Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 160 of 230
Found at i:47368296 original size:29 final size:29
Alignment explanation
Indices: 47368241--47368309 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
47368231 TAGGGATAGG
47368241 AAATTTCATTAGGATATCTTAAGTTAATT
1 AAATTTCATTAGGATATCTTAAGTTAATT
* * *
47368270 AAATTCCATTAGGTTAT-TTTAGATTAATT
1 AAATTTCATTAGGATATCTTAAG-TTAATT
47368299 -AATTTCATTAG
1 AAATTTCATTAG
47368310 TTTAATTAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 14 0.40
29 21 0.60
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.46
Consensus pattern (29 bp):
AAATTTCATTAGGATATCTTAAGTTAATT
Found at i:47380504 original size:47 final size:47
Alignment explanation
Indices: 47380447--47380556 Score: 157
Period size: 47 Copynumber: 2.3 Consensus size: 47
47380437 AAGGAAGACG
* *
47380447 AAGTGACAGTTTATCTACACAAGTGGTGGCTTGTCCACAATATTATA
1 AAGTGGCAGTTTATCTACAAAAGTGGTGGCTTGTCCACAATATTATA
* * * *
47380494 AAGTGGCAGTTTATCTGCAAAATTGGTGGCTTGTCCATAATATTATT
1 AAGTGGCAGTTTATCTACAAAAGTGGTGGCTTGTCCACAATATTATA
*
47380541 AAGTGGTAGTTTATCT
1 AAGTGGCAGTTTATCT
47380557 TCATTACTGT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (47 bp):
AAGTGGCAGTTTATCTACAAAAGTGGTGGCTTGTCCACAATATTATA
Found at i:47385446 original size:27 final size:27
Alignment explanation
Indices: 47385414--47385557 Score: 146
Period size: 27 Copynumber: 5.3 Consensus size: 27
47385404 ACCCTAATCT
* *
47385414 ACAGCTTGTGTGAGTAACCCAAATATC
1 ACAGCTTGTGTGAGTAATCTAAATATC
* *
47385441 ACAGCTTGTGTAAGCAATCTAAATATC
1 ACAGCTTGTGTGAGTAATCTAAATATC
* * *
47385468 ACAACTTGTGTGAGTAATATAAATATT
1 ACAGCTTGTGTGAGTAATCTAAATATC
* * *
47385495 ACAGCTTGTGTGAGCAATCTGAATATT
1 ACAGCTTGTGTGAGTAATCTAAATATC
* * * *
47385522 ACAACTTGTGTGA-TCAATTTAAAGATT
1 ACAGCTTGTGTGAGT-AATCTAAATATC
47385549 ACAGCTTGT
1 ACAGCTTGT
47385558 ACGAGTGGAT
Statistics
Matches: 97, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (27 bp):
ACAGCTTGTGTGAGTAATCTAAATATC
Found at i:47385550 original size:54 final size:54
Alignment explanation
Indices: 47385418--47385557 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
47385408 TAATCTACAG
*** * *
47385418 CTTGTGTGAGTAACCCAAATATCACAGCTTGTGTAAGCAATCTAAATATCACAA
1 CTTGTGTGAGTAATATAAAGATTACAGCTTGTGTAAGCAATCTAAATATCACAA
* * * *
47385472 CTTGTGTGAGTAATATAAATATTACAGCTTGTGTGAGCAATCTGAATATTACAA
1 CTTGTGTGAGTAATATAAAGATTACAGCTTGTGTAAGCAATCTAAATATCACAA
*
47385526 CTTGTGTGA-TCAATTTAAAGATTACAGCTTGT
1 CTTGTGTGAGT-AATATAAAGATTACAGCTTGT
47385558 ACGAGTGGAT
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
53 1 0.01
54 75 0.99
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (54 bp):
CTTGTGTGAGTAATATAAAGATTACAGCTTGTGTAAGCAATCTAAATATCACAA
Found at i:47394414 original size:197 final size:194
Alignment explanation
Indices: 47394074--47394466 Score: 725
Period size: 197 Copynumber: 2.0 Consensus size: 194
47394064 ATTAAATTAA
47394074 GATTTTTATTTTGGGAAATAGAAAAATAAATATTGGGTTAGATTGAATTATAAAGTACTTGGTTA
1 GATTTTTATTTTGGGAAATAGAAAAATAAATATTGGGTTAGATTGAATTATAAAGTACTTGGTTA
*
47394139 AAATTCTGAGTACTTTTAATTAGACTCGATATGGGAGAGGCCCAAAAGCCCCTTTTTTAAAAGAG
66 AAAGTCTGAGTACTTTTAATTAGACTCGATATGGGAGAGGCCCAAAAGCCCCTTTTTTAAAAGAG
47394204 AGGGACGACAAACCCTAGTTTGTTTAACTAGGTTTGTCACCCCACCTAATCCTACTTAGACTAG
131 AGGGACGACAAACCCTAGTTTGTTTAACTAGGTTTGTCACCCCACCTAATCCTACTTAGACTAG
47394268 GATTTTTATTTTGGGAAATAGAAAAATAAATATTGGGTTAGATTGAATTATAAAGTACTTGGTTA
1 GATTTTTATTTTGGGAAATAGAAAAATAAATATTGGGTTAGATTGAATTATAAAGTACTTGGTTA
47394333 AAAGTCTAAGGAGTACTTTTAATTAGACTCGATATGGGAGAGGCCCAAAAGCCCCTTTGTTT-AA
66 AAAGTCT---GAGTACTTTTAATTAGACTCGATATGGGAGAGGCCCAAAAGCCCCTTT-TTTAAA
*
47394397 AGAGAGGGACGACAAACCCTAGTTTGTTTAACTAGGTTTGTCACCCTACCTAATCCTACTTAGAC
127 AGAGAGGGACGACAAACCCTAGTTTGTTTAACTAGGTTTGTCACCCCACCTAATCCTACTTAGAC
47394462 TAG
192 TAG
47394465 GA
1 GA
47394467 GTTCGTTTTT
Statistics
Matches: 193, Mismatches: 2, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
194 71 0.37
197 119 0.62
198 3 0.02
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32
Consensus pattern (194 bp):
GATTTTTATTTTGGGAAATAGAAAAATAAATATTGGGTTAGATTGAATTATAAAGTACTTGGTTA
AAAGTCTGAGTACTTTTAATTAGACTCGATATGGGAGAGGCCCAAAAGCCCCTTTTTTAAAAGAG
AGGGACGACAAACCCTAGTTTGTTTAACTAGGTTTGTCACCCCACCTAATCCTACTTAGACTAG
Found at i:47396550 original size:20 final size:19
Alignment explanation
Indices: 47396525--47396573 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
47396515 GCAAAGATGA
47396525 GAAATGAAATATGAAATGGT
1 GAAATGAAATATG-AATGGT
* *
47396545 GAAATGAAATGTGAATTGT
1 GAAATGAAATATGAATGGT
*
47396564 GAAATAAAAT
1 GAAATGAAAT
47396574 CAAGTATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.27
Consensus pattern (19 bp):
GAAATGAAATATGAATGGT
Found at i:47405122 original size:54 final size:54
Alignment explanation
Indices: 47405013--47405130 Score: 130
Period size: 54 Copynumber: 2.2 Consensus size: 54
47405003 GACATAGCCG
* * * * *
47405013 TGTGACGCAAGTCAGTGAGTTATACGGACAGACACACGGCCTGTGATACGACCA
1 TGTGACCCAAGTCAATGAGTTACACGGACAGACACACGGACTGTGACACGACCA
* * * *
47405067 TGTGACCCAAGTCAATGAGTTACACGGGCAGAGACACGAGATTG-GACACGGCCA
1 TGTGACCCAAGTCAATGAGTTACACGGACAGACACACG-GACTGTGACACGACCA
*
47405121 TGTGTCCCAA
1 TGTGACCCAA
47405131 CTTCGAAAGC
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 50 0.94
55 3 0.06
ACGTcount: A:0.30, C:0.25, G:0.28, T:0.18
Consensus pattern (54 bp):
TGTGACCCAAGTCAATGAGTTACACGGACAGACACACGGACTGTGACACGACCA
Found at i:47407267 original size:4 final size:4
Alignment explanation
Indices: 47407258--47407347 Score: 135
Period size: 4 Copynumber: 22.5 Consensus size: 4
47407248 GTTTAGGGTG
47407258 CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT
1 CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT
* * * * *
47407306 CTCA CTCA CTCT CTCT CTCT CTCT CACT CACT CACT CTCT CT
1 CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CT
47407348 TTCTACTCCC
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 82 1.00
ACGTcount: A:0.06, C:0.50, G:0.00, T:0.44
Consensus pattern (4 bp):
CTCT
Found at i:47407286 original size:22 final size:22
Alignment explanation
Indices: 47407258--47407355 Score: 135
Period size: 22 Copynumber: 4.5 Consensus size: 22
47407248 GTTTAGGGTG
* *
47407258 CTCTCTCTCTCTCTCTCTCTCT
1 CTCTCTCACTCACTCTCTCTCT
* *
47407280 CTCTCTCTCTCTCTCTCTCTCT
1 CTCTCTCACTCACTCTCTCTCT
47407302 CTCTCTCACTCACTCTCTCTCT
1 CTCTCTCACTCACTCTCTCTCT
*
47407324 CTCTCTCACTCACTCACTCTCT
1 CTCTCTCACTCACTCTCTCTCT
*
47407346 CTTTCT-ACTC
1 CTCTCTCACTC
47407356 CCTTAATCTC
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
21 4 0.06
22 68 0.94
ACGTcount: A:0.06, C:0.49, G:0.00, T:0.45
Consensus pattern (22 bp):
CTCTCTCACTCACTCTCTCTCT
Found at i:47407546 original size:24 final size:24
Alignment explanation
Indices: 47407519--47407567 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
47407509 TCATCTTTAA
47407519 TTATGCTTAGTTTTAACTGTTTCC
1 TTATGCTTAGTTTTAACTGTTTCC
* **
47407543 TTATTCTTAGTTTTAGTTGTTTCC
1 TTATGCTTAGTTTTAACTGTTTCC
47407567 T
1 T
47407568 ACATTTTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.12, T:0.59
Consensus pattern (24 bp):
TTATGCTTAGTTTTAACTGTTTCC
Found at i:47409648 original size:89 final size:89
Alignment explanation
Indices: 47409470--47409654 Score: 196
Period size: 89 Copynumber: 2.1 Consensus size: 89
47409460 TTTAGTCCCT
* *
47409470 TTTTTTTTCACTCATTTGGTTACTTGAACTTTCAAAATGCATCAAAAAGATCCTCAAACCTTTTC
1 TTTTTTTGCACTCAATTGGTTACTTGAACTTTCAAAATGCATCAAAAAGATCCTCAAACCTTTTC
** *** **
47409535 AAAAAAAGCAATTTATCCCCCCCC
66 AAAAAAAAAAAGCAATCAACCCCC
* *
47409559 TTTTTTTGCACTCAATT-GTGTACTTGAACTTTCAAAATGCATCAAAAATA-CCTTTAAA-CTAT
1 TTTTTTTGCACTCAATTGGT-TACTTGAACTTTCAAAATGCATCAAAAAGATCC-TCAAACCT-T
* *
47409621 TTCAAAAAAAAAAAGCAATTAAGCCCC
63 TTCAAAAAAAAAAAGCAATCAACCCCC
*
47409648 TGTTTTT
1 TTTTTTT
47409655 ATTACAAATT
Statistics
Matches: 79, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
88 6 0.08
89 73 0.92
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.36
Consensus pattern (89 bp):
TTTTTTTGCACTCAATTGGTTACTTGAACTTTCAAAATGCATCAAAAAGATCCTCAAACCTTTTC
AAAAAAAAAAAGCAATCAACCCCC
Found at i:47409750 original size:9 final size:9
Alignment explanation
Indices: 47409738--47409825 Score: 54
Period size: 9 Copynumber: 9.7 Consensus size: 9
47409728 AAAAATTAGA
47409738 AAAAAATAT
1 AAAAAATAT
*
47409747 -AAAAATCGT
1 AAAAAAT-AT
47409756 AAAAAATAT
1 AAAAAATAT
* *
47409765 AAAAATTCT
1 AAAAAATAT
**
47409774 AAAATTTTAT
1 AAAA-AATAT
* *
47409784 AAAAATTCT
1 AAAAAATAT
47409793 AAAAAA-AT
1 AAAAAATAT
*
47409801 ATAAAATAT
1 AAAAAATAT
*
47409810 ATAGAAATAT
1 A-AAAAATAT
47409820 AAAAAA
1 AAAAAA
47409826 ATTATAAATT
Statistics
Matches: 60, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
8 12 0.20
9 28 0.47
10 20 0.33
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.27
Consensus pattern (9 bp):
AAAAAATAT
Found at i:47409751 original size:19 final size:19
Alignment explanation
Indices: 47409721--47409806 Score: 93
Period size: 19 Copynumber: 4.5 Consensus size: 19
47409711 AATAAAAATC
*
47409721 AAATATTAAAAATTAGAAAA
1 AAATA-TAAAAATTCGAAAA
*
47409741 AAATATAAAAA-TCGTAAA
1 AAATATAAAAATTCGAAAA
*
47409759 AAATATAAAAATTCTAAAA
1 AAATATAAAAATTCGAAAA
*** *
47409778 TTTTATAAAAATTCTAAAA
1 AAATATAAAAATTCGAAAA
47409797 AAATATAAAA
1 AAATATAAAA
47409807 TATATAGAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
18 16 0.29
19 34 0.62
20 5 0.09
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.28
Consensus pattern (19 bp):
AAATATAAAAATTCGAAAA
Found at i:47410130 original size:25 final size:25
Alignment explanation
Indices: 47410053--47410130 Score: 65
Period size: 25 Copynumber: 3.1 Consensus size: 25
47410043 TTTTTTTATG
47410053 ATTTTTATAA-AA-TTTTACAATTTTT
1 ATTTTT-TAATAATTTTTA-AATTTTT
* * *
47410078 ATTTTTT-CT-ATTTTATAAAAATTCT
1 ATTTTTTAATAATTTT-T-AAATTTTT
47410103 ATTTTTTAATAATTTTTAAATTTTT
1 ATTTTTTAATAATTTTTAAATTTTT
47410128 ATT
1 ATT
47410131 AAAAATTAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
23 1 0.02
24 4 0.10
25 28 0.68
26 3 0.07
27 5 0.12
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (25 bp):
ATTTTTTAATAATTTTTAAATTTTT
Found at i:47410144 original size:19 final size:19
Alignment explanation
Indices: 47410118--47410166 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
47410108 TTAATAATTT
47410118 TTAA-ATTTTTAT-TAAAAA
1 TTAATATTTTT-TCTAAAAA
*
47410136 TTAATATTTTTTCTAAAAT
1 TTAATATTTTTTCTAAAAA
*
47410155 TTATTATTTTTT
1 TTAATATTTTTT
47410167 ATAATCCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 5 0.19
19 22 0.81
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
TTAATATTTTTTCTAAAAA
Found at i:47410395 original size:91 final size:90
Alignment explanation
Indices: 47410193--47410398 Score: 225
Period size: 91 Copynumber: 2.3 Consensus size: 90
47410183 TTTTAATAAG
* ** * * * * *
47410193 AGCAGGGACTTAATTACATTTTTGAAAAATTTTGAGTGTCTTTTTTATGCATTTTGAAAGTTCAA
1 AGCAAGGACTTAATTATTTTTTTGAAAAAGTTTGAGGGCCTTTTTAATGCATTTTAAAAGTTCAA
* **
47410258 GTACCCAATTGAGTGGAAAAAGAAA
66 GTACCCAATTGAATACAAAAAGAAA
* *
47410283 AGCAATGG-CTTAATTGCTTTTTTTGAAGAAGTTTGAGGGCCTTTTTAATGCATTTTAAAAGTTC
1 AGCAA-GGACTTAATT-ATTTTTTTGAAAAAGTTTGAGGGCCTTTTTAATGCATTTTAAAAGTTC
* *
47410347 AAGTGCTCAATTGAATACAAAAAGAAAAA
64 AAGTACCCAATTGAATACAAAAAG--AAA
*
47410376 AGCAAGGACTTAATTTTTTTTTT
1 AGCAAGGACTTAATTATTTTTTT
47410399 AAAGTTTTTT
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
90 11 0.12
91 60 0.63
92 9 0.09
93 15 0.16
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (90 bp):
AGCAAGGACTTAATTATTTTTTTGAAAAAGTTTGAGGGCCTTTTTAATGCATTTTAAAAGTTCAA
GTACCCAATTGAATACAAAAAGAAA
Found at i:47411091 original size:17 final size:18
Alignment explanation
Indices: 47411050--47411099 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
47411040 AACTGTTGTT
*
47411050 TTTTCTTGTTGTTTTTTA
1 TTTTCTTGTTGTTTTCTA
* *
47411068 CTCTCTT-TTGTTTTCTA
1 TTTTCTTGTTGTTTTCTA
*
47411085 TTTTCTTGTTATTTT
1 TTTTCTTGTTGTTTT
47411100 TTTCACTAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.06, C:0.12, G:0.08, T:0.74
Consensus pattern (18 bp):
TTTTCTTGTTGTTTTCTA
Found at i:47416834 original size:92 final size:95
Alignment explanation
Indices: 47416658--47416834 Score: 236
Period size: 92 Copynumber: 1.9 Consensus size: 95
47416648 TATATATTAG
* * *
47416658 ATTTCTAAATTAGTTTTAATAGTAGTATGTATAAATTAGTTCAATGTTTTATTATTTCAATTTAA
1 ATTTCTAAATTACTTTTAATAGTACTA-GTAT-AATTAATTCAATGTTTTATTATTTCAATTTAA
*
47416723 TATTATAGTGTTTTCTTTTATTTTTGTTCCAA
64 TATTATAGTGTTTTATTTTATTTTTGTTCCAA
*
47416755 ATTTCTATATTACTTTTAATAGTACTA-TAT-ATTAATTC-ATGTTTTATTAATTT-AATTTAAT
1 ATTTCTAAATTACTTTTAATAGTACTAGTATAATTAATTCAATGTTTTATT-ATTTCAATTTAAT
* *
47416816 ATTATATTTTTTTATTTTA
65 ATTATAGTGTTTTATTTTA
47416835 GCTCCAAATT
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
92 34 0.47
93 11 0.15
95 3 0.04
97 24 0.33
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (95 bp):
ATTTCTAAATTACTTTTAATAGTACTAGTATAATTAATTCAATGTTTTATTATTTCAATTTAATA
TTATAGTGTTTTATTTTATTTTTGTTCCAA
Found at i:47416880 original size:87 final size:89
Alignment explanation
Indices: 47416687--47416853 Score: 214
Period size: 87 Copynumber: 1.9 Consensus size: 89
47416677 TAGTAGTATG
* * * *
47416687 TATAAATTAGTTCAATGTTTTATTATTTCAATTTAATATTATAGTGTTTTCTTTTATTTTTGTTC
1 TATATATTAATTC-ATGTTTTATTATTTCAATTTAATATTATA--G-TTTCTTTTATTTTAGCTC
*
47416752 CAAATTTCTATATTACTTTTAATAGTAC
62 CAAATTTCTATAGTACTTTTAATAGTAC
47416780 TATATATTAATTCATGTTTTATTAATTT-AATTTAATATTATA-TTT-TTTTATTTTAGCTCCAA
1 TATATATTAATTCATGTTTTATT-ATTTCAATTTAATATTATAGTTTCTTTTATTTTAGCTCCAA
*
47416842 ATTTTTATAGTA
65 ATTTCTATAGTA
47416854 TATTTGCTTG
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
87 25 0.37
88 3 0.04
92 24 0.36
93 15 0.22
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (89 bp):
TATATATTAATTCATGTTTTATTATTTCAATTTAATATTATAGTTTCTTTTATTTTAGCTCCAAA
TTTCTATAGTACTTTTAATAGTAC
Found at i:47419294 original size:20 final size:20
Alignment explanation
Indices: 47419269--47419309 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
47419259 AATACGTCCT
47419269 AACACTTATAAAAGATATAA
1 AACACTTATAAAAGATATAA
*
47419289 AACACTTATAAAAGGTATAA
1 AACACTTATAAAAGATATAA
47419309 A
1 A
47419310 CTAGTTAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.59, C:0.10, G:0.07, T:0.24
Consensus pattern (20 bp):
AACACTTATAAAAGATATAA
Found at i:47419595 original size:21 final size:21
Alignment explanation
Indices: 47419569--47419624 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
47419559 AATAGCGGTG
*
47419569 GCGGTGAGATTAGTTACCGTA
1 GCGGTGAGATTAGATACCGTA
* *
47419590 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACCGTA
**
47419611 GCAATGAGATTAGA
1 GCGGTGAGATTAGA
47419625 AACAACGATG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.29, C:0.11, G:0.34, T:0.27
Consensus pattern (21 bp):
GCGGTGAGATTAGATACCGTA
Found at i:47420030 original size:14 final size:14
Alignment explanation
Indices: 47420011--47420052 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
47420001 GTTTGCCAGT
47420011 AAAATGTTTTCTGG
1 AAAATGTTTTCTGG
*
47420025 AAAATGATTTACT-G
1 AAAATG-TTTTCTGG
*
47420039 AAAATATTTTCTGG
1 AAAATGTTTTCTGG
47420053 TATTTGTATG
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
13 5 0.22
14 13 0.57
15 5 0.22
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.40
Consensus pattern (14 bp):
AAAATGTTTTCTGG
Found at i:47423959 original size:6 final size:6
Alignment explanation
Indices: 47423948--47423991 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
47423938 TTTGCAACCC
**
47423948 AAGGGG AAGGGG AAATGG AAGGGG AAGGGG AAGGGG AAAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG -AAGGGG A
47423992 GAAAAGGGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.39, C:0.00, G:0.59, T:0.02
Consensus pattern (6 bp):
AAGGGG
Found at i:47424887 original size:17 final size:17
Alignment explanation
Indices: 47424867--47424900 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
47424857 TCATTTTAGA
47424867 GAATATAAAACATATTC
1 GAATATAAAACATATTC
47424884 GAATATAAAACATATTC
1 GAATATAAAACATATTC
47424901 CTTACATGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.29
Consensus pattern (17 bp):
GAATATAAAACATATTC
Found at i:47427777 original size:13 final size:14
Alignment explanation
Indices: 47427749--47427780 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
47427739 AGTCAAAGAA
47427749 GACAAAAAACACTT
1 GACAAAAAACACTT
47427763 GACAAAAAACA-TT
1 GACAAAAAACACTT
47427776 GACAA
1 GACAA
47427781 GTGTTACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.59, C:0.19, G:0.09, T:0.12
Consensus pattern (14 bp):
GACAAAAAACACTT
Found at i:47428470 original size:80 final size:81
Alignment explanation
Indices: 47428375--47428527 Score: 254
Period size: 81 Copynumber: 1.9 Consensus size: 81
47428365 CATTGTTTCT
*
47428375 TTGTAAAAAATTTTCCTTTACATCTCTATCT-TTTTTGTAATAAAATCTATTGTCTTCCGCATAT
1 TTGTAAAAAATTTTCCTTTACATCTCTATCTATTTTTATAATAAAATCTATTGTCTTCCGCATAT
47428439 CCTTATCTCCTAGTAA
66 CCTTATCTCCTAGTAA
* * * *
47428455 TTGTAAAAATTTTTCCTTTACTTCTCTATCTATTTTTATAATAAAATCTATTGTCTTTCGCATCT
1 TTGTAAAAAATTTTCCTTTACATCTCTATCTATTTTTATAATAAAATCTATTGTCTTCCGCATAT
47428520 CCTTATCT
66 CCTTATCT
47428528 TTGTGTAATT
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 29 0.43
81 38 0.57
ACGTcount: A:0.26, C:0.20, G:0.05, T:0.49
Consensus pattern (81 bp):
TTGTAAAAAATTTTCCTTTACATCTCTATCTATTTTTATAATAAAATCTATTGTCTTCCGCATAT
CCTTATCTCCTAGTAA
Found at i:47431373 original size:20 final size:23
Alignment explanation
Indices: 47431343--47431383 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
47431333 ATTAAAATGA
47431343 TAAAAATTTG-ATTTA-ATAATT
1 TAAAAATTTGAATTTATATAATT
47431364 TAAAAA-TTGAATTTATATAA
1 TAAAAATTTGAATTTATATAA
47431384 ACTATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.17
21 11 0.61
22 4 0.22
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (23 bp):
TAAAAATTTGAATTTATATAATT
Found at i:47434866 original size:24 final size:24
Alignment explanation
Indices: 47434833--47434880 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
47434823 GATCACGAAC
*
47434833 AAGCTCGTTTATTGGCTCGTTTAT
1 AAGCTCGTTTATTGACTCGTTTAT
* *
47434857 AAGCTTGTTTATTGACTTGTTTAT
1 AAGCTCGTTTATTGACTCGTTTAT
47434881 TTATTAATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.12, G:0.19, T:0.50
Consensus pattern (24 bp):
AAGCTCGTTTATTGACTCGTTTAT
Found at i:47435102 original size:12 final size:12
Alignment explanation
Indices: 47435087--47435128 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
47435077 ATATGTTCAT
*
47435087 ATGTTCATGAAC
1 ATGTTCGTGAAC
**
47435099 ATGTTCGTTTA-
1 ATGTTCGTGAAC
47435110 ATGTTCGTGAAC
1 ATGTTCGTGAAC
47435122 ATGTTCG
1 ATGTTCG
47435129 ATTAAGTTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.40
Consensus pattern (12 bp):
ATGTTCGTGAAC
Found at i:47435115 original size:23 final size:23
Alignment explanation
Indices: 47435087--47435150 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
47435077 ATATGTTCAT
*
47435087 ATGTTCATGAACATGTTCGTTTA
1 ATGTTCATGAACATGTTCGATTA
*
47435110 ATGTTCGTGAACATGTTCGATTA
1 ATGTTCATGAACATGTTCGATTA
*
47435133 A-GTTAAATGAACATGTTC
1 ATGTT-CATGAACATGTTC
47435151 TTGAACATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
22 3 0.08
23 33 0.92
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (23 bp):
ATGTTCATGAACATGTTCGATTA
Found at i:47437349 original size:17 final size:18
Alignment explanation
Indices: 47437317--47437350 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
47437307 AATAAATCAA
*
47437317 GAAATTTTTGGAAAATAT
1 GAAAATTTTGGAAAATAT
47437335 GAAAATTTT-GAAAATA
1 GAAAATTTTGGAAAATA
47437351 GGGGTCACAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (18 bp):
GAAAATTTTGGAAAATAT
Found at i:47438330 original size:39 final size:39
Alignment explanation
Indices: 47438287--47438362 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
47438277 GAGTGCTTAC
** *
47438287 AGGGGCATGAATGTGCTTTAAGGACACCAAAGTGCAAGA
1 AGGGGCACAAATGTGATTTAAGGACACCAAAGTGCAAGA
* *
47438326 AGGGGCACAAATGTGATTTAGGGGCACCAAAGTGCAA
1 AGGGGCACAAATGTGATTTAAGGACACCAAAGTGCAA
47438363 ATAAAGGCAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.17
Consensus pattern (39 bp):
AGGGGCACAAATGTGATTTAAGGACACCAAAGTGCAAGA
Found at i:47438372 original size:39 final size:39
Alignment explanation
Indices: 47438296--47438372 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 39
47438286 CAGGGGCATG
* **
47438296 AATGTGCTTTAAGGACACCAAAGTGCAAGAAGGGGCACA
1 AATGTGATTTAAGGACACCAAAGTGCAAGAAAAGGCACA
* *
47438335 AATGTGATTTAGGGGCACCAAAGTGCAA-ATAAAGGCAC
1 AATGTGATTTAAGGACACCAAAGTGCAAGA-AAAGGCAC
47438373 CAAAGTGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.03
39 31 0.97
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17
Consensus pattern (39 bp):
AATGTGATTTAAGGACACCAAAGTGCAAGAAAAGGCACA
Found at i:47449334 original size:22 final size:22
Alignment explanation
Indices: 47449292--47449334 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
47449282 ATGTTGTGAC
*
47449292 ACAGGCACTAGGGTGTCGCGAT
1 ACAGGCACTAGGGTATCGCGAT
* *
47449314 ACAGGCATTAGGGTATTGCGA
1 ACAGGCACTAGGGTATCGCGA
47449335 CATCGACCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.19, G:0.35, T:0.21
Consensus pattern (22 bp):
ACAGGCACTAGGGTATCGCGAT
Found at i:47458399 original size:26 final size:26
Alignment explanation
Indices: 47458356--47458417 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 26
47458346 AATTTTATCG
*
47458356 GGGGTAAAA-TAGTTAAAACTTTAAC-
1 GGGGTAAAATTAGTCAAAA-TTTAACT
*
47458381 GCGGGTAAAATTA-TCAAAATTTTACT
1 G-GGGTAAAATTAGTCAAAATTTAACT
47458407 GGGGTAAAATT
1 GGGGTAAAATT
47458418 GGGGTGAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 16 0.50
26 14 0.44
27 2 0.06
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (26 bp):
GGGGTAAAATTAGTCAAAATTTAACT
Found at i:47462403 original size:15 final size:15
Alignment explanation
Indices: 47462383--47462438 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
47462373 TAAACATGTT
47462383 TAATTAAATAATTTA
1 TAATTAAATAATTTA
* *
47462398 TAATTAATTAATTTT
1 TAATTAAATAATTTA
* * *
47462413 TAAATAAA-GATATA
1 TAATTAAATAATTTA
47462427 TATATTAAATAA
1 TA-ATTAAATAA
47462439 AAATAGGACA
Statistics
Matches: 30, Mismatches: 9, Indels: 3
0.71 0.21 0.07
Matches are distributed among these distances:
14 5 0.17
15 24 0.80
16 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (15 bp):
TAATTAAATAATTTA
Found at i:47462901 original size:24 final size:24
Alignment explanation
Indices: 47462874--47462922 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
47462864 TTGTGAAAAA
47462874 TGTTAATAAAGAATTCATATCCAT
1 TGTTAATAAAGAATTCATATCCAT
*
47462898 TGTTAATAAAGAATTCATATTCAT
1 TGTTAATAAAGAATTCATATCCAT
47462922 T
1 T
47462923 AAATGGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (24 bp):
TGTTAATAAAGAATTCATATCCAT
Found at i:47467351 original size:34 final size:34
Alignment explanation
Indices: 47467312--47467393 Score: 105
Period size: 34 Copynumber: 2.4 Consensus size: 34
47467302 CTGTACCGTG
* *
47467312 ATGGGCTAAGGCCCTAATGCT-TACTGATACTGGA
1 ATGGGCTTAGGCCCTAAT-CTATACTGATACTGAA
47467346 ATGGGCTTAGG-CCTAATCTGATACTGATACTGAA
1 ATGGGCTTAGGCCCTAATCT-ATACTGATACTGAA
*
47467380 AAGGGCTTAGGCCC
1 ATGGGCTTAGGCCC
47467394 AAACTGAGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
32 2 0.05
33 6 0.14
34 32 0.76
35 2 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (34 bp):
ATGGGCTTAGGCCCTAATCTATACTGATACTGAA
Found at i:47474905 original size:34 final size:34
Alignment explanation
Indices: 47474867--47474931 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
47474857 CCCTAATGCT
* * *
47474867 TACTGATACTGGAATGGGCTTAGGCCTAAACTGA
1 TACTGATACTGAAAAGGGCTTAGGCCCAAACTGA
47474901 TACTGATACTGAAAAGGGCTTAGGCCCAAAC
1 TACTGATACTGAAAAGGGCTTAGGCCCAAAC
47474932 CGAGATTATC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (34 bp):
TACTGATACTGAAAAGGGCTTAGGCCCAAACTGA
Found at i:47481171 original size:251 final size:251
Alignment explanation
Indices: 47480728--47481234 Score: 960
Period size: 251 Copynumber: 2.0 Consensus size: 251
47480718 AAAATTTGGA
*
47480728 AAAATAATTTTTTAATCATTTAAAATCCCCCAAATTCCAGATCTATAAATTTTGGTTTTTAATTG
1 AAAATAATTTTTAAATCATTTAAAATCCCCCAAATTCCAGATCTATAAATTTTGGTTTTTAATTG
*
47480793 ACAAAATTAATCAAGAAATTGAAGAGAAAAGAGACCTTACACAAGCTAGTCGAGAGAAATGACAA
66 ACAAAATTAATCAAGAAATTGAAGAGAAAAGAGACCTTACACAAGCTAGTCGAGAGAAACGACAA
47480858 TGTCACTTTCTTGGCAATGTTTGAGATCGATCTTGGAGTTCAAGATTTCAGATTTGGGGCTGATT
131 TGTCACTTTCTTGGCAATGTTTGAGATCGATCTTGGAGTTCAAGATTTCAGATTTGGGGCTGATT
*
47480923 TAATTGAGGAAAAATTAAAGCAATATGGTGCGGAATATGTTAACAAATCTTGTTAC
196 TAATTGAGGAAAAATTAAAGCAATATGGTGCGGAATATGTTAACAAATCTTGTGAC
*
47480979 AAAATAATTTTTAAATCGTTTAAAATCCCCCAAATTCCAGATCTATAAATTTTGGTTTTTAATTG
1 AAAATAATTTTTAAATCATTTAAAATCCCCCAAATTCCAGATCTATAAATTTTGGTTTTTAATTG
47481044 ACAAAATTAATCAAGAAATTGAAGAGAAAAGAGACCTTACACAAGCTAGTCGAGAGAAACGACAA
66 ACAAAATTAATCAAGAAATTGAAGAGAAAAGAGACCTTACACAAGCTAGTCGAGAGAAACGACAA
*
47481109 TGTCACTTTCTTGGCAATGTTTGAGATTGATCTTGGAGTTCAAGATTTCAGATTTGGGGCTGATT
131 TGTCACTTTCTTGGCAATGTTTGAGATCGATCTTGGAGTTCAAGATTTCAGATTTGGGGCTGATT
*
47481174 TAATTGAGGAAAAATTAAAGCAATATGGTGGGGAATATGTTAACAAATCTTGTGAC
196 TAATTGAGGAAAAATTAAAGCAATATGGTGCGGAATATGTTAACAAATCTTGTGAC
47481230 AAAAT
1 AAAAT
47481235 GAAAAAAAGA
Statistics
Matches: 250, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
251 250 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (251 bp):
AAAATAATTTTTAAATCATTTAAAATCCCCCAAATTCCAGATCTATAAATTTTGGTTTTTAATTG
ACAAAATTAATCAAGAAATTGAAGAGAAAAGAGACCTTACACAAGCTAGTCGAGAGAAACGACAA
TGTCACTTTCTTGGCAATGTTTGAGATCGATCTTGGAGTTCAAGATTTCAGATTTGGGGCTGATT
TAATTGAGGAAAAATTAAAGCAATATGGTGCGGAATATGTTAACAAATCTTGTGAC
Found at i:47482749 original size:13 final size:13
Alignment explanation
Indices: 47482686--47482749 Score: 101
Period size: 13 Copynumber: 4.9 Consensus size: 13
47482676 AGTTCTTCAT
*
47482686 TGCTTTTGAAAAG
1 TGCTTTTGAGAAG
47482699 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
47482712 TGCTTTTAAGAAG
1 TGCTTTTGAGAAG
*
47482725 TGCTTTTCAGAAG
1 TGCTTTTGAGAAG
47482738 TGCTTTTGAGAA
1 TGCTTTTGAGAA
47482750 ATTTGAGTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 47 1.00
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:47489995 original size:11 final size:11
Alignment explanation
Indices: 47489917--47489997 Score: 56
Period size: 11 Copynumber: 7.3 Consensus size: 11
47489907 AGGTCGCCAC
* *
47489917 CAAACTACCGT
1 CAAACCACCAT
47489928 CAAACCACCAT
1 CAAACCACCAT
* **
47489939 CACTAGCCACCGC
1 CA--AACCACCAT
47489952 CAAACCACCAT
1 CAAACCACCAT
* *
47489963 TAAACCACCTT
1 CAAACCACCAT
* *
47489974 C-GATCACCAT
1 CAAACCACCAT
47489984 CAAACCACCAT
1 CAAACCACCAT
47489995 CAA
1 CAA
47489998 CTGCCAATAG
Statistics
Matches: 51, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
10 7 0.14
11 36 0.71
13 8 0.16
ACGTcount: A:0.38, C:0.43, G:0.05, T:0.14
Consensus pattern (11 bp):
CAAACCACCAT
Found at i:47491883 original size:27 final size:27
Alignment explanation
Indices: 47491855--47492181 Score: 374
Period size: 27 Copynumber: 12.1 Consensus size: 27
47491845 TATAACAGTT
* * * *
47491855 ATTTTACCCTATGGGGGTAATTCGATT
1 ATTTTACCTTGTGGGGGTAATTCGGTC
* *
47491882 ATTTTACCTTATAGGGGTAATTCGGTC
1 ATTTTACCTTGTGGGGGTAATTCGGTC
* **
47491909 ATTTTACCCTGTGGGGGTAATTTAGTC
1 ATTTTACCTTGTGGGGGTAATTCGGTC
*
47491936 ATTTTACCTTGTGGGGGTAATTCAGTC
1 ATTTTACCTTGTGGGGGTAATTCGGTC
* *
47491963 ATTTTACCTTATGGGGATAATTCGGTC
1 ATTTTACCTTGTGGGGGTAATTCGGTC
* * * *
47491990 ATTTTACCCTCTGGGGGTAATTCAGTT
1 ATTTTACCTTGTGGGGGTAATTCGGTC
* *
47492017 ACTTTT-CCTTCTAGGGGTAATTCGGTC
1 A-TTTTACCTTGTGGGGGTAATTCGGTC
47492044 ATTTTACCTTGTGGGGGTAATTCGGTC
1 ATTTTACCTTGTGGGGGTAATTCGGTC
*
47492071 ATTTTACAC-TGTAGGGGTAATTCGGTC
1 ATTTTAC-CTTGTGGGGGTAATTCGGTC
* *
47492098 TTTTTACCTTGTGGGGGTAATTCAGTC
1 ATTTTACCTTGTGGGGGTAATTCGGTC
* * *
47492125 ATTTTATCTTGTGAGGGTAATTCGGTG
1 ATTTTACCTTGTGGGGGTAATTCGGTC
*
47492152 ATTTTATCC-TGT-GGGGTAATTTGGTC
1 ATTTTA-CCTTGTGGGGGTAATTCGGTC
47492178 ATTT
1 ATTT
47492182 ATTTACCTCT
Statistics
Matches: 257, Mismatches: 38, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
26 20 0.08
27 231 0.90
28 6 0.02
ACGTcount: A:0.19, C:0.15, G:0.25, T:0.42
Consensus pattern (27 bp):
ATTTTACCTTGTGGGGGTAATTCGGTC
Found at i:47505834 original size:22 final size:23
Alignment explanation
Indices: 47505798--47505841 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
47505788 TCTATCTAAA
*
47505798 ATTATCAAAATTAATCAAAATTT
1 ATTATCAAAACTAATCAAAATTT
*
47505821 ATTAT-AAAACTAATTAAAATT
1 ATTATCAAAACTAATCAAAATT
47505842 CAACATGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.39
Consensus pattern (23 bp):
ATTATCAAAACTAATCAAAATTT
Found at i:47511548 original size:29 final size:28
Alignment explanation
Indices: 47511501--47511735 Score: 154
Period size: 29 Copynumber: 8.2 Consensus size: 28
47511491 AAAGGAAGCA
* * * **
47511501 TTGTGGCGATCTATATTAACAGGATGTTT
1 TTGTGGCTATCTCTGTTAA-AGGATGCCT
*
47511530 TTGTGGCTATCTCTGTTAAAAAGATGCCT
1 TTGTGGCTATCTCTGTT-AAAGGATGCCT
* ** * * * * **
47511559 TTGTAGAGATCTTTGTTTATGAAT-TAT
1 TTGTGGCTATCTCTGTTAAAGGATGCCT
* *
47511586 TGGTGGCTATCCCTGTTAGAAGGATGCCT
1 TTGTGGCTATCTCTGTTA-AAGGATGCCT
* *
47511615 TTATGGCTATCTCTGTTAAAATGATGCCT
1 TTGTGGCTATCTCTGTT-AAAGGATGCCT
*
47511644 TTGTGACTATCTCTGTTAAAAGGATGCCT
1 TTGTGGCTATCTCTGTT-AAAGGATGCCT
* *
47511673 TAGTGGCCATCTCTGTTAAAGGAATGCCT
1 TTGTGGCTATCTCTGTTAAAGG-ATGCCT
*
47511702 TCT-T-GCAAAT-TCTGTTAAAGGATGCCT
1 T-TGTGGC-TATCTCTGTTAAAGGATGCCT
*
47511729 TCGTGGC
1 TTGTGGC
47511736 AGAAATTGAA
Statistics
Matches: 157, Mismatches: 40, Indels: 19
0.73 0.19 0.09
Matches are distributed among these distances:
27 20 0.13
28 27 0.17
29 107 0.68
30 3 0.02
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (28 bp):
TTGTGGCTATCTCTGTTAAAGGATGCCT
Found at i:47514183 original size:23 final size:26
Alignment explanation
Indices: 47514155--47514201 Score: 73
Period size: 23 Copynumber: 1.9 Consensus size: 26
47514145 GAGTTGAAAC
47514155 ATGATATA-TGA-ATTGAT-GAATTG
1 ATGATATATTGAGATTGATAGAATTG
47514178 ATGATATATTGAGATTGATAGAAT
1 ATGATATATTGAGATTGATAGAAT
47514202 GTGAATTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.38
24 3 0.14
25 6 0.29
26 4 0.19
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (26 bp):
ATGATATATTGAGATTGATAGAATTG
Found at i:47520669 original size:18 final size:20
Alignment explanation
Indices: 47520632--47520670 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
47520622 GCAGGACCTG
47520632 TATACTGTATAATCTGTTAC
1 TATACTGTATAATCTGTTAC
*
47520652 TATACTG-ATTAT-TGTTAC
1 TATACTGTATAATCTGTTAC
47520670 T
1 T
47520671 GTAATGGGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 4 0.22
20 7 0.39
ACGTcount: A:0.28, C:0.13, G:0.10, T:0.49
Consensus pattern (20 bp):
TATACTGTATAATCTGTTAC
Found at i:47522851 original size:33 final size:33
Alignment explanation
Indices: 47522804--47522878 Score: 105
Period size: 33 Copynumber: 2.3 Consensus size: 33
47522794 TATTTATTTT
* * *
47522804 ATAACATATTTAAATAATTTAATATAACGATAC
1 ATAAAATATTTAAATAATTTAATAGAACAATAC
* *
47522837 ATAAAATATTTAAATAATTTAATAGAATAATAT
1 ATAAAATATTTAAATAATTTAATAGAACAATAC
47522870 ATAAAATAT
1 ATAAAATAT
47522879 AAATTAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.37
Consensus pattern (33 bp):
ATAAAATATTTAAATAATTTAATAGAACAATAC
Found at i:47523696 original size:12 final size:12
Alignment explanation
Indices: 47523675--47523708 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
47523665 TATATATTTT
*
47523675 AAAATTATATAA
1 AAAATAATATAA
47523687 AAAATAATATAA
1 AAAATAATATAA
*
47523699 AAATTAATAT
1 AAAATAATAT
47523709 GGGCAGGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:47535784 original size:16 final size:16
Alignment explanation
Indices: 47535763--47535794 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
47535753 GATATATGAG
47535763 TTTTAAAATAAACCAA
1 TTTTAAAATAAACCAA
47535779 TTTTAAAATAAACCAA
1 TTTTAAAATAAACCAA
47535795 GATGAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (16 bp):
TTTTAAAATAAACCAA
Found at i:47536208 original size:40 final size:41
Alignment explanation
Indices: 47536152--47536279 Score: 156
Period size: 45 Copynumber: 3.1 Consensus size: 41
47536142 TTTGATGATA
* *
47536152 TTTTTTTGT-CCT-GATGTGGTTGCTTTCACA-TTGCTTCC
1 TTTTTTTGTACATAGATGTGGTTGCTTCCACAGTTGCTTCC
47536190 TTTTTTTGTACATAGATGTGGTTGCTTCCACATGTTGCTT-C
1 TTTTTTTGTACATAGATGTGGTTGCTTCCACA-GTTGCTTCC
47536231 TTTTTTTGTCTGGACATAGATGTGGTTGCTTCCACACGTTGCTTCC
1 TTTTTTTG--T--ACATAGATGTGGTTGCTTCCACA-GTTGCTTCC
47536277 TTT
1 TTT
47536280 GTCTTTTCTT
Statistics
Matches: 78, Mismatches: 3, Indels: 10
0.86 0.03 0.11
Matches are distributed among these distances:
38 9 0.12
39 2 0.03
40 17 0.22
41 9 0.12
42 6 0.08
43 1 0.01
45 30 0.38
46 4 0.05
ACGTcount: A:0.12, C:0.20, G:0.20, T:0.49
Consensus pattern (41 bp):
TTTTTTTGTACATAGATGTGGTTGCTTCCACAGTTGCTTCC
Found at i:47540453 original size:49 final size:51
Alignment explanation
Indices: 47540275--47540483 Score: 171
Period size: 50 Copynumber: 4.2 Consensus size: 51
47540265 TAGGATGGAG
* * * * * * *
47540275 TGAAGCTACAGTAGCAAAACTTATATCCCTTAAG-ACGCAGTGGAGCAAGA
1 TGAAGCTACAGTAGCAAATCTCATCTCCCTAAAGTATGTAGTGGAACAAGA
* *
47540325 TGAAGTTACAGTAGCAAATCTCATCTCCCTGAA-TATGTAGTGGAACAAGA
1 TGAAGCTACAGTAGCAAATCTCATCTCCCTAAAGTATGTAGTGGAACAAGA
** * * * **
47540375 TGAAGCTACAACAGCGACTC-CTATATCCCTAAAGT-TGTA-TGGAATGGAGA
1 TGAAGCTACAGTAGCAAATCTC-ATCTCCCTAAAGTATGTAGTGGAA-CAAGA
* * *
47540425 -GAAGCTACAGTAGCAAATCTCATCTCCCTAAAG-ATGCAGTAGAGCAAGA
1 TGAAGCTACAGTAGCAAATCTCATCTCCCTAAAGTATGTAGTGGAACAAGA
*
47540474 TAAAGCTACA
1 TGAAGCTACA
47540484 ACATCAAATC
Statistics
Matches: 123, Mismatches: 28, Indels: 16
0.74 0.17 0.10
Matches are distributed among these distances:
49 38 0.31
50 84 0.68
51 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (51 bp):
TGAAGCTACAGTAGCAAATCTCATCTCCCTAAAGTATGTAGTGGAACAAGA
Found at i:47541778 original size:29 final size:27
Alignment explanation
Indices: 47541734--47541788 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 27
47541724 CCTTAGGGGA
47541734 GAGAAAAAGAGAGAAATGACATTTTTTTT
1 GAGAAAAAGAGAGAAATG--ATTTTTTTT
* *
47541763 GAGAAAATGAGTGAAATGATTTTTTT
1 GAGAAAAAGAGAGAAATGATTTTTTT
47541789 AAAACCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 8 0.33
29 16 0.67
ACGTcount: A:0.42, C:0.02, G:0.22, T:0.35
Consensus pattern (27 bp):
GAGAAAAAGAGAGAAATGATTTTTTTT
Found at i:47546519 original size:9 final size:9
Alignment explanation
Indices: 47546505--47546535 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
47546495 GTTAAACGAA
47546505 TCGAGTTAT
1 TCGAGTTAT
*
47546514 TCGAGTTAA
1 TCGAGTTAT
47546523 TCGAGTTAT
1 TCGAGTTAT
47546532 TCGA
1 TCGA
47546536 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:47546606 original size:9 final size:9
Alignment explanation
Indices: 47546589--47546625 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
47546579 TGAGTTTTCA
47546589 AATTCGAAT
1 AATTCGAAT
*
47546598 AACTCGAAT
1 AATTCGAAT
47546607 AATTCGAAT
1 AATTCGAAT
47546616 AATTCGAAT
1 AATTCGAAT
47546625 A
1 A
47546626 CCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:47546710 original size:29 final size:30
Alignment explanation
Indices: 47546677--47546733 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
47546667 CCTTTTTACT
*
47546677 TTTCCCT-CAAAACTTTTACTCCTTCCCAC
1 TTTCCCTCCAAAACTTTTACTCCCTCCCAC
*
47546706 TTTCCCTCCAAAACTTTTATTCCCTCCC
1 TTTCCCTCCAAAACTTTTACTCCCTCCC
47546734 CTCCCAACCC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.19, C:0.42, G:0.00, T:0.39
Consensus pattern (30 bp):
TTTCCCTCCAAAACTTTTACTCCCTCCCAC
Found at i:47547646 original size:5 final size:5
Alignment explanation
Indices: 47547636--47547661 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
47547626 CTCAAAAATT
47547636 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
47547662 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:47551253 original size:21 final size:21
Alignment explanation
Indices: 47551229--47551268 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
47551219 AAAAATGAAA
*
47551229 TAAAAATAAGTAAAACAAAAT
1 TAAAAATAAATAAAACAAAAT
**
47551250 TAAAGCTAAATAAAACAAA
1 TAAAAATAAATAAAACAAA
47551269 TAAATGAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.70, C:0.07, G:0.05, T:0.17
Consensus pattern (21 bp):
TAAAAATAAATAAAACAAAAT
Found at i:47552424 original size:25 final size:25
Alignment explanation
Indices: 47552374--47552443 Score: 95
Period size: 25 Copynumber: 2.7 Consensus size: 25
47552364 AAAAATAAAA
*
47552374 ATTTACCAAAATATTATAACTTTTTTTT
1 ATTTACCAAAATA-TAT-A-TATTTTTT
*
47552402 ATTTATCAAAATATATATATTTTTT
1 ATTTACCAAAATATATATATTTTTT
47552427 ATTTACCAAAATATATA
1 ATTTACCAAAATATATA
47552444 AAAAAATAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
25 23 0.59
26 1 0.03
27 3 0.08
28 12 0.31
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (25 bp):
ATTTACCAAAATATATATATTTTTT
Found at i:47552521 original size:19 final size:20
Alignment explanation
Indices: 47552490--47552557 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 20
47552480 TGTGACGGGA
47552490 AAAGAGAAG-AGAAAAAAAG
1 AAAGAGAAGAAGAAAAAAAG
*
47552509 AAAGAAAGAAGAAGAAGAAAAGG
1 AAAG--AGAAGAAGAA-AAAAAG
* *
47552532 AAAAGAGAAGAAGAAAGAAGG
1 -AAAGAGAAGAAGAAAAAAAG
47552553 AAAGA
1 AAAGA
47552558 AAAGGAAAGG
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
19 4 0.10
20 5 0.12
21 10 0.24
22 14 0.33
23 5 0.12
24 4 0.10
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (20 bp):
AAAGAGAAGAAGAAAAAAAG
Found at i:47552540 original size:26 final size:25
Alignment explanation
Indices: 47552490--47552584 Score: 87
Period size: 25 Copynumber: 4.0 Consensus size: 25
47552480 TGTGACGGGA
*
47552490 AAAG-AGAAG-AGAAAA-AAAGAAAG
1 AAAGAAGAAGAAGAAAAGAAA-AGAG
47552513 AAAGAAGAAGAAGAAAAGGAAAAGAG
1 AAAGAAGAAGAAGAAAA-GAAAAGAG
*
47552539 -AAGAAGAAAGAAGGAAAGAAAAG-G
1 AAAGAAG-AAGAAGAAAAGAAAAGAG
*
47552563 AAAGGAGAAG-AGAAAA-AAAAGA
1 AAAGAAGAAGAAGAAAAGAAAAGA
47552585 AGAGGGAAGG
Statistics
Matches: 61, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
22 5 0.08
23 9 0.15
24 9 0.15
25 23 0.38
26 12 0.20
27 3 0.05
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (25 bp):
AAAGAAGAAGAAGAAAAGAAAAGAG
Found at i:47552558 original size:31 final size:32
Alignment explanation
Indices: 47552510--47552587 Score: 108
Period size: 31 Copynumber: 2.5 Consensus size: 32
47552500 GAAAAAAAGA
47552510 AAGAAAGAAGAAGAAGAAAAGGAAAAGAGAAG
1 AAGAAAGAAGAAGAAGAAAAGGAAAAGAGAAG
* *
47552542 AAGAAAGAAGGA-AAGAAAAGGAAAGGAGAAG
1 AAGAAAGAAGAAGAAGAAAAGGAAAAGAGAAG
*
47552573 -AGAAA-AAAAAGAAGA
1 AAGAAAGAAGAAGAAGA
47552588 GGGAAGGAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
29 3 0.07
30 9 0.22
31 18 0.44
32 11 0.27
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (32 bp):
AAGAAAGAAGAAGAAGAAAAGGAAAAGAGAAG
Found at i:47552571 original size:21 final size:22
Alignment explanation
Indices: 47552508--47552608 Score: 77
Period size: 21 Copynumber: 4.7 Consensus size: 22
47552498 GAGAAAAAAA
* *
47552508 GAAAGAAAGAAGAAGAAGAAAAG
1 GAAAGAAA-AAGAAGAGGAGAAG
* *
47552531 GAAA-AGAGAAGAAGA-AAGAAG
1 GAAAGA-AAAAGAAGAGGAGAAG
*
47552552 GAAAGAAAAGGAA-AGGAGAAG
1 GAAAGAAAAAGAAGAGGAGAAG
47552573 AGAAA-AAAAAGAAGAGG-GAAG
1 -GAAAGAAAAAGAAGAGGAGAAG
* *
47552594 GAAGGAAAAAAAAGA
1 GAAAGAAAAAGAAGA
47552609 AAAAAAAGGT
Statistics
Matches: 63, Mismatches: 9, Indels: 14
0.73 0.10 0.16
Matches are distributed among these distances:
20 4 0.06
21 38 0.60
22 16 0.25
23 5 0.08
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (22 bp):
GAAAGAAAAAGAAGAGGAGAAG
Found at i:47552594 original size:27 final size:24
Alignment explanation
Indices: 47552553--47552611 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 24
47552543 AGAAAGAAGG
47552553 AAAGAAAAGGAAAGGAGAAGAGAAAAA
1 AAAGAAAAGGAAA-G-GAAG-GAAAAA
* *
47552580 AAAGAAGAGGGAAGGAAGGAAAAA
1 AAAGAAAAGGAAAGGAAGGAAAAA
47552604 AAAGAAAA
1 AAAGAAAA
47552612 AAAAGGTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 13 0.45
25 4 0.14
26 1 0.03
27 11 0.38
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (24 bp):
AAAGAAAAGGAAAGGAAGGAAAAA
Found at i:47552599 original size:36 final size:37
Alignment explanation
Indices: 47552487--47552616 Score: 103
Period size: 36 Copynumber: 3.6 Consensus size: 37
47552477 CGATGTGACG
* **
47552487 GGAAAAGAGAAGAG-AAAAAAAGAAAGAAAGAAGAAGAA
1 GGAAAGGAGAAGAGAAAAAAAAG-AAGAGGGAAG-AGAA
* * * * *
47552525 GAAAAGGAAAAGAGAAGAAGAAAG-A-AGGAAAGAAAA
1 GGAAAGGAGAAGAGAA-AAAAAAGAAGAGGGAAGAGAA
47552561 GGAAAGGAGAAGAGAAAAAAAAGAAGAGGGAAG-GAA
1 GGAAAGGAGAAGAGAAAAAAAAGAAGAGGGAAGAGAA
*
47552597 GGAAA--A-AAAAGAAAAAAAAG
1 GGAAAGGAGAAGAGAAAAAAAAG
47552617 GTAATTTTAT
Statistics
Matches: 74, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
33 13 0.18
34 1 0.01
35 6 0.08
36 25 0.34
37 10 0.14
38 12 0.16
39 1 0.01
40 6 0.08
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (37 bp):
GGAAAGGAGAAGAGAAAAAAAAGAAGAGGGAAGAGAA
Found at i:47553169 original size:16 final size:15
Alignment explanation
Indices: 47553143--47553172 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
47553133 GTACTGAGAT
47553143 AATATAAAATAATAA
1 AATATAAAATAATAA
47553158 AATATGAAAATAATA
1 AATAT-AAAATAATA
47553173 TAGTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AATATAAAATAATAA
Found at i:47556064 original size:12 final size:11
Alignment explanation
Indices: 47556011--47556069 Score: 50
Period size: 12 Copynumber: 5.3 Consensus size: 11
47556001 AATTTTAAAA
*
47556011 TTTTTAAAATT
1 TTTTTATAATT
*
47556022 TCTTTATAAATGT
1 TTTTTAT-AAT-T
*
47556035 TGTTTATAA--
1 TTTTTATAATT
47556044 TTTTTATAATT
1 TTTTTATAATT
47556055 TTTTTAATAATT
1 TTTTT-ATAATT
47556067 TTT
1 TTT
47556070 AAAATTTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
9 8 0.21
11 10 0.26
12 14 0.36
13 7 0.18
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (11 bp):
TTTTTATAATT
Found at i:47562339 original size:2 final size:2
Alignment explanation
Indices: 47562334--47562358 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
47562324 TAATTATTTT
47562334 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
47562359 TAAAAAACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:47565864 original size:25 final size:25
Alignment explanation
Indices: 47565835--47565890 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
47565825 TATATTTAAT
47565835 ATATATATTTGATTAAAAATAAAAA
1 ATATATATTTGATTAAAAATAAAAA
*
47565860 ATATATATTTGATTAAAAATAAAAT
1 ATATATATTTGATTAAAAATAAAAA
47565885 ATATAT
1 ATATAT
47565891 TTAATATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (25 bp):
ATATATATTTGATTAAAAATAAAAA
Found at i:47566355 original size:82 final size:84
Alignment explanation
Indices: 47566214--47566387 Score: 316
Period size: 82 Copynumber: 2.1 Consensus size: 84
47566204 AAAATATGAA
47566214 TATATATATATTCATATTTTTTTCCTCCTCCTCCTCTCCATTCCACATCCTTTATGTATATATTT
1 TATATATATATTCATA-TTTTTT-CTCCTCCTCCTCTCCATTCCACATCCTTTATGTATATATTT
47566279 GTTAGAATCTTTAACTTTTAG
64 GTTAGAATCTTTAACTTTTAG
47566300 TATATATATATTCATA-TTTTT-TCCTCCTCCTCTCCATTCCACATCCTTTATGTATATATTTGT
1 TATATATATATTCATATTTTTTCTCCTCCTCCTCTCCATTCCACATCCTTTATGTATATATTTGT
47566363 TAGAATCTTTAACTTTTAG
66 TAGAATCTTTAACTTTTAG
47566382 TATATA
1 TATATA
47566388 ACATGCTTAT
Statistics
Matches: 88, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
82 67 0.76
84 5 0.06
86 16 0.18
ACGTcount: A:0.25, C:0.21, G:0.05, T:0.50
Consensus pattern (84 bp):
TATATATATATTCATATTTTTTCTCCTCCTCCTCTCCATTCCACATCCTTTATGTATATATTTGT
TAGAATCTTTAACTTTTAG
Found at i:47567661 original size:11 final size:11
Alignment explanation
Indices: 47567645--47567687 Score: 61
Period size: 11 Copynumber: 3.8 Consensus size: 11
47567635 CCATTTTCTA
47567645 AATAAAATATT
1 AATAAAATATT
47567656 AAT-AAATATCT
1 AATAAAATAT-T
47567667 AAGTAAAATATT
1 AA-TAAAATATT
47567679 AATAAAATA
1 AATAAAATA
47567688 ATATTTAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 6 0.21
11 13 0.45
12 4 0.14
13 6 0.21
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (11 bp):
AATAAAATATT
Found at i:47567673 original size:23 final size:23
Alignment explanation
Indices: 47567641--47567684 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
47567631 ACTACCATTT
47567641 TCTAAATAAAATATTAATAAATA
1 TCTAAATAAAATATTAATAAATA
*
47567664 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATATTAATAAA
47567685 ATAATATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (23 bp):
TCTAAATAAAATATTAATAAATA
Found at i:47569648 original size:18 final size:17
Alignment explanation
Indices: 47569615--47569653 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
47569605 TTTTATAAAT
47569615 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
47569633 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
47569650 TGTG
1 TGTG
47569654 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:47569912 original size:23 final size:23
Alignment explanation
Indices: 47569882--47570000 Score: 145
Period size: 23 Copynumber: 5.2 Consensus size: 23
47569872 GTTATTGATC
47569882 AGTGGTAGCTTCGGCTACACT-TT
1 AGTGGTAGCTTCGGCTACA-TATT
47569905 AGTGGTAGCTAT-GGCTACATATT
1 AGTGGTAGCT-TCGGCTACATATT
47569928 AGTGGTAGCTTCGGCTACAT-TT
1 AGTGGTAGCTTCGGCTACATATT
* * *
47569950 CAGTGGTAGCTACGGCTACGTATC
1 -AGTGGTAGCTTCGGCTACATATT
* *
47569974 AGTGGTAGCTTTGGCTACATATC
1 AGTGGTAGCTTCGGCTACATATT
47569997 AGTG
1 AGTG
47570001 TGGCACTTAT
Statistics
Matches: 85, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
22 4 0.05
23 79 0.93
24 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (23 bp):
AGTGGTAGCTTCGGCTACATATT
Found at i:47569934 original size:46 final size:46
Alignment explanation
Indices: 47569879--47570000 Score: 183
Period size: 46 Copynumber: 2.7 Consensus size: 46
47569869 AGTGTTATTG
*
47569879 ATCAGTGGTAGCTTCGGCTACACTTT-AGTGGTAGCTATGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACA-TTTCAGTGGTAGCTACGGCTACAT
* *
47569925 ATTAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
* *
47569971 ATCAGTGGTAGCTTTGGCTACATATCAGTG
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTG
47570001 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
45 3 0.04
46 66 0.96
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
Found at i:47572554 original size:232 final size:233
Alignment explanation
Indices: 47572140--47572572 Score: 643
Period size: 232 Copynumber: 1.9 Consensus size: 233
47572130 GGATGTTACA
* * *
47572140 GAATGACTTCCATTAAAAGAGAAAAAAATCATTAAAAATTATAGAAATTCTAATGGTGAGAAAAG
1 GAATGACTTCCATTAAAAGAGAAAAAAAGCATTAAAAATTACAGAAACTCTAATGGTGAGAAAAG
* * *
47572205 TGAATCTAGAATGAGAGAAAGATAGAAGGAGAAAGAAATGATTGTTTTGATGGTTAATCTGAACA
66 TGAATCTAGAAT-AGAGAAAGATAAAAGGAGAAAGAAATGATTGTCTTGATGGTTAATCCGAACA
* ** *
47572270 GAGAAAGCCTTCAATTGTGGAGAGTTCACAACAACAGCAACAATTTTTTGCTATTTAGTTTATCT
130 AAGAAAGCCTTCAACAGTGGAGAGTTCACAACAACAGCAACAATTTTTTGCTATTTAATTTATCT
47572335 TCATCTCTTTTTTTTTTATATATATTTTTGAATTGTAAT
195 TCATCTCTTTTTTTTTTATATATATTTTTGAATTGTAAT
* * * * *
47572374 GAATGTCTTCCATTAAAAGGGAAAAAAAGCATTGAAAATTACAGAAGCTCTAATGGTGAGAAAGG
1 GAATGACTTCCATTAAAAGAGAAAAAAAGCATTAAAAATTACAGAAACTCTAATGGTGAGAAAAG
*
47572439 TGAATCTAGAAT-GAGAAAGATAAAAGGAGAAAGAAATGATTGTCTTGGTGGTTAATCCGAACAA
66 TGAATCTAGAATAGAGAAAGATAAAAGGAGAAAGAAATGATTGTCTTGATGGTTAATCCGAACAA
** * * * * *
47572503 AGAAAGCCTTTGACAGTGGAGAGTTCACAATAGCGGCGACGATTTTTTGCTATTTAATTTATCTT
131 AGAAAGCCTTCAACAGTGGAGAGTTCACAACAACAGCAACAATTTTTTGCTATTTAATTTATCTT
47572568 CATCT
196 CATCT
47572573 TTTAAAAAAA
Statistics
Matches: 176, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
232 107 0.61
234 69 0.39
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.31
Consensus pattern (233 bp):
GAATGACTTCCATTAAAAGAGAAAAAAAGCATTAAAAATTACAGAAACTCTAATGGTGAGAAAAG
TGAATCTAGAATAGAGAAAGATAAAAGGAGAAAGAAATGATTGTCTTGATGGTTAATCCGAACAA
AGAAAGCCTTCAACAGTGGAGAGTTCACAACAACAGCAACAATTTTTTGCTATTTAATTTATCTT
CATCTCTTTTTTTTTTATATATATTTTTGAATTGTAAT
Found at i:47575316 original size:30 final size:30
Alignment explanation
Indices: 47575282--47575351 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
47575272 GAAAAAATTT
47575282 GGTTAACCGACCGATTAACCGAATTCGGTC
1 GGTTAACCGACCGATTAACCGAATTCGGTC
*
47575312 GGTTAACCAACCGATTAACCGAATTCGGTC
1 GGTTAACCGACCGATTAACCGAATTCGGTC
47575342 GGTTAACCGA
1 GGTTAACCGA
47575352 ATTTTTTCGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (30 bp):
GGTTAACCGACCGATTAACCGAATTCGGTC
Found at i:47575362 original size:18 final size:18
Alignment explanation
Indices: 47575296--47575354 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
47575286 AACCGACCGA
47575296 TTAACCGAATTCGGTCGG
1 TTAACCGAATTCGGTCGG
*
47575314 TTAACC-AA--C---CGA
1 TTAACCGAATTCGGTCGG
47575326 TTAACCGAATTCGGTCGG
1 TTAACCGAATTCGGTCGG
47575344 TTAACCGAATT
1 TTAACCGAATT
47575355 TTTTCGGTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
12 8 0.24
13 2 0.06
15 2 0.06
17 2 0.06
18 19 0.58
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (18 bp):
TTAACCGAATTCGGTCGG
Found at i:47575544 original size:38 final size:39
Alignment explanation
Indices: 47575484--47575561 Score: 124
Period size: 38 Copynumber: 2.0 Consensus size: 39
47575474 ATCCAACCCA
*
47575484 ACCCAATTACCCAACCTAATAAAATTAAAACTAAAGTCT
1 ACCCAATTACCCAACCTAATAAAAATAAAACTAAAGTCT
47575523 ACCCAATTA-CCAA-CTCAATAAAAATAAAACTAAAGTCT
1 ACCCAATTACCCAACCT-AATAAAAATAAAACTAAAGTCT
47575561 A
1 A
47575562 ACTCTAAGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
37 2 0.05
38 26 0.70
39 9 0.24
ACGTcount: A:0.51, C:0.24, G:0.03, T:0.22
Consensus pattern (39 bp):
ACCCAATTACCCAACCTAATAAAAATAAAACTAAAGTCT
Found at i:47575712 original size:17 final size:17
Alignment explanation
Indices: 47575692--47575757 Score: 69
Period size: 17 Copynumber: 3.7 Consensus size: 17
47575682 TAATTTCAAG
47575692 AATTATGTAATGTTTTT
1 AATTATGTAATGTTTTT
* ***
47575709 AATTATGTAGTGATTCAA
1 AATTATGTAATG-TTTTT
47575727 AGACTTATGTAATGTTTTT
1 A-A-TTATGTAATGTTTTT
47575746 AATTATGTAATG
1 AATTATGTAATG
47575758 ATTTAATTCT
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
17 21 0.55
18 4 0.11
19 4 0.11
20 9 0.24
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.48
Consensus pattern (17 bp):
AATTATGTAATGTTTTT
Found at i:47575735 original size:37 final size:37
Alignment explanation
Indices: 47575689--47575760 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
47575679 TGTTAATTTC
*
47575689 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATGTTTTTAATTATGTAATGATTCA
*
47575726 AAGACTTATGTAATGTTTTTAATTATGTAATGATT
1 AAGAATTATGTAATGTTTTTAATTATGTAATGATT
47575761 TAATTCTGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (37 bp):
AAGAATTATGTAATGTTTTTAATTATGTAATGATTCA
Found at i:47576981 original size:15 final size:15
Alignment explanation
Indices: 47576958--47576991 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
47576948 CCCGTTTTTT
* *
47576958 TTAATGTGTTAGAAA
1 TTAACGTGTTACAAA
47576973 TTAACGTGTTACAAA
1 TTAACGTGTTACAAA
47576988 TTAA
1 TTAA
47576992 ATGTATATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (15 bp):
TTAACGTGTTACAAA
Found at i:47577045 original size:13 final size:13
Alignment explanation
Indices: 47577027--47577105 Score: 113
Period size: 13 Copynumber: 6.0 Consensus size: 13
47577017 AATTTAAAAG
*
47577027 TTAAAACATTATA
1 TTAAAACAATATA
47577040 TTAAAACAATATAA
1 TTAAAACAATAT-A
* *
47577054 TTACAACAGTATA
1 TTAAAACAATATA
*
47577067 TTATAACAATATA
1 TTAAAACAATATA
47577080 TTAAAACAATATA
1 TTAAAACAATATA
47577093 TTAAAACAATATA
1 TTAAAACAATATA
47577106 ACCGAACTCA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
13 48 0.81
14 11 0.19
ACGTcount: A:0.57, C:0.09, G:0.01, T:0.33
Consensus pattern (13 bp):
TTAAAACAATATA
Found at i:47577755 original size:3 final size:3
Alignment explanation
Indices: 47577747--47577772 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
47577737 TCCAAAGCCA
47577747 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
47577773 AATCAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:47583705 original size:38 final size:38
Alignment explanation
Indices: 47583652--47583830 Score: 216
Period size: 38 Copynumber: 4.7 Consensus size: 38
47583642 AATGTAATGT
* *
47583652 TATTAGGGCTCTATGCCTAGC-GTGCTTTGTGCCAGTGA
1 TATTCGGGCTCTATGCCTAGCAG-GCTTTGTGCCGGTGA
* * *
47583690 TATTCGGGCTTTATGCCTAGCAGACTTTGTGCTGGTGA
1 TATTCGGGCTCTATGCCTAGCAGGCTTTGTGCCGGTGA
* * * * *
47583728 TATTCGGGCTCTGTGTCTAGCAGGCTTTGTGTCGATTA
1 TATTCGGGCTCTATGCCTAGCAGGCTTTGTGCCGGTGA
* * *
47583766 TATTCGGGCTCTATGCTTAGCAAGCTTTGTACCGGTGA
1 TATTCGGGCTCTATGCCTAGCAGGCTTTGTGCCGGTGA
*
47583804 TATTTGGGCTCTATGCCTAGCAGGCTT
1 TATTCGGGCTCTATGCCTAGCAGGCTT
47583831 CATGTCGGTG
Statistics
Matches: 116, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
38 115 0.99
39 1 0.01
ACGTcount: A:0.16, C:0.20, G:0.28, T:0.36
Consensus pattern (38 bp):
TATTCGGGCTCTATGCCTAGCAGGCTTTGTGCCGGTGA
Found at i:47583863 original size:41 final size:41
Alignment explanation
Indices: 47583696--47583896 Score: 111
Period size: 38 Copynumber: 5.1 Consensus size: 41
47583686 GTGATATTCG
* * **
47583696 GGCTTTATGCCTAGCAGACTTTGTGCTGGTG-A-TAT-TCG
1 GGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATATTA
* * * *
47583734 GGCTCTGTGTCTAGCAGGCTTTGTG-T--CG-ATTATATTCG
1 GGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATATT-A
* * * * * * *
47583772 GGCTCTATGCTTAGCAAGCTTTGTACCGGTG-A-TAT-TTG
1 GGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATATTA
* *
47583810 GGCTCTATGCCTAGCAGGCTTCATGT-C-GGTGTATTATATTA
1 GGCTTTGTGCCTAGCAGGCTT--TGTGCTGGTGTATTATATTA
* * *
47583851 GGCTTTGTGCCTAGTAGGCTTTGTGCTGGTGTGTTATTTTA
1 GGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATATTA
47583892 GGCTT
1 GGCTT
47583897 CGAACCTGAC
Statistics
Matches: 129, Mismatches: 21, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
35 2 0.02
36 3 0.02
37 2 0.02
38 66 0.51
39 7 0.05
40 10 0.08
41 39 0.30
ACGTcount: A:0.15, C:0.17, G:0.28, T:0.39
Consensus pattern (41 bp):
GGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATATTA
Found at i:47590355 original size:62 final size:62
Alignment explanation
Indices: 47590284--47590496 Score: 302
Period size: 62 Copynumber: 3.5 Consensus size: 62
47590274 CTAAATCGCA
** *
47590284 AACAGTGAGTCACATAGCCTGGACACACACCCGTGTCTCTGGCCCGTGTGGTCTTTAATAGT
1 AACAGTGAGTCACATAGCCTGGACACACACCCGTGTCTCTGGCCCGTGCAGTCTTTAATAGC
* * * *
47590346 AACAATGAGTTACACAGCCTGGACACACACCCGTGTCTCTGGCCCGTACAGTCTTTAATAGC
1 AACAGTGAGTCACATAGCCTGGACACACACCCGTGTCTCTGGCCCGTGCAGTCTTTAATAGC
* * * *
47590408 AACAGTGTGTCACATGGCCTGGATACACACCCGTGTCTCTGGCCC-TGCAGTCTCTAATAGC
1 AACAGTGAGTCACATAGCCTGGACACACACCCGTGTCTCTGGCCCGTGCAGTCTTTAATAGC
* *
47590469 AACAGTGAGTCACATGGCCTAGACACAC
1 AACAGTGAGTCACATAGCCTGGACACAC
47590497 GCTCGTGCAG
Statistics
Matches: 133, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
61 39 0.29
62 94 0.71
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (62 bp):
AACAGTGAGTCACATAGCCTGGACACACACCCGTGTCTCTGGCCCGTGCAGTCTTTAATAGC
Found at i:47590587 original size:110 final size:109
Alignment explanation
Indices: 47590394--47590592 Score: 283
Period size: 110 Copynumber: 1.8 Consensus size: 109
47590384 CTGGCCCGTA
* * * * *
47590394 CAGTCTTTAATAGCAACAGTGTGTCACATGGCCTGGATACACACCCGTGTCTCTGGCCCTGCAGT
1 CAGTCTCTAATAGCAACAGTGAGTCACACGGCCT-GACACACACCCATGTCTCTGGCCCTGCAGT
47590459 CTCTAATAGCAACAGTGAGTCACATGGCCTAGACACACGCTCGTG
65 CTCTAATAGCAACAGTGAGTCACATGGCCTAGACACACGCTCGTG
* * **
47590504 CAGTCTCTAATAGCAATAGTGAGTCACACGGCCT-ACCACATACCCATGTCTCTGGCCCGTGTGG
1 CAGTCTCTAATAGCAACAGTGAGTCACACGGCCTGA-CACACACCCATGTCTCTGGCCC-TGCAG
47590568 TCTCTAATAGCAACAGTGAGTCACA
64 TCTCTAATAGCAACAGTGAGTCACA
47590593 CGGCTTGGCA
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
108 1 0.01
109 19 0.24
110 58 0.74
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (109 bp):
CAGTCTCTAATAGCAACAGTGAGTCACACGGCCTGACACACACCCATGTCTCTGGCCCTGCAGTC
TCTAATAGCAACAGTGAGTCACATGGCCTAGACACACGCTCGTG
Found at i:47592650 original size:22 final size:22
Alignment explanation
Indices: 47592589--47592650 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 22
47592579 TAAATTACTA
47592589 AAATATAATAT-TGAAAATATAT
1 AAATAT-ATATGTGAAAATATAT
* * *
47592611 AAATACATGTAGAAGAAAATATAT
1 AAATATATAT-G-TGAAAATATAT
47592635 AAATATATATGTGAAA
1 AAATATATATGTGAAA
47592651 TTCAAACGCA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
21 3 0.10
22 9 0.29
23 1 0.03
24 18 0.58
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.31
Consensus pattern (22 bp):
AAATATATATGTGAAAATATAT
Found at i:47596133 original size:26 final size:26
Alignment explanation
Indices: 47596104--47596181 Score: 147
Period size: 26 Copynumber: 3.0 Consensus size: 26
47596094 GAGTAAAAAG
47596104 ATAGTGTAACGTTATGTTGAATGTGT
1 ATAGTGTAACGTTATGTTGAATGTGT
*
47596130 ATAGTGTAAAGTTATGTTGAATGTGT
1 ATAGTGTAACGTTATGTTGAATGTGT
47596156 ATAGTGTAACGTTATGTTGAATGTGT
1 ATAGTGTAACGTTATGTTGAATGTGT
47596182 GAATAGATGC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.03, G:0.27, T:0.42
Consensus pattern (26 bp):
ATAGTGTAACGTTATGTTGAATGTGT
Found at i:47598109 original size:44 final size:44
Alignment explanation
Indices: 47598013--47598906 Score: 456
Period size: 44 Copynumber: 20.7 Consensus size: 44
47598003 ATTTGCTATC
* * * * **
47598013 TTAGTCTGTTCCACTGCACCTTCAGGGAGATAGGA-TTATCGGCT
1 TTAGTCTGCTCCACTGCAACTTCA-GGAGATAAGACTTGTCATCT
* *
47598057 TTAATCTGCTCCACTGCAACTTCAGGAGATAAGATTTGTCATCT
1 TTAGTCTGCTCCACTGCAACTTCAGGAGATAAGACTTGTCATCT
* * * *
47598101 TCAGTCTGC-CAAACTGTAACTTCAGGAGGATAAGACTTG-CTTAC-
1 TTAGTCTGCTC-CACTGCAACTTCAGGA-GATAAGACTTGTCAT-CT
* * *
47598145 TTAGTCTGCTCCATTGTAACTTCAGGGAGATAAGACTAG--ATGC-
1 TTAGTCTGCTCCACTGCAACTTCA-GGAGATAAGACTTGTCAT-CT
* *
47598188 -GA-TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTATG--AT-T
1 TTAGTCTGCTCCACTGCAACTTCAG-GAGATAAGA-CT-TGTCATCT
* * * **
47598229 TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTGTCGGCT
1 TTAGTCTGCTCCACTGCAACTTCA-GGAGATAAGACTTGTCATCT
* * * *
47598273 TTAATCTGCTCCACTGTAACTTCAGGAAGATAAGATTTGCCATCT
1 TTAGTCTGCTCCACTGCAACTTCAGG-AGATAAGACTTGTCATCT
** * *
47598318 TCGGTCTGC-CTCACTGCAACTTCAGGAGGATAAGACTT-ACTTAC-
1 TTAGTCTGCTC-CACTGCAACTTCAGGA-GATAAGACTTGTCAT-CT
* *
47598362 TTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAG--ATGC-
1 TTAGTCTGCTCCACTGCAACTTCA-GGAGATAAGACTTGTCAT-CT
* * *
47598405 -GA-TCTG-T-CTCTGCAACTTCAGAGAGATAAGA-TCTGTGAT-T
1 TTAGTCTGCTCCACTGCAACTTCAG-GAGATAAGACT-TGTCATCT
* * * **
47598445 TTAAT-TGCTCCAC-GCAACTTCAGGGAGATAGGA-TTATCGGCT
1 TTAGTCTGCTCCACTGCAACTTCA-GGAGATAAGACTTGTCATCT
* * *
47598487 TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCT
1 TTAGTCTGCTCCACTGCAACTTCA-GGAGATAAGACTTGTCATCT
* * *
47598532 TCAGTCTCCT-CACTGCAACTTCAGGAGGATAAGACTTG-CTTAC-
1 TTAGTCTGCTCCACTGCAACTTCAGGA-GATAAGACTTGTCAT-CT
* *
47598575 TTAGCCTGCTCCACTGCAACTTCAGGGAGATAAGACTAG--ATGC-
1 TTAGTCTGCTCCACTGCAACTTCA-GGAGATAAGACTTGTCAT-CT
* * *
47598618 -GA-TCTGCT-CTCTGCAACTTCAGAGAGATAAGA-TCTGTGAT-T
1 TTAGTCTGCTCCACTGCAACTTCAG-GAGATAAGACT-TGTCATCT
* * * * * *
47598659 TTAAT-TCGCTCCACTGCAACTTTAGGGAAATAGGA-TTATCAGCT
1 TTAGTCT-GCTCCACTGCAACTTCA-GGAGATAAGACTTGTCATCT
* *
47598703 TTAATCTGCTCCACT-CAACTTCAGGGAGATAAGATTTGTCATCT
1 TTAGTCTGCTCCACTGCAACTTCA-GGAGATAAGACTTGTCATCT
*
47598747 TTAGTCTGC-CTCACTGCAACTTCAGGAGGATAAGACTTG-CTTAC-
1 TTAGTCTGCTC-CACTGCAACTTCAGGA-GATAAGACTTGTCAT-CT
* * *
47598791 TTAGCCTGTTCCACTGCAACTTCAGAGAGATAAGACTAG--ATGC-
1 TTAGTCTGCTCCACTGCAACTTCAG-GAGATAAGACTTGTCAT-CT
* * *
47598834 -GA-TCTGCT-CTCTGCAACTTCAGAGAGATAAGA-TCTGTGAT-T
1 TTAGTCTGCTCCACTGCAACTTCAG-GAGATAAGACT-TGTCATCT
* * *
47598875 TTATTCCGTTCCACTGCAACTTCAGGGAGATA
1 TTAGTCTGCTCCACTGCAACTTCA-GGAGATA
47598907 GGATTATCGG
Statistics
Matches: 670, Mismatches: 110, Indels: 140
0.73 0.12 0.15
Matches are distributed among these distances:
38 2 0.00
39 25 0.04
40 66 0.10
41 30 0.04
42 42 0.06
43 76 0.11
44 333 0.50
45 96 0.14
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (44 bp):
TTAGTCTGCTCCACTGCAACTTCAGGAGATAAGACTTGTCATCT
Found at i:47598417 original size:216 final size:217
Alignment explanation
Indices: 47598022--47598918 Score: 1509
Period size: 216 Copynumber: 4.2 Consensus size: 217
47598012 CTTAGTCTGT
*
47598022 TCCACTGCACCTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCA-GGAGA
1 TCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
* ** * *
47598086 TAAGATTTGTCATCTTCAGTCTGCCAAACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTC
66 TAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGCC
* *
47598151 TGCTCCATTGTAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGAT
131 TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGAT
*
47598216 AAGATCTATGATTTTAATCCGC
196 AAGATCTGTGATTTTAATCCGC
* * *
47598238 TCCACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGAAGA
1 TCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
* * *
47598303 TAAGATTTGCCATCTTCGGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTACTTACTTAGTC
66 TAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGCC
*
47598368 TGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTG-TCTCTGCAACTTCAGAGAGAT
131 TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGAT
*
47598432 AAGATCTGTGATTTTAAT-TGC
196 AAGATCTGTGATTTTAATCCGC
47598453 TCCAC-GCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
47598517 TAAGATTTGCCATCTTCAGTCT-CCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGCC
66 TAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGCC
47598581 TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGAT
131 TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGAT
*
47598646 AAGATCTGTGATTTTAATTCGC
196 AAGATCTGTGATTTTAATCCGC
* * *
47598668 TCCACTGCAACTTTAGGGAAATAGGATTATCAGCTTTAATCTGCTCCACT-CAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
* *
47598732 TAAGATTTGTCATCTTTAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGCC
66 TAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGCC
* *
47598797 TGTTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGAT
131 TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGAT
* *
47598862 AAGATCTGTGATTTTATTCCGT
196 AAGATCTGTGATTTTAATCCGC
47598884 TCCACTGCAACTTCAGGGAGATAGGATTATCGGCT
1 TCCACTGCAACTTCAGGGAGATAGGATTATCGGCT
47598919 ACGGATTTGT
Statistics
Matches: 640, Mismatches: 36, Indels: 10
0.93 0.05 0.01
Matches are distributed among these distances:
213 82 0.13
214 116 0.18
215 48 0.08
216 291 0.45
217 103 0.16
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (217 bp):
TCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
TAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGCC
TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGAT
AAGATCTGTGATTTTAATCCGC
Found at i:47598847 original size:430 final size:431
Alignment explanation
Indices: 47598022--47598918 Score: 1505
Period size: 430 Copynumber: 2.1 Consensus size: 431
47598012 CTTAGTCTGT
*
47598022 TCCACTGCACCTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGAGAT
1 TCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGAGAT
* * *
47598087 AAGATTTGTCATCTTCAGTCTGCCAAACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCT
66 AAGATTTGCCATCTTCAGTCTGCCAAACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGCCT
* *
47598152 GCTCCATTGTAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
131 GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
* * *
47598217 AGATCTATGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGC
196 AGATCTATGATTTTAATCCGCTCCACTGCAACTTCAGGGAAATAGGATTATCAGCTTTAATCTGC
* *
47598282 TCCACTGTAACTTCAGGAAGATAAGATTTGCCATCTTCGGTCTGCCTCACTGCAACTTCAGGAGG
261 TCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
* *
47598347 ATAAGACTTACTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGT
326 ATAAGACTTACTTACTTAGCCTGCTCCACTACAACTTCAGAGAGATAAGACTAGATGCGATCTGT
47598412 CTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATT-GC
391 CTCTGCAACTTCAGAGAGATAAGATCTGTGATTTT-ATTCGC
47598453 TCCAC-GCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCA-GGAGA
**
47598517 TAAGATTTGCCATCTTCAGTCT-CCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGCC
65 TAAGATTTGCCATCTTCAGTCTGCCAAACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGCC
47598581 TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGAT
130 TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGAT
* * *
47598646 AAGATCTGTGATTTTAATTCGCTCCACTGCAACTTTAGGGAAATAGGATTATCAGCTTTAATCTG
195 AAGATCTATGATTTTAATCCGCTCCACTGCAACTTCAGGGAAATAGGATTATCAGCTTTAATCTG
* * *
47598711 CTCCACT-CAACTTCAGGGAGATAAGATTTGTCATCTTTAGTCTGCCTCACTGCAACTTCAGGAG
260 CTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAG
* * *
47598775 GATAAGACTTGCTTACTTAGCCTGTTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATCTG
325 GATAAGACTTACTTACTTAGCCTGCTCCACTACAACTTCAGAGAGATAAGACTAGATGCGATCTG
*
47598840 CTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTATTCCGT
390 -TCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTATT-CGC
47598884 TCCACTGCAACTTCAGGGAGATAGGATTATCGGCT
1 TCCACTGCAACTTCAGGGAGATAGGATTATCGGCT
47598919 ACGGATTTGT
Statistics
Matches: 436, Mismatches: 25, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
429 115 0.26
430 255 0.58
431 37 0.08
432 29 0.07
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (431 bp):
TCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGAGAT
AAGATTTGCCATCTTCAGTCTGCCAAACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGCCT
GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
AGATCTATGATTTTAATCCGCTCCACTGCAACTTCAGGGAAATAGGATTATCAGCTTTAATCTGC
TCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
ATAAGACTTACTTACTTAGCCTGCTCCACTACAACTTCAGAGAGATAAGACTAGATGCGATCTGT
CTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTATTCGC
Found at i:47613626 original size:47 final size:47
Alignment explanation
Indices: 47613568--47613857 Score: 526
Period size: 47 Copynumber: 6.2 Consensus size: 47
47613558 CAGCCAAGAC
*
47613568 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
47613615 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
47613662 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAG
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
47613709 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAG
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
47613756 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAG
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
47613803 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
47613850 AGTGTATA
1 AGTGTATA
47613858 GCATTTGTGT
Statistics
Matches: 238, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 238 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:47614023 original size:37 final size:37
Alignment explanation
Indices: 47613967--47614045 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
47613957 CCGAGCTCTA
* *
47613967 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
47614004 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
47614041 AAGAC
1 AAGAC
47614046 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:47619081 original size:33 final size:33
Alignment explanation
Indices: 47619039--47619116 Score: 147
Period size: 33 Copynumber: 2.4 Consensus size: 33
47619029 GTTTTAAGCA
47619039 CTCTAACCAACATCTTTAAAAAATAAAAAAGTT
1 CTCTAACCAACATCTTTAAAAAATAAAAAAGTT
*
47619072 CTCTAACCAACATCTTTAAAAATTAAAAAAGTT
1 CTCTAACCAACATCTTTAAAAAATAAAAAAGTT
47619105 CTCTAACCAACA
1 CTCTAACCAACA
47619117 GAGATCCAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.49, C:0.22, G:0.03, T:0.27
Consensus pattern (33 bp):
CTCTAACCAACATCTTTAAAAAATAAAAAAGTT
Found at i:47622315 original size:21 final size:22
Alignment explanation
Indices: 47622286--47622332 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
47622276 CAGAAGGAGT
*
47622286 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
47622308 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
47622329 GAGT
1 GAGT
47622333 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:47632799 original size:25 final size:25
Alignment explanation
Indices: 47632744--47632791 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
47632734 AAAATCTACT
47632744 CTAAAAAGAAAAGAGAAAACCTAAA
1 CTAAAAAGAAAAGAGAAAACCTAAA
*
47632769 CTAAAAATAAAA-AGAAAACCTAA
1 CTAAAAAGAAAAGAGAAAACCTAA
47632792 CCCTAAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.69, C:0.12, G:0.08, T:0.10
Consensus pattern (25 bp):
CTAAAAAGAAAAGAGAAAACCTAAA
Found at i:47640952 original size:41 final size:41
Alignment explanation
Indices: 47640884--47641110 Score: 248
Period size: 41 Copynumber: 5.5 Consensus size: 41
47640874 GAGTGTAAAT
* * *
47640884 AGGGGCACGTATGT-CTAATTTAGGGGTACCAAAGTACAATT
1 AGGGGCACGTATGTGC-AATTCAAGGGTACCAAAGTACAATA
* *
47640925 AGGAGCACGCATGTGCAATTCAAGGGTACCAAAGTACAGA-A
1 AGGGGCACGTATGTGCAATTCAAGGGTACCAAAGTACA-ATA
* * *
47640966 AGGGGCAC-TCATGTGCAATTTAGGGGTATCAAAGTACAA-A
1 AGGGGCACGT-ATGTGCAATTCAAGGGTACCAAAGTACAATA
* *
47641006 TAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAA-A
1 -AGGGGCACGTATGTGCAATTCAAGGGTACCAAAGTACAATA
* * *
47641047 CAAGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAATC
1 -AGGGGCACGTATGTGCAATTCAAGGGTACCAAAGTACAATA
*
47641089 AGGGGCACATATGTGCAATTCA
1 AGGGGCACGTATGTGCAATTCA
47641111 GGGAATAATT
Statistics
Matches: 161, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
40 2 0.01
41 156 0.97
42 3 0.02
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.21
Consensus pattern (41 bp):
AGGGGCACGTATGTGCAATTCAAGGGTACCAAAGTACAATA
Found at i:47640999 original size:82 final size:82
Alignment explanation
Indices: 47640884--47641110 Score: 298
Period size: 82 Copynumber: 2.8 Consensus size: 82
47640874 GAGTGTAAAT
* *
47640884 AGGGGCACGTATGT-CTAATTTAGGGGTACCAAAGTACAATTAGGAGCACGCATGTGCAATTCAA
1 AGGGGCACGTATGTGC-AATTTAGGGGTACCAAAGTACAATTAGGGGCACGTATGTGCAATTCAA
47640948 GGGTACCAAAGTACAGAA-
65 GGGTACCAAAGTACA-AAC
* * *
47640966 AGGGGCAC-TCATGTGCAATTTAGGGGTATCAAAGTACAAATAGGGGCACGTATGTGCAATTCAG
1 AGGGGCACGT-ATGTGCAATTTAGGGGTACCAAAGTACAATTAGGGGCACGTATGTGCAATTCAA
*
47641030 GGGTACCGAAGTACAAAC
65 GGGTACCAAAGTACAAAC
* * * * * *
47641048 AAGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAATCAGGGGCACATATGTGCAATTCA
1 AGGGGCACGTATGTGCAATTTAGGGGTACCAAAGTACAATTAGGGGCACGTATGTGCAATTCA
47641111 GGGAATAATT
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
81 3 0.02
82 122 0.96
83 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.21
Consensus pattern (82 bp):
AGGGGCACGTATGTGCAATTTAGGGGTACCAAAGTACAATTAGGGGCACGTATGTGCAATTCAAG
GGTACCAAAGTACAAAC
Found at i:47641077 original size:123 final size:123
Alignment explanation
Indices: 47640880--47641113 Score: 332
Period size: 123 Copynumber: 1.9 Consensus size: 123
47640870 ATCGGAGTGT
* **
47640880 AAATAGGGGCACGTATGTCTAATTTAGGGGTACCAAAGTACAATTAGGAGCACGCATGTGCAATT
1 AAATAGGGGCACGTATGTCTAATTCAGGGGTACCAAAGTACAACAAGGAGCACGCATGTGCAATT
*
47640945 CAAGGGTACCAAAGTACAGA-AAGGGGCAC-TCATGTGCAATTTAGGGGTATCAAAGTAC
66 CAAGGGTACCAAAGTACA-ATAAGGGGCACAT-ATGTGCAATTCAGGGGTATCAAAGTAC
* *
47641003 AAATAGGGGCACGTATGTGC-AATTCAGGGGTACCGAAGTACAAACAAGG-GCACGTATGTGCAA
1 AAATAGGGGCACGTATGT-CTAATTCAGGGGTACCAAAGTAC-AACAAGGAGCACGCATGTGCAA
* *
47641066 TTCAAGGGTACCGAAGTACAATCAGGGGCACATATGTGCAATTCAGGG
64 TTCAAGGGTACCAAAGTACAATAAGGGGCACATATGTGCAATTCAGGG
47641114 AATAATTAAG
Statistics
Matches: 99, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
122 1 0.01
123 91 0.92
124 7 0.07
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (123 bp):
AAATAGGGGCACGTATGTCTAATTCAGGGGTACCAAAGTACAACAAGGAGCACGCATGTGCAATT
CAAGGGTACCAAAGTACAATAAGGGGCACATATGTGCAATTCAGGGGTATCAAAGTAC
Found at i:47641111 original size:21 final size:21
Alignment explanation
Indices: 47641007--47641113 Score: 74
Period size: 21 Copynumber: 5.2 Consensus size: 21
47640997 AAGTACAAAT
*
47641007 AGGGGCACGTATGTGCAATTC
1 AGGGGCACCTATGTGCAATTC
* * * * *
47641028 AGGGGTACCGAAGTACAA-AC
1 AGGGGCACCTATGTGCAATTC
* *
47641048 AAGGGCACGTATGTGCAATTC
1 AGGGGCACCTATGTGCAATTC
* * * * *
47641069 AAGGGTACCGAAGTACAA-TC
1 AGGGGCACCTATGTGCAATTC
*
47641089 AGGGGCACATATGTGCAATTC
1 AGGGGCACCTATGTGCAATTC
47641110 AGGG
1 AGGG
47641114 AATAATTAAG
Statistics
Matches: 60, Mismatches: 24, Indels: 4
0.68 0.27 0.05
Matches are distributed among these distances:
20 27 0.45
21 33 0.55
ACGTcount: A:0.32, C:0.19, G:0.31, T:0.19
Consensus pattern (21 bp):
AGGGGCACCTATGTGCAATTC
Found at i:47647298 original size:50 final size:50
Alignment explanation
Indices: 47647158--47647298 Score: 210
Period size: 50 Copynumber: 2.8 Consensus size: 50
47647148 TCCTGTACTA
* *** *
47647158 CCAATGCCATATCCCAGACATGGTCTTATGGGGGACCTCTCATCTCAGCG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCAGCG
* * *
47647208 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCAGCG
47647258 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
47647299 TACCCAAATG
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 82 1.00
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCAGCG
Found at i:47651258 original size:41 final size:41
Alignment explanation
Indices: 47651198--47651442 Score: 204
Period size: 41 Copynumber: 6.0 Consensus size: 41
47651188 GATTCAAAGT
* * * * *
47651198 TACCGGAGTATAAACAGGGGTACACATGTGCAATTTAGGGG
1 TACCGAAGTACAAACAGGGGCACATATGTGCAATTCAGGGG
* * * *
47651239 TACCGAAGTATAAATAGGGGAACATATGTGCAATTGAGGGG
1 TACCGAAGTACAAACAGGGGCACATATGTGCAATTCAGGGG
* * * * * * * *
47651280 TACTGAAATACAAATAAGGGCACGTATGTGTAGTTCAGAGG
1 TACCGAAGTACAAACAGGGGCACATATGTGCAATTCAGGGG
* * *** * *
47651321 TATCGAAGCACAAACAATAGAACGTATGTGCAATTCAGGGG
1 TACCGAAGTACAAACAGGGGCACATATGTGCAATTCAGGGG
* ** *
47651362 TACCGAAGTATAAACAGGGGCAGGTATGTGCAATTCAAGGG
1 TACCGAAGTACAAACAGGGGCACATATGTGCAATTCAGGGG
**
47651403 TACCGAAGTACAATTAGGGGCACGA-ATGTGCAATTCAGGG
1 TACCGAAGTACAAACAGGGGCAC-ATATGTGCAATTCAGGG
47651443 AATAATTGAC
Statistics
Matches: 162, Mismatches: 41, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
41 162 1.00
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.21
Consensus pattern (41 bp):
TACCGAAGTACAAACAGGGGCACATATGTGCAATTCAGGGG
Found at i:47651432 original size:82 final size:82
Alignment explanation
Indices: 47651198--47651442 Score: 233
Period size: 82 Copynumber: 3.0 Consensus size: 82
47651188 GATTCAAAGT
* * ** * * *
47651198 TACCGGAGTATAAACAGGGGTACACATGTGCAATTTAGGGGTACCGAAGTATAAATAGGGGAAC-
1 TACCGAAGTATAAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAATAGGGGAACG
*
47651262 ATATGTGCAATTGAGGGG
66 A-ATGTGCAATTCAGGGG
* * * * * * * * * * ***
47651280 TACTGAAATACAAATAAGGGCACGTATGTGTAGTTC-AGAGGTATCGAAGCACAAACAATAGAAC
1 TACCGAAGTATAAACAGGGGCACGTATGTGCAATTCAAG-GGTACCGAAGTACAAATAGGGGAAC
*
47651344 GTATGTGCAATTCAGGGG
65 GAATGTGCAATTCAGGGG
* * *
47651362 TACCGAAGTATAAACAGGGGCAGGTATGTGCAATTCAAGGGTACCGAAGTACAATTAGGGGCACG
1 TACCGAAGTATAAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAATAGGGGAACG
47651427 AATGTGCAATTCAGGG
66 AATGTGCAATTCAGGG
47651443 AATAATTGAC
Statistics
Matches: 121, Mismatches: 39, Indels: 6
0.73 0.23 0.04
Matches are distributed among these distances:
81 1 0.01
82 118 0.98
83 2 0.02
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.21
Consensus pattern (82 bp):
TACCGAAGTATAAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAATAGGGGAACG
AATGTGCAATTCAGGGG
Found at i:47660346 original size:22 final size:22
Alignment explanation
Indices: 47660330--47660372 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
47660320 AATGGTTATA
47660330 AACCATAATCAGGATGGCACAG
1 AACCATAATCAGGATGGCACAG
*
47660352 AGCCATAATCAGGATGGCACA
1 AACCATAATCAGGATGGCACA
47660373 AAGCTATCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.23, G:0.23, T:0.14
Consensus pattern (22 bp):
AACCATAATCAGGATGGCACAG
Found at i:47660751 original size:16 final size:16
Alignment explanation
Indices: 47660725--47660768 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
47660715 TCCCAACCCC
*
47660725 ATGCTGAATGTCATGT
1 ATGCAGAATGTCATGT
*
47660741 TTGCAGAATGTCATGT
1 ATGCAGAATGTCATGT
*
47660757 ATGTAGAATGTC
1 ATGCAGAATGTC
47660769 TCGCCCATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.36
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Found at i:47660926 original size:27 final size:27
Alignment explanation
Indices: 47660896--47661065 Score: 164
Period size: 27 Copynumber: 6.3 Consensus size: 27
47660886 TATTTCAATA
*
47660896 ATTTTACCCCACAAGGGCATTACGGTC
1 ATTTTACCCTACAAGGGCATTACGGTC
* * *
47660923 ATTTTTCCCTAC-AGGGATATTACAGTC
1 ATTTTACCCTACAAGGG-CATTACGGTC
* * * *
47660950 ATTTTACCCTATAGGGGCATTACAGTA
1 ATTTTACCCTACAAGGGCATTACGGTC
*
47660977 ATTTTACCTTACAAGGGCATTACGGTC
1 ATTTTACCCTACAAGGGCATTACGGTC
* ***
47661004 ATTTTA-ACTGAGTGGGGCATTACGGTC
1 ATTTTACCCT-ACAAGGGCATTACGGTC
* *
47661031 ATTTTACCCTACAGGGGCATTACGATC
1 ATTTTACCCTACAAGGGCATTACGGTC
*
47661058 ATTATACC
1 ATTTTACC
47661066 TATTTTAGGG
Statistics
Matches: 115, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
26 5 0.04
27 105 0.91
28 5 0.04
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (27 bp):
ATTTTACCCTACAAGGGCATTACGGTC
Found at i:47660982 original size:81 final size:81
Alignment explanation
Indices: 47660865--47661053 Score: 227
Period size: 81 Copynumber: 2.3 Consensus size: 81
47660855 GGGGGAAAAT
* * * * *
47660865 AGTCATTTTACCCTTTGGGGGTATTTCAATAATTTTACCCCACAAGGGCATTACGGTCATTTTTC
1 AGTCATTTTACCCTATAGGGGCATTACAATAATTTTACCCCACAAGGGCATTACGGTCA-TTTTA
* *
47660930 CCT-ACAGGGATATTAC
65 ACTGACAGGGACATTAC
* **
47660946 AGTCATTTTACCCTATAGGGGCATTACAGTAATTTTACCTTACAAGGGCATTACGGTCATTTTAA
1 AGTCATTTTACCCTATAGGGGCATTACAATAATTTTACCCCACAAGGGCATTACGGTCATTTTAA
** *
47661011 CTGAGTGGGGCATTAC
66 CTGACAGGGACATTAC
* *
47661027 GGTCATTTTACCCTACAGGGGCATTAC
1 AGTCATTTTACCCTATAGGGGCATTAC
47661054 GATCATTATA
Statistics
Matches: 92, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 6 0.07
81 86 0.93
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (81 bp):
AGTCATTTTACCCTATAGGGGCATTACAATAATTTTACCCCACAAGGGCATTACGGTCATTTTAA
CTGACAGGGACATTAC
Found at i:47668279 original size:45 final size:45
Alignment explanation
Indices: 47668230--47668348 Score: 132
Period size: 45 Copynumber: 2.6 Consensus size: 45
47668220 CGAAATAAGA
** *
47668230 AAGACCATAGTTGAAAGATACTATGGCATTAAACCGGGAT-TGGGT
1 AAGACCATAGTTGAAAGATACTATGGCATTAAA-CGGGATACAGAT
* * * ***
47668275 AAGACCATAGTCGAAAGATATTATGACATTAAATTTGATACAGAT
1 AAGACCATAGTTGAAAGATACTATGGCATTAAACGGGATACAGAT
*
47668320 AAGACCATAATTGAAAGATACTATGGCAT
1 AAGACCATAGTTGAAAGATACTATGGCAT
47668349 CACATCGGTA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
44 3 0.05
45 57 0.95
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (45 bp):
AAGACCATAGTTGAAAGATACTATGGCATTAAACGGGATACAGAT
Found at i:47671319 original size:10 final size:10
Alignment explanation
Indices: 47671304--47671331 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
47671294 ATACTATAGC
47671304 TGAATCATTA
1 TGAATCATTA
47671314 TGAATCATTA
1 TGAATCATTA
47671324 TGAATCAT
1 TGAATCAT
47671332 ATAGTCGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (10 bp):
TGAATCATTA
Found at i:47672045 original size:21 final size:21
Alignment explanation
Indices: 47672021--47672064 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
47672011 ATGACCTAAT
*
47672021 TAAATAGAAAGGATA-ATTAAA
1 TAAATA-AAAGGATACAATAAA
*
47672042 TAAATAAAATGATACAATAAA
1 TAAATAAAAGGATACAATAAA
47672063 TA
1 TA
47672065 CTAAATATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (21 bp):
TAAATAAAAGGATACAATAAA
Found at i:47686814 original size:34 final size:34
Alignment explanation
Indices: 47686766--47686834 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
47686756 ATTTAGTAAA
*
47686766 TGTTAGGATGCGATTAGCATGTCAATAGGTCTTG
1 TGTTAGGATACGATTAGCATGTCAATAGGTCTTG
47686800 TGTTAGGATACGATTAGCATGTCAATAGGTCTTG
1 TGTTAGGATACGATTAGCATGTCAATAGGTCTTG
47686834 T
1 T
47686835 TCGCGCTTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.36
Consensus pattern (34 bp):
TGTTAGGATACGATTAGCATGTCAATAGGTCTTG
Found at i:47687529 original size:21 final size:21
Alignment explanation
Indices: 47687491--47687530 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
47687481 AATGCCTTGC
*
47687491 GTGGCGCGACATGCAATGTCT
1 GTGGCGCGACACGCAATGTCT
* *
47687512 GTGGTGCGACACGTAATGT
1 GTGGCGCGACACGCAATGT
47687531 TTGCGTTTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.35, T:0.25
Consensus pattern (21 bp):
GTGGCGCGACACGCAATGTCT
Found at i:47697746 original size:22 final size:19
Alignment explanation
Indices: 47697715--47697761 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
47697705 AAAGATGATA
47697715 ATTATTAATATATAATTATATCT
1 ATTA-TAATATAT-ATTA-AT-T
47697738 ATTATAATATATATTAATT
1 ATTATAATATATATTAATT
47697757 ATTAT
1 ATTAT
47697762 CAGCTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 4 0.17
22 8 0.33
23 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATAATATATATTAATT
Found at i:47697757 original size:16 final size:15
Alignment explanation
Indices: 47697717--47697758 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
47697707 AGATGATAAT
47697717 TATTAATATATAATTA
1 TATTAAT-TATAATTA
47697733 TATCT-ATTATAATATA
1 TAT-TAATTATAAT-TA
47697749 TATTAATTAT
1 TATTAATTAT
47697759 TATCAGCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:47705263 original size:12 final size:12
Alignment explanation
Indices: 47705246--47705301 Score: 103
Period size: 12 Copynumber: 4.7 Consensus size: 12
47705236 TACCGAATTA
47705246 AATTAATTCTAT
1 AATTAATTCTAT
47705258 AATTAATTCTAT
1 AATTAATTCTAT
47705270 AATTAATTCTAT
1 AATTAATTCTAT
*
47705282 AATTATTTCTAT
1 AATTAATTCTAT
47705294 AATTAATT
1 AATTAATT
47705302 TAATTCAAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (12 bp):
AATTAATTCTAT
Found at i:47721069 original size:20 final size:20
Alignment explanation
Indices: 47721036--47721079 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
47721026 CAGCTTCCAA
* *
47721036 AGCTCATTTCAGCTCCAATC
1 AGCTCACTTCAGCTCAAATC
* *
47721056 AGCTCACTTGAGCTTAAATC
1 AGCTCACTTCAGCTCAAATC
47721076 AGCT
1 AGCT
47721080 AGTTTAAGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (20 bp):
AGCTCACTTCAGCTCAAATC
Found at i:47722599 original size:15 final size:15
Alignment explanation
Indices: 47722581--47722630 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
47722571 TTGTATTGTT
*
47722581 AAATTTGAAGTAAAA
1 AAATTCGAAGTAAAA
*
47722596 AAATTCGAGATTAAAA
1 AAATTCGA-AGTAAAA
*
47722612 AAATACGAAGTATAAA
1 AAATTCGAAGTA-AAA
47722628 AAA
1 AAA
47722631 AATTCGTGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 10 0.34
16 19 0.66
ACGTcount: A:0.62, C:0.04, G:0.12, T:0.22
Consensus pattern (15 bp):
AAATTCGAAGTAAAA
Found at i:47722612 original size:16 final size:17
Alignment explanation
Indices: 47722591--47722649 Score: 75
Period size: 17 Copynumber: 3.5 Consensus size: 17
47722581 AAATTTGAAG
47722591 TAAAAAAATTCGAG-AT
1 TAAAAAAATTCGAGTAT
*
47722607 TAAAAAAATACGAAGTAT
1 TAAAAAAATTCG-AGTAT
* *
47722625 AAAAAAAATTCGTGTAT
1 TAAAAAAATTCGAGTAT
47722642 TAAAAAAA
1 TAAAAAAA
47722650 AAGTGAAGTC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
16 11 0.31
17 13 0.36
18 12 0.33
ACGTcount: A:0.61, C:0.05, G:0.10, T:0.24
Consensus pattern (17 bp):
TAAAAAAATTCGAGTAT
Done.