
Indices: 4648913--4649104 Score: 285
Period size: 67 Copynumber: 2.9 Consensus size: 67
4648903 TCAACTTTGG
* *
4648913 CAACATGTGAAGTCCACGAAAACATTAAATATGGGGTATAATATGTAAGAACATAGCTTGGCTAT
1 CAACATGTGAAGTCCACCAAAACATTAAATATGGGGTATAATATGTAAGACCATAGCTTGGCTAT
4648978 GA
66 GA
* * *
4648980 CAACATGTGAAGTCTACCAAAACATTAAATATGGTGTATAGTATGTAAGACCATAGCTTGGCTAT
1 CAACATGTGAAGTCCACCAAAACATTAAATATGGGGTATAATATGTAAGACCATAGCTTGGCTAT
*
4649045 GG
66 GA
* * * * *
4649047 CAACATGTGAAGTCCACCAAAACATTAAACATTGGGTATATTGTGTAGGACCATAGCT
1 CAACATGTGAAGTCCACCAAAACATTAAATATGGGGTATAATATGTAAGACCATAGCT
4649105 GGGTTATGGT
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 112 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.27
Consensus pattern (67 bp):
CAACATGTGAAGTCCACCAAAACATTAAATATGGGGTATAATATGTAAGACCATAGCTTGGCTAT
GA
Found at i:4652280 original size:43 final size:43
Alignment explanation
Indices: 4652134--4652281 Score: 144
Period size: 42 Copynumber: 3.4 Consensus size: 43
4652124 TGTGTGATAT
* *
4652134 CATGTAAGACCACGTCTGGGAC-GTTGG-A-AGTGATTTAAGATTTA
1 CATGTAAGACCACGTCTGGGACAG-TGGCATCGTTATTT--GA-TTA
* * * * *
4652178 CATGTAAGACCATGTCTGGGATATTGGCATCG-TATATGATTT
1 CATGTAAGACCACGTCTGGGACAGTGGCATCGTTATTTGATTA
*
4652220 CGTGTAAGACC-CTGTCTGGGACAGTGGCATCGTTATTTGATTA
1 CATGTAAGACCAC-GTCTGGGACAGTGGCATCGTTATTTGATTA
4652263 CATGTAAGACCACGTCTGG
1 CATGTAAGACCACGTCTGG
4652282 AACGTTGGCA
Statistics
Matches: 84, Mismatches: 14, Indels: 13
0.76 0.13 0.12
Matches are distributed among these distances:
42 29 0.35
43 26 0.31
44 24 0.29
45 4 0.05
46 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACAGTGGCATCGTTATTTGATTA
Found at i:4652291 original size:43 final size:43
Alignment explanation
Indices: 4652134--4652292 Score: 157
Period size: 43 Copynumber: 3.7 Consensus size: 43
4652124 TGTGTGATAT
* *
4652134 CATGTAAGACCACGTCTGGGACGTTGG-A-AGTGATTTAAGATTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGTTATTT--GA-TTA
* ** * *
4652178 CATGTAAGACCATGTCTGGGATATTGGCATCG-TATATGATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGTTATTTGATTA
*
4652220 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGTTATTTGATTA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGTTATTTGATTA
*
4652263 CATGTAAGACCACGTCTGGAACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
4652293 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
42 29 0.31
43 34 0.37
44 25 0.27
45 4 0.04
46 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGTTATTTGATTA
Found at i:4654640 original size:31 final size:31
Alignment explanation
Indices: 4654572--4654640 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 31
4654562 AAATTTTAGA
*
4654572 ATATTAATAAGTATTAAATTATGTTATATGTG
1 ATATTAATAAGTA-TAAATTATGTTATATGAG
*
4654604 TTATTAA-AAGTA-AAATATATTGTTATATGAG
1 ATATTAATAAGTATAAAT-TA-TGTTATATGAG
4654635 ATATTA
1 ATATTA
4654641 TGCTGATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
29 4 0.12
30 2 0.06
31 20 0.62
32 6 0.19
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (31 bp):
ATATTAATAAGTATAAATTATGTTATATGAG
Found at i:4659888 original size:20 final size:20
Alignment explanation
Indices: 4659855--4659895 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
4659845 TAGCAAGAAA
*
4659855 ATTTAGTTAGTTAAGTTGAG
1 ATTTAGTTACTTAAGTTGAG
*
4659875 ATTTATTTACTTAAGTTGAG
1 ATTTAGTTACTTAAGTTGAG
4659895 A
1 A
4659896 ATTGAACTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (20 bp):
ATTTAGTTACTTAAGTTGAG
Found at i:4663733 original size:94 final size:83
Alignment explanation
Indices: 4663645--4663798 Score: 245
Period size: 84 Copynumber: 1.8 Consensus size: 83
4663635 TTTTTTTTCT
* * *
4663645 TTTTTTTGCACTTAATTGGGTACTTGAACTTTCAAAATGCATCAAAAGTCCCTCAAACCTTTTAA
1 TTTTTTTGCACTTAATTGGATACTTGAACTTTCAAAATGCATCAAAA-ACACTCAAACCTTTTAA
*
4663710 AAAAATAATTAAACTCTTC
65 AAAAACAATTAAACTCTTC
* *
4663729 TTTTTTTGCACTTAATTGGATACTTGAACTTTCAAAATGCATCAAAAACACTCAAACTTTTTCAA
1 TTTTTTTGCACTTAATTGGATACTTGAACTTTCAAAATGCATCAAAAACACTCAAACCTTTTAAA
4663794 AAAAC
66 AAAAC
4663799 CCCTATTTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
83 18 0.28
84 46 0.72
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.36
Consensus pattern (83 bp):
TTTTTTTGCACTTAATTGGATACTTGAACTTTCAAAATGCATCAAAAACACTCAAACCTTTTAAA
AAAACAATTAAACTCTTC
Found at i:4666089 original size:9 final size:9
Alignment explanation
Indices: 4666075--4666151 Score: 84
Period size: 9 Copynumber: 8.4 Consensus size: 9
4666065 TTTCGTTAAA
4666075 AATTACCCG
1 AATTACCCG
*
4666084 AATTACCCA
1 AATTACCCG
*
4666093 AATTAACCG
1 AATTACCCG
*
4666102 AATTAACCG
1 AATTACCCG
*
4666111 AATTAACCG
1 AATTACCCG
4666120 AATTA-CCG
1 AATTACCCG
*
4666128 AAAAATACCCG
1 --AATTACCCG
4666139 AATTACCCG
1 AATTACCCG
4666148 AATT
1 AATT
4666152 TTTTATTTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
8 3 0.05
9 50 0.83
10 4 0.07
11 3 0.05
ACGTcount: A:0.43, C:0.26, G:0.09, T:0.22
Consensus pattern (9 bp):
AATTACCCG
Found at i:4666268 original size:40 final size:39
Alignment explanation
Indices: 4666224--4666320 Score: 117
Period size: 39 Copynumber: 2.5 Consensus size: 39
4666214 ACTTTAGTAA
**
4666224 ATTGGGTTGGTAAATTGGATAGTCTTTTAGTTTTAGTTTT
1 ATTGGGTTGGTAAATTGGATAAAC-TTTAGTTTTAGTTTT
* *
4666264 ATTGGATTGG-ATAATTGGGTAAACTTTAGTTTTAGTTTT
1 ATTGGGTTGGTA-AATTGGATAAACTTTAGTTTTAGTTTT
4666303 ATTGGGTTGGGT-AATTGG
1 ATTGGGTT-GGTAAATTGG
4666321 GTTTGGGCTG
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
39 29 0.59
40 20 0.41
ACGTcount: A:0.22, C:0.02, G:0.28, T:0.48
Consensus pattern (39 bp):
ATTGGGTTGGTAAATTGGATAAACTTTAGTTTTAGTTTT
Found at i:4667954 original size:26 final size:26
Alignment explanation
Indices: 4667914--4667972 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
4667904 CGAGCCCAAA
* *
4667914 TTAAAAATTTTATATA-AAAATAAATT
1 TTAAAAATATAATATATAAAATAAA-T
* *
4667940 TTAAAAATATAATATATTAAATACAT
1 TTAAAAATATAATATATAAAATAAAT
4667966 TTAAAAA
1 TTAAAAA
4667973 CATTAAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (26 bp):
TTAAAAATATAATATATAAAATAAAT
Found at i:4670076 original size:42 final size:43
Alignment explanation
Indices: 4669982--4670095 Score: 176
Period size: 42 Copynumber: 2.7 Consensus size: 43
4669972 CAAACAAAAA
* * *
4669982 CGCCGCTAAAGAATATGGTCTTTAGCAGCGTTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTTCTAAG
*
4670025 CGCCTCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTTCTAAG
*
4670067 CGCCGCTAAAGAACATGTTCGTTAGCGGC
1 CGCCGCTAAAGAACATGTTCTTTAGCGGC
4670096 ACTTTTATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
42 39 0.60
43 26 0.40
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (43 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTTCTAAG
Found at i:4670486 original size:21 final size:21
Alignment explanation
Indices: 4670418--4670488 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 21
4670408 TTTTGCTCTG
*
4670418 CTCTGCTTCTCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
** *
4670439 CTCCACTTCCTTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
4670460 CGCTGCTTCCCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
4670481 CTCTGCTT
1 CTCTGCTT
4670489 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.04, C:0.46, G:0.18, T:0.31
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:4676012 original size:9 final size:9
Alignment explanation
Indices: 4675998--4676384 Score: 290
Period size: 9 Copynumber: 44.8 Consensus size: 9
4675988 TTTTTATGTA
4675998 TTATGTAAG
1 TTATGTAAG
4676007 TTATGTAAG
1 TTATGTAAG
*
4676016 TTGTGT-A-
1 TTATGTAAG
*
4676023 TTATGTGAG
1 TTATGTAAG
4676032 TTATGTAAG
1 TTATGTAAG
*
4676041 TTATGGAAG
1 TTATGTAAG
* * *
4676050 GTATTTAAT
1 TTATGTAAG
4676059 TTATGTAAG
1 TTATGTAAG
4676068 TTATGTAAG
1 TTATGTAAG
*
4676077 TTATGTAGG
1 TTATGTAAG
*
4676086 CTATGT-A-
1 TTATGTAAG
* *
4676093 TTATCTAAA
1 TTATGTAAG
*
4676102 TAATGTAAG
1 TTATGTAAG
*
4676111 TTA-GGAAGG
1 TTATGTAA-G
4676120 TTATGT-A-
1 TTATGTAAG
4676127 TTATGTAAG
1 TTATGTAAG
**
4676136 TTATGTCCG
1 TTATGTAAG
*
4676145 TTGTGT-A-
1 TTATGTAAG
*
4676152 TTATGTGAG
1 TTATGTAAG
4676161 TTATGTAAG
1 TTATGTAAG
*
4676170 TTATGGAAG
1 TTATGTAAG
* *
4676179 TTATTTAAT
1 TTATGTAAG
4676188 TTATGTAAG
1 TTATGTAAG
4676197 TTATGTAAG
1 TTATGTAAG
*
4676206 TTATGTAGG
1 TTATGTAAG
*
4676215 CTATGT-A-
1 TTATGTAAG
* *
4676222 TTATCTAAA
1 TTATGTAAG
*
4676231 TAATGTAAG
1 TTATGTAAG
*
4676240 TTA-GGAAGG
1 TTATGTAA-G
4676249 TTATGT-A-
1 TTATGTAAG
4676256 TTATGTAAG
1 TTATGTAAG
4676265 TTATGTAAG
1 TTATGTAAG
*
4676274 TTGTGT-A-
1 TTATGTAAG
*
4676281 TTATGTGAG
1 TTATGTAAG
4676290 TTATGTAAG
1 TTATGTAAG
*
4676299 TTATGGAAG
1 TTATGTAAG
* *
4676308 TTATTTAAT
1 TTATGTAAG
4676317 TTATGTAAG
1 TTATGTAAG
4676326 TTATGTAAG
1 TTATGTAAG
*
4676335 TTATGTAGG
1 TTATGTAAG
*
4676344 CTATGT-A-
1 TTATGTAAG
* *
4676351 TTATCTAAA
1 TTATGTAAG
*
4676360 TAATGTAAG
1 TTATGTAAG
*
4676369 TTA-GGAAGG
1 TTATGTAA-G
4676378 TTATGTA
1 TTATGTA
4676385 TTATCTAAAA
Statistics
Matches: 291, Mismatches: 65, Indels: 43
0.73 0.16 0.11
Matches are distributed among these distances:
7 39 0.13
8 19 0.07
9 229 0.79
10 4 0.01
ACGTcount: A:0.31, C:0.02, G:0.23, T:0.44
Consensus pattern (9 bp):
TTATGTAAG
Found at i:4676221 original size:129 final size:129
Alignment explanation
Indices: 4675991--4676388 Score: 769
Period size: 129 Copynumber: 3.1 Consensus size: 129
4675981 TGATATATTT
*
4675991 TTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGTGAGTTATGTAAGTTATGGAAGGTATTT
1 TTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGTGAGTTATGTAAGTTATGGAAGTTATTT
4676056 AATTTATGTAAGTTATGTAAGTTATGTAGGCTATGTATTATCTAAATAATGTAAGTTAGGAAGG
66 AATTTATGTAAGTTATGTAAGTTATGTAGGCTATGTATTATCTAAATAATGTAAGTTAGGAAGG
**
4676120 TTATGTATTATGTAAGTTATGTCCGTTGTGTATTATGTGAGTTATGTAAGTTATGGAAGTTATTT
1 TTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGTGAGTTATGTAAGTTATGGAAGTTATTT
4676185 AATTTATGTAAGTTATGTAAGTTATGTAGGCTATGTATTATCTAAATAATGTAAGTTAGGAAGG
66 AATTTATGTAAGTTATGTAAGTTATGTAGGCTATGTATTATCTAAATAATGTAAGTTAGGAAGG
4676249 TTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGTGAGTTATGTAAGTTATGGAAGTTATTT
1 TTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGTGAGTTATGTAAGTTATGGAAGTTATTT
4676314 AATTTATGTAAGTTATGTAAGTTATGTAGGCTATGTATTATCTAAATAATGTAAGTTAGGAAGG
66 AATTTATGTAAGTTATGTAAGTTATGTAGGCTATGTATTATCTAAATAATGTAAGTTAGGAAGG
4676378 TTATGTATTAT
1 TTATGTATTAT
4676389 CTAAAAGTAA
Statistics
Matches: 264, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 264 1.00
ACGTcount: A:0.31, C:0.02, G:0.22, T:0.44
Consensus pattern (129 bp):
TTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGTGAGTTATGTAAGTTATGGAAGTTATTT
AATTTATGTAAGTTATGTAAGTTATGTAGGCTATGTATTATCTAAATAATGTAAGTTAGGAAGG
Found at i:4676370 original size:61 final size:61
Alignment explanation
Indices: 4676256--4676371 Score: 146
Period size: 61 Copynumber: 1.9 Consensus size: 61
4676246 AGGTTATGTA
* * * * *
4676256 TTATGTAAGTTATGTAAGTTGTGTATTATGTGAGTTATGTAAGTTATGGAAGTTATTTAAT
1 TTATGTAAGTTATGTAAGTTATGTACTATGTGAGTTATCTAAATAATGGAAGTTATTTAAT
*
4676317 TTATGTAAGTTATGTAAGTTATGTAGGCTATGT-A-TTATCTAAATAATGTAAGTTA
1 TTATGTAAGTTATGTAAGTTATGTA--CTATGTGAGTTATCTAAATAATGGAAGTTA
4676372 GGAAGGTTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
61 41 0.87
62 1 0.02
63 5 0.11
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.46
Consensus pattern (61 bp):
TTATGTAAGTTATGTAAGTTATGTACTATGTGAGTTATCTAAATAATGGAAGTTATTTAAT
Found at i:4676371 original size:34 final size:34
Alignment explanation
Indices: 4676328--4676393 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
4676318 TATGTAAGTT
* *
4676328 ATGTAAGTTATGTAGGCTATGTATTATCTAAATA
1 ATGTAAGTTAGGAAGGCTATGTATTATCTAAATA
*
4676362 ATGTAAGTTAGGAAGGTTATGTATTATCTAAA
1 ATGTAAGTTAGGAAGGCTATGTATTATCTAAA
4676394 AGTAATCTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.39
Consensus pattern (34 bp):
ATGTAAGTTAGGAAGGCTATGTATTATCTAAATA
Found at i:4676451 original size:37 final size:37
Alignment explanation
Indices: 4676398--4676531 Score: 146
Period size: 37 Copynumber: 3.6 Consensus size: 37
4676388 TCTAAAAGTA
4676398 ATCTTAATATTATATAAGTTATGTAATTCGAAATTTT
1 ATCTTAATATTATATAAGTTATGTAATTCGAAATTTT
* * *
4676435 ATCTTAGTATTGTATAAGTTCA-GTAATTCGATATTTT
1 ATCTTAATATTATATAAGTT-ATGTAATTCGAAATTTT
* * * **
4676472 ATCTTAACATTATATGAGTTATGTAATAT-TATATAAGTT
1 ATCTTAATATTATATAAGTTATGTAAT-TCGA-A-ATTTT
4676511 ATCTTAATATTATATAAGTTA
1 ATCTTAATATTATATAAGTTA
4676532 AGAAATTTTA
Statistics
Matches: 79, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
36 1 0.01
37 54 0.68
38 2 0.03
39 22 0.28
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.48
Consensus pattern (37 bp):
ATCTTAATATTATATAAGTTATGTAATTCGAAATTTT
Found at i:4676520 original size:20 final size:20
Alignment explanation
Indices: 4676470--4676531 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
4676460 ATTCGATATT
* *
4676470 TTATCTTAACATTATATGAG
1 TTATCTTAATATTATATAAG
*
4676490 TTAT-GTAATATTATATAAG
1 TTATCTTAATATTATATAAG
4676509 TTATCTTAATATTATATAAG
1 TTATCTTAATATTATATAAG
4676529 TTA
1 TTA
4676532 AGAAATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
19 16 0.43
20 21 0.57
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (20 bp):
TTATCTTAATATTATATAAG
Found at i:4677014 original size:85 final size:86
Alignment explanation
Indices: 4676919--4677223 Score: 370
Period size: 85 Copynumber: 3.6 Consensus size: 86
4676909 GCGTCGATAA
*
4676919 CTTTAGCGGCGCTTTTC-CACAAACGCCACTATAGATCAAGACCTATAGCGGCGCTTTTCCTACA
1 CTTTAGCGGCGCTTTTCTCACAAACACCACTATAGATCAAGACCTATAGCGGCGCTTTTCCTACA
*
4676983 AACGACGCTATAGATCAAGAC
66 AACGACGCTATAGACCAAGAC
* * * *
4677004 CTTTAGCGGCGCTTTTC-CATAAACACCATTATAGATCAAGACCTATAGCGGCGCTTTTCCAAAA
1 CTTTAGCGGCGCTTTTCTCACAAACACCACTATAGATCAAGACCTATAGCGGCGCTTTTCCTACA
* * * *
4677068 AACGTCGCTAAAGACCATGAT
66 AACGACGCTATAGACCAAGAC
* * * * *
4677089 CTTTAGCGGCACTTTTCTAACAAGCACCACTATAGATCAAGACCTTTAGCGACGC-TTT-CTCAC
1 CTTTAGCGGCGCTTTTCTCACAAACACCACTATAGATCAAGACCTATAGCGGCGCTTTTCCT-AC
4677152 AAACGTA-GCTATAGACCAAGAC
65 AAACG-ACGCTATAGACCAAGAC
* * * * *
4677174 CTTTAGCGGCGCTTTTCTTACAAACGCCGCTATAAAT-AAGACCTTTAGCG
1 CTTTAGCGGCGCTTTTCTCACAAACACCACTATAGATCAAGACCTATAGCG
4677224 ACACTTTAAT
Statistics
Matches: 188, Mismatches: 29, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
84 14 0.07
85 143 0.76
86 31 0.16
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (86 bp):
CTTTAGCGGCGCTTTTCTCACAAACACCACTATAGATCAAGACCTATAGCGGCGCTTTTCCTACA
AACGACGCTATAGACCAAGAC
Found at i:4677053 original size:42 final size:42
Alignment explanation
Indices: 4676919--4677223 Score: 296
Period size: 42 Copynumber: 7.2 Consensus size: 42
4676909 GCGTCGATAA
*
4676919 CTTTAGCGGCGCTTTTCCACAAACGCCACTATAGATCAAGAC
1 CTTTAGCGGCGCTTTTCCACAAACACCACTATAGATCAAGAC
* *
4676961 CTATAGCGGCGCTTTTCCTACAAACGA-CGCTATAGATCAAGAC
1 CTTTAGCGGCGCTTTTCC-ACAAAC-ACCACTATAGATCAAGAC
* *
4677004 CTTTAGCGGCGCTTTTCCATAAACACCATTATAGATCAAGAC
1 CTTTAGCGGCGCTTTTCCACAAACACCACTATAGATCAAGAC
* * * * * * *
4677046 CTATAGCGGCGCTTTTCCA-AAAAACGTCGCTAAAGACCATGAT
1 CTTTAGCGGCGCTTTTCCACAAACAC--CACTATAGATCAAGAC
* * *
4677089 CTTTAGCGGCACTTTTCTAACAAGCACCACTATAGATCAAGAC
1 CTTTAGCGGCGCTTTTC-CACAAACACCACTATAGATCAAGAC
* ** *
4677132 CTTTAGCGACGC-TTTCTCACAAAC-GTAGCTATAGACCAAGAC
1 CTTTAGCGGCGCTTTTC-CACAAACACCA-CTATAGATCAAGAC
* * * *
4677174 CTTTAGCGGCGCTTTTCTTACAAACGCCGCTATAAAT-AAGAC
1 CTTTAGCGGCGCTTTTC-CACAAACACCACTATAGATCAAGAC
4677216 CTTTAGCG
1 CTTTAGCG
4677224 ACACTTTAAT
Statistics
Matches: 214, Mismatches: 39, Indels: 20
0.78 0.14 0.07
Matches are distributed among these distances:
41 7 0.03
42 101 0.47
43 101 0.47
44 1 0.00
45 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (42 bp):
CTTTAGCGGCGCTTTTCCACAAACACCACTATAGATCAAGAC
Found at i:4677199 original size:128 final size:126
Alignment explanation
Indices: 4676919--4677230 Score: 312
Period size: 128 Copynumber: 2.5 Consensus size: 126
4676909 GCGTCGATAA
* * * * *
4676919 CTTTAGCGGCGCTTTTCCACAAACGCCACTATAGATCAAGACCTATAGCGGCGCTTTTCCTACAA
1 CTTTAGCGGCGCTTTTCAACAAACGCCGCTAAAGACCAAGACCTATAGCGGCACTTTTCCTACAA
* * * *
4676984 ACGACGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCATAAACACCATTATAGATCAAGAC
66 ACGACACTATAGATCAAGACCTTTAGCGACGCTTTTCCACAAACACCA-TATAGACCAAGAC
* * * * * *
4677046 CTATAGCGGCGCTTTTCCAAAAAACGTCGCTAAAGACCATGATCTTTAGCGGCACTTTT-CTAAC
1 CTTTAGCGGCGCTTTT-CAACAAACGCCGCTAAAGACCAAGACCTATAGCGGCACTTTTCCT-AC
* *
4677110 AAGC-ACCACTATAGATCAAGACCTTTAGCGACGC-TTTCTCACAAACGTAGC-TATAGACCAAG
64 AAACGA-CACTATAGATCAAGACCTTTAGCGACGCTTTTC-CACAAAC--ACCATATAGACCAAG
4677172 AC
125 AC
* * * *
4677174 CTTTAGCGGCGCTTTTCTTACAAACGCCGCTATAA-A-TAAGACCTTTAGCGACACTTT
1 CTTTAGCGGCGCTTTTC-AACAAACGCCGCTA-AAGACCAAGACCTATAGCGGCACTTT
4677231 AATTACAAAC
Statistics
Matches: 152, Mismatches: 25, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
127 40 0.26
128 108 0.71
129 2 0.01
130 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (126 bp):
CTTTAGCGGCGCTTTTCAACAAACGCCGCTAAAGACCAAGACCTATAGCGGCACTTTTCCTACAA
ACGACACTATAGATCAAGACCTTTAGCGACGCTTTTCCACAAACACCATATAGACCAAGAC
Found at i:4677337 original size:16 final size:16
Alignment explanation
Indices: 4677316--4677349 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4677306 AAATATTAAA
*
4677316 TATTAAAATCAAACAT
1 TATTAAAATCAAAAAT
*
4677332 TATTAATATCAAAAAT
1 TATTAAAATCAAAAAT
4677348 TA
1 TA
4677350 ATTAGTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (16 bp):
TATTAAAATCAAAAAT
Found at i:4682733 original size:22 final size:21
Alignment explanation
Indices: 4682708--4682763 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
4682698 TTCATATCCT
* *
4682708 TTAAACCCTAAATCATAACCCC
1 TTAAACCCTAAACCACAA-CCC
* *
4682730 TTAAACCTTAAACCCCAACCC
1 TTAAACCCTAAACCACAACCC
4682751 TTAAACCCATAAA
1 TTAAACCC-TAAA
4682764 ACCTAAATCT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
21 10 0.36
22 18 0.64
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (21 bp):
TTAAACCCTAAACCACAACCC
Found at i:4683207 original size:18 final size:17
Alignment explanation
Indices: 4683184--4683217 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
4683174 AAATTTATTT
*
4683184 AATTAATATAAATATACC
1 AATTAAGATAAA-ATACC
4683202 AATTAAGATAAAATAC
1 AATTAAGATAAAATAC
4683218 ATTTTGCGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.59, C:0.09, G:0.03, T:0.29
Consensus pattern (17 bp):
AATTAAGATAAAATACC
Found at i:4683281 original size:41 final size:41
Alignment explanation
Indices: 4683236--4683560 Score: 296
Period size: 41 Copynumber: 7.8 Consensus size: 41
4683226 GCGCTTTTCG
* * * * *
4683236 AAAAATGCCGCAAAAGATCAAAGCATTTGCGGCGCTTTATA
1 AAAAACGCCGCAAAAGACCAGAGCATTAGCGGCGCTTCATA
* **
4683277 AAAAACGCCGCTATAGACTAGACCAGCGCATTAGCGGCGCTTCACC
1 AAAAACGCCGC-A-A-A--AGACCAGAGCATTAGCGGCGCTTCATA
* *
4683323 AAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTCATA
1 AAAAACGCCGCAAAAGACCAGAGCATTAGCGGCGCTTCATA
* * * **
4683364 AAAAATGCCGCTATAGACCAGAGCATTAGCGGCGCTTCACC
1 AAAAACGCCGCAAAAGACCAGAGCATTAGCGGCGCTTCATA
* * * **
4683405 AAAAACGCTGCTAAAGGCCAGAGCATTAGCGGCGCTTCACC
1 AAAAACGCCGCAAAAGACCAGAGCATTAGCGGCGCTTCATA
* * *
4683446 AAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTCCA-C
1 AAAAACGCCGCAAAAGACCAGAGCATTAGCGGCGCTT-CATA
* * *
4683487 AAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTTCCT-
1 AAAAACGCCGCAAAAGACCAGAGCATTAGCGGCGC-TTCATA
* * *
4683528 AAAAACGCTGCTAAAGGCTCA-AGCATTAGCGGC
1 AAAAACGCCGCAAAAGAC-CAGAGCATTAGCGGC
4683561 TCTTTTTGAG
Statistics
Matches: 248, Mismatches: 27, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
41 207 0.83
42 7 0.03
43 1 0.00
44 2 0.01
46 31 0.12
ACGTcount: A:0.33, C:0.28, G:0.22, T:0.17
Consensus pattern (41 bp):
AAAAACGCCGCAAAAGACCAGAGCATTAGCGGCGCTTCATA
Found at i:4683426 original size:82 final size:82
Alignment explanation
Indices: 4683257--4683560 Score: 398
Period size: 82 Copynumber: 3.6 Consensus size: 82
4683247 AAAAGATCAA
* * *
4683257 AGCATTTGCGGCGCTTTATAAAAAACGCCGCTATAGACTAGACCAGCGCATTAGCGGCGCTTCAC
1 AGCATTAGCGGCGCTTCATAAAAAACGCCGC--T--A-TAGACCAGAGCATTAGCGGCGCTTCAC
* *
4683322 CAAAAACGCCGCTATAGACCAG
61 CAAAAACGCCGCTAAAGGCCAG
*
4683344 AGCATTAGCGGCGCTTCATAAAAAATGCCGCTATAGACCAGAGCATTAGCGGCGCTTCACCAAAA
1 AGCATTAGCGGCGCTTCATAAAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTCACCAAAA
*
4683409 ACGCTGCTAAAGGCCAG
66 ACGCCGCTAAAGGCCAG
**
4683426 AGCATTAGCGGCGCTTCACCAAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTC-CACAAA
1 AGCATTAGCGGCGCTTCATAAAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTCAC-CAAA
4683490 AACGCCGCTAAAGGCCAG
65 AACGCCGCTAAAGGCCAG
* * * *
4683508 AGCATTAGCGGCGCTTTCCT-AAAAACGCTGCTAAAGGCTCA-AGCATTAGCGGC
1 AGCATTAGCGGCGC-TTCATAAAAAACGCCGCTATAGAC-CAGAGCATTAGCGGC
4683561 TCTTTTTGAG
Statistics
Matches: 198, Mismatches: 16, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
81 1 0.01
82 162 0.82
83 6 0.03
85 1 0.01
87 28 0.14
ACGTcount: A:0.31, C:0.29, G:0.23, T:0.17
Consensus pattern (82 bp):
AGCATTAGCGGCGCTTCATAAAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTCACCAAAA
ACGCCGCTAAAGGCCAG
Found at i:4683577 original size:123 final size:123
Alignment explanation
Indices: 4683299--4683560 Score: 422
Period size: 123 Copynumber: 2.1 Consensus size: 123
4683289 ATAGACTAGA
*
4683299 CCAGCGCATTAGCGGCGCTTCACCAAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTCATA
1 CCAGAGCATTAGCGGCGCTTCACCAAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTCATA
* *
4683364 AAAAATGCCGCTATAGACCAGAGCATTAGCGGCGCTTCACCAAAAACGCTGCTAAAGG
66 AAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTCACCAAAAACGCTGCTAAAGG
4683422 CCAGAGCATTAGCGGCGCTTCACCAAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTCCA-
1 CCAGAGCATTAGCGGCGCTTCACCAAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTT-CAT
* * *
4683486 CAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTTC-CTAAAAACGCTGCTAAAGG
65 AAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGC-TTCACCAAAAACGCTGCTAAAGG
4683545 CTCA-AGCATTAGCGGC
1 C-CAGAGCATTAGCGGC
4683561 TCTTTTTGAG
Statistics
Matches: 130, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
123 123 0.95
124 7 0.05
ACGTcount: A:0.31, C:0.30, G:0.23, T:0.16
Consensus pattern (123 bp):
CCAGAGCATTAGCGGCGCTTCACCAAAAACGCCGCTATAGACCAGAGCATTAGCGGCGCTTCATA
AAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTCACCAAAAACGCTGCTAAAGG
Found at i:4683747 original size:40 final size:40
Alignment explanation
Indices: 4683680--4683774 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 40
4683670 GGCGAATTCA
*
4683680 AAAAACGCCGCTAATACTTAATCTTTAGCGGCGTTTTTTT
1 AAAAACGCCGCTAATACTTAATCTTTAGCGGCATTTTTTT
* * * * * *
4683720 AAAAGCGCCGGTAATGCTTGATTTTTAGTGGCATTTTTTAT
1 AAAAACGCCGCTAATACTTAATCTTTAGCGGCATTTTTT-T
* *
4683761 ACAAACGCCACTAA
1 AAAAACGCCGCTAA
4683775 AGACGCCGCT
Statistics
Matches: 43, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
40 32 0.74
41 11 0.26
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (40 bp):
AAAAACGCCGCTAATACTTAATCTTTAGCGGCATTTTTTT
Found at i:4686369 original size:148 final size:145
Alignment explanation
Indices: 4686058--4686384 Score: 354
Period size: 146 Copynumber: 2.2 Consensus size: 145
4686048 GTTTATAAAT
* * * * *
4686058 AAGCGCCACTAACTATAAGTCGAAACGCAGTCGTTTCATCAACAAATAGCGCACACCTGTGGCGT
1 AAGCGCCACTAACTATAAATC-AAACGCAGTCGCTTCATCAACAAATACCGCAAACCCGTGGCGT
** ** *
4686123 TTTTGAATAAACGCCACTAATAATACAGCAAAACGGCCTCGTATCGATCAATGTTAAAACATTTT
65 TTTTGAATAAACGCCACTAATAATACAAAAAAACGGCAGCGTATCGATAAATGTTAAAACATTTT
*
4686188 GGCAGCGTTTTAACTA
130 GGCAGCATTTTAACTA
** *
4686204 AAGCGCCACTAACTATAAATCAAAACGCAGTCGCTTCATCAACACTTACCTCAAACCCGTGGC-T
1 AAGCGCCACTAACTATAAATC-AAACGCAGTCGCTTCATCAACAAATACCGCAAACCCGTGGCGT
** * * **
4686268 TTTTCGAA-AAATCGCCACTAATAACATTTAAAAAAACGGCAGCGTTTCTATAAATGTTTGAACA
65 TTTT-GAATAAA-CGCCACTAAT-A-ATACAAAAAAACGGCAGCGTATCGATAAATGTTAAAAC-
*
4686332 ATTTT-GCAGCATTTTAAGTA
125 ATTTTGGCAGCATTTTAACTA
* *
4686352 AAGCGCCACTAAATATAAGATCAAACGAAGTCG
1 AAGCGCCACTAACTATAA-ATCAAACGCAGTCG
4686385 TTTCCCTAAC
Statistics
Matches: 151, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
145 8 0.05
146 67 0.44
147 1 0.01
148 67 0.44
149 8 0.05
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (145 bp):
AAGCGCCACTAACTATAAATCAAACGCAGTCGCTTCATCAACAAATACCGCAAACCCGTGGCGTT
TTTGAATAAACGCCACTAATAATACAAAAAAACGGCAGCGTATCGATAAATGTTAAAACATTTTG
GCAGCATTTTAACTA
Found at i:4686635 original size:19 final size:19
Alignment explanation
Indices: 4686611--4686647 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
4686601 CGCCGTTCCC
*
4686611 CTTCCCAGTTACAGGATAA
1 CTTCCCACTTACAGGATAA
4686630 CTTCCCACTTACAGGATA
1 CTTCCCACTTACAGGATA
4686648 CAAATTTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (19 bp):
CTTCCCACTTACAGGATAA
Found at i:4691600 original size:18 final size:17
Alignment explanation
Indices: 4691572--4691606 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
4691562 ATTTTTAAGA
*
4691572 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
4691589 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
4691607 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:4691860 original size:16 final size:16
Alignment explanation
Indices: 4691839--4691877 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
4691829 TTGATTTGCT
*
4691839 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
4691855 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
4691871 ATTACAC
1 ATTACAC
4691878 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:4691878 original size:16 final size:16
Alignment explanation
Indices: 4691852--4691908 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
4691842 ACACAGCTTT
* *
4691852 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
4691868 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
4691884 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
4691900 TCCAATACA
1 TCCAATACA
4691909 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:4692593 original size:114 final size:114
Alignment explanation
Indices: 4692446--4692789 Score: 309
Period size: 114 Copynumber: 3.0 Consensus size: 114
4692436 GACCTTGTTG
* * * * *
4692446 GGCTTAGGTTT-TTGGCGGCGCTTCCCAAAAACGCCGTTAAAGCCCTGAGCATTAGCAGCGCTTC
1 GGCTTAGGTTTCTTTGCGGCACTTCCCAGAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTC
* * * * * *
4692510 AC-CATAAACGCTGTTAAATCCCCGAATACTCAGAGAACGGCGTCATTC
66 ACTCAAAAACGCCGCTAAATCACCGAATACTCAGAAAACGGCGTCATTA
* ** * * *
4692558 GGCTTATGTTTCTTTGCGGCACTTCCACAGAAACGCCGCTAAAGTACTGAACATTGGCGGCGCTA
1 GGCTTAGGTTTCTTTGCGGCACTTCC-CAGAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTT
* * *
4692623 C-CTCAAAAACGCCGCTAAGTCACCGAATGCTCAGAAAACGGCGTCGTTA
65 CACTCAAAAACGCCGCTAAATCACCGAATACTCAGAAAACGGCGTCATTA
* * * ** * *
4692672 GTCTTAGGTTTCTTTGCGGCGATTTCTCAGAAACGTTGCTAAATCCCTGAGCTTTAGCGGCGCTT
1 GGCTTAGGTTTCTTTGCGGC-ACTTCCCAGAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTT
* * * * * * * * *
4692737 CA-TAAAAAATGCCACCAAATCCCCGAATACGCAAAAAAACGACGTCGTTA
65 CACTCAAAAACGCCGCTAAATCACCGAATACTC-AGAAAACGGCGTCATTA
4692787 GGC
1 GGC
4692790 CGAGGTTTTT
Statistics
Matches: 182, Mismatches: 44, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
112 10 0.05
113 13 0.07
114 138 0.76
115 21 0.12
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (114 bp):
GGCTTAGGTTTCTTTGCGGCACTTCCCAGAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTC
ACTCAAAAACGCCGCTAAATCACCGAATACTCAGAAAACGGCGTCATTA
Found at i:4695276 original size:16 final size:15
Alignment explanation
Indices: 4695242--4695290 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
4695232 AAATTATTGA
4695242 AATAACATTTTAATT
1 AATAACATTTTAATT
*
4695257 AATAACATTTTTATT
1 AATAACATTTTAATT
* *
4695272 CAATAA-ATTATGATT
1 -AATAACATTTTAATT
4695287 AATA
1 AATA
4695291 GGCTTGCTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
14 4 0.13
15 21 0.70
16 5 0.17
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (15 bp):
AATAACATTTTAATT
Found at i:4697603 original size:28 final size:28
Alignment explanation
Indices: 4697572--4697628 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
4697562 TGGTTATCGA
4697572 CTTAAAAAACAAAAACTGAAGTCGCCAC
1 CTTAAAAAACAAAAACTGAAGTCGCCAC
*
4697600 CTTAAAAAACAAAAACTGAAGTTGCCAC
1 CTTAAAAAACAAAAACTGAAGTCGCCAC
4697628 C
1 C
4697629 GATCCTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.49, C:0.25, G:0.11, T:0.16
Consensus pattern (28 bp):
CTTAAAAAACAAAAACTGAAGTCGCCAC
Found at i:4698474 original size:11 final size:11
Alignment explanation
Indices: 4698460--4698484 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
4698450 TAAAAGTTTT
4698460 AAAAAATATAA
1 AAAAAATATAA
4698471 AAAAAATATAA
1 AAAAAATATAA
4698482 AAA
1 AAA
4698485 CGTATGAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAAATATAA
Found at i:4698546 original size:18 final size:18
Alignment explanation
Indices: 4698523--4698558 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
4698513 ATAAAAGCTT
4698523 AAAAATATATATATATTA
1 AAAAATATATATATATTA
*
4698541 AAAAATATGTATATATTA
1 AAAAATATATATATATTA
4698559 TATATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (18 bp):
AAAAATATATATATATTA
Found at i:4698567 original size:23 final size:24
Alignment explanation
Indices: 4698527--4698572 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
4698517 AAGCTTAAAA
4698527 ATATATATATATTAAAAAATATGT
1 ATATATATATATTAAAAAATATGT
4698551 ATATAT-TATA-TATAAAAATATG
1 ATATATATATATTA-AAAAATATG
4698573 CGTGTGTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 2 0.10
23 13 0.62
24 6 0.29
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (24 bp):
ATATATATATATTAAAAAATATGT
Found at i:4698672 original size:21 final size:21
Alignment explanation
Indices: 4698637--4698699 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
4698627 ATGAATATAG
* *
4698637 AAATAATGATAATAACCATAAT
1 AAATAATAAT-ATAACAATAAT
4698659 -AATAAATAATATAACAATAAT
1 AAAT-AATAATATAACAATAAT
* *
4698680 AAATAATGATATAACGATAA
1 AAATAATAATATAACAATAA
4698700 ATATTTTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 27 0.77
22 8 0.23
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.27
Consensus pattern (21 bp):
AAATAATAATATAACAATAAT
Found at i:4699731 original size:17 final size:18
Alignment explanation
Indices: 4699709--4699752 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
4699699 AAATTAGTTG
*
4699709 TTGGGCCTG-TTAATGGT
1 TTGGGCCCGTTTAATGGT
*
4699726 TTGGGCCCGTTTATTGGT
1 TTGGGCCCGTTTAATGGT
*
4699744 TTGTGCCCG
1 TTGGGCCCG
4699753 GGCATTATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.07, C:0.18, G:0.34, T:0.41
Consensus pattern (18 bp):
TTGGGCCCGTTTAATGGT
Found at i:4700418 original size:89 final size:88
Alignment explanation
Indices: 4700218--4700717 Score: 645
Period size: 89 Copynumber: 5.7 Consensus size: 88
4700208 ATAAGACTTG
* * * * * *
4700218 TATCTTTGATCTACTTCACGCTAATACGTGAAGACAAGACCTGCTATCTTTGATCTACTTCATGC
1 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTC--GC
* * *
4700283 CA-ATACA-TGAAGACAAGATTTGC
64 CACCTGCATTGAAGACAAGATCTGC
*
4700306 TTTCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCCT-TTTTCTTCGATCTACTTCGCC
1 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGAT-CTGTTTTCTTCGATCTACTTCGCC
4700370 ACCTGCATTAGAAGACAAGATCTGC
65 ACCTGCATT-GAAGACAAGATCTGC
* * *
4700395 TATCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGTTTTCTTTGATCTACTTAGCCA
1 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCA
* * *
4700460 CCAGTATGGGAAGACAAGATCTGC
66 CCTGCAT-TGAAGACAAGATCTGC
* * * *
4700484 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGA-CTTC-ACGTCA
1 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCA
* * *
4700547 -ATACA-TGAAGACAAGATCTAC
66 CCTGCATTGAAGACAAGATCTGC
4700568 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCA
1 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCA
* * * * *
4700633 CCAGTATGGGAAGACAATATCTAC
66 CCTGCAT-TGAAGACAAGATCTGC
4700657 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTC
1 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTC
4700718 ACGCCAATAC
Statistics
Matches: 361, Mismatches: 40, Indels: 21
0.86 0.09 0.05
Matches are distributed among these distances:
84 66 0.18
85 3 0.01
86 9 0.02
87 7 0.02
88 57 0.16
89 219 0.61
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.32
Consensus pattern (88 bp):
TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCA
CCTGCATTGAAGACAAGATCTGC
Found at i:4700687 original size:262 final size:265
Alignment explanation
Indices: 4700218--4700716 Score: 790
Period size: 262 Copynumber: 1.9 Consensus size: 265
4700208 ATAAGACTTG
* * * * *
4700218 TATCTTTGATCTACTTCACGCTAATACGTGAAGACAAGACCTGCTATCTTTGATCTACTTCATGC
1 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGACCTGCTATCTCT-ATCGACTTCACGC
* * *
4700283 CAATACATGAAGACAAGATTTGCTTTCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCC
65 CAATACATGAAGACAAGATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCC
* * *
4700348 TTTTTCTTCGATCTACTTCGCCACCTGCATTAGAAGACAAGATCTGCTATCTTTGATCTACTTCA
130 TTTTTCTTCGATCTACTTCGCCACCAGCATGAGAAGACAAGATCTACTATCTTTGATCTACTTCA
* *
4700413 TGCCAATACATGAAGACAAGATCTGTTTTCTTTGATCTACTTAGCCACCAGTATGGGAAGACAAG
195 CGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTAGCCACCAGTATGGGAAGACAAG
4700478 ATCTGC
260 ATCTGC
* *
4700484 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT-T-TCT-TCGACTTCACGTC
1 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGACCTGCTATCTCTATCGACTTCACGCC
4700546 AATACATGAAGACAAGATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGAT-CT
66 AATACATGAAGACAAGATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCCT
* * *
4700610 GTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAATATCTACTATCTTTGATCTACTTCA
131 -TTTTCTTCGATCTACTTCGCCACCAGCATGAGAAGACAAGATCTACTATCTTTGATCTACTTCA
4700675 CGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTT
195 CGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTT
4700717 CACGCCAATA
Statistics
Matches: 214, Mismatches: 18, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
261 2 0.01
262 167 0.78
264 2 0.01
265 1 0.00
266 42 0.20
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.32
Consensus pattern (265 bp):
TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGACCTGCTATCTCTATCGACTTCACGCC
AATACATGAAGACAAGATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCCT
TTTTCTTCGATCTACTTCGCCACCAGCATGAGAAGACAAGATCTACTATCTTTGATCTACTTCAC
GCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTAGCCACCAGTATGGGAAGACAAGA
TCTGC
Found at i:4700717 original size:133 final size:133
Alignment explanation
Indices: 4700247--4700755 Score: 629
Period size: 133 Copynumber: 3.9 Consensus size: 133
4700237 GCTAATACGT
* * *
4700247 GAAGACAAGACCTGCTATCTTTGATCTACTTCATGCCAATACATGAAGACAAGATTTGCTTTCTT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTT
* *
4700312 TGATCTACTTCACGCCAATACATGAAGACAAGATCCT-TTTTCTTCGATCTACTTCGCCACCTGC
66 TGATCTACTTCACGCCAATACATGAAGACAAGAT-CTGTTTTCTTCGATCTACTTCGCCACCAGT
*
4700376 ATTA
130 ATAA
* *
4700380 GAAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGTTTTCTT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTT
*** * * * * *
4700445 TGATCTACTT-A-GCCACCAGTATGGGAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCA
66 TGATCTACTTCACGCCA--A-TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCA
* * *
4700507 ATACAT
128 GTATAA
* * * * *
4700513 GAAGACAAGATCTGCT-T-TCT--TCGACTTCACGTCAATACATGAAGACAAGATCTACTATCTT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTT
4700574 TGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTA
66 TGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTA
**
4700639 TGG
131 TAA
* * *
4700642 GAAGACAATATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTT
* ** *
4700707 CGATCTACTTCACGCCAATACATGAAGGTAATATCTGTTTTCTTCGATC
66 TGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATC
4700756 GATTCCACTG
Statistics
Matches: 317, Mismatches: 48, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
128 31 0.10
129 66 0.21
130 2 0.01
131 12 0.04
132 2 0.01
133 176 0.56
134 28 0.09
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (133 bp):
GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTT
TGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTA
TAA
Found at i:4700755 original size:44 final size:44
Alignment explanation
Indices: 4700220--4700733 Score: 587
Period size: 44 Copynumber: 11.7 Consensus size: 44
4700210 AAGACTTGTA
* * * *
4700220 TCTTTGATCTACTTCACGCTAATACGTGAAGACAAGACCTGCTA
1 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* *
4700264 TCTTTGATCTACTTCATGCCAATACATGAAGACAAGATTTGCTT
1 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
*
4700308 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCCT-TTT
1 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGAT-CTGCTT
* * * *
4700352 TCTTCGATCTACTT--CGCCACCTGCATTAGAAGACAAGATCTGCTA
1 TCTTTGATCTACTTCACGCCA-ATACA-T-GAAGACAAGATCTGCTT
* *
4700397 TCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGTTT
1 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
*** *
4700441 TCTTTGATCTACTT-A-GCCACCAGTATGGGAAGACAAGATCTGCTA
1 TCTTTGATCTACTTCACGCCA--A-TACATGAAGACAAGATCTGCTT
4700486 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * *
4700530 TC--T--TCGACTTCACGTCAATACATGAAGACAAGATCTACTA
1 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
*
4700570 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTT
1 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
* * * * *** * * *
4700614 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAATATCTACTA
1 TCTTTGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTT
*
4700659 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTT
1 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
*
4700703 TCTTCGATCTACTTCACGCCAATACATGAAG
1 TCTTTGATCTACTTCACGCCAATACATGAAG
4700734 GTAATATCTG
Statistics
Matches: 392, Mismatches: 61, Indels: 34
0.80 0.13 0.07
Matches are distributed among these distances:
40 35 0.09
42 11 0.03
43 4 0.01
44 238 0.61
45 92 0.23
46 4 0.01
47 8 0.02
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (44 bp):
TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
Found at i:4700935 original size:132 final size:132
Alignment explanation
Indices: 4700775--4701018 Score: 357
Period size: 132 Copynumber: 1.8 Consensus size: 132
4700765 GCCGACTAGA
* *
4700775 GAGATAGAATTACTGGCTTCAATATACTCCACTGTAACTTCAGGGAGGTAAAA-TCTGCCAT-CT
1 GAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATTC-ACCATCCT
**
4700838 TCGATCTACTTTACTACTGCCTAGGGAGATAAGACCTGTAATCATCAATCTATTCCACTGCTGCC
65 T-GATCTACTCCACTACTGCCTAGGGAGATAAGACCTGTAATCATCAATCTATTCCACTGCTGCC
4700903 CAAG
129 CAAG
* *
4700907 GAGATAGAATTACTGGCTTCAATGTACTCCATTGTAACCTCAGGGAGGTAAAATTCACCATCCTT
1 GAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATTCACCATCCTT
* * * * *
4700972 GATCTGCTCCACTACTGCTTAGGGAGATATGATCTGTAATCTTCAAT
66 GATCTACTCCACTACTGCCTAGGGAGATAAGACCTGTAATCATCAAT
4701019 TTGTTCAACT
Statistics
Matches: 99, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
132 94 0.95
133 5 0.05
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (132 bp):
GAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATTCACCATCCTT
GATCTACTCCACTACTGCCTAGGGAGATAAGACCTGTAATCATCAATCTATTCCACTGCTGCCCA
AG
Found at i:4701151 original size:100 final size:100
Alignment explanation
Indices: 4701038--4702000 Score: 1572
Period size: 100 Copynumber: 9.6 Consensus size: 100
4701028 TGCAATGTTG
* * *
4701038 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACCGCACCG-TCAGGGAAGTAAGATCC
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCT-AAGGAAGTAAGATCC
4701102 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
65 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* * * * *
4701138 GTGAAACTAGATCCGTCGTCGTAGCTTCAATCTGTTCCACTACACTGTTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATCCG
*
4701203 CCGTTGTGGCTTCAATCTTTTTAACTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* * * * *
4701238 GGGAAACCAGATCCGCCATCGTAGCTTCAATCTGTTTCACCGCACCG-TCAGGGAAGTAAGATCC
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCT-AAGGAAGTAAGATCC
* *
4701302 GTCGTTGTGGCTTCAATCTTTTTAATTACAATATCA
65 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* *
4701338 GGGAAACCAGATCTGCCGTCGTAGTTTCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATCCG
* *
4701403 TCGTTGTGGCTTCAATCTTTTTAATTGCAGTATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
4701438 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATCCG
4701503 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* * * *
4701538 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTTCACCGCACCG-TCAGGGAAGTAAGATCC
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCT-AAGGAAGTAAGATCC
* *
4701602 GTCGTTGTGGCTTCAATCTTTTTAATTACAATATCA
65 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
*
4701638 GGGAAACCAGATCTGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATCCG
* *
4701703 TCGTTGTGGCTTCAATCTTTTTAATTGCAGTATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
*
4701738 GGGAAACCAGATCTGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATCCG
4701803 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* *
4701838 GGGAAACCAAATCCGCCGTCGTAGCTTCAATTTGTTCCACTGCACTGCTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATCCG
*
4701903 CCGTTGTGGCTTCAATCTTTTTAATTGCAGTATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
*
4701938 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCATTGCACTGCTAAGGAAGTAAGATC
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATC
4702001 TATGGTTTCG
Statistics
Matches: 803, Mismatches: 55, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
99 2 0.00
100 798 0.99
101 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.29
Consensus pattern (100 bp):
GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATCCG
CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
Found at i:4703271 original size:21 final size:21
Alignment explanation
Indices: 4703247--4703288 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
4703237 TAGCCTCTCC
4703247 ATTTTTA-CTTTTTCATTTTTT
1 ATTTTTATC-TTTTCATTTTTT
4703268 ATTTTTATCTTTTCATTTTTT
1 ATTTTTATCTTTTCATTTTTT
4703289 CACATCACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (21 bp):
ATTTTTATCTTTTCATTTTTT
Found at i:4704218 original size:7 final size:7
Alignment explanation
Indices: 4704206--4704230 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
4704196 GAATAAAGTT
4704206 AAAAATA
1 AAAAATA
4704213 AAAAATA
1 AAAAATA
4704220 AAAAATA
1 AAAAATA
4704227 AAAA
1 AAAA
4704231 CAGAGTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:4706135 original size:140 final size:140
Alignment explanation
Indices: 4705883--4706162 Score: 506
Period size: 140 Copynumber: 2.0 Consensus size: 140
4705873 AATTGCCTAA
4705883 TGTGAAAATTAAAGTTAATTTATTCAAATTTAACAGAATTCAATTAATAATATTATCAATTAAAT
1 TGTGAAAATTAAAGTTAATTTATTCAAATTTAACAGAATTCAATTAATAATATTATCAATTAAAT
4705948 TTTAATATTAAAATCAAACGAGTAAGGGACTAAACTCTTGAAATTGAATTTTAAGGGACCAATAT
66 TTTAATATTAAAATCAAACGAGTAAGGGACTAAACTCTTGAAATTGAATTTTAAGGGACCAATAT
*
4706013 TTAACTGTAT
131 TTAACAGTAT
* * *
4706023 TGTGAAAATTAAATTTCATTTATTCAAATTTAACCGAATTCAATTAATAATATTATCAATTAAAT
1 TGTGAAAATTAAAGTTAATTTATTCAAATTTAACAGAATTCAATTAATAATATTATCAATTAAAT
* *
4706088 TTTAATTTTAAAATCAAACGAGTAAGGGACTAAACTCTTGAAATTGAATTTTAAGGGATCAATAT
66 TTTAATATTAAAATCAAACGAGTAAGGGACTAAACTCTTGAAATTGAATTTTAAGGGACCAATAT
4706153 TTAACAGTAT
131 TTAACAGTAT
4706163 AAGAATACAG
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 134 1.00
ACGTcount: A:0.44, C:0.09, G:0.10, T:0.37
Consensus pattern (140 bp):
TGTGAAAATTAAAGTTAATTTATTCAAATTTAACAGAATTCAATTAATAATATTATCAATTAAAT
TTTAATATTAAAATCAAACGAGTAAGGGACTAAACTCTTGAAATTGAATTTTAAGGGACCAATAT
TTAACAGTAT
Found at i:4712452 original size:14 final size:15
Alignment explanation
Indices: 4712433--4712468 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
4712423 ACCCAAATAC
*
4712433 AGCCCAAAAC-CCGA
1 AGCCCAAAACACCCA
4712447 AGCCCAAAACACCCA
1 AGCCCAAAACACCCA
4712462 AGCCCAA
1 AGCCCAA
4712469 TTTCATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.44, C:0.44, G:0.11, T:0.00
Consensus pattern (15 bp):
AGCCCAAAACACCCA
Found at i:4713449 original size:3 final size:3
Alignment explanation
Indices: 4713441--4713504 Score: 92
Period size: 3 Copynumber: 21.0 Consensus size: 3
4713431 TTTTAGTGTC
* * *
4713441 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT ACT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4713489 ATT ATT AATT ATT ATT
1 ATT ATT -ATT ATT ATT
4713505 GGCTTTATTT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
3 53 0.95
4 3 0.05
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:4728396 original size:20 final size:21
Alignment explanation
Indices: 4728367--4728406 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
4728357 AAGTTTGAGC
*
4728367 AAGATTGAAGAA-TTGAAGAA
1 AAGATAGAAGAACTTGAAGAA
4728387 AAGATAGAAGAACTTGAAGA
1 AAGATAGAAGAACTTGAAGA
4728407 CGCATTGCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.55, C:0.03, G:0.25, T:0.17
Consensus pattern (21 bp):
AAGATAGAAGAACTTGAAGAA
Found at i:4737618 original size:100 final size:100
Alignment explanation
Indices: 4737344--4738070 Score: 835
Period size: 100 Copynumber: 7.3 Consensus size: 100
4737334 AAACCATAGT
* * * *
4737344 TTGCAATTTAAAAGATTGAGGCCACAA-AGACGAATCTTACTTTCTCAAGTGGTGCAGTGGAACA
1 TTGCAATTTAAAAGATTGAGGCCACAACAG-CGGATCTTACTTTC-CAAGCGATGCAGCGGAACA
* * *
4737408 GATTGAAGCTACAATGGCGGATTTCACTTCCCTGACA
64 GATTGAAGCTACAACGGCGAATCTCACTTCCCTGACA
* * * ** * * *
4737445 TTGTAA-TCAAAAGATTGAGGCCACAACGGCAAATCTTA-TTTTCAGGCGGTGCAGCGGAACAGA
1 TTGCAATTTAAAAGATTGAGGCCACAACAGCGGATCTTACTTTCCAAGCGATGCAGCGGAACAGA
* * * * *
4737508 TTGAAACTACAACAGTGGATCTTACTTCCCTGACA
66 TTGAAGCTACAACGGCGAATCTCACTTCCCTGACA
* * * * * **
4737543 TTGCAA-TTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAGTAG
1 TTGCAATTTAA-AAGATTGAGGCCACAACAGCGGATCTTACTTTCCAAGCGATGCAGCGGAACAG
* *
4737607 ATTGAAACTACAACGGCGAATCTCACTTCCCCGACA
65 ATTGAAGCTACAACGGCGAATCTCACTTCCCTGACA
* * * **
4737643 TTGCAATTTAAAAAATTGAGGCCACGACAGCGGATCTTACTTACTTAGCGATGCAGCGGAACAGA
1 TTGCAATTTAAAAGATTGAGGCCACAACAGCGGATCTTACTTTCCAAGCGATGCAGCGGAACAGA
*
4737708 TTGAAGCTACAACGGTGAATCTCACTTCTCC-GACA
66 TTGAAGCTACAACGGCGAATCTCACTTC-CCTGACA
* * * ** *
4737743 TTGCAATTTAAAAGATTGAGGCCACGACGGCGGATCTTACTTACTTAGCGATGCAGCGAAACAGA
1 TTGCAATTTAAAAGATTGAGGCCACAACAGCGGATCTTACTTTCCAAGCGATGCAGCGGAACAGA
*
4737808 TTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTCACTTCCCTGACA
* * *
4737843 TTGCAATTTAAAAGATTGAGGCCACGACGGCGGATCTTAC-TTCCAAGCGAT-CTAGAGGAACAG
1 TTGCAATTTAAAAGATTGAGGCCACAACAGCGGATCTTACTTTCCAAGCGATGC-AGCGGAACAG
* * * *
4737906 ATTGAAGCTACAATGACGGATCTCAC-TCCCTCAACA
65 ATTGAAGCTACAACGGCGAATCTCACTTCCCT-GACA
* * * *
4737942 TTGCAATTTAAAAGATTGAGGCCACGACGGCAGATCTTAC-TTCCAAGCAATGCAGCGGAACAGA
1 TTGCAATTTAAAAGATTGAGGCCACAACAGCGGATCTTACTTTCCAAGCGATGCAGCGGAACAGA
* *
4738006 TTGAAGCTACAATGGCGAATCTCACTTTCCTGACA
66 TTGAAGCTACAACGGCGAATCTCACTTCCCTGACA
4738041 TTGCAA-TTAAAAGATTGAGGCCACAACAGC
1 TTGCAATTTAAAAGATTGAGGCCACAACAGC
4738071 AAATCTTATT
Statistics
Matches: 548, Mismatches: 68, Indels: 23
0.86 0.11 0.04
Matches are distributed among these distances:
98 82 0.15
99 161 0.29
100 293 0.53
101 12 0.02
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (100 bp):
TTGCAATTTAAAAGATTGAGGCCACAACAGCGGATCTTACTTTCCAAGCGATGCAGCGGAACAGA
TTGAAGCTACAACGGCGAATCTCACTTCCCTGACA
Found at i:4737859 original size:50 final size:50
Alignment explanation
Indices: 4737505--4738078 Score: 233
Period size: 50 Copynumber: 11.5 Consensus size: 50
4737495 GCAGCGGAAC
* * * * *
4737505 AGATTGAAACTACAACAGTGGATCTTACTTCCCTGACATTGCAA-TTAAGA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAA-A
* * * * * * ** **
4737555 AGATTGAAGCTACAACAGCGGATCTTACTT-TCCTAGCGTTGCAGTGGAGT
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGA-CATTGCAATTTAAA
* *
4737605 AGATTGAAACTACAACGGCGAATCTCACTTCCCCGACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * * * * * ** **** *
4737655 AAATTGAGGCCACGACAGCGGATCTTACTT-ACTTAGCGA-TGCAGCGGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGA-C-ATTGCAATTTAAA
* * *
4737705 AGATTGAAGCTACAACGGTGAATCTCACTTCTCCGACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * * * ** ***
4737755 AGATTGAGGCCACGACGGCGGATCTTACTT-ACTTAGCGA-TGC-AGCGAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGA-C-ATTGCAATTTAAA
*
4737804 CAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTTAAA
1 -AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * * ** ** *
4737855 AGATTGAGGCCACGACGGCGGATCTTACTTCCAAG-CGA-T-CTAGA-GGAAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC-ATTGC-A-ATTTAAA
* * * * *
4737904 AGATTGAAGCTACAATGACGGATCTCAC-TCCCTCAACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCC-CGACATTGCAATTTAAA
* * * ** * **** *
4737954 AGATTGAGGCCACGACGGC-AGATCTTACTTCCAAG-CAATGCAGCGGAAC
1 AGATTGAAGCTACAACGGCGA-ATCTTACTTCCCCGACATTGCAATTTAAA
* * * *
4738003 AGATTGAAGCTACAATGGCGAATCTCACTTTCCTGACATTGCAA-TTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * *
4738052 AGATTGAGGCCACAACAGCAAATCTTA
1 AGATTGAAGCTACAACGGCGAATCTTA
4738079 TTCTGTTTAT
Statistics
Matches: 364, Mismatches: 135, Indels: 51
0.66 0.25 0.09
Matches are distributed among these distances:
48 4 0.01
49 97 0.27
50 245 0.67
51 18 0.05
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
Found at i:4742398 original size:51 final size:53
Alignment explanation
Indices: 4742310--4742412 Score: 140
Period size: 51 Copynumber: 2.0 Consensus size: 53
4742300 AAAATTAACA
* *
4742310 AAAAAAATTATTTAAAATTTTATAAAAATGTATAAAAAATCTTAAAAACTTAT
1 AAAAAAATTATTTAAAATTTTACAAAAATGTATAAAAAATATTAAAAACTTAT
* *
4742363 AAAAAAA-TATTT-AAA-TTTACATAAATTTATAAAAAAATATTAAAAACTTA
1 AAAAAAATTATTTAAAATTTTACAAAAATGTAT-AAAAAATATTAAAAACTTA
4742413 AACTGAACCG
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
50 12 0.27
51 21 0.47
52 5 0.11
53 7 0.16
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (53 bp):
AAAAAAATTATTTAAAATTTTACAAAAATGTATAAAAAATATTAAAAACTTAT
Found at i:4742963 original size:19 final size:19
Alignment explanation
Indices: 4742930--4743115 Score: 83
Period size: 20 Copynumber: 9.3 Consensus size: 19
4742920 TTGTTCATGT
* *
4742930 TTTTTATGATTTTTTATAA
1 TTTTTATAAATTTTTATAA
*
4742949 TTTTATATCAATTTTTATAA
1 TTTT-TATAAATTTTTATAA
**
4742969 TTTTTATAAATTTCAATAA
1 TTTTTATAAATTTTTATAA
* *
4742988 TTTTTATGATTTTTTAT-A
1 TTTTTATAAATTTTTATAA
* *
4743006 TGTTTTCATAAAATTTCA-AA
1 T-TTTT-ATAAATTTTTATAA
* * *
4743026 TATATTCTAATAATTTTATAA
1 T-TTTTATAA-ATTTTTATAA
*
4743047 TTGTTT-TAAATTGTATTAAAA
1 TT-TTTATAAATT-T-TTATAA
* *
4743068 TTTATTTTTATAATATTTATAA
1 -TT-TTTATA-AATTTTTATAA
*
4743090 GTTTTTATTAATTTTTA-ATA
1 -TTTTTATAAATTTTTATA-A
4743110 TTTTTA
1 TTTTTA
4743116 ATTTTTAATA
Statistics
Matches: 127, Mismatches: 27, Indels: 26
0.71 0.15 0.14
Matches are distributed among these distances:
18 2 0.02
19 45 0.35
20 48 0.38
21 14 0.11
22 12 0.09
23 3 0.02
24 3 0.02
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (19 bp):
TTTTTATAAATTTTTATAA
Found at i:4743004 original size:10 final size:9
Alignment explanation
Indices: 4742930--4743001 Score: 72
Period size: 9 Copynumber: 7.6 Consensus size: 9
4742920 TTGTTCATGT
*
4742930 TTTTTATGAT
1 TTTTTAT-AA
4742940 TTTTTATAA
1 TTTTTATAA
4742949 TTTTATATCAA
1 TTTT-TAT-AA
4742960 TTTTTATAA
1 TTTTTATAA
4742969 TTTTTATAAA
1 TTTTTAT-AA
**
4742979 TTTCAATAA
1 TTTTTATAA
*
4742988 TTTTTATGA
1 TTTTTATAA
4742997 TTTTT
1 TTTTT
4743002 TATATGTTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
9 27 0.51
10 20 0.38
11 6 0.11
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:4743016 original size:29 final size:28
Alignment explanation
Indices: 4742930--4743016 Score: 88
Period size: 29 Copynumber: 3.0 Consensus size: 28
4742920 TTGTTCATGT
4742930 TTTTTATGATTTTTTATAATTTTAT-ATCAA
1 TTTTTATGATTTTTTAT-ATTTT-TCAT-AA
* **
4742960 TTTTTAT-AATTTTTATAAATTTCAATAA
1 TTTTTATGATTTTTTATATTTTTC-ATAA
4742988 TTTTTATGATTTTTTATATGTTTTCATAA
1 TTTTTATGATTTTTTATAT-TTTTCATAA
4743017 AATTTCAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
27 1 0.02
28 12 0.26
29 23 0.49
30 11 0.23
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (28 bp):
TTTTTATGATTTTTTATATTTTTCATAA
Found at i:4743149 original size:9 final size:9
Alignment explanation
Indices: 4743071--4743186 Score: 53
Period size: 9 Copynumber: 12.6 Consensus size: 9
4743061 ATTAAAATTT
4743071 ATTTTTATA
1 ATTTTTATA
*
4743080 ATATTTATA
1 ATTTTTATA
4743089 AGTTTTTATTA
1 A-TTTTTA-TA
4743100 A-TTTT-TA
1 ATTTTTATA
4743107 ATATTTT-TA
1 AT-TTTTATA
4743116 ATTTTTAATA
1 ATTTTT-ATA
* **
4743126 GTTTCAATA
1 ATTTTTATA
*
4743135 TGTTTTTATA
1 -ATTTTTATA
*
4743145 ATTTTTTATG
1 A-TTTTTATA
*
4743155 GTTTTTAT-
1 ATTTTTATA
*
4743163 -TTTTTATG
1 ATTTTTATA
4743171 ATCTTTTAATA
1 AT-TTTT-ATA
4743182 ATTTT
1 ATTTT
4743187 CTATTAGAAA
Statistics
Matches: 84, Mismatches: 11, Indels: 23
0.71 0.09 0.19
Matches are distributed among these distances:
7 10 0.12
8 4 0.05
9 32 0.38
10 31 0.37
11 7 0.08
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (9 bp):
ATTTTTATA
Found at i:4745856 original size:46 final size:46
Alignment explanation
Indices: 4745787--4745875 Score: 110
Period size: 46 Copynumber: 1.9 Consensus size: 46
4745777 GTTTTTGCCA
* * *
4745787 AGGTTCCGAGTTCCTAGATATGTTGC-ATACTTGAGAATGCATGTTT
1 AGGTTCCGAGCTCCTAGATATGTTGCGA-ACTCGAGAATACATGTTT
*
4745833 AGGTTCTGAGCTCCT-GCATATGTTGCGAACTCGAGAATACATG
1 AGGTTCCGAGCTCCTAG-ATATGTTGCGAACTCGAGAATACATG
4745876 AATATTAAGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.03
46 35 0.95
47 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (46 bp):
AGGTTCCGAGCTCCTAGATATGTTGCGAACTCGAGAATACATGTTT
Found at i:4747751 original size:39 final size:40
Alignment explanation
Indices: 4747683--4747805 Score: 151
Period size: 39 Copynumber: 3.1 Consensus size: 40
4747673 ATTGGTGGCT
* *
4747683 TTTATGGGAAAAACGCCGCTATTGCTTTACCTTCTGCGGCA
1 TTTATGAG-AAAACGCCGCTATTGCTTTACCTTTTGCGGCA
* * *
4747724 TTTATGAGAAAACACCG-TATTGCTTTACCTTTTGTGGCG
1 TTTATGAGAAAACGCCGCTATTGCTTTACCTTTTGCGGCA
* *
4747763 TTTATGCA-AAAACGCCGCTAATACTTTACCTTTTGCGGCA
1 TTTATG-AGAAAACGCCGCTATTGCTTTACCTTTTGCGGCA
4747803 TTT
1 TTT
4747806 TTTGGTTAGC
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
39 33 0.47
40 30 0.43
41 7 0.10
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.36
Consensus pattern (40 bp):
TTTATGAGAAAACGCCGCTATTGCTTTACCTTTTGCGGCA
Found at i:4754086 original size:59 final size:57
Alignment explanation
Indices: 4753976--4754087 Score: 134
Period size: 59 Copynumber: 1.9 Consensus size: 57
4753966 TTGGGATTTG
* * * * **
4753976 TTTTTTTTAAGTTAGATATTGAACTTGACAGTTATTCCCACATTGGGGTTTGAACTT
1 TTTTTTTTAAGTTAGACATTAAACTTCACAATTATTCCCACATTGAAGTTTGAACTT
* *
4754033 TTTTTTGTCTAAGTTAGACCTTAAACTTCACAATTATTCTCACATTGAAGTTTGA
1 TTTTTT-T-TAAGTTAGACATTAAACTTCACAATTATTCCCACATTGAAGTTTGA
4754088 GTCCTTAAAC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
57 6 0.13
58 1 0.02
59 38 0.84
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (57 bp):
TTTTTTTTAAGTTAGACATTAAACTTCACAATTATTCCCACATTGAAGTTTGAACTT
Found at i:4754095 original size:39 final size:39
Alignment explanation
Indices: 4754051--4754128 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
4754041 CTAAGTTAGA
4754051 CCTTAAACTTCACAATTATTCTCACATTGAAGTTTGAGT
1 CCTTAAACTTCACAATTATTCTCACATTGAAGTTTGAGT
4754090 CCTTAAACTTCACAATTATTCTCACATTGAAGTTTGAGT
1 CCTTAAACTTCACAATTATTCTCACATTGAAGTTTGAGT
4754129 TTTTTTTATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (39 bp):
CCTTAAACTTCACAATTATTCTCACATTGAAGTTTGAGT
Found at i:4757548 original size:22 final size:24
Alignment explanation
Indices: 4757497--4757549 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 24
4757487 TTTTTATGAC
4757497 TAAATTATTGTTATTAAATATGCTT
1 TAAATTATTGTTATT-AATATGCTT
*
4757522 GAAATTATTG-TATT-ATAT-CTTT
1 TAAATTATTGTTATTAATATGC-TT
4757544 TAAATT
1 TAAATT
4757550 GAATTTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
21 1 0.04
22 11 0.44
24 4 0.16
25 9 0.36
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.53
Consensus pattern (24 bp):
TAAATTATTGTTATTAATATGCTT
Found at i:4759055 original size:51 final size:51
Alignment explanation
Indices: 4758979--4759084 Score: 212
Period size: 51 Copynumber: 2.1 Consensus size: 51
4758969 GAGTACAAGT
4758979 GTATACAATCTTAAATATTCTTTGTTGTTGTTGTAGGAACTTTAGAAGCTG
1 GTATACAATCTTAAATATTCTTTGTTGTTGTTGTAGGAACTTTAGAAGCTG
4759030 GTATACAATCTTAAATATTCTTTGTTGTTGTTGTAGGAACTTTAGAAGCTG
1 GTATACAATCTTAAATATTCTTTGTTGTTGTTGTAGGAACTTTAGAAGCTG
4759081 GTAT
1 GTAT
4759085 TTATACTCCC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.43
Consensus pattern (51 bp):
GTATACAATCTTAAATATTCTTTGTTGTTGTTGTAGGAACTTTAGAAGCTG
Found at i:4761779 original size:3 final size:3
Alignment explanation
Indices: 4761771--4761797 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
4761761 TCAACACTGT
4761771 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
4761798 ACCTTCTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:4768119 original size:28 final size:28
Alignment explanation
Indices: 4768066--4768119 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
4768056 TTTAAAATAT
* **
4768066 TTTTAAAATACTTTTTTAATTTTTTTAA
1 TTTTAAAATACTTTTTAAATACTTTTAA
4768094 TTTTAAAATA-TTTTTAAAATACTTTT
1 TTTTAAAATACTTTTT-AAATACTTTT
4768120 TTTAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (28 bp):
TTTTAAAATACTTTTTAAATACTTTTAA
Found at i:4768170 original size:39 final size:40
Alignment explanation
Indices: 4768038--4768174 Score: 233
Period size: 40 Copynumber: 3.5 Consensus size: 40
4768028 TAAATATATA
4768038 TTTTTTTAATTTTTT-AATTTTAAAATATTTTTAAAATAC
1 TTTTTTTAATTTTTTAAATTTTAAAATATTTTTAAAATAC
*
4768077 -TTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATAC
1 TTTTTTTAATTTTTTAAATTTTAAAATATTTTTAAAATAC
*
4768116 TTTTTTTAATTTTTTAAATTTTAAAATATTTTAAAAATAC
1 TTTTTTTAATTTTTTAAATTTTAAAATATTTTTAAAATAC
*
4768156 TTTTTTTAATTTTTAAAAT
1 TTTTTTTAATTTTTTAAAT
4768175 AAATTTTTAG
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
38 14 0.15
39 24 0.26
40 55 0.59
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (40 bp):
TTTTTTTAATTTTTTAAATTTTAAAATATTTTTAAAATAC
Found at i:4769304 original size:46 final size:45
Alignment explanation
Indices: 4769206--4769323 Score: 186
Period size: 45 Copynumber: 2.6 Consensus size: 45
4769196 TTTGAGTACT
* *
4769206 TCTGATCAAGTGACAAAATGATAAGTGATAGTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTAGCTACACTTA
4769251 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-TTTAGCTACACTTA
*
4769297 TCTGATCAA-TAAC-AAGTGATAAGTGGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGT
4769324 GATAAAGTGA
Statistics
Matches: 69, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
44 14 0.20
45 32 0.46
46 23 0.33
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.31
Consensus pattern (45 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTAGCTACACTTA
Found at i:4769336 original size:62 final size:64
Alignment explanation
Indices: 4769260--4769387 Score: 199
Period size: 62 Copynumber: 2.0 Consensus size: 64
4769250 ATCTGATCAA
* *
4769260 GTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA-T-A-ACAAGTGATAAGTG
1 GTGACAAAGTGATAAGCGGCAGCTTTAGCTACACTTATCTGATCAAGTGATA-AAGTGATAAGTG
*
4769322 GTGATAAAGTGATAAGCGGCAGCTTTAGCTACACTTATCTGATCAAGTGATAAAGTGATAAGTG
1 GTGACAAAGTGATAAGCGGCAGCTTTAGCTACACTTATCTGATCAAGTGATAAAGTGATAAGTG
4769386 GT
1 GT
4769388 AGCCTAGCTA
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
62 43 0.72
63 1 0.02
64 15 0.25
65 1 0.02
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (64 bp):
GTGACAAAGTGATAAGCGGCAGCTTTAGCTACACTTATCTGATCAAGTGATAAAGTGATAAGTG
Found at i:4769407 original size:45 final size:46
Alignment explanation
Indices: 4769322--4769428 Score: 150
Period size: 45 Copynumber: 2.4 Consensus size: 46
4769312 GTGATAAGTG
* *
4769322 GTGATAAAGTGATAAGCGGCAGCTTTAGCTACACTTATCTGATCAA
1 GTGATAAAGTGATAAGTGGCAGCTCTAGCTACACTTATCTGATCAA
*
4769368 GTGATAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTGATCAA
1 GTGATAAAGTGATAAGTGGCAGCTCTAGCTACACTTATCTGATCAA
4769413 -T-A-ACAAGTGATAAGTG
1 GTGATA-AAGTGATAAGTG
4769429 ATCATACGTA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
42 1 0.02
43 13 0.23
44 1 0.02
45 21 0.37
46 21 0.37
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (46 bp):
GTGATAAAGTGATAAGTGGCAGCTCTAGCTACACTTATCTGATCAA
Found at i:4776531 original size:3 final size:3
Alignment explanation
Indices: 4776523--4776576 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
4776513 TTTTCTTACC
4776523 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4776571 ATT ATT
1 ATT ATT
4776577 TCATTTATTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:4776821 original size:42 final size:42
Alignment explanation
Indices: 4776750--4777046 Score: 332
Period size: 42 Copynumber: 7.0 Consensus size: 42
4776740 TTTGCAGCGT
*
4776750 TTACAGAAATAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGC
1 TTACA-AAA-AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC
*
4776794 TTA-AAAAAATACGCCGCTAAAGATCATGTTCTTTAGCGGCAC
1 TTACAAAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGC
* *
4776836 TTATAAAAAAACGCCGCTAAAGATCATGTTCTTTAGTGGCGC
1 TTACAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC
* * *
4776878 TT-CAAAAAAACGCCGCTAAAGGTCACGTTCTTTAGCGGCAC
1 TTACAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC
* *
4776919 TT-CAAAAAAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGC
1 TTACAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC
* * * * ** *
4776960 TTTTAC-AACAAATGCCACTAAAGAACATGACCTATAGCGGCGC
1 --TTACAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC
* * * * *
4777003 ATACCAAGAAACGCCGCTAAAGCTCATGTTCTTTAGCAGCGC
1 TTACAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC
4777045 TT
1 TT
4777047 TCTTGACAAA
Statistics
Matches: 217, Mismatches: 30, Indels: 14
0.83 0.11 0.05
Matches are distributed among these distances:
41 77 0.35
42 97 0.45
43 39 0.18
44 4 0.02
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (42 bp):
TTACAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC
Found at i:4776926 original size:125 final size:126
Alignment explanation
Indices: 4776751--4777039 Score: 366
Period size: 125 Copynumber: 2.3 Consensus size: 126
4776741 TTGCAGCGTT
*
4776751 TACAGAAATAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTAAAAAAATACGCCGCTAAAG
1 TACA-AAA-AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTAAAAAAA-ACGCCGCTAAAG
* * ** * *
4776816 ATCATGTTCTTTAGCGGCACTTATA-AAAAAACGCCGCTAAAGATCATGTTCTTTAGTGGCGC-
63 ATCATGTTCTTTAGCGGCACTTATACAAAAAACGCCACTAAAGAACATGACCTATAGCGGCGCA
* * * * *
4776878 TTCAAAAAAACGCCGCTAAAGGTCACGTTCTTTAGCGGCACTTCAAAAAAATGCCGCTAAAGGTC
1 TACAAAAAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTAAAAAAAACGCCGCTAAAGATC
* * * *
4776943 ATGTTCTTTAGCGGCGCTTTTACAACAAATGCCACTAAAGAACATGACCTATAGCGGCGCA
66 ATGTTCTTTAGCGGCACTTATACAAAAAACGCCACTAAAGAACATGACCTATAGCGGCGCA
* * *
4777004 TACCAAGAAACGCCGCTAAAGCTCATGTTCTTTAGC
1 TACAAAAAAACGCCGCTAAAGGTCATGTTCTTTAGC
4777040 AGCGCTTTCT
Statistics
Matches: 139, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
124 33 0.24
125 69 0.50
126 34 0.24
127 3 0.02
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25
Consensus pattern (126 bp):
TACAAAAAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTAAAAAAAACGCCGCTAAAGATC
ATGTTCTTTAGCGGCACTTATACAAAAAACGCCACTAAAGAACATGACCTATAGCGGCGCA
Found at i:4777102 original size:85 final size:83
Alignment explanation
Indices: 4776760--4777085 Score: 267
Period size: 84 Copynumber: 3.9 Consensus size: 83
4776750 TTACAGAAAT
* * * *
4776760 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGC-TT-AAAAAAATACGCCGCTAAAG-ATCATG
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTAAACAA-ACGCCG-TAAAGTAACATG
*
4776822 TTCTTTAGCGGCACTTATAAAA
64 -ACTTTAGCGGCAC-TATAAAA
* * * *
4776844 AAACGCCGCTAAAGATCATGTTCTTTAGTGGCGC-TTC-AAAAAAACGCCGCTAAAGGTCACGT-
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTAAACAAACGCCG-TAAA-GTAACATG
*
4776906 TCTTTAGCGGCACT-TCAAAA
64 ACTTTAGCGGCACTAT-AAAA
* * * *
4776926 AAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTT-TACAACAAATGCCACTAAAG-AACATG
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTA-AACAAACGCC-GTAAAGTAACATG
* * *
4776989 ACCTATAGCGGCGC-ATACCAAG
64 A-CTTTAGCGGCACTATA--AAA
* * ** *
4777011 AAACGCCGCTAAAGCTCATGTTCTTTAGCAGCGCTTTCTTGACAAACGCCGTAATGTAACATGAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTAAACAAACGCCGTAAAGTAACATGAC
4777076 TTTTAGCGGC
66 -TTTAGCGGC
4777086 GCTTTTATAA
Statistics
Matches: 200, Mismatches: 26, Indels: 31
0.78 0.10 0.12
Matches are distributed among these distances:
81 1 0.00
82 39 0.19
83 29 0.14
84 69 0.34
85 61 0.31
86 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (83 bp):
AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTAAACAAACGCCGTAAAGTAACATGAC
TTTAGCGGCACTATAAAA
Found at i:4779339 original size:9 final size:9
Alignment explanation
Indices: 4779322--4779418 Score: 56
Period size: 9 Copynumber: 10.3 Consensus size: 9
4779312 TTTGTATTAG
*
4779322 GTAAATTAT
1 GTAAGTTAT
4779331 GTAAGTTAT
1 GTAAGTTAT
* *
4779340 GAAAGTAAT
1 GTAAGTTAT
4779349 GT-A-TTAT
1 GTAAGTTAT
4779356 GTAAGTTATT
1 GTAAGTTA-T
*
4779366 TTAAGTTAT
1 GTAAGTTAT
*
4779375 GTAATAAGTTCT
1 G---TAAGTTAT
4779387 GTATTA-TATAT
1 GTA--AGT-TAT
4779398 GTAAGTTAT
1 GTAAGTTAT
*
4779407 TTAAGTTAT
1 GTAAGTTAT
4779416 GTA
1 GTA
4779419 TTATGAAATT
Statistics
Matches: 67, Mismatches: 11, Indels: 20
0.68 0.11 0.20
Matches are distributed among these distances:
7 5 0.07
8 2 0.03
9 36 0.54
10 10 0.15
11 6 0.09
12 8 0.12
ACGTcount: A:0.36, C:0.01, G:0.16, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:4779525 original size:30 final size:30
Alignment explanation
Indices: 4779491--4779582 Score: 141
Period size: 30 Copynumber: 3.1 Consensus size: 30
4779481 AAATTTTATC
4779491 TTAATATTATATAAGTTATGTAATGAGAAA
1 TTAATATTATATAAGTTATGTAATGAGAAA
* *
4779521 TTAATATTATCTAAGTTATGTTA-GTAGAAA
1 TTAATATTATATAAGTTATGTAATG-AGAAA
*
4779551 TTAATATTATATAAGTTATGTAATTAGAAA
1 TTAATATTATATAAGTTATGTAATGAGAAA
4779581 TT
1 TT
4779583 TTATCTTAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
29 1 0.02
30 54 0.98
ACGTcount: A:0.43, C:0.01, G:0.12, T:0.43
Consensus pattern (30 bp):
TTAATATTATATAAGTTATGTAATGAGAAA
Found at i:4779657 original size:40 final size:40
Alignment explanation
Indices: 4779612--4779694 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
4779602 GTTATGTAAG
*
4779612 TTTATGTATG-ATGGCTACGCAAGTTATGTAATGTATCAAT
1 TTTATGTATGTA-GGATACGCAAGTTATGTAATGTATCAAT
*
4779652 TTTATGTATGTAGGATATGCAAGTTATGTAATGTATCAAT
1 TTTATGTATGTAGGATACGCAAGTTATGTAATGTATCAAT
4779692 TTT
1 TTT
4779695 TAAAAATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
40 39 0.98
41 1 0.03
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.43
Consensus pattern (40 bp):
TTTATGTATGTAGGATACGCAAGTTATGTAATGTATCAAT
Found at i:4782148 original size:365 final size:365
Alignment explanation
Indices: 4781478--4782190 Score: 1187
Period size: 365 Copynumber: 2.0 Consensus size: 365
4781468 TACATCGACA
*
4781478 TTTGCGGCGTTTTAATTAAAAACACCACTAAAATTTCAAGTACAGAAAGAAACAGCGTCGTTTTA
1 TTTGCGGCGTTTTAATTAAAAACACCACTAAAATTTCAAGTACAGAAAGAAACAGCGCCGTTTTA
* * *
4781543 TAAAAATATAAGGAAACATTCTGGCGTTTTCCCAAACACACCACAATTAATATATTATCTAACCG
66 TAAAAATATAAGGAAACATTCTGGCATTTTCCCAAAAACACCACAATTAATATATTATCGAACCG
* * * *
4781608 GCGTCGTTTTCAATAAATTTTATACATCCTTGCGGCATTTTTAATAAAACGCCACTAAAAGATTC
131 ACGCCGTTTTCAATAAATTTTATACATCATTGCGGCATTTATAATAAAACGCCACTAAAAGATTC
* * *
4781673 CATCCTTCAACTGAAACGGCGCCGTTTTTGCAAAGTTCAAATATTATTTATGGCACTTTTCGGAA
196 CATCCTTCAACTGAAACGGCGCCGTTTTGGCAAAGTTCAAATATTATTTACGGCACTTTTCGAAA
*
4781738 AAAAGCCACAACTAAAATTTATTCCCTAAGCCGAAACGACGCCGTATCGGTAAATGCAATAAATA
261 AAAAGCCACAACTAAAACTTATTCCCTAAGCCGAAACGACGCCGTATCGGTAAATGCAATAAATA
4781803 TTTGTGGCATTTTTTATCAAAACACCGGTAATGTCTACCT
326 TTTGTGGCATTTTTTATCAAAACACCGGTAATGTCTACCT
* *
4781843 TTTGCGGCGTTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGCGCCGTTTTA
1 TTTGCGGCGTTTTAATTAAAAACACCACTAAAATTTCAAGTACAGAAAGAAACAGCGCCGTTTTA
* *
4781908 TAAAAATATAAGGCAACATTCTGGCATTTTCCCAAAAACGCCACAATTAATATATTATCGAACCG
66 TAAAAATATAAGGAAACATTCTGGCATTTTCCCAAAAACACCACAATTAATATATTATCGAACCG
* *
4781973 ACGCCGTTTTCAGA-AAATTTTATACATCATTGCGGCGTTTATAATAAAACGCCACTAAAATATT
131 ACGCCGTTTTCA-ATAAATTTTATACATCATTGCGGCATTTATAATAAAACGCCACTAAAAGATT
* *
4782037 CCATCCTTCAACTGAAACGGCGCCGTTTTGGCAAAGTTTAAATATTATTTACGGCGCTTTTC-AA
195 CCATCCTTCAACTGAAACGGCGCCGTTTTGGCAAAGTTCAAATATTATTTACGGCACTTTTCGAA
* *
4782101 AAAAACGCGACAACTAAAACTTATTCCCTAAGTCGAAACGACGCCGTATCGGTAAATGCAATAAA
260 AAAAA-GCCACAACTAAAACTTATTCCCTAAGCCGAAACGACGCCGTATCGGTAAATGCAATAAA
*
4782166 TTTTTGTGGCATTTTTTATCAAAAC
324 TATTTGTGGCATTTTTTATCAAAAC
4782191 GCCGCTAAAT
Statistics
Matches: 323, Mismatches: 23, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
364 6 0.02
365 316 0.98
366 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.30
Consensus pattern (365 bp):
TTTGCGGCGTTTTAATTAAAAACACCACTAAAATTTCAAGTACAGAAAGAAACAGCGCCGTTTTA
TAAAAATATAAGGAAACATTCTGGCATTTTCCCAAAAACACCACAATTAATATATTATCGAACCG
ACGCCGTTTTCAATAAATTTTATACATCATTGCGGCATTTATAATAAAACGCCACTAAAAGATTC
CATCCTTCAACTGAAACGGCGCCGTTTTGGCAAAGTTCAAATATTATTTACGGCACTTTTCGAAA
AAAAGCCACAACTAAAACTTATTCCCTAAGCCGAAACGACGCCGTATCGGTAAATGCAATAAATA
TTTGTGGCATTTTTTATCAAAACACCGGTAATGTCTACCT
Found at i:4782264 original size:24 final size:23
Alignment explanation
Indices: 4782237--4782317 Score: 99
Period size: 24 Copynumber: 3.2 Consensus size: 23
4782227 TGTATCATTC
4782237 ATTTAAATAATTAATTACCTATCT
1 ATTTAAATAATTAATTACCTAT-T
4782261 ATTTAAATAATTAATTACCTAAAAATT
1 ATTTAAATAATTAATTACCT----ATT
4782288 AATTTAAATAATTAATTACCTATTT
1 -ATTTAAATAATTAATTACCTA-TT
4782313 ATTTA
1 ATTTA
4782318 TTTGTTTATT
Statistics
Matches: 51, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
24 26 0.51
25 2 0.04
27 1 0.02
28 22 0.43
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTTAAATAATTAATTACCTATT
Found at i:4782302 original size:13 final size:13
Alignment explanation
Indices: 4782261--4782304 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 13
4782251 TTACCTATCT
4782261 ATTTAAATAATTA
1 ATTTAAATAATTA
4782274 ATTACCTAAA-AATTA
1 ATT---TAAATAATTA
4782289 ATTTAAATAATTA
1 ATTTAAATAATTA
4782302 ATT
1 ATT
4782305 ACCTATTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 4 0.15
13 11 0.41
15 8 0.30
16 4 0.15
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (13 bp):
ATTTAAATAATTA
Found at i:4782320 original size:28 final size:26
Alignment explanation
Indices: 4782237--4782320 Score: 91
Period size: 28 Copynumber: 3.2 Consensus size: 26
4782227 TGTATCATTC
*
4782237 ATTTAAATAATTAATTACC--TATCT
1 ATTTAAATAATTAATTACCTATATTT
* *
4782261 ATTTAAATAATTAATTACCTAAAAATTA
1 ATTTAAATAATTAATTACCT--ATATTT
4782289 ATTTAAATAATTAATTACCTATTTATTT
1 ATTTAAATAATTAATTACCTA--TATTT
4782317 ATTT
1 ATTT
4782321 GTTTATTTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
24 19 0.39
26 1 0.02
28 29 0.59
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (26 bp):
ATTTAAATAATTAATTACCTATATTT
Found at i:4782761 original size:14 final size:14
Alignment explanation
Indices: 4782739--4782772 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
4782729 GATCTTGAAT
*
4782739 CCCTAACCCTTAAC
1 CCCTAACCCATAAC
*
4782753 CCCTGACCCATAAC
1 CCCTAACCCATAAC
4782767 CCCTAA
1 CCCTAA
4782773 ACCTTATTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.50, G:0.03, T:0.18
Consensus pattern (14 bp):
CCCTAACCCATAAC
Found at i:4782898 original size:14 final size:14
Alignment explanation
Indices: 4782857--4782910 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
4782847 ATCTTAAATT
* *
4782857 CCTAACTCTTAACA
1 CCTAACCCTTAACC
* *
4782871 TCTAACCCCTAACC
1 CCTAACCCTTAACC
4782885 CCTAACCCTTAACC
1 CCTAACCCTTAACC
* *
4782899 CATAAACCTTAA
1 CCTAACCCTTAA
4782911 ATCACATTAA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.35, C:0.41, G:0.00, T:0.24
Consensus pattern (14 bp):
CCTAACCCTTAACC
Found at i:4783757 original size:114 final size:114
Alignment explanation
Indices: 4783557--4783997 Score: 584
Period size: 114 Copynumber: 3.9 Consensus size: 114
4783547 CGCCACTAAA
* * * * *
4783557 CATTAGCGGCGCTTTA-TTAAAAACGTCACTAAATCCACGAAAGCTCAGAAAACGGCGTTGTTGG
1 CATTAGCGGCGC-TTACATAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGG
* * ** **
4783621 GCTTAGGTTTCTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAAACCTGAG
65 GCTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCCGCTAAAGCCCTGAG
* *
4783671 CATTAGCTGTGCTTACATAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGG
1 CATTAGCGGCGCTTACATAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGG
*
4783736 CTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCAGCTAAAGCCCTGAG
66 CTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCCGCTAAAGCCCTGAG
* * * *
4783785 CGTTAGCGGCGCTTA-ATTAAAAACACTGCTAAATCCCCGAAAGCTCAGAAAATGGCGTCGTTGG
1 CATTAGCGGCGCTTACA-TAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGG
* *
4783849 GCTTAGGTTTTTTTGTGGCACTTTAGCAAAAACGCCGCTAAAGCCCT-AGG
65 GCTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCCGCTAAAGCCCTGA-G
* * * * * *
4783899 CATTAGCGGCGCTTCCCTAAAAACGCTGGTAAATCCTCGAAAGCTAAGAAAACGGCGTCGTTGGG
1 CATTAGCGGCGCTTACATAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGG
*
4783964 ATTAGG-TTTTTTGTGGCGCTTTATCAAAAACGCC
66 CTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCC
4783998 ACTGAATCCC
Statistics
Matches: 289, Mismatches: 34, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
113 31 0.11
114 258 0.89
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (114 bp):
CATTAGCGGCGCTTACATAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGG
CTTAGGTTTTTTTGTGGCGCTTTATCAAAAACGCCGCTAAAGCCCTGAG
Found at i:4784039 original size:186 final size:187
Alignment explanation
Indices: 4783816--4784180 Score: 551
Period size: 186 Copynumber: 2.0 Consensus size: 187
4783806 AACACTGCTA
*
4783816 AATCCCCGAAAGCTCAGAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCACTTT-AGCAAAA
1 AATCCCCGAAAGCTAAGAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCACTTTCA--AAAA
* * *
4783880 A-CGCCGCTAAAGCCCTAGGCATTAGCGGCGCTTCCCTAAAAACGCTGGTAAATCCTCGAAAGCT
64 ATCGCCGCTAAAGCCCTAGGCATTAGCGGCGCTTCCCTAAAAACGCCGCTAAATCCCCGAAAGCT
* * *
4783944 AAGAAAACGGCGTCGTTGGGATTAGG-TTTTTTGTGGCGCTTT-ATCAAAAACGCCACTG
129 AAGAAAACGACGCCATTGGGATTAGGTTTTTTTGTGGCGCTTTCA-CAAAAACGCCACTG
*
4784002 AATCCCC-ATAAGCTAAGAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTCAAAAAA
1 AATCCCCGA-AAGCTAAGAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCACTTTCAAAAAA
* * *
4784066 TTGTCGCTAAAGCCCTAGGCATTAGCGGCGCTTCCCTAAAAACGCCGCTAAATCCCCGAAAGCTC
65 TCGCCGCTAAAGCCCTAGGCATTAGCGGCGCTTCCCTAAAAACGCCGCTAAATCCCCGAAAGCTA
*
4784131 AGAAAACGACGCCATTGGGCTTAGGTTTTTTTGTGGCGCTTTCACAAAAA
130 AGAAAACGACGCCATTGGGATTAGGTTTTTTTGTGGCGCTTTCACAAAAA
4784181 TGCTACTAAA
Statistics
Matches: 162, Mismatches: 12, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
185 6 0.04
186 132 0.81
187 23 0.14
188 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (187 bp):
AATCCCCGAAAGCTAAGAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCACTTTCAAAAAAT
CGCCGCTAAAGCCCTAGGCATTAGCGGCGCTTCCCTAAAAACGCCGCTAAATCCCCGAAAGCTAA
GAAAACGACGCCATTGGGATTAGGTTTTTTTGTGGCGCTTTCACAAAAACGCCACTG
Found at i:4784234 original size:300 final size:300
Alignment explanation
Indices: 4783689--4784277 Score: 814
Period size: 300 Copynumber: 2.0 Consensus size: 300
4783679 GTGCTTACAT
* *
4783689 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGC
1 AAAAACGCCACTAAATCCCCGAAAGCTAAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGC
* * *
4783754 GCTTTATCAAAAACGCAGCTAAAGCCCTGAGCGTTAGCGGCGCTTAATTAAAAACACTGCTAAAT
66 GCTTTA-CAAAAACGCAGCTAAAGCCCTGAGCATTAGCGGCGCTTAACTAAAAACACCGCTAAAT
* * * *
4783819 CCCCGAAAGCTCAGAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCACTTTAGCAAAAACGC
130 CCCCGAAAGCTCAGAAAACGACGCCATTGGGCTTAGGTTTTTTTGTGGCACTTTAGCAAAAACGC
* * ***
4783884 CGCTAAAGCCCTAGGCATTAGCGGCGCTTCCCTAAAAACGCTGGTAAAT-CCTCGAAAGCTAAGA
195 CACTAAAGCCCTAGGCATTAGCAGCGCTTCCCTAAAAACGCCACTAAATCCCTCGAAAGCTAAGA
*
4783948 AAACGGCGTCGTTGGGATTAGGTTTTTTGTGGCGCTTTATC
260 AAACGGCGTCGTTGGGATTAGGTATTTTGTGGCGCTTTATC
* *
4783989 AAAAACGCCACTGAATCCCC-ATAAGCTAAGAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGTGG
1 AAAAACGCCACTAAATCCCCGA-AAGCTAAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGG
* ** *
4784053 CGCTTT-CAAAAAATTGTC-GCTAAAGCCCT-AGGCATTAGCGGCGCTTCCCTAAAAACGCCGCT
65 CGCTTTAC-AAAAA-CG-CAGCTAAAGCCCTGA-GCATTAGCGGCGCTTAACTAAAAACACCGCT
*
4784115 AAATCCCCGAAAGCTCAGAAAACGACGCCATTGGGCTTAGGTTTTTTTGTGGCGCTTTCA-CAAA
126 AAATCCCCGAAAGCTCAGAAAACGACGCCATTGGGCTTAGGTTTTTTTGTGGCACTTT-AGCAAA
* * *
4784179 AATGCTACTAAAGCCCT-GAGCATTAGCAGCGCTTCCTTAAAAACGCCACTAAATCCCTCGAAAG
190 AACGCCACTAAAGCCCTAG-GCATTAGCAGCGCTTCCCTAAAAACGCCACTAAATCCCTCGAAAG
* *
4784243 CTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTG
254 CTAAGAAAACGGCGTCGTTGGGATTAGGTATTTTG
4784278 CAACGCTTTC
Statistics
Matches: 254, Mismatches: 27, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
298 1 0.00
299 8 0.03
300 202 0.80
301 43 0.17
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (300 bp):
AAAAACGCCACTAAATCCCCGAAAGCTAAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGC
GCTTTACAAAAACGCAGCTAAAGCCCTGAGCATTAGCGGCGCTTAACTAAAAACACCGCTAAATC
CCCGAAAGCTCAGAAAACGACGCCATTGGGCTTAGGTTTTTTTGTGGCACTTTAGCAAAAACGCC
ACTAAAGCCCTAGGCATTAGCAGCGCTTCCCTAAAAACGCCACTAAATCCCTCGAAAGCTAAGAA
AACGGCGTCGTTGGGATTAGGTATTTTGTGGCGCTTTATC
Found at i:4784287 original size:114 final size:114
Alignment explanation
Indices: 4783989--4784276 Score: 404
Period size: 114 Copynumber: 2.5 Consensus size: 114
4783979 GCGCTTTATC
* * *
4783989 AAAAACGCCACTGAATCCCC-ATAAGCTAAGAAAATGGCGTCGTTGGGCTTAGGTTTTTTTGTGG
1 AAAAACGCCACTAAATCCCCGA-AAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGG
* *
4784053 CGCTTTCAAAAAATTGTCGCTAAAGCCCTAGGCATTAGCGGCGCTTCCCT
65 CGCTTTCAAAAAATTGTCACTAAAGCCCTAGGCATTAGCAGCGCTTCCCT
* * * *
4784103 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGCCATTGGGCTTAGGTTTTTTTGTGGC
1 AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGC
*
4784168 GCTTTCACAAAAA-TG-CTACTAAAGCCCT-GAGCATTAGCAGCGCTTCCTT
66 GCTTTCA-AAAAATTGTC-ACTAAAGCCCTAG-GCATTAGCAGCGCTTCCCT
*
4784217 AAAAACGCCACTAAATCCCTCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTT
1 AAAAACGCCACTAAATCCC-CGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTT
4784277 GCAACGCTTT
Statistics
Matches: 154, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
113 2 0.01
114 110 0.71
115 42 0.27
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (114 bp):
AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGC
GCTTTCAAAAAATTGTCACTAAAGCCCTAGGCATTAGCAGCGCTTCCCT
Found at i:4784644 original size:12 final size:12
Alignment explanation
Indices: 4784627--4784656 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
4784617 ATTCTCGAAA
4784627 ATTGTCTTTATT
1 ATTGTCTTTATT
4784639 ATTGTCTTTATT
1 ATTGTCTTTATT
4784651 ATTGTC
1 ATTGTC
4784657 ATTTTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.17, C:0.10, G:0.10, T:0.63
Consensus pattern (12 bp):
ATTGTCTTTATT
Found at i:4787645 original size:35 final size:35
Alignment explanation
Indices: 4787592--4787682 Score: 119
Period size: 38 Copynumber: 2.5 Consensus size: 35
4787582 TATTTTTTAT
** *
4787592 TTAAATCAACCAAATAATATTTTTATAAAAGTCAA
1 TTAAATCAAATAATTAATATTTTTATAAAAGTCAA
*
4787627 TTAAATCAAATAATTAATAATATTTTTATAAAAGTTAA
1 TTAAATCAAATAA-T--TAATATTTTTATAAAAGTCAA
4787665 TTAAATCAAATAATTAAT
1 TTAAATCAAATAATTAAT
4787683 CCATATGCAA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
35 15 0.31
37 1 0.02
38 33 0.67
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.38
Consensus pattern (35 bp):
TTAAATCAAATAATTAATATTTTTATAAAAGTCAA
Found at i:4787655 original size:38 final size:38
Alignment explanation
Indices: 4787604--4787682 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
4787594 AAATCAACCA
4787604 AATAATATTTTTATAAAAGTCAATTAAATCAAATAATT
1 AATAATATTTTTATAAAAGTCAATTAAATCAAATAATT
*
4787642 AATAATATTTTTATAAAAGTTAATTAAATCAAATAATT
1 AATAATATTTTTATAAAAGTCAATTAAATCAAATAATT
4787680 AAT
1 AAT
4787683 CCATATGCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.41
Consensus pattern (38 bp):
AATAATATTTTTATAAAAGTCAATTAAATCAAATAATT
Found at i:4790572 original size:22 final size:23
Alignment explanation
Indices: 4790547--4790601 Score: 85
Period size: 22 Copynumber: 2.4 Consensus size: 23
4790537 CTTGGAGGAT
*
4790547 TGGAGGTGGATCGTTGCCGGA-C
1 TGGAGGTGGATCGGTGCCGGAGC
*
4790569 TGGAGGTGGATCGGTGCCGGAGG
1 TGGAGGTGGATCGGTGCCGGAGC
4790592 TGGAGGTGGA
1 TGGAGGTGGA
4790602 GGTTGAGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 20 0.67
23 10 0.33
ACGTcount: A:0.15, C:0.13, G:0.53, T:0.20
Consensus pattern (23 bp):
TGGAGGTGGATCGGTGCCGGAGC
Found at i:4790668 original size:17 final size:17
Alignment explanation
Indices: 4790646--4790680 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
4790636 GGATTTCTAG
4790646 AATAGGGGAAACGGGGA
1 AATAGGGGAAACGGGGA
*
4790663 AATAGGGGAAATGGGGA
1 AATAGGGGAAACGGGGA
4790680 A
1 A
4790681 GAAAATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.09
Consensus pattern (17 bp):
AATAGGGGAAACGGGGA
Found at i:4792434 original size:22 final size:22
Alignment explanation
Indices: 4792409--4792500 Score: 112
Period size: 22 Copynumber: 4.2 Consensus size: 22
4792399 AAATTCAATA
* *
4792409 TCAATTTCTTTCAAAAATTCTC
1 TCAATTCCCTTCAAAAATTCTC
* *
4792431 TCAATTCCTTTCAAAATTTCTC
1 TCAATTCCCTTCAAAAATTCTC
* *
4792453 TCAATTCCCTTCAAAATTTCTA
1 TCAATTCCCTTCAAAAATTCTC
* *
4792475 TCAATTTCCTTCCAAAATTCTC
1 TCAATTCCCTTCAAAAATTCTC
4792497 TCAA
1 TCAA
4792501 ACTATCAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 62 1.00
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.42
Consensus pattern (22 bp):
TCAATTCCCTTCAAAAATTCTC
Done.