Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 164 of 230
Found at i:48760593 original size:86 final size:86
Alignment explanation
Indices: 48760394--48760823 Score: 621
Period size: 86 Copynumber: 5.0 Consensus size: 86
48760384 AATCTGTAAC
* * ** * * * * *
48760394 CTTTAACCAGCTCCAAT-GCAACCGATGGAGGCAAGGCTTTGT-TTTTTGATCTGCTTTGTTGTT
1 CTTTAACCAGCT-CTATCACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTC
* *
48760457 AATGCAGGAAGGCAAGATCTGCTT
64 AATGTAGGAAGGCAAGATCT-TTT
* *
48760481 CTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA
1 CTTTAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA
48760546 TGTAGGAAGGCAAGATCTTTT
66 TGTAGGAAGGCAAGATCTTTT
48760567 CTTTAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA
1 CTTTAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA
48760632 TGTAGGAAGGCAAGATCTTTT
66 TGTAGGAAGGCAAGATCTTTT
*
48760653 CTTTAACCAGCTCTATCACAACCGACAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA
1 CTTTAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA
48760718 TGTAGGAAGGCAAGATCTTTTGT
66 TGTAGGAAGGCAAGATC-TTT-T
* * * * *
48760741 CTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTATGTCTTCGACCTGCTTCACTATCAA
1 CTTTAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA
*
48760806 TGCAGGAAGGCAAGATCT
66 TGTAGGAAGGCAAGATCT
48760824 GTAACTTCAT
Statistics
Matches: 317, Mismatches: 22, Indels: 8
0.91 0.06 0.02
Matches are distributed among these distances:
86 175 0.55
87 66 0.21
88 76 0.24
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (86 bp):
CTTTAACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAA
TGTAGGAAGGCAAGATCTTTT
Found at i:48760601 original size:42 final size:42
Alignment explanation
Indices: 48760553--48760687 Score: 103
Period size: 42 Copynumber: 3.2 Consensus size: 42
48760543 CAATGTAGGA
48760553 AGGCAAGATCTTTTCTTTAACCAGCTCTATCACAACCGAAAG
1 AGGCAAGATCTTTTCTTTAACCAGCTCTATCACAACCGAAAG
* ** * * ** ** * * *
48760595 AGGCAAGGT-TTGTGTCTTCGATCTGCTTCGCTGTCAA-TGTAGG
1 AGGCAAGATCTT-T-TCTTTAACCAGC-TCTATCACAACCGAAAG
*
48760638 AAGGCAAGATCTTTTCTTTAACCAGCTCTATCACAACCGACAG
1 -AGGCAAGATCTTTTCTTTAACCAGCTCTATCACAACCGAAAG
48760681 AGGCAAG
1 AGGCAAG
48760688 GTTTGTGTCT
Statistics
Matches: 62, Mismatches: 25, Indels: 12
0.63 0.25 0.12
Matches are distributed among these distances:
41 2 0.03
42 22 0.35
43 21 0.34
44 15 0.24
45 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (42 bp):
AGGCAAGATCTTTTCTTTAACCAGCTCTATCACAACCGAAAG
Found at i:48760817 original size:44 final size:43
Alignment explanation
Indices: 48760681--48760819 Score: 104
Period size: 44 Copynumber: 3.2 Consensus size: 43
48760671 CAACCGACAG
* * * *
48760681 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGA
1 AGGCAAGGTTTATGTCTTCGACCTGCTTC-CTATCAATGCAGGA
* * * * * * *
48760725 AGGCAAGATCTTTTGTCTTCAACCAGC-T-CTATCACA-ACCGAAA
1 AGGCAAGGT-TTATGTCTTCGACCTGCTTCCTATCA-ATGCAG-GA
48760768 GAGGCAAGGTTTATGTCTTCGACCTGCTTCACTATCAATGCAGGA
1 -AGGCAAGGTTTATGTCTTCGACCTGCTTC-CTATCAATGCAGGA
48760813 AGGCAAG
1 AGGCAAG
48760820 ATCTGTAACT
Statistics
Matches: 70, Mismatches: 17, Indels: 16
0.68 0.17 0.16
Matches are distributed among these distances:
42 6 0.09
43 16 0.23
44 25 0.36
45 15 0.21
46 8 0.11
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (43 bp):
AGGCAAGGTTTATGTCTTCGACCTGCTTCCTATCAATGCAGGA
Found at i:48765126 original size:19 final size:20
Alignment explanation
Indices: 48765102--48765145 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
48765092 CGTGAAAATC
*
48765102 TAATGCATATG-ATGCAATG
1 TAATGCAGATGCATGCAATG
*
48765121 TAATGCAGATGCATGGAATG
1 TAATGCAGATGCATGCAATG
48765141 -AATGC
1 TAATGC
48765146 CTAAAGAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.27
Consensus pattern (20 bp):
TAATGCAGATGCATGCAATG
Found at i:48767047 original size:12 final size:12
Alignment explanation
Indices: 48767032--48767063 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
48767022 TATTGAAAAT
48767032 ATAAATAAAGAA
1 ATAAATAAAGAA
48767044 ATAAATAAAGAA
1 ATAAATAAAGAA
*
48767056 ATGAATAA
1 ATAAATAA
48767064 GGCTATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.19
Consensus pattern (12 bp):
ATAAATAAAGAA
Found at i:48767733 original size:3 final size:3
Alignment explanation
Indices: 48767719--48767771 Score: 56
Period size: 3 Copynumber: 17.7 Consensus size: 3
48767709 CAAATAAAAC
* *
48767719 TAA TAA TGA TAA TAAA TAA TAA TAA TAA TAA TAA -AA CTAA T-T TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
48767764 TAA TAA TA
1 TAA TAA TA
48767772 GAAATAACAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
2 3 0.07
3 34 0.81
4 5 0.12
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:48767740 original size:16 final size:16
Alignment explanation
Indices: 48767719--48767749 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
48767709 CAAATAAAAC
*
48767719 TAATAATGATAATAAA
1 TAATAATAATAATAAA
48767735 TAATAATAATAATAA
1 TAATAATAATAATAA
48767750 TAAAACTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (16 bp):
TAATAATAATAATAAA
Found at i:48770894 original size:16 final size:16
Alignment explanation
Indices: 48770870--48770902 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
48770860 CAGTTGAGAT
*
48770870 TGTGTAAATATGATAA
1 TGTGCAAATATGATAA
48770886 TGTGCAAATATGATAA
1 TGTGCAAATATGATAA
48770902 T
1 T
48770903 TGGATATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.36
Consensus pattern (16 bp):
TGTGCAAATATGATAA
Found at i:48789820 original size:27 final size:27
Alignment explanation
Indices: 48789790--48789847 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
48789780 ATCACTACCT
48789790 TTCATCTCTTCTCTTTAAAAGTTAAAG
1 TTCATCTCTTCTCTTTAAAAGTTAAAG
48789817 TTCATCTCTTCTCTTTAAAAGTTAAAG
1 TTCATCTCTTCTCTTTAAAAGTTAAAG
48789844 TTCA
1 TTCA
48789848 AACTTGGCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.29, C:0.19, G:0.07, T:0.45
Consensus pattern (27 bp):
TTCATCTCTTCTCTTTAAAAGTTAAAG
Found at i:48791054 original size:46 final size:46
Alignment explanation
Indices: 48790998--48791132 Score: 153
Period size: 46 Copynumber: 2.9 Consensus size: 46
48790988 TATTATTCTG
* * *
48790998 TATTCTCCAGTTTGCAACAAATGCGAGAACTGGGAACCTAAATCCA
1 TATTCACCAGTCTGCAACAAATGCAAGAACTGGGAACCTAAATCCA
* ** * * * *
48791044 TATTCACCAGTCCGCAACATGTGAAAGCACTGGGAACCTAATTCCG
1 TATTCACCAGTCTGCAACAAATGCAAGAACTGGGAACCTAAATCCA
* * *
48791090 TATTCACCAATCTGCAAGAAATGCAAGAGCTGGGAACCTAAAT
1 TATTCACCAGTCTGCAACAAATGCAAGAACTGGGAACCTAAAT
48791133 TTGTATGCAC
Statistics
Matches: 70, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (46 bp):
TATTCACCAGTCTGCAACAAATGCAAGAACTGGGAACCTAAATCCA
Found at i:48796450 original size:19 final size:21
Alignment explanation
Indices: 48796386--48796503 Score: 123
Period size: 21 Copynumber: 5.7 Consensus size: 21
48796376 TGAATACACC
* * *
48796386 AACAGAAACTCGTAAGAACTG
1 AACAGAAGCTCATAAGAGCTG
48796407 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
**
48796428 AACAGAAGCTCA-AA-ATTTG
1 AACAGAAGCTCATAAGAGCTG
** *
48796447 AACAGAAGCTTGTAAGAGCTA
1 AACAGAAGCTCATAAGAGCTG
* * *
48796468 AACAAAAACTCATAAGAGTTG
1 AACAGAAGCTCATAAGAGCTG
48796489 AACAGAAGCTCATAA
1 AACAGAAGCTCATAA
48796504 TGTAACATCC
Statistics
Matches: 77, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
19 13 0.17
20 4 0.05
21 60 0.78
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:48796451 original size:40 final size:42
Alignment explanation
Indices: 48796386--48796503 Score: 132
Period size: 40 Copynumber: 2.9 Consensus size: 42
48796376 TGAATACACC
* * ** *
48796386 AACAGAAACTCGTAAGAACTGAACAGAAGCTCATAAGAGCTG
1 AACAAAAACTCATAAGAGTTGAACAGAAGCTCATAAGAGCTA
* * * **
48796428 AACAGAAGCTCA-AA-ATTTGAACAGAAGCTTGTAAGAGCTA
1 AACAAAAACTCATAAGAGTTGAACAGAAGCTCATAAGAGCTA
48796468 AACAAAAACTCATAAGAGTTGAACAGAAGCTCATAA
1 AACAAAAACTCATAAGAGTTGAACAGAAGCTCATAA
48796504 TGTAACATCC
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
40 31 0.50
41 4 0.06
42 27 0.44
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (42 bp):
AACAAAAACTCATAAGAGTTGAACAGAAGCTCATAAGAGCTA
Found at i:48796482 original size:61 final size:61
Alignment explanation
Indices: 48796386--48796500 Score: 167
Period size: 61 Copynumber: 1.9 Consensus size: 61
48796376 TGAATACACC
* * *
48796386 AACAGAAACTCGTAAGAACTGAACAGAAGCTCATAAGAGCTGAACAGAAGCTCAAAATTTG
1 AACAGAAACTCGTAAGAACTAAACAAAAACTCATAAGAGCTGAACAGAAGCTCAAAATTTG
* * * *
48796447 AACAGAAGCTTGTAAGAGCTAAACAAAAACTCATAAGAGTTGAACAGAAGCTCA
1 AACAGAAACTCGTAAGAACTAAACAAAAACTCATAAGAGCTGAACAGAAGCTCA
48796501 TAATGTAACA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (61 bp):
AACAGAAACTCGTAAGAACTAAACAAAAACTCATAAGAGCTGAACAGAAGCTCAAAATTTG
Found at i:48799860 original size:17 final size:17
Alignment explanation
Indices: 48799840--48799876 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
48799830 AAATCCAATT
48799840 CAAT-ATTATAATTCCAA
1 CAATAATTA-AATTCCAA
48799857 CAATAATTAAATTCCAA
1 CAATAATTAAATTCCAA
48799874 CAA
1 CAA
48799877 AACAATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.51, C:0.19, G:0.00, T:0.30
Consensus pattern (17 bp):
CAATAATTAAATTCCAA
Found at i:48801995 original size:18 final size:19
Alignment explanation
Indices: 48801956--48801995 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
48801946 ACATATTTAT
48801956 TTTGCTTGAACTTTCATTC
1 TTTGCTTGAACTTTCATTC
48801975 TTTGCTTTGAA-TTTC-TTC
1 TTTGC-TTGAACTTTCATTC
48801993 TTT
1 TTT
48801996 TCGTTCCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 6 0.30
19 9 0.45
20 5 0.25
ACGTcount: A:0.12, C:0.17, G:0.10, T:0.60
Consensus pattern (19 bp):
TTTGCTTGAACTTTCATTC
Found at i:48809902 original size:6 final size:6
Alignment explanation
Indices: 48809893--48809923 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
48809883 AGTGAGATGG
*
48809893 ACAAGG ACAAGA ACAAGA ACAAGA ACAAGA A
1 ACAAGA ACAAGA ACAAGA ACAAGA ACAAGA A
48809924 AGAACATGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.65, C:0.16, G:0.19, T:0.00
Consensus pattern (6 bp):
ACAAGA
Found at i:48810850 original size:12 final size:12
Alignment explanation
Indices: 48810820--48810850 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
48810810 TCTGGGTTTC
48810820 TTTTTTTCTTTT
1 TTTTTTTCTTTT
*
48810832 TCTTTTTCTTTT
1 TTTTTTTCTTTT
48810844 TTTTTTT
1 TTTTTTT
48810851 GGCTTCTTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTTTCTTTT
Found at i:48811992 original size:21 final size:22
Alignment explanation
Indices: 48811966--48812030 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
48811956 CTATCTAATT
*
48811966 TTTCCTCTC-TAATCCTCTCAA
1 TTTCCTCTCAAAATCCTCTCAA
* *
48811987 TTTCCTTTCAAAATTCTCTCAA
1 TTTCCTCTCAAAATCCTCTCAA
*
48812009 TTTCCT-TCCAAAATTCTCTCAA
1 TTTCCTCT-CAAAATCCTCTCAA
48812031 ACTCATATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
21 9 0.23
22 30 0.77
ACGTcount: A:0.25, C:0.32, G:0.00, T:0.43
Consensus pattern (22 bp):
TTTCCTCTCAAAATCCTCTCAA
Found at i:48812007 original size:22 final size:22
Alignment explanation
Indices: 48811980--48812030 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
48811970 CTCTCTAATC
*
48811980 CTCTCAATTTCCTTTCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
48812002 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
48812024 CTCTCAA
1 CTCTCAA
48812031 ACTCATATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.27, C:0.31, G:0.00, T:0.41
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATT
Found at i:48812119 original size:30 final size:31
Alignment explanation
Indices: 48812085--48812151 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
48812075 CTCTCAAATC
48812085 TATTTTTT-AAAATAATTATAAATTTTTTTA
1 TATTTTTTAAAAATAATTATAAATTTTTTTA
*
48812115 TATTTTTTAAAAATAATTTTAAATTTTTTTA
1 TATTTTTTAAAAATAATTATAAATTTTTTTA
48812146 TATTTT
1 TATTTT
48812152 CATCAATGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 8 0.23
31 27 0.77
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (31 bp):
TATTTTTTAAAAATAATTATAAATTTTTTTA
Found at i:48813921 original size:18 final size:18
Alignment explanation
Indices: 48813900--48813934 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
48813890 AGGTATGTTT
* *
48813900 CCTAGCCCTTATATGTAA
1 CCTAACCCTTACATGTAA
48813918 CCTAACCCTTACATGTA
1 CCTAACCCTTACATGTA
48813935 TCCTTTTCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (18 bp):
CCTAACCCTTACATGTAA
Found at i:48814363 original size:25 final size:26
Alignment explanation
Indices: 48814334--48814382 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
48814324 TTTAAATTTA
48814334 TTATTTGATGTAATA-AAATAGAAGT
1 TTATTTGATGTAATACAAATAGAAGT
*
48814359 TTATTTGATGTAATACGAATAGAA
1 TTATTTGATGTAATACAAATAGAA
48814383 ATTTTTGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.43, C:0.02, G:0.16, T:0.39
Consensus pattern (26 bp):
TTATTTGATGTAATACAAATAGAAGT
Found at i:48814486 original size:18 final size:18
Alignment explanation
Indices: 48814423--48814486 Score: 55
Period size: 18 Copynumber: 3.7 Consensus size: 18
48814413 TATAATAAAA
*
48814423 TAAAAACCCTAATTTAAT
1 TAAAAACCCTAACTTAAT
* * *
48814441 TGAAAACCCTAACCTAACC
1 TAAAAACCCTAACTTAA-T
48814460 T---AA-CCTAACTTAAT
1 TAAAAACCCTAACTTAAT
48814474 TAAAAACCCTAAC
1 TAAAAACCCTAAC
48814487 CCTAACCTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 10
0.69 0.12 0.20
Matches are distributed among these distances:
14 1 0.03
15 9 0.26
16 2 0.06
17 2 0.06
18 20 0.57
19 1 0.03
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.25
Consensus pattern (18 bp):
TAAAAACCCTAACTTAAT
Found at i:48814493 original size:29 final size:29
Alignment explanation
Indices: 48814453--48814892 Score: 621
Period size: 29 Copynumber: 14.8 Consensus size: 29
48814443 AAAACCCTAA
48814453 CCTAA-CCTAACCTAACTTAATTAAAAAC
1 CCTAACCCTAACCTAACTTAATTAAAAAC
*
48814481 CCTAACCCTAACCTAAATTAATTAAAAAC
1 CCTAACCCTAACCTAACTTAATTAAAAAC
* *
48814510 CCTAACCCTAACCTAACCTAAATAAAAAC
1 CCTAACCCTAACCTAACTTAATTAAAAAC
*
48814539 CCTAACCCTAACCTAACTTAACCCTAAACCCTAAC
1 CCTAACCCTAACCTAACTTAA--TTAAA----AAC
** *
48814574 CCTAACTGTAACCTAAATTAATTAAAAAC
1 CCTAACCCTAACCTAACTTAATTAAAAAC
*
48814603 CCTAACCCTAACCTAAATTAATTAAAAAC
1 CCTAACCCTAACCTAACTTAATTAAAAAC
48814632 CCTAACCCTAACCTAACTTAATTAAAAAC
1 CCTAACCCTAACCTAACTTAATTAAAAAC
*
48814661 CCTAACCCTAACCTAAATTAATTAAAAAC
1 CCTAACCCTAACCTAACTTAATTAAAAAC
*
48814690 CCTAACCCTAACCTAAATTAATTAAAAAC
1 CCTAACCCTAACCTAACTTAATTAAAAAC
* *
48814719 CCTAACCCTAACCTAACCTAACTAAAAAC
1 CCTAACCCTAACCTAACTTAATTAAAAAC
48814748 CCTAACCCTAACCTAACTTAATTAAAAAC
1 CCTAACCCTAACCTAACTTAATTAAAAAC
*
48814777 CCTAACCCTAACCCTAACCTAAATTAACTAAAAAC
1 CCTAACCCTAA-CCTAA-C----TTAATTAAAAAC
*
48814812 CCTAACCCTAACCTAAATTAATTAAAAAC
1 CCTAACCCTAACCTAACTTAATTAAAAAC
* *
48814841 CCTAACCCTAACCTAAATTAACTAAAAAC
1 CCTAACCCTAACCTAACTTAATTAAAAAC
48814870 CCTAACCCTAACCTAACTTAATT
1 CCTAACCCTAACCTAACTTAATT
48814893 TGATAAATTT
Statistics
Matches: 374, Mismatches: 25, Indels: 25
0.88 0.06 0.06
Matches are distributed among these distances:
28 5 0.01
29 307 0.82
30 5 0.01
31 5 0.01
33 4 0.01
34 5 0.01
35 43 0.11
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (29 bp):
CCTAACCCTAACCTAACTTAATTAAAAAC
Found at i:48814518 original size:6 final size:6
Alignment explanation
Indices: 48814507--48814579 Score: 55
Period size: 6 Copynumber: 12.5 Consensus size: 6
48814497 ATTAATTAAA
****
48814507 AACCCT AACCCT AA-CCT AA-CCT AAATAA AAACCCT AACCCT AA-CCT
1 AACCCT AACCCT AACCCT AACCCT AACCCT A-ACCCT AACCCT AACCCT
*
48814553 AA-CTT AACCCT AAACCCT AACCCT AAC
1 AACCCT AACCCT -AACCCT AACCCT AAC
48814580 TGTAACCTAA
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
5 19 0.35
6 27 0.50
7 8 0.15
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.18
Consensus pattern (6 bp):
AACCCT
Found at i:48814598 original size:122 final size:120
Alignment explanation
Indices: 48814444--48814892 Score: 667
Period size: 122 Copynumber: 3.8 Consensus size: 120
48814434 ATTTAATTGA
* *
48814444 AAACCCTAA-CCTAA-CCTAACCTAACTTAATTAAAAACCCTAACCCTAACCTAAATTAATTAAA
1 AAACCCTAACCCTAACCCTAACCTAAATTAATTAAAAACCCTAACCCTAACCTAAATTAACTAAA
* * *
48814507 AACCCTAACCCTAACCTAACCTAAATAAAAACCCTAACCCTAACCTAACTTAACCCT
66 AACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAA--AT
** *
48814564 AAACCCTAACCCTAACTGTAACCTAAATTAATTAAAAACCCTAACCCTAACCTAAATTAATTAAA
1 AAACCCTAACCCTAACCCTAACCTAAATTAATTAAAAACCCTAACCCTAACCTAAATTAACTAAA
* *
48814629 AACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAACCTAAATTAATT
66 AACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAAAT
**
48814684 AAA----AACCCTAACCCTAACCTAAATTAATTAAAAACCCTAACCCTAACCTAACCTAACTAAA
1 AAACCCTAACCCTAACCCTAACCTAAATTAATTAAAAACCCTAACCCTAACCTAAATTAACTAAA
*
48814745 AACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAACCCTAACCTAAAT
66 AACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA-CCTAACTTAAAT
* ***
48814801 TAACTAAAAACCCTAACCCTAACCTAAATTAATTAAAAACCCTAACCCTAACCTAAATTAACTAA
1 AAAC-CCTAACCCTAACCCTAACCTAAATTAATTAAAAACCCTAACCCTAACCTAAATTAACTAA
48814866 AAACCCTAACCCTAACCTAACTTAATT
65 AAACCCTAACCCTAACCTAACTTAATT
48814893 TGATAAATTT
Statistics
Matches: 303, Mismatches: 18, Indels: 14
0.90 0.05 0.04
Matches are distributed among these distances:
116 96 0.32
117 11 0.04
120 13 0.04
121 5 0.02
122 178 0.59
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (120 bp):
AAACCCTAACCCTAACCCTAACCTAAATTAATTAAAAACCCTAACCCTAACCTAAATTAACTAAA
AACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAAAT
Found at i:48814956 original size:56 final size:55
Alignment explanation
Indices: 48814890--48815218 Score: 468
Period size: 56 Copynumber: 5.9 Consensus size: 55
48814880 ACCTAACTTA
48814890 ATTTGATAAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTT
1 ATTTGATAAATTTTACTAACCATTAACACAATTTTTGG-CTTAATAATTTTAGTTT
* * **
48814946 ATTTCATAAATTTTACTAACCATTAATACAATTTTTGGCTTAATAATTTTA-CAT
1 ATTTGATAAATTTTACTAACCATTAACACAATTTTTGGCTTAATAATTTTAGTTT
* *
48815000 ATTTTGAT-AATTTTACTAACAATTAACACAATTTCTGGACTTAATAATTTTAGTTT
1 A-TTTGATAAATTTTACTAACCATTAACACAATTTTTGG-CTTAATAATTTTAGTTT
* * * **
48815056 ATTTCATAAATTTTATTAACCATTAATACAATTTTTGGCTTAATAATTTTA-CAT
1 ATTTGATAAATTTTACTAACCATTAACACAATTTTTGGCTTAATAATTTTAGTTT
48815110 ATTTTGAT-AATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTT
1 A-TTTGATAAATTTTACTAACCATTAACACAATTTTTGG-CTTAATAATTTTAGTTT
48815166 ATTTGATAAATTTTACTAACCATTAACACAATTTTTTTGGCTTAATAATTTTA
1 ATTTGATAAATTTTACTAACCATTAACACAA--TTTTTGGCTTAATAATTTTA
48815219 CATAATGTTA
Statistics
Matches: 241, Mismatches: 22, Indels: 19
0.85 0.08 0.07
Matches are distributed among these distances:
54 59 0.24
55 73 0.30
56 89 0.37
57 13 0.05
58 7 0.03
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (55 bp):
ATTTGATAAATTTTACTAACCATTAACACAATTTTTGGCTTAATAATTTTAGTTT
Found at i:48815050 original size:110 final size:110
Alignment explanation
Indices: 48814891--48815222 Score: 592
Period size: 110 Copynumber: 3.0 Consensus size: 110
48814881 CCTAACTTAA
48814891 TTTGATAAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTTATTTCATAAA
1 TTTGAT-AATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTTATTTCATAAA
48814956 TTTTACTAACCATTAATACAATTTTTGGCTTAATAATTTTACATAT
65 TTTTACTAACCATTAATACAATTTTTGGCTTAATAATTTTACATAT
* *
48815002 TTTGATAATTTTACTAACAATTAACACAATTTCTGGACTTAATAATTTTAGTTTATTTCATAAAT
1 TTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTTATTTCATAAAT
*
48815067 TTTATTAACCATTAATACAATTTTTGGCTTAATAATTTTACATAT
66 TTTACTAACCATTAATACAATTTTTGGCTTAATAATTTTACATAT
*
48815112 TTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTTATTTGATAAAT
1 TTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTTATTTCATAAAT
*
48815177 TTTACTAACCATTAACACAATTTTTTTGGCTTAATAATTTTACATA
66 TTTACTAACCATTAATACAA--TTTTTGGCTTAATAATTTTACATA
48815223 ATGTTAGATT
Statistics
Matches: 211, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
110 181 0.86
111 6 0.03
112 24 0.11
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (110 bp):
TTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTTATTTCATAAAT
TTTACTAACCATTAATACAATTTTTGGCTTAATAATTTTACATAT
Found at i:48818912 original size:40 final size:40
Alignment explanation
Indices: 48818828--48819052 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
48818818 TTGAATGATG
* * *
48818828 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
48818867 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
48818908 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
48818947 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
*
48818988 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
48819026 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
48819053 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.21
40 113 0.70
41 13 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:48821878 original size:125 final size:126
Alignment explanation
Indices: 48821559--48821912 Score: 606
Period size: 125 Copynumber: 2.8 Consensus size: 126
48821549 CTCAAACTTG
48821559 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
*
48821624 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACAAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACATCAACAAAAAAATTATTTCTTACATGAC
* * *
48821685 CTACTGTAGCAAAATCGTGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATTCTCG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
*
48821750 TAGAAACGATTTTATACTATTTGCTCAGAAACATCAGA-AAAAAAA-TATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACATCA-ACAAAAAAATTATTTCTTACATGAC
*
48821810 CTACTGTAGCAAAATCGCATCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
*
48821875 TAGAAGCGATTTTATACTATTTGAC-CAGAAACGTCAAC
66 TAGAAGCGATTTTATACTATTTG-CTCAGAAACATCAAC
48821913 TTGAAATAAT
Statistics
Matches: 214, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
124 1 0.00
125 108 0.50
126 104 0.49
127 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (126 bp):
CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAAGCGATTTTATACTATTTGCTCAGAAACATCAACAAAAAAATTATTTCTTACATGAC
Found at i:48823931 original size:21 final size:19
Alignment explanation
Indices: 48823907--48823987 Score: 58
Period size: 21 Copynumber: 4.1 Consensus size: 19
48823897 AAAAATCAAT
48823907 AAAATATATAAAATTTTAATA
1 AAAAT-TATAAAATTTT-ATA
** *
48823928 AAAATATATATAAATTAGAAAA
1 AAAAT-TATA-AAATT-TTATA
**
48823950 AAAATTA-AAAAAATTAT-
1 AAAATTATAAAATTTTATA
48823967 AAAATTATAAAATTTTATA
1 AAAATTATAAAATTTTATA
48823986 AA
1 AA
48823988 GTCGTAAGAA
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
17 7 0.15
18 9 0.20
19 5 0.11
20 1 0.02
21 12 0.26
22 12 0.26
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (19 bp):
AAAATTATAAAATTTTATA
Found at i:48824018 original size:20 final size:20
Alignment explanation
Indices: 48823993--48824047 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 20
48823983 ATAAAGTCGT
48823993 AAGAAAAATATAAAAATATA
1 AAGAAAAATATAAAAATATA
*
48824013 AAG--AAATATAAAATTTATA
1 AAGAAAAATATAAAA-ATATA
*
48824032 AA-AACAATTATAAAAA
1 AAGAA-AAATATAAAAA
48824048 CTATTGTACC
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
18 10 0.36
19 6 0.21
20 3 0.11
21 9 0.32
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.24
Consensus pattern (20 bp):
AAGAAAAATATAAAAATATA
Found at i:48824251 original size:19 final size:19
Alignment explanation
Indices: 48824218--48824320 Score: 70
Period size: 19 Copynumber: 5.4 Consensus size: 19
48824208 GTTAAAGGGT
*
48824218 TTTTTTATG-TATTTTATAC
1 TTTTTTATGAT-TTTTATAA
48824237 TTTTTTATGATTTTTATAAAA
1 TTTTTTATGATTTTTAT--AA
* * *
48824258 ATTTTCA--ATTTTTATAG
1 TTTTTTATGATTTTTATAA
* *
48824275 TTTTTTACGATTTTTATAT
1 TTTTTTATGATTTTTATAA
* *
48824294 TTTTTTCTAATTTTTA-AA
1 TTTTTTATGATTTTTATAA
48824312 TATTTTTAT
1 T-TTTTTAT
48824321 TAATATTTAA
Statistics
Matches: 66, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
17 6 0.09
18 2 0.03
19 51 0.77
20 1 0.02
21 6 0.09
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (19 bp):
TTTTTTATGATTTTTATAA
Found at i:48824324 original size:20 final size:20
Alignment explanation
Indices: 48824290--48824360 Score: 56
Period size: 19 Copynumber: 3.5 Consensus size: 20
48824280 TACGATTTTT
*
48824290 ATATTTTTTTCTAATTTTTAA
1 ATATTTTTAT-TAATTTTTAA
*
48824311 ATATTTTTATTAATATTT-A
1 ATATTTTTATTAATTTTTAA
* * *
48824330 ATAATATTTA-TAAATTTTAT
1 AT-ATTTTTATTAATTTTTAA
*
48824350 TTATTTTTATT
1 ATATTTTTATT
48824361 TTTTATAATT
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
19 15 0.38
20 15 0.38
21 9 0.23
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (20 bp):
ATATTTTTATTAATTTTTAA
Found at i:48828972 original size:20 final size:21
Alignment explanation
Indices: 48828941--48828993 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
48828931 ATAATTACGT
*
48828941 TTATTTTCTTTAAATTAA-GAG
1 TTATTTT-TTTAAATTAATGAA
*
48828962 TTATTTTTTTAACTTAATGAA
1 TTATTTTTTTAAATTAATGAA
*
48828983 TTATTTATTTA
1 TTATTTTTTTA
48828994 TTTTATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 9 0.32
21 19 0.68
ACGTcount: A:0.32, C:0.04, G:0.06, T:0.58
Consensus pattern (21 bp):
TTATTTTTTTAAATTAATGAA
Found at i:48831872 original size:43 final size:43
Alignment explanation
Indices: 48831782--48832071 Score: 241
Period size: 43 Copynumber: 6.8 Consensus size: 43
48831772 CTGCTAAAAG
* * ** * * *
48831782 TCATGACCTTTAGTGGCGCTTT-TACAAAAACGCCGCTAAAGG
1 TCATGACTTTTAGCGGCGCTTTGCCCACAAACGCCGCTATAGA
* * *
48831824 TCATGACTTTTAGCGGCGCTTAGCCCACGAATGCCGCTATAGA
1 TCATGACTTTTAGCGGCGCTTTGCCCACAAACGCCGCTATAGA
*
48831867 TCATGACTTTTAGCGGCGCTTTTG-CCACAAACGCCGCTATAGG
1 TCATGACTTTTAGCGGCGC-TTTGCCCACAAACGCCGCTATAGA
* * * *
48831910 TCATGAATTTTAGTGACGCTTTTCCCACAAACGCCGCTATAGA
1 TCATGACTTTTAGCGGCGCTTTGCCCACAAACGCCGCTATAGA
* * * * *
48831953 TCATCACTTTTAGCAGCGTTTTTCCCATAAACGCCGCTATAGA
1 TCATGACTTTTAGCGGCGCTTTGCCCACAAACGCCGCTATAGA
* * * ** *
48831996 ACA-GA-TCTTTAGCGACGCTTTTTCATACAAACGCTGCTATAGA
1 TCATGACT-TTTAGCGGCGC-TTTGCCCACAAACGCCGCTATAGA
* * * *
48832039 ACA-GACCTTTAGCGGCACTTT-CACACAAACGCC
1 TCATGACTTTTAGCGGCGCTTTGCCCACAAACGCC
48832072 ACTAAAAATA
Statistics
Matches: 202, Mismatches: 40, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
41 11 0.05
42 34 0.17
43 154 0.76
44 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (43 bp):
TCATGACTTTTAGCGGCGCTTTGCCCACAAACGCCGCTATAGA
Found at i:48831962 original size:129 final size:128
Alignment explanation
Indices: 48831781--48832037 Score: 293
Period size: 129 Copynumber: 2.0 Consensus size: 128
48831771 ACTGCTAAAA
* * * * *
48831781 GTCATGACCTTTAGTGGCGCTTTTACAAAAACGCCGCTAAAGGTCATGACTTTTAGCGGCGCTTA
1 GTCATGAACTTTAGTGACGCTTTTACAAAAACGCCGCTAAAGATCATCACTTTTAGCAGCGCTTA
* * * *
48831846 GCCCACGAATGCCGCTATAGATCATGA-CTTTTAGCGGCGCTTTTGC-CACAAACGCCGCTATAG
66 GCCCACAAACGCCGCTATAGAACA-GATC-TTTAGCGACGCTTTTGCACACAAACGCCGCTATAG
* * * * *
48831909 GTCATGAATTTTAGTGACGCTTTTCCCACAAACGCCGCTATAGATCATCACTTTTAGCAGCGTTT
1 GTCATGAACTTTAGTGACGCTTTT-ACAAAAACGCCGCTAAAGATCATCACTTTTAGCAGCGCTT
** * * * *
48831974 TTCCCATAAACGCCGCTATAGAACAGATCTTTAGCGACGCTTTTTCATACAAACGCTGCTATAG
65 AGCCCACAAACGCCGCTATAGAACAGATCTTTAGCGACGCTTTTGCACACAAACGCCGCTATAG
48832038 AACAGACCTT
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
128 38 0.36
129 68 0.64
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (128 bp):
GTCATGAACTTTAGTGACGCTTTTACAAAAACGCCGCTAAAGATCATCACTTTTAGCAGCGCTTA
GCCCACAAACGCCGCTATAGAACAGATCTTTAGCGACGCTTTTGCACACAAACGCCGCTATAG
Found at i:48836975 original size:6 final size:6
Alignment explanation
Indices: 48836942--48836983 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
48836932 AAAAATACAC
*
48836942 ATTTTA ATTTTT -TTTCTT ATTATTT ATTTTT ATTTTT ATTTT
1 ATTTTT ATTTTT ATTT-TT ATT-TTT ATTTTT ATTTTT ATTTT
48836984 GCAGGGAGAC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
5 3 0.09
6 21 0.66
7 7 0.22
8 1 0.03
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:48842352 original size:23 final size:23
Alignment explanation
Indices: 48842326--48842398 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
48842316 AGTGCCACAT
48842326 TGATATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
48842349 TGATATGTAGCCGTAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
* *
48842372 TAAAATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
48842395 TGAT
1 TGAT
48842399 CAATAACACT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (23 bp):
TGATATGTAGCCGAAGCTACCAC
Found at i:48842498 original size:8 final size:8
Alignment explanation
Indices: 48842485--48842513 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
48842475 ACCCGGGGCT
48842485 CACTGTAA
1 CACTGTAA
48842493 CACTGTAA
1 CACTGTAA
48842501 CACTGTAA
1 CACTGTAA
48842509 CACTG
1 CACTG
48842514 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:48844397 original size:50 final size:50
Alignment explanation
Indices: 48844282--48844477 Score: 284
Period size: 50 Copynumber: 3.9 Consensus size: 50
48844272 GATCATAACA
* * ** *
48844282 TGCCAAAGTCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * **
48844333 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
48844383 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
48844433 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCAT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
48844478 GATCTCAAGG
Statistics
Matches: 130, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 98 0.75
51 32 0.25
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:48846609 original size:6 final size:7
Alignment explanation
Indices: 48846590--48846621 Score: 50
Period size: 6 Copynumber: 4.9 Consensus size: 7
48846580 CTCCAAATCT
48846590 TAAACCC
1 TAAACCC
48846597 TAAACCC
1 TAAACCC
48846604 -AAACCC
1 TAAACCC
48846610 -AAACCC
1 TAAACCC
48846616 TAAACC
1 TAAACC
48846622 ATACACAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 12 0.50
7 12 0.50
ACGTcount: A:0.47, C:0.44, G:0.00, T:0.09
Consensus pattern (7 bp):
TAAACCC
Found at i:48846676 original size:21 final size:20
Alignment explanation
Indices: 48846650--48846688 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
48846640 TTTAATCTGA
48846650 AACCCCAAACCCCAAACCTCT
1 AACCCCAAA-CCCAAACCTCT
*
48846671 AACCCCTAACCCAAACCT
1 AACCCCAAACCCAAACCT
48846689 TAAATCCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.38, C:0.51, G:0.00, T:0.10
Consensus pattern (20 bp):
AACCCCAAACCCAAACCTCT
Found at i:48846701 original size:20 final size:20
Alignment explanation
Indices: 48846660--48846698 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
48846650 AACCCCAAAC
*
48846660 CCCAAACCTCTAACCCCTAA
1 CCCAAACCTCTAAACCCTAA
*
48846680 CCCAAACCT-TAAATCCTAA
1 CCCAAACCTCTAAACCCTAA
48846699 ACCATTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.18
Consensus pattern (20 bp):
CCCAAACCTCTAAACCCTAA
Found at i:48847493 original size:41 final size:40
Alignment explanation
Indices: 48847421--48847738 Score: 242
Period size: 41 Copynumber: 7.8 Consensus size: 40
48847411 AAATGTTTTT
48847421 GCGGCGCTTTT-CAAAAACGCCGCTAAAGCCCCGAGCATTA
1 GCGGCG-TTTTCCAAAAACGCCGCTAAAGCCCCGAGCATTA
* * *
48847461 GCGGCGTTTTCCAAGAAGCGCCACTATAGCCCCGAGCATTA
1 GCGGCGTTTTCCAA-AAACGCCGCTAAAGCCCCGAGCATTA
* ** *
48847502 GCGGCATTTTCCAAGAAGTGCCGCTATAGCCCCGAGCATTA
1 GCGGCGTTTTCCAA-AAACGCCGCTAAAGCCCCGAGCATTA
* * * * *
48847543 GCGGCGCTTTTTCAAAAACGTCGTTAAATCCTCGAGCATTA
1 GCGGCG-TTTTCCAAAAACGCCGCTAAAGCCCCGAGCATTA
*** * *
48847584 GCGGCGTTTTTTTGGAAAATGCCGCTAAAGGCCCGAGCATTA
1 GCGGCG--TTTTCCAAAAACGCCGCTAAAGCCCCGAGCATTA
* * * ***
48847626 GTGGCGCTTTTTCAAAAACGTCGCTAAAGGATCGAGCATTA
1 GCGGCG-TTTTCCAAAAACGCCGCTAAAGCCCCGAGCATTA
* ** * * * **
48847667 GCGGCACTTTTTTAAAAACACCACTAAAGACTGGAGCATTA
1 GCGGC-GTTTTCCAAAAACGCCGCTAAAGCCCCGAGCATTA
* * *
48847708 GCGGCGCTTTTCTAAAAGCGCCACTAAAGCC
1 GCGGCG-TTTTCCAAAAACGCCGCTAAAGCC
48847739 TCGAAAGGTC
Statistics
Matches: 226, Mismatches: 46, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
39 4 0.02
40 9 0.04
41 175 0.77
42 38 0.17
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
GCGGCGTTTTCCAAAAACGCCGCTAAAGCCCCGAGCATTA
Found at i:48847678 original size:83 final size:82
Alignment explanation
Indices: 48847428--48847742 Score: 289
Period size: 82 Copynumber: 3.8 Consensus size: 82
48847418 TTTGCGGCGC
* * * * * * *
48847428 TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCG-TTTTCCAAGAAGCGCCACTATAGCC
1 TTTTCCAAAATGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTTTCAA-AAACGTCGCTAAAGCC
*
48847492 CCGAGCATTAGCGGCA--
65 TCGAGCATTAGCGGCATT
* * *
48847508 TTTTCCAAGAAGTGCCGCTATAGCCCCGAGCATTAGCGGCGCTTTTTCAAAAACGTCGTTAAATC
1 TTTTCCAA-AA-TGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTTTCAAAAACGTCGCTAAAGC
*
48847573 CTCGAGCATTAGCGGCGTTT
64 CTCGAGCATTAGCGGC-ATT
** * * **
48847593 TTTTGGAAAATGCCGCTAAAGGCCCGAGCATTAGTGGCGCTTTTTCAAAAACGTCGCTAAAGGAT
1 TTTTCCAAAATGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTTTCAAAAACGTCGCTAAAGCCT
48847658 CGAGCATTAGCGGCACTT
66 CGAGCATTAGCGGCA-TT
* ** * * ** * * *
48847676 TTTT-AAAAACACCACTAAAGACTGGAGCATTAGCGGCGC-TTTTCTAAAAGCGCCACTAAAGCC
1 TTTTCCAAAATGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTTTC-AAAAACGTCGCTAAAGCC
48847739 TCGA
65 TCGA
48847743 AAGGTCAGAA
Statistics
Matches: 192, Mismatches: 35, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
80 7 0.04
81 7 0.04
82 95 0.49
83 75 0.39
84 2 0.01
85 6 0.03
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (82 bp):
TTTTCCAAAATGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTTTCAAAAACGTCGCTAAAGCCT
CGAGCATTAGCGGCATT
Found at i:48849032 original size:3 final size:3
Alignment explanation
Indices: 48849024--48849054 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
48849014 GGCGATGGCA
48849024 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
48849055 GCCGAAACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:48850263 original size:45 final size:45
Alignment explanation
Indices: 48850199--48850290 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
48850189 CTACATACCC
48850199 ATATTAATAACATATTGTCGCTTCTCATCCTTGTGGAATTAGCCT
1 ATATTAATAACATATTGTCGCTTCTCATCCTTGTGGAATTAGCCT
48850244 ATATTAATAACATATTGTCGCTTCTCATCCTTGTGGAATTAGCCT
1 ATATTAATAACATATTGTCGCTTCTCATCCTTGTGGAATTAGCCT
48850289 AT
1 AT
48850291 GTAATTTGAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (45 bp):
ATATTAATAACATATTGTCGCTTCTCATCCTTGTGGAATTAGCCT
Found at i:48850665 original size:86 final size:86
Alignment explanation
Indices: 48850520--48850773 Score: 490
Period size: 86 Copynumber: 3.0 Consensus size: 86
48850510 CATCCTAGGC
48850520 CTATCTCTCGTACATGGATGTGCCATCAATTTGGACTATTAGCTTACAGTACCAAAATGCTTCAA
1 CTATCTCTCGTACATGGATGTGCCATCAATTTGGACTATTAGCTTACAGTACCAAAATGCTTCAA
48850585 TACATGACTTGAATGTCCAAA
66 TACATGACTTGAATGTCCAAA
*
48850606 CTATCTCTCGTACATGGATGTGCCATCAATTTGGACTATTAGCTTACAATACCAAAATGCTTCAA
1 CTATCTCTCGTACATGGATGTGCCATCAATTTGGACTATTAGCTTACAGTACCAAAATGCTTCAA
48850671 TACATGACTTGAATGTCCAAA
66 TACATGACTTGAATGTCCAAA
48850692 CTATCTCTCGTACATGGATGTGCCATCAATTTGGACTATTAGCTTACAGTACCAAAATGCTTCAA
1 CTATCTCTCGTACATGGATGTGCCATCAATTTGGACTATTAGCTTACAGTACCAAAATGCTTCAA
*
48850757 TACATTACTTGAATGTC
66 TACATGACTTGAATGTC
48850774 AAAAAAAGAC
Statistics
Matches: 165, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 165 1.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (86 bp):
CTATCTCTCGTACATGGATGTGCCATCAATTTGGACTATTAGCTTACAGTACCAAAATGCTTCAA
TACATGACTTGAATGTCCAAA
Found at i:48852725 original size:18 final size:18
Alignment explanation
Indices: 48852681--48852730 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
48852671 ATTATCGGTT
48852681 TCAACTTCCTCTTCGTTC
1 TCAACTTCCTCTTCGTTC
** *
48852699 TCATTTTCCTCTTTGTTC
1 TCAACTTCCTCTTCGTTC
*
48852717 TCAACTTCCCCTTC
1 TCAACTTCCTCTTC
48852731 ATTATCAACC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.10, C:0.38, G:0.04, T:0.48
Consensus pattern (18 bp):
TCAACTTCCTCTTCGTTC
Found at i:48861591 original size:18 final size:18
Alignment explanation
Indices: 48861570--48861605 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
48861560 CGGTTCCATG
48861570 TCTATCCTAAGTTCTACA
1 TCTATCCTAAGTTCTACA
48861588 TCTATCCTAAGTTCTACA
1 TCTATCCTAAGTTCTACA
48861606 GGACGACGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.06, T:0.39
Consensus pattern (18 bp):
TCTATCCTAAGTTCTACA
Found at i:48861974 original size:18 final size:18
Alignment explanation
Indices: 48861951--48861989 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
48861941 TTAAAAATAA
48861951 TTTATGTAGATCTGAATT
1 TTTATGTAGATCTGAATT
*
48861969 TTTATGTAGATCTGGATT
1 TTTATGTAGATCTGAATT
48861987 TTT
1 TTT
48861990 GTGATGAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.05, G:0.18, T:0.54
Consensus pattern (18 bp):
TTTATGTAGATCTGAATT
Found at i:48862217 original size:19 final size:20
Alignment explanation
Indices: 48862195--48862241 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
48862185 AAAAAACTTA
48862195 TATATTAATTAA-AATTTAC
1 TATATTAATTAAGAATTTAC
* *
48862214 TATATTTATTAAGTATTTTAC
1 TATATTAATTAAG-AATTTAC
48862235 TATATTA
1 TATATTA
48862242 TTGAAGTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 11 0.48
21 12 0.52
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (20 bp):
TATATTAATTAAGAATTTAC
Found at i:48862242 original size:20 final size:22
Alignment explanation
Indices: 48862209--48862249 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
48862199 TTAATTAAAA
48862209 TTTACTATATTTATT-AAGTAT
1 TTTACTATATTTATTGAAGTAT
48862230 TTTACTATA-TTATTGAAGTA
1 TTTACTATATTTATTGAAGTA
48862250 ATATGAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (22 bp):
TTTACTATATTTATTGAAGTAT
Found at i:48862566 original size:16 final size:16
Alignment explanation
Indices: 48862521--48862571 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
48862511 TGAATTAGTA
*
48862521 ATTATAGCTTTATTCC
1 ATTATAACTTTATTCC
* *
48862537 ATCATAA-TTCTATTTC
1 ATTATAACTT-TATTCC
48862553 ATTATAACTTTATTCC
1 ATTATAACTTTATTCC
48862569 ATT
1 ATT
48862572 TAAGTAAATC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 2 0.07
16 24 0.86
17 2 0.07
ACGTcount: A:0.29, C:0.18, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTATAACTTTATTCC
Found at i:48862820 original size:17 final size:18
Alignment explanation
Indices: 48862798--48862831 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
48862788 GTAGTTGATG
*
48862798 TAGATATTG-ATATTAAC
1 TAGATAATGAATATTAAC
48862815 TAGATAATGAATATTAA
1 TAGATAATGAATATTAA
48862832 TTAGGGTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (18 bp):
TAGATAATGAATATTAAC
Found at i:48866542 original size:20 final size:20
Alignment explanation
Indices: 48866525--48866563 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
48866515 TATTGATACT
*
48866525 TTTCTTAAGGTATCGATATA
1 TTTCCTAAGGTATCGATATA
48866545 TTTCCTAAGGTATCGATAT
1 TTTCCTAAGGTATCGATAT
48866564 TCCTGCTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (20 bp):
TTTCCTAAGGTATCGATATA
Found at i:48879040 original size:27 final size:27
Alignment explanation
Indices: 48879010--48879186 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
48879000 ATATTGAGTC
* * * *
48879010 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48879037 CGCACACTTAGTGC-ACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48879063 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
48879091 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48879118 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48879145 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48879172 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48879187 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 23 0.18
27 81 0.63
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48879175 original size:81 final size:81
Alignment explanation
Indices: 48879031--48879185 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 81
48879021 TGCTATATAA
* *
48879031 TCAACTCGCACACTTAGTGCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCAC
1 TCAACTCGCACACTTAGTGCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAACTCGCAC
48879096 ACTTAGTGCCGCATGG
66 ACTTAGTGCCGCATGG
* * **
48879112 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAA-TCGCA
1 TCAACTCGCACACTTAGTGCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAACTCGCA
48879176 CACTTAGTGC
65 CACTTAGTGC
48879186 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
81 35 0.52
82 32 0.48
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAACTCGCAC
ACTTAGTGCCGCATGG
Found at i:48886952 original size:27 final size:27
Alignment explanation
Indices: 48886922--48887099 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
48886912 ATATTGAGTC
* * * *
48886922 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48886949 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48886976 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* ** * *
48887004 CACACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48887031 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48887058 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48887085 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48887100 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48887061 original size:82 final size:81
Alignment explanation
Indices: 48886943--48887098 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
48886933 TGCTATATAA
* *
48886943 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCACA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCACA
48887008 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
48887025 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACA
48887089 CACTTAGTGC
65 CACTTAGTGC
48887099 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACAC
ACTTAGTGCCGCATGG
Found at i:48892423 original size:51 final size:49
Alignment explanation
Indices: 48892305--48892482 Score: 214
Period size: 51 Copynumber: 3.5 Consensus size: 49
48892295 GATGGTCATG
* * * *
48892305 TGTGTAGTACAATGTGCAGGCTACTACGTGTACCAGAAAGATAGGT-AGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TTGGTCA-CA
* * *
48892355 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TT-GGTCACA
*
48892406 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT--TGGTCACA
*
48892457 TGTGTAGTACTATGTGTAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
48892483 TGTGAACATG
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
50 37 0.33
51 72 0.65
52 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTGGTCACA
Found at i:48892561 original size:46 final size:44
Alignment explanation
Indices: 48892493--48892580 Score: 106
Period size: 46 Copynumber: 2.0 Consensus size: 44
48892483 TGTGAACATG
* *
48892493 TATCATTAATTATAAAGTGGTTGCTATGTTCTG-ATCTCACCGGA
1 TATCATTAATTACAAAGTGGTTGCTATGTGCTGAATC-CACCGGA
* *
48892537 TATCATTGATTACAAAGGGTGGTTGCTGTGTGCTGAATCCACCG
1 TATCATTAATTACAAA--GTGGTTGCTATGTGCTGAATCCACCG
48892581 TGTATTTGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
44 14 0.38
46 20 0.54
47 3 0.08
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (44 bp):
TATCATTAATTACAAAGTGGTTGCTATGTGCTGAATCCACCGGA
Found at i:48892756 original size:37 final size:38
Alignment explanation
Indices: 48892687--48892759 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
48892677 ATGCGTGGAA
* * *
48892687 TTGAATTTAATATTGACTTGAAAATGACAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
*
48892725 TTGAATTGAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAA
48892760 ATTATGACAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 17 0.55
38 14 0.45
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.33
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:48897899 original size:51 final size:51
Alignment explanation
Indices: 48897761--48897913 Score: 182
Period size: 50 Copynumber: 3.0 Consensus size: 51
48897751 ATGTGAAAGT
*
48897761 GAAAGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
1 GAAAGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
* * * * ***
48897812 GAAAG-AAAGGTCGCATGTGTAGTACTATGTACAGGCTACTACGTGTATTG
1 GAAAGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
* * * * *
48897862 GATAGTGATGGTCACATGTGTAGTACTATCTGTAGGCTACTATGTGAACCA
1 GAAAGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
48897913 G
1 G
48897914 TATCATTAAT
Statistics
Matches: 81, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
50 41 0.51
51 40 0.49
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (51 bp):
GAAAGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
Found at i:48905168 original size:29 final size:29
Alignment explanation
Indices: 48905126--48905182 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
48905116 CAAATGAAAA
48905126 AATCTCTCCAGTCCTATCTCTCTTCCAAG
1 AATCTCTCCAGTCCTATCTCTCTTCCAAG
*
48905155 AATCTCTTCAGTCCTATCTCTCTTCCAA
1 AATCTCTCCAGTCCTATCTCTCTTCCAA
48905183 TTCAGGGTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.21, C:0.37, G:0.05, T:0.37
Consensus pattern (29 bp):
AATCTCTCCAGTCCTATCTCTCTTCCAAG
Found at i:48908721 original size:28 final size:28
Alignment explanation
Indices: 48908690--48908809 Score: 98
Period size: 28 Copynumber: 4.2 Consensus size: 28
48908680 CTCGCCAAGT
* *
48908690 AGGCATCCTTTTAACAGAGTTTGCCAC-A
1 AGGCATCC-TTTAACAGAGATAGCCACAA
* * * *
48908718 AGGCATTCATTTAGCTGAGATAGGCACAA
1 AGGCA-TCCTTTAACAGAGATAGCCACAA
* *
48908747 AGGCATCCTTTAACAGAGATAGACATAA
1 AGGCATCCTTTAACAGAGATAGCCACAA
* * * *
48908775 AGACACCCTTTTAATAGAGATAGCTACAA
1 AGGCATCC-TTTAACAGAGATAGCCACAA
48908804 AGGCAT
1 AGGCAT
48908810 AATGTATTTG
Statistics
Matches: 70, Mismatches: 19, Indels: 5
0.74 0.20 0.05
Matches are distributed among these distances:
28 42 0.60
29 28 0.40
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (28 bp):
AGGCATCCTTTAACAGAGATAGCCACAA
Found at i:48908805 original size:29 final size:27
Alignment explanation
Indices: 48908734--48908805 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 27
48908724 TCATTTAGCT
* *
48908734 GAGATAGGCACAAAGGCATCCTTTAACA
1 GAGATA-GCACAAAGACACCCTTTAACA
* *
48908762 GAGATAGACATAAAGACACCCTTTTAATA
1 GAGATAG-CACAAAGACACCC-TTTAACA
48908791 GAGATAGCTACAAAG
1 GAGATAGC-ACAAAG
48908806 GCATAATGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
27 1 0.03
28 17 0.47
29 18 0.50
ACGTcount: A:0.43, C:0.18, G:0.19, T:0.19
Consensus pattern (27 bp):
GAGATAGCACAAAGACACCCTTTAACA
Found at i:48915726 original size:13 final size:13
Alignment explanation
Indices: 48915708--48915734 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
48915698 ATCTCAGGTA
48915708 ATTCTCATAATTG
1 ATTCTCATAATTG
48915721 ATTCTCATAATTG
1 ATTCTCATAATTG
48915734 A
1 A
48915735 GGCTCAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.44
Consensus pattern (13 bp):
ATTCTCATAATTG
Found at i:48936371 original size:20 final size:18
Alignment explanation
Indices: 48936343--48936397 Score: 69
Period size: 17 Copynumber: 3.0 Consensus size: 18
48936333 TAGTATTTTA
48936343 TTAATTTAATATTAAAGT
1 TTAATTTAATATTAAAGT
48936361 AATT-ATCTTAATATTAAA-T
1 --TTAAT-TTAATATTAAAGT
48936380 TTAATTTAATATTAAAGT
1 TTAATTTAATATTAAAGT
48936398 GTTTAAGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
17 13 0.41
18 3 0.09
19 3 0.09
20 13 0.41
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (18 bp):
TTAATTTAATATTAAAGT
Found at i:48948980 original size:13 final size:15
Alignment explanation
Indices: 48948962--48948993 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
48948952 ACTACCCTAG
48948962 CTTTTAAC-T-GAAA
1 CTTTTAACATAGAAA
48948975 CTTTTAACATAGAAA
1 CTTTTAACATAGAAA
48948990 CTTT
1 CTTT
48948994 AGATTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 1 0.06
15 8 0.47
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.41
Consensus pattern (15 bp):
CTTTTAACATAGAAA
Found at i:48970536 original size:40 final size:40
Alignment explanation
Indices: 48970438--48970607 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
48970428 TCCTCGTTCA
* * * *
48970438 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACA-T
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
48970477 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * *
48970517 AATGCCTTCGGGACTTAACCCAGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
48970557 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
48970597 AAGGCCTTCGG
1 AATGCCTTCGG
48970608 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 34 0.30
40 81 0.70
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:49005894 original size:24 final size:24
Alignment explanation
Indices: 49005866--49005917 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
49005856 TTTCTAGAAG
* *
49005866 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
*
49005890 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAGCATAATAT
49005914 ATTT
1 ATTT
49005918 GACTTACTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:49009011 original size:3 final size:3
Alignment explanation
Indices: 49009003--49009030 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
49008993 CTCTATGGGA
49009003 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
49009031 TGGGATACTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:49020769 original size:46 final size:45
Alignment explanation
Indices: 49020605--49020769 Score: 161
Period size: 46 Copynumber: 3.6 Consensus size: 45
49020595 GCTATGTGTT
* * * * * * *
49020605 GTGTAGGTTCAACCTTAATCGGTGACCAGACACAATTATCCGATTT
1 GTGTAGGTTCAACCCTAATGGGTGACC-GGCACTATTATTCAATTC
* * * *
49020651 GTGTATGTTTAAACCTAATGGGTGACAAGGCACTATTA-TCAAATTC
1 GTGTAGGTTCAACCCTAATGGGTGAC-CGGCACTATTATTC-AATTC
* * *
49020697 TTGTAGGTTCAACCTTAACGGGTGACCGTGCACTATTATTCAATTC
1 GTGTAGGTTCAACCCTAATGGGTGACCG-GCACTATTATTCAATTC
49020743 GTGTAGGTTCAACCCTAATGGGTGACC
1 GTGTAGGTTCAACCCTAATGGGTGACC
49020770 AATACTACTT
Statistics
Matches: 94, Mismatches: 21, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
45 2 0.02
46 90 0.96
47 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (45 bp):
GTGTAGGTTCAACCCTAATGGGTGACCGGCACTATTATTCAATTC
Found at i:49024114 original size:20 final size:20
Alignment explanation
Indices: 49024076--49024114 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
49024066 TTAAAAGTCT
*
49024076 AAAAAATATATATATTTAAG
1 AAAAAATATATATAATTAAG
* *
49024096 AAAAATTATATTTAATTAA
1 AAAAAATATATATAATTAA
49024115 AAATAAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
AAAAAATATATATAATTAAG
Found at i:49024440 original size:17 final size:19
Alignment explanation
Indices: 49024406--49024445 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
49024396 CATTTATTTT
49024406 AATA-TTTTTAATATATTA
1 AATATTTTTTAATATATTA
*
49024424 TATATTTTTTAA-A-ATTA
1 AATATTTTTTAATATATTA
49024441 AATAT
1 AATAT
49024446 AAAAATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 8 0.42
18 4 0.21
19 7 0.37
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
AATATTTTTTAATATATTA
Found at i:49025192 original size:5 final size:5
Alignment explanation
Indices: 49025178--49025207 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
49025168 TAAAATAAGG
49025178 AAATA TAAATA AAATA AAATA AAATA AAAT
1 AAATA -AAATA AAATA AAATA AAATA AAAT
49025208 TAGATTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
AAATA
Found at i:49026142 original size:23 final size:23
Alignment explanation
Indices: 49026092--49026140 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
49026082 AGATTTTTCC
49026092 TAAATATTATCACTAAATAATTG
1 TAAATATTATCACTAAATAATTG
49026115 TAAATATTATCACTAAATAATT-
1 TAAATATTATCACTAAATAATTG
49026137 TAAA
1 TAAA
49026141 ATTTAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATTG
Found at i:49026482 original size:26 final size:26
Alignment explanation
Indices: 49026446--49026498 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
49026436 TAATTTTTGA
* *
49026446 TACATTTTTGGCTTATCGATTGCAAT
1 TACATGTTTGGCTTATCAATTGCAAT
*
49026472 TACATGTTTGGCTTATCAATTGTAAT
1 TACATGTTTGGCTTATCAATTGCAAT
49026498 T
1 T
49026499 TTATTGTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.47
Consensus pattern (26 bp):
TACATGTTTGGCTTATCAATTGCAAT
Found at i:49026903 original size:44 final size:44
Alignment explanation
Indices: 49026826--49026909 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
49026816 CTATTGGTCA
* *
49026826 AGTATAAATAATTAATAATACATACTATGTAATTAGTTAAATTT
1 AGTATAAATAATTAATAATAAATACTATGTAATTAATTAAATTT
* * *
49026870 AGTATAATTAATTTATAATAAATA-TAATTTAATTAATTAA
1 AGTATAAATAATTAATAATAAATACT-ATGTAATTAATTAA
49026910 TTATTCAACA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.03
44 33 0.97
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (44 bp):
AGTATAAATAATTAATAATAAATACTATGTAATTAATTAAATTT
Found at i:49035074 original size:25 final size:26
Alignment explanation
Indices: 49035034--49035083 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
49035024 GTTGTAAATA
49035034 AAATAATATCTCTAGA-AATTTTCTG
1 AAATAATATCTCTAGAGAATTTTCTG
* *
49035059 AAATAATCTCTTTAGAGAATTTTCT
1 AAATAATATCTCTAGAGAATTTTCT
49035084 CTCTACAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (26 bp):
AAATAATATCTCTAGAGAATTTTCTG
Found at i:49037997 original size:17 final size:17
Alignment explanation
Indices: 49037975--49038008 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
49037965 GAAGCTTGAG
*
49037975 ATAGAGCTGTCGTTTTA
1 ATAGAGCTATCGTTTTA
49037992 ATAGAGCTATCGTTTTA
1 ATAGAGCTATCGTTTTA
49038009 CTCTTTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (17 bp):
ATAGAGCTATCGTTTTA
Found at i:49039355 original size:69 final size:69
Alignment explanation
Indices: 49039273--49039455 Score: 249
Period size: 69 Copynumber: 2.7 Consensus size: 69
49039263 CATTGACTTA
* * * * **
49039273 TACCTAAAATGGACAGCATTTAAGCACTAATTCGGACAACATTACTAACATACGGACAACACAAA
1 TACCAAAAATGGACAACATTTAAGCACTAATTTGGACAGCATTAAGAACATACGGACAACACAAA
*
49039338 TTTT
66 TTTG
* * * * *
49039342 TACCAAAAATGGACAACATTTAAGCACTAATTTGGATAGCATTAAGAACATTCGGACAGCATAGA
1 TACCAAAAATGGACAACATTTAAGCACTAATTTGGACAGCATTAAGAACATACGGACAACACAAA
49039407 TTTG
66 TTTG
*
49039411 TACCAAAAATGGACAACATTTAAGCACCAATTTGGACAGCATTAA
1 TACCAAAAATGGACAACATTTAAGCACTAATTTGGACAGCATTAA
49039456 TACATGCAAA
Statistics
Matches: 100, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 100 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (69 bp):
TACCAAAAATGGACAACATTTAAGCACTAATTTGGACAGCATTAAGAACATACGGACAACACAAA
TTTG
Found at i:49040723 original size:30 final size:31
Alignment explanation
Indices: 49040684--49040741 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
49040674 AAAATAACTA
* *
49040684 TTTCGACATTTTTTCACTTTAGCCCCTAAAG
1 TTTCGACATTTATTCAATTTAGCCCCTAAAG
*
49040715 TTTC-ACATTTATTCAATTTAGTCCCTA
1 TTTCGACATTTATTCAATTTAGCCCCTA
49040742 TTTCACAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.45
Consensus pattern (31 bp):
TTTCGACATTTATTCAATTTAGCCCCTAAAG
Found at i:49042197 original size:153 final size:152
Alignment explanation
Indices: 49041773--49042576 Score: 1087
Period size: 152 Copynumber: 5.3 Consensus size: 152
49041763 ATTTTGGCAA
* * *
49041773 TTTGTTCGTATTTTTTCCTAGATTTTATTACTTT-TA-AAAAATATACTATTTTCTAATTTTATT
1 TTTGTTCGTATTTTTTCCCAGATTTTATTACTTTCAATAAAAATATATTATTTTCTAATTTTATT
**
49041836 ATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGT-TTTTTTATTTAAATT
66 ATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAATAAATT
* *
49041900 AAAAAAAACCCTTATTTCGGCCA
131 TAAAAAAA-CCTTATTTCGGCCC
*
49041923 TTTGTTCGTATTTTTTTTTCCAGATTTTATTACTTTCAATAAAAATATATTATTTTC-ATATTTT
1 TTTGTTCGTA--TTTTTTCCCAGATTTTATTACTTTCAATAAAAATATATTATTTTCTA-ATTTT
* * * * *
49041987 ATTATTTTACATTATTTGAGTACATTATATTTGAAATGTATTAATTTAATGTATTTTTTAAATAA
63 ATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAATAA
49042052 ATTTAAAAAAACCTTATTTCGGCCC
128 ATTTAAAAAAACCTTATTTCGGCCC
49042077 TTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTCAATAAAAATATATTATTTTCTAATTTTAT
1 TTTGTTCGTA-TTTTTTCCCAGATTTTATTACTTTCAATAAAAATATATTATTTTCTAATTTTAT
*
49042142 TA-TTTACATTATTTTAGTAAATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAATAAAA
65 TATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAAT-AAA
49042206 TTTAAAAAAAATCCTTATTTCGG-CC
129 TTT-AAAAAAA-CCTTATTTCGGCCC
* * * *
49042231 -AT-TT-AT-TTTTTTCCCAGGTTTTATTAATTTCAATAAAAATATATTATTTTCGT-ATTTTAT
1 TTTGTTCGTATTTTTTCCCAGATTTTATTACTTTCAATAAAAATATATTATTTTC-TAATTTTAT
* * * *
49042291 TATTTTACATTATTTTAGTACATTATGTTTGAAATATATTAATTTACTGTGTTTTTGAAATAAAT
65 TATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAATAAAT
*
49042356 TTACAGAAAACCATTATTTCGGCCC
130 TTA-AAAAAACC-TTATTTCGGCCC
* * * *
49042381 TTTGTTCGTATTTTTTCCCCGAATTTTATTACTTT-TA-AAAAATATAATATTTT-AAATTTTAT
1 TTTGTTCGTATTTTTTCCCAG-ATTTTATTACTTTCAATAAAAATATATTATTTTCTAATTTTAT
* *
49042443 AATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTGTGTTTTTTTAAATAAA
65 TATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTG-TTTTTTAAATAAA
49042508 TTTAAAAAAAAACCTTATTTCGGCCC
129 TTT--AAAAAAACCTTATTTCGGCCC
* * *
49042534 TTTGTTCGTACTTTTTACCGGATTTTATTACTTTCAATAAAAA
1 TTTGTTCGTATTTTTTCCCAGATTTTATTACTTTCAATAAAAA
49042577 ACACACTAAA
Statistics
Matches: 580, Mismatches: 48, Indels: 48
0.86 0.07 0.07
Matches are distributed among these distances:
148 3 0.01
149 72 0.12
150 66 0.11
151 2 0.00
152 144 0.25
153 125 0.22
154 125 0.22
155 43 0.07
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.51
Consensus pattern (152 bp):
TTTGTTCGTATTTTTTCCCAGATTTTATTACTTTCAATAAAAATATATTATTTTCTAATTTTATT
ATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAATAAATT
TAAAAAAACCTTATTTCGGCCC
Found at i:49042424 original size:302 final size:303
Alignment explanation
Indices: 49041773--49042576 Score: 1133
Period size: 302 Copynumber: 2.6 Consensus size: 303
49041763 ATTTTGGCAA
** *
49041773 TTTGTTCGTATTTTTTCCTAG-ATTTTATTACTTTTAAAAAATATACTATTTTCTAATTTTATTA
1 TTTGTTCGTATTTTTTCCCCGAATTTTATTACTTTTAAAAAATATAATATTTTCTAATTTTATTA
**
49041837 TTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGT-TTTTTTATTTAAA-TT
66 TTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAATAAATTT
* * *
49041900 AAAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTTTTCCAGATTTTATTACTTTCAATAA
131 AAAAAAAAACCTTATTTCGGCCA--T-TTC-TATTTTTTTTCCCAGATTTTATTAATTTCAATAA
*
49041965 AAATATATTATTTTCATATTTTATTATTTTACATTATTTGAGTACATTATATTTGAAATGTATTA
192 AAATATATTATTTTCATATTTTATTATTTTACATTATTTGAGTACATTATATTTGAAATATATTA
*
49042030 ATTTAATGTATTTTTTAAATAAATTTAAAAAAACCTTATTTCGGCCC
257 ATTTAATGTATTTTTGAAATAAATTTAAAAAAACCTTATTTCGGCCC
* * *
49042077 TTTGTTCGTATTTTTTTCCC-AGATTTTATTACTTTCAATAAAAATATATTATTTTCTAATTTTA
1 TTTGTTCGTATTTTTTCCCCGA-ATTTTATTACTTT-TA-AAAAATATAATATTTTCTAATTTTA
*
49042141 TTA-TTTACATTATTTTAGTAAATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAATAAA
63 TTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAAT-AA
* *
49042205 ATTTAAAAAAAATCCTTATTTCGGCCA-TT-TA-TTTTTTTCCCAGGTTTTATTAATTTCAATAA
127 ATTTAAAAAAAAACCTTATTTCGGCCATTTCTATTTTTTTTCCCAGATTTTATTAATTTCAATAA
* * *
49042267 AAATATATTATTTTCGTATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATATATTA
192 AAATATATTATTTTCATATTTTATTATTTTACATTATTTGAGTACATTATATTTGAAATATATTA
* * *
49042332 ATTTACTGTGTTTTTGAAATAAATTTACAGAAAACCATTATTTCGGCCC
257 ATTTAATGTATTTTTGAAATAAATTTA-AAAAAACC-TTATTTCGGCCC
* *
49042381 TTTGTTCGTATTTTTTCCCCGAATTTTATTACTTTTAAAAAATATAATATTTT-AAATTTTATAA
1 TTTGTTCGTATTTTTTCCCCGAATTTTATTACTTTTAAAAAATATAATATTTTCTAATTTTATTA
*
49042445 TTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTGTGTTTTTTTAAATAAATT
66 TTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTG-TTTTTTAAATAAATT
* * * * * *
49042510 TAAAAAAAAACCTTATTTCGGCCCTTTGT-TCGTACTTTTTACCGGATTTTATTACTTTCAATAA
130 TAAAAAAAAACCTTATTTCGGCCATTTCTAT--T-TTTTTTCCCAGATTTTATTAATTTCAATAA
49042574 AAA
192 AAA
49042577 ACACACTAAA
Statistics
Matches: 448, Mismatches: 34, Indels: 33
0.87 0.07 0.06
Matches are distributed among these distances:
301 9 0.02
302 201 0.45
303 22 0.05
304 62 0.14
305 16 0.04
306 48 0.11
307 63 0.14
308 3 0.01
309 24 0.05
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.51
Consensus pattern (303 bp):
TTTGTTCGTATTTTTTCCCCGAATTTTATTACTTTTAAAAAATATAATATTTTCTAATTTTATTA
TTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAATAAATTT
AAAAAAAAACCTTATTTCGGCCATTTCTATTTTTTTTCCCAGATTTTATTAATTTCAATAAAAAT
ATATTATTTTCATATTTTATTATTTTACATTATTTGAGTACATTATATTTGAAATATATTAATTT
AATGTATTTTTGAAATAAATTTAAAAAAACCTTATTTCGGCCC
Found at i:49048338 original size:69 final size:69
Alignment explanation
Indices: 49048264--49048449 Score: 273
Period size: 69 Copynumber: 2.7 Consensus size: 69
49048254 CAGCATTGAC
* **
49048264 TTGTACCAAAAATGGACAGCATTTAAGCACTAATTTGGACAACATTACTAACATACGGACAACAC
1 TTGTACCAAAAATGGACAGCATTTAAGCACTAATTTGGACAGCATTAAGAACATACGGACAACAC
49048329 AAAT
66 AAAT
* * * * *
49048333 TTGTACAAAAAATGGACAACATTTAAGCACTAATTTGGATAGCATTAAGAACATTCGGACAACAT
1 TTGTACCAAAAATGGACAGCATTTAAGCACTAATTTGGACAGCATTAAGAACATACGGACAACAC
*
49048398 AGAT
66 AAAT
* *
49048402 TTGTACCAAAAATGGATAGCATTTAAGCACCAATTTGGACAGCATTAA
1 TTGTACCAAAAATGGACAGCATTTAAGCACTAATTTGGACAGCATTAA
49048450 TACATGCAAA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 103 1.00
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.25
Consensus pattern (69 bp):
TTGTACCAAAAATGGACAGCATTTAAGCACTAATTTGGACAGCATTAAGAACATACGGACAACAC
AAAT
Found at i:49049288 original size:43 final size:42
Alignment explanation
Indices: 49049231--49049338 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
49049221 CACTGCCATA
** *
49049231 TCCCAGATATGGTCTTACATGTTATAATATATCGATGCCACTT-
1 TCCCAGATATGGTCTTACATGAAATAATATA-CGATG-CAATTG
* * * *
49049274 TCCCAGAGAGGGTCTTACACGAAATCATATACGATGCAATTG
1 TCCCAGATATGGTCTTACATGAAATAATATACGATGCAATTG
49049316 TCCCAGATATGGTCTTACATGAA
1 TCCCAGATATGGTCTTACATGAA
49049339 GTCACACCTC
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
41 4 0.07
42 25 0.46
43 25 0.46
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (42 bp):
TCCCAGATATGGTCTTACATGAAATAATATACGATGCAATTG
Found at i:49056155 original size:17 final size:19
Alignment explanation
Indices: 49056133--49056172 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
49056123 TGTCCAAGTA
49056133 CTAGTT-AGTTT-ATTTTT
1 CTAGTTCAGTTTAATTTTT
49056150 CTAGTTCAGTTTAATTTTT
1 CTAGTTCAGTTTAATTTTT
49056169 -TAGT
1 CTAGT
49056173 ACAACAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 9 0.43
19 6 0.29
ACGTcount: A:0.20, C:0.07, G:0.12, T:0.60
Consensus pattern (19 bp):
CTAGTTCAGTTTAATTTTT
Found at i:49058939 original size:11 final size:11
Alignment explanation
Indices: 49058917--49058945 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
49058907 CACCTTCACC
49058917 CATTTA-TTTT
1 CATTTATTTTT
49058927 CATTTATTTTT
1 CATTTATTTTT
49058938 CATTTATT
1 CATTTATT
49058946 CAAACCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (11 bp):
CATTTATTTTT
Found at i:49061646 original size:56 final size:56
Alignment explanation
Indices: 49061579--49061692 Score: 149
Period size: 56 Copynumber: 2.0 Consensus size: 56
49061569 ATATCTAACA
*
49061579 TGGCTCACAAAGGAGCACACATAGAGA-CATATCATAGAGAGCTCGCATAGGGAGCT
1 TGGCTCACAAAGGAGCACACATAGA-ATCATATCACAGAGAGCTCGCATAGGGAGCT
* *** * *
49061635 TGGCTCGCAAAGGAGCTTGCATAGAATCTTATCACATAGAGCTCGCATAGGGAGCT
1 TGGCTCACAAAGGAGCACACATAGAATCATATCACAGAGAGCTCGCATAGGGAGCT
49061691 TG
1 TG
49061693 CTTAAAAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 1 0.02
56 49 0.98
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.20
Consensus pattern (56 bp):
TGGCTCACAAAGGAGCACACATAGAATCATATCACAGAGAGCTCGCATAGGGAGCT
Found at i:49061651 original size:17 final size:18
Alignment explanation
Indices: 49061619--49061653 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
49061609 ATCATAGAGA
*
49061619 GCTCGCATAGGGAGCTTG
1 GCTCGCATAAGGAGCTTG
49061637 GCTCGCA-AAGGAGCTTG
1 GCTCGCATAAGGAGCTTG
49061654 CATAGAATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.20, C:0.23, G:0.37, T:0.20
Consensus pattern (18 bp):
GCTCGCATAAGGAGCTTG
Found at i:49065534 original size:25 final size:26
Alignment explanation
Indices: 49065472--49065536 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
49065462 AGTTCTTCAA
* *
49065472 TGCTTTTGAAAAATGCTTTTGAAAAG
1 TGCTTTTGAAAAGTGCATTTGAAAAG
* * *
49065498 TGCTGTTAAAAAGTG-ATTTGAGAAG
1 TGCTTTTGAAAAGTGCATTTGAAAAG
49065523 TGCTTTTGAAAAGT
1 TGCTTTTGAAAAGT
49065537 TTGGTTTAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
25 20 0.62
26 12 0.38
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGCTTTTGAAAAGTGCATTTGAAAAG
Found at i:49065536 original size:13 final size:13
Alignment explanation
Indices: 49065472--49065536 Score: 78
Period size: 13 Copynumber: 5.1 Consensus size: 13
49065462 AGTTCTTCAA
*
49065472 TGCTTTTGAAAAA
1 TGCTTTTGAAAAG
49065485 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
49065498 TGCTGTTAAAAAG
1 TGCTTTTGAAAAG
* *
49065511 TG-ATTTGAGAAG
1 TGCTTTTGAAAAG
49065523 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
49065536 T
1 T
49065537 TTGGTTTAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
12 8 0.19
13 34 0.81
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:49075458 original size:13 final size:13
Alignment explanation
Indices: 49075440--49075464 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49075430 TGGAAAATAA
49075440 TGCAAATTCATTG
1 TGCAAATTCATTG
49075453 TGCAAATTCATT
1 TGCAAATTCATT
49075465 TAAGCTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (13 bp):
TGCAAATTCATTG
Found at i:49089450 original size:73 final size:74
Alignment explanation
Indices: 49089338--49089484 Score: 251
Period size: 73 Copynumber: 2.0 Consensus size: 74
49089328 GCACAAAAGT
* *
49089338 ATATATACAACCAAAGTACTAAAACATGCCCAAAGATTTGCAAAATGAGCATCCTATATA-TTGC
1 ATATATACAACCAAAGTACTAAAACATGCCCAAACATTTGCAAAATGAGCATCCTATATACATGC
49089402 CACAATTAA
66 CACAATTAA
* *
49089411 ATATTTACAACCAAAGTACTAAAACATGCCCAAACATTTGCAAAATGAGCATCCTATATACATGG
1 ATATATACAACCAAAGTACTAAAACATGCCCAAACATTTGCAAAATGAGCATCCTATATACATGC
49089476 CACAATTAA
66 CACAATTAA
49089485 CCACATTTCA
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
73 58 0.84
74 11 0.16
ACGTcount: A:0.45, C:0.21, G:0.10, T:0.24
Consensus pattern (74 bp):
ATATATACAACCAAAGTACTAAAACATGCCCAAACATTTGCAAAATGAGCATCCTATATACATGC
CACAATTAA
Found at i:49096934 original size:40 final size:40
Alignment explanation
Indices: 49096843--49097012 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
49096833 TCCTCGTTCA
* * * * *
49096843 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
49096882 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
49096922 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
49096962 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
49097002 AAGGCCTTCGG
1 AATGCCTTCGG
49097013 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:49104876 original size:40 final size:39
Alignment explanation
Indices: 49104743--49104964 Score: 203
Period size: 40 Copynumber: 5.6 Consensus size: 39
49104733 TCCTCGTTCA
* * * * *
49104743 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * *
49104782 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
49104821 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * *
49104860 GAATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* ** * * ** *
49104900 AAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
49104941 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
49104965 CAGCATTCAA
Statistics
Matches: 152, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
39 70 0.46
40 74 0.49
41 8 0.05
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:49104882 original size:79 final size:79
Alignment explanation
Indices: 49104741--49104911 Score: 218
Period size: 78 Copynumber: 2.2 Consensus size: 79
49104731 GCTCCTCGTT
* * * * *
49104741 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACCATGCCTTCGGGACGTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGA
49104806 TTTAACAACTCGCA
66 TTTAACAACTCGCA
* * *
49104820 C-AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACGAATGCCCTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACAC-AATGCCCTCGGGACGTAACCCGG
** *
49104884 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
*
49104899 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
49104912 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
78 34 0.44
79 34 0.44
80 10 0.13
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGA
TTTAACAACTCGCA
Found at i:49108250 original size:42 final size:41
Alignment explanation
Indices: 49108138--49108291 Score: 159
Period size: 42 Copynumber: 3.6 Consensus size: 41
49108128 TACTGTACCA
* * *
49108138 ATGCCATGTCCCAGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCC-GATATGGTCTTACACG-AAGTCTCATATCG
* * *
49108180 ATGCTAATAGCCCAACTATGGTCTTACACGAAGTCTCATATCG
1 ATGC-CATATCCCGA-TATGGTCTTACACGAAGTCTCATATCG
*
49108223 ATGCCATATCCCGGATATGGTCTTACAC-ATAGTCTCATATTG
1 ATGCCATATCCC-GATATGGTCTTACACGA-AGTCTCATATCG
*
49108265 ATGCCATATCCCTTATATGGTCTTACA
1 ATGCCATATCCC-GATATGGTCTTACA
49108292 TATAATTTCA
Statistics
Matches: 95, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 62 0.65
43 32 0.34
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCGATATGGTCTTACACGAAGTCTCATATCG
Found at i:49120454 original size:6 final size:6
Alignment explanation
Indices: 49120397--49120521 Score: 60
Period size: 6 Copynumber: 20.3 Consensus size: 6
49120387 AAGAAACATT
* * * * * *
49120397 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAAA ATCAG- GTGACAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
49120446 ATCAGA ATCAGA ATCAGA ATAAGA ATTAGGTG AT-AGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
*
49120495 ACCAGGCA A-CAGA ATCAGA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
49120522 GTGAATGCAA
Statistics
Matches: 90, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
5 6 0.07
6 72 0.80
7 8 0.09
8 4 0.04
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:49120459 original size:37 final size:37
Alignment explanation
Indices: 49120408--49120493 Score: 102
Period size: 37 Copynumber: 2.3 Consensus size: 37
49120398 TCAGAACTAG
* * *
49120408 AATCAAAATGAGAATTAGAATCAA-AATCAGGTGACAA
1 AATCAGAATCAGAATCAGAAT-AAGAATCAGGTGACAA
* * *
49120445 AATCAGAATCAGAATCAGAATAAGAATTAGGTGATAG
1 AATCAGAATCAGAATCAGAATAAGAATCAGGTGACAA
49120482 AATCAGAATCAG
1 AATCAGAATCAG
49120494 TACCAGGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
36 2 0.05
37 40 0.95
ACGTcount: A:0.51, C:0.10, G:0.19, T:0.20
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGAATAAGAATCAGGTGACAA
Found at i:49120736 original size:27 final size:26
Alignment explanation
Indices: 49120639--49120746 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
49120629 AGCATGGCTG
* * *
49120639 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAAAGCCA
* * *
49120665 CCAGTTATAGATATTGTGGCAGAGCCA
1 CCAG-AACAGATATTGTGGCAAAGCCA
* *
49120692 CCAGAATAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAAAGCCA
*
49120719 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGGCAAAGCCA
49120746 C
1 C
49120747 TTAACAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 11 0.16
27 52 0.74
28 7 0.10
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:49121513 original size:27 final size:27
Alignment explanation
Indices: 49121483--49121616 Score: 180
Period size: 27 Copynumber: 5.0 Consensus size: 27
49121473 GGGGCAAAAT
* *
49121483 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49121510 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
49121537 GATATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49121564 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49121591 AGTAATTCTACCCTACAA-GGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
49121617 AATAATTTTG
Statistics
Matches: 94, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 8 0.09
27 86 0.91
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:49133997 original size:39 final size:40
Alignment explanation
Indices: 49133858--49134025 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
49133848 TCCTCGTTCA
* * * * *
49133858 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
49133897 -ATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
49133936 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
49133976 AATGCC-TCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
49134015 AAGGCCTTCGG
1 AATGCCTTCGG
49134026 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
38 32 0.29
39 34 0.30
40 46 0.41
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:49134011 original size:79 final size:78
Alignment explanation
Indices: 49133856--49134025 Score: 216
Period size: 79 Copynumber: 2.2 Consensus size: 78
49133846 GCTCCTCGTT
* * *
49133856 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACATGCCTTCGGGACGTAACCCGGAT
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACATGCCTTCGGGACGTAACCCGGAT
49133921 TTAACAACTCGCA
66 TTAACAACTCGCA
* * * *
49133934 CGAATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACGAATGCC-TCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACAC--ATGCCTTCGGGACGTAACCCGG
** *
49133998 ATTTAGTATCTCGCA
64 ATTTAACAACTCGCA
*
49134013 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
49134026 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
78 35 0.45
79 38 0.49
80 5 0.06
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACATGCCTTCGGGACGTAACCCGGAT
TTAACAACTCGCA
Found at i:49141850 original size:40 final size:40
Alignment explanation
Indices: 49141759--49141928 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
49141749 TCCTCGTTCA
* * * * *
49141759 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
49141798 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
49141838 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
49141878 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
49141918 AAGGCCTTCGG
1 AATGCCTTCGG
49141929 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:49144152 original size:23 final size:23
Alignment explanation
Indices: 49144120--49144168 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
49144110 GAGTTTAATC
* *
49144120 TAATATCCCGAAAATTACTACCG
1 TAATACCCCGAAAATTACTACAG
49144143 TAATACCCCGAAAATTACTACAG
1 TAATACCCCGAAAATTACTACAG
49144166 TAA
1 TAA
49144169 GAAAGTAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.24
Consensus pattern (23 bp):
TAATACCCCGAAAATTACTACAG
Found at i:49144351 original size:30 final size:31
Alignment explanation
Indices: 49144326--49144384 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
49144316 CTAAATACTC
* **
49144326 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGACCAATAGTGTAAATATGA
49144356 AAAATTTGAAGGACCAATAGTGTAAATAT
1 AAAATTTGAAGGACCAATAGTGTAAATAT
49144385 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGACCAATAGTGTAAATATGA
Found at i:49145283 original size:33 final size:33
Alignment explanation
Indices: 49145246--49145312 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
49145236 TAAAATATGT
*
49145246 AAATAAATATTATTGATTCTAGTTTATCATAGA
1 AAATAAATATTATTGAGTCTAGTTTATCATAGA
*
49145279 AAATAAATATTATTGAGTCTAGTTTCTCATAGA
1 AAATAAATATTATTGAGTCTAGTTTATCATAGA
49145312 A
1 A
49145313 GAAACAGTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.40
Consensus pattern (33 bp):
AAATAAATATTATTGAGTCTAGTTTATCATAGA
Found at i:49151057 original size:8 final size:8
Alignment explanation
Indices: 49151044--49151068 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
49151034 TTAGGGTAGA
49151044 CCCATGAT
1 CCCATGAT
49151052 CCCATGAT
1 CCCATGAT
49151060 CCCATGAT
1 CCCATGAT
49151068 C
1 C
49151069 TTTTTCCAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.40, G:0.12, T:0.24
Consensus pattern (8 bp):
CCCATGAT
Found at i:49152574 original size:21 final size:21
Alignment explanation
Indices: 49152550--49152589 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
49152540 ACTGACTAAT
49152550 TCTACTT-TTTCTGTTTATTCC
1 TCTACTTCTTT-TGTTTATTCC
*
49152571 TCTAGTTCTTTTGTTTATT
1 TCTACTTCTTTTGTTTATT
49152590 TCGTAGTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.10, C:0.17, G:0.07, T:0.65
Consensus pattern (21 bp):
TCTACTTCTTTTGTTTATTCC
Found at i:49170587 original size:25 final size:25
Alignment explanation
Indices: 49170559--49170606 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
49170549 TTTTAGCTCT
49170559 TATGAGCTTACCGATACTCAGCTTG
1 TATGAGCTTACCGATACTCAGCTTG
* *
49170584 TATGAGCTTACCGTTATTCAGCT
1 TATGAGCTTACCGATACTCAGCT
49170607 CAGAGGAGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (25 bp):
TATGAGCTTACCGATACTCAGCTTG
Found at i:49179873 original size:119 final size:120
Alignment explanation
Indices: 49179691--49179913 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
49179681 TCCTCGTTCA
*
49179691 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
49179756 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
49179811 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
49179873 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
49179914 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:49179913 original size:40 final size:40
Alignment explanation
Indices: 49179689--49179913 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
49179679 GCTCCTCGTT
* *
49179689 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
49179729 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
49179769 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
49179809 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
49179848 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
49179889 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49179914 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:49185408 original size:27 final size:27
Alignment explanation
Indices: 49185273--49185412 Score: 111
Period size: 27 Copynumber: 5.2 Consensus size: 27
49185263 GGCAAGTTAA
*
49185273 CCCCAGTTCACAACTCAACTGGCAAAC
1 CCCCAATTCACAACTCAACTGGCAAAC
* * * * * *
49185300 CCCTAGTTCGCAGCTTAACTTG-ATAAC
1 CCCCAATTCACAACTCAACTGGCA-AAC
* * * * *
49185327 CCCTAGTTCGCAACACAACTGGTAAAC
1 CCCCAATTCACAACTCAACTGGCAAAC
* **
49185354 CCCCAATTCTCAACTCAACTCACAAAC
1 CCCCAATTCACAACTCAACTGGCAAAC
* *
49185381 CTCCAATTCACAACTCAACTGGCGAAC
1 CCCCAATTCACAACTCAACTGGCAAAC
49185408 CCCCA
1 CCCCA
49185413 GTTTGCAAGT
Statistics
Matches: 89, Mismatches: 22, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
26 1 0.01
27 87 0.98
28 1 0.01
ACGTcount: A:0.32, C:0.39, G:0.10, T:0.19
Consensus pattern (27 bp):
CCCCAATTCACAACTCAACTGGCAAAC
Found at i:49187622 original size:173 final size:173
Alignment explanation
Indices: 49187328--49187680 Score: 609
Period size: 173 Copynumber: 2.0 Consensus size: 173
49187318 TAGATGAATC
* * * *
49187328 AATTAGCTATGTTGGGATTTAGTTGAGATTTAATTAGAACTGAACTAAACTACTGTAGATGATTA
1 AATTGGCTATGTTGGGATTTAGTTGAGATTTAATTACAACTAAACTAAACTACTATAGATGATTA
49187393 GACTTAAAACTTGTTAAGTGTGTTTAATCACGGGAATCAAGGGTGTTAGTGGGATTATCTAATTT
66 GACTTAAAACTTGTTAAGTGTGTTTAATCACGGGAATCAAGGGTGTTAGTGGGATTATCTAATTT
49187458 CTCCACTAAACCTTGTCTCTATTGCATGAGTATATAAGGTTAT
131 CTCCACTAAACCTTGTCTCTATTGCATGAGTATATAAGGTTAT
*
49187501 AATTGGCTATGTTGGGATTTAGTTGAGATTTAATTACAACTAAACTAGACTACTATAGATGATTA
1 AATTGGCTATGTTGGGATTTAGTTGAGATTTAATTACAACTAAACTAAACTACTATAGATGATTA
* *
49187566 GACTTAAAACTTGTTAAG-GTTGTTTAATCACTGGAATCAAGGGTGTTAGTGGGATTATCTGATT
66 GACTTAAAACTTGTTAAGTG-TGTTTAATCACGGGAATCAAGGGTGTTAGTGGGATTATCTAATT
* *
49187630 TCTCCACTAAACCTTGTCTCTGTTGCATGATTATATAAGGTTAT
130 TCTCCACTAAACCTTGTCTCTATTGCATGAGTATATAAGGTTAT
49187674 AATTGGC
1 AATTGGC
49187681 CACCATTACC
Statistics
Matches: 170, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
172 1 0.01
173 169 0.99
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (173 bp):
AATTGGCTATGTTGGGATTTAGTTGAGATTTAATTACAACTAAACTAAACTACTATAGATGATTA
GACTTAAAACTTGTTAAGTGTGTTTAATCACGGGAATCAAGGGTGTTAGTGGGATTATCTAATTT
CTCCACTAAACCTTGTCTCTATTGCATGAGTATATAAGGTTAT
Found at i:49193656 original size:20 final size:20
Alignment explanation
Indices: 49193549--49193668 Score: 114
Period size: 20 Copynumber: 6.0 Consensus size: 20
49193539 TCTATTTGTG
*
49193549 TTTGGTGCCTCTGTTTGTAC
1 TTTGGTGCCTCTGTTTGCAC
** * *
49193569 TTTAATGCCTTTGTTTTCAC
1 TTTGGTGCCTCTGTTTGCAC
49193589 TTTGGTGCCTCTGTTTGCAC
1 TTTGGTGCCTCTGTTTGCAC
* * **
49193609 TTCGATGCCTCTGACTGCAC
1 TTTGGTGCCTCTGTTTGCAC
* * *
49193629 ATTCGTGCCTCTGTTTACAC
1 TTTGGTGCCTCTGTTTGCAC
*
49193649 TTTGGTGCCTGTGTTATGCA
1 TTTGGTGCCTCTGTT-TGCA
49193669 TCTCGATGCT
Statistics
Matches: 75, Mismatches: 24, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
20 72 0.96
21 3 0.04
ACGTcount: A:0.11, C:0.24, G:0.21, T:0.44
Consensus pattern (20 bp):
TTTGGTGCCTCTGTTTGCAC
Found at i:49194115 original size:80 final size:80
Alignment explanation
Indices: 49194013--49194253 Score: 410
Period size: 80 Copynumber: 3.0 Consensus size: 80
49194003 AATGATTGTC
* * * *
49194013 AGGGTATAATTATGAAATCTCTTTTAACATCAATTTATAAGTTAAGATAAGATGATATTGAATTC
1 AGGGTATAGTTATGAAAACTCTTTTAATATCAATTTATAAGTTAAGGTAAGATGATATTGAATTC
49194078 ATGAATCATATGGAA
66 ATGAATCATATGGAA
49194093 AGGGTATAGTTATGAAAACTCTTTTAATATCAATTTATAAGTTAAGGTAAGATGATATTGAATTC
1 AGGGTATAGTTATGAAAACTCTTTTAATATCAATTTATAAGTTAAGGTAAGATGATATTGAATTC
49194158 ATGAATCATATGGAA
66 ATGAATCATATGGAA
* * *
49194173 AAGGTATAGTTATGAAAACTCTTTCAATATCAATTTATAAGTTAAGGTAAGATGAAATTGAATTC
1 AGGGTATAGTTATGAAAACTCTTTTAATATCAATTTATAAGTTAAGGTAAGATGATATTGAATTC
*
49194238 ATGAATAATATGGAA
66 ATGAATCATATGGAA
49194253 A
1 A
49194254 TTTTATGTGA
Statistics
Matches: 153, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 153 1.00
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.35
Consensus pattern (80 bp):
AGGGTATAGTTATGAAAACTCTTTTAATATCAATTTATAAGTTAAGGTAAGATGATATTGAATTC
ATGAATCATATGGAA
Done.