Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 190 of 230
Found at i:57217958 original size:17 final size:17
Alignment explanation
Indices: 57217936--57217968 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
57217926 TAAATGAAAA
57217936 AAATGCTAGGGCAATTG
1 AAATGCTAGGGCAATTG
*
57217953 AAATGCTATGGCAATT
1 AAATGCTAGGGCAATT
57217969 CTCAAAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.27
Consensus pattern (17 bp):
AAATGCTAGGGCAATTG
Found at i:57221513 original size:44 final size:45
Alignment explanation
Indices: 57221443--57221533 Score: 157
Period size: 44 Copynumber: 2.0 Consensus size: 45
57221433 TAAATTTGTC
* *
57221443 AAAACTTGGTTGAGTCCTTTAGTTGTCATTATCTTGACAAATTGA
1 AAAACTTGGTTGAGTCCTTCAATTGTCATTATCTTGACAAATTGA
57221488 AAAACTTGG-TGAGTCCTTCAATTGTCATTATCTTGACAAATTGA
1 AAAACTTGGTTGAGTCCTTCAATTGTCATTATCTTGACAAATTGA
57221532 AA
1 AA
57221534 GTGTTCATCA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
44 35 0.80
45 9 0.20
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.37
Consensus pattern (45 bp):
AAAACTTGGTTGAGTCCTTCAATTGTCATTATCTTGACAAATTGA
Found at i:57236562 original size:65 final size:65
Alignment explanation
Indices: 57236456--57236583 Score: 202
Period size: 65 Copynumber: 2.0 Consensus size: 65
57236446 CCTATGCATC
* ** *
57236456 AGATAATAATAACATGGCATGCAGTAAATAGTAACTGTCAAACATGCATTCAGGTCAAGCTTATT
1 AGATAATAATAACATGGCATACAGTAAATAGTAACAATCAAACATGCATTCAGGTCAACCTTATT
* *
57236521 AGATAATAATAACATGGCATATAGTAAATAGTAGCAATCAAACATGCATTCAGGTCAACCTTA
1 AGATAATAATAACATGGCATACAGTAAATAGTAACAATCAAACATGCATTCAGGTCAACCTTA
57236584 ACCCTAGGGT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.27
Consensus pattern (65 bp):
AGATAATAATAACATGGCATACAGTAAATAGTAACAATCAAACATGCATTCAGGTCAACCTTATT
Found at i:57239721 original size:55 final size:55
Alignment explanation
Indices: 57239625--57239730 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 55
57239615 GTAGTCCCAT
* **
57239625 GCCCGTGTTAATCTAACAGGTTTGACCATGGTTACTTGGCACGGACATGTCGCAC
1 GCCCGTGTTAATCTAACAGGTTTGACCACGGTTACAAGGCACGGACATGTCGCAC
* * * *
57239680 GCCCGTGTTAAT-TAGATAGGTTTGGCCACGGTTTCAAGGCACGGGCATGTC
1 GCCCGTGTTAATCTA-ACAGGTTTGACCACGGTTACAAGGCACGGACATGTC
57239731 TCACACTCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 2 0.05
55 41 0.95
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (55 bp):
GCCCGTGTTAATCTAACAGGTTTGACCACGGTTACAAGGCACGGACATGTCGCAC
Found at i:57243212 original size:40 final size:40
Alignment explanation
Indices: 57243153--57243374 Score: 369
Period size: 40 Copynumber: 5.6 Consensus size: 40
57243143 GAGCATTGGA
* *
57243153 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
57243193 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAG-TG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
57243232 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
57243272 ATATATCCGGGCTAAGACCCGAAGGCAATTATGC-AG-TG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
57243310 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
57243350 ATATGTCCGGGTTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGG
57243375 AAATGTGTTT
Statistics
Matches: 173, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
38 36 0.21
39 41 0.24
40 96 0.55
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
Found at i:57243343 original size:78 final size:79
Alignment explanation
Indices: 57243153--57243374 Score: 392
Period size: 79 Copynumber: 2.8 Consensus size: 79
57243143 GAGCATTGGA
* * *
57243153 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTGATATATCCGGGCTATGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATATCCGGGCTAAGACCCGAAGG
57243218 CAATTATGCGAGTG
66 CAATTATGCGAGTG
57243232 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATATCCGGGCTAAGACCCGAAGG
57243297 CAATTATGC-AGTG
66 CAATTATGCGAGTG
* *
57243310 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGTTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATATCCGGGCTAAGACCCGAAGG
57243375 AAATGTGTTT
Statistics
Matches: 138, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
78 67 0.49
79 71 0.51
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (79 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATATCCGGGCTAAGACCCGAAGG
CAATTATGCGAGTG
Found at i:57251866 original size:40 final size:40
Alignment explanation
Indices: 57251807--57252031 Score: 387
Period size: 40 Copynumber: 5.6 Consensus size: 40
57251797 GAGCATTGGA
57251807 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
57251847 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
57251887 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
57251927 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
57251967 ATATATCTGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
57252007 ATATGTCCGGGTTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGG
57252032 TAAATGTGTT
Statistics
Matches: 173, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 173 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:57256097 original size:61 final size:62
Alignment explanation
Indices: 57256014--57256137 Score: 223
Period size: 61 Copynumber: 2.0 Consensus size: 62
57256004 CATTTACATG
*
57256014 TCCATATGGTACGTTTTCTTATCGAAGAATCCCTTTTGGATTGTGTAATGATCTTAC-ATTT
1 TCCATATGGTACGTTTTCTTATCGAAGAATCCCTTTTGCATTGTGTAATGATCTTACTATTT
*
57256075 TCCATATGGTACGTTTTGTTATCGAAGAATCCCTTTTGCATTGTGTAATGATCTTACTATTT
1 TCCATATGGTACGTTTTCTTATCGAAGAATCCCTTTTGCATTGTGTAATGATCTTACTATTT
57256137 T
1 T
57256138 TCAATGTTGC
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
61 55 0.92
62 5 0.08
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.45
Consensus pattern (62 bp):
TCCATATGGTACGTTTTCTTATCGAAGAATCCCTTTTGCATTGTGTAATGATCTTACTATTT
Found at i:57259849 original size:15 final size:16
Alignment explanation
Indices: 57259824--57259853 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
57259814 CCAAGTGGTT
57259824 CACTCGTTTTGAGCGA
1 CACTCGTTTTGAGCGA
57259840 CACT-GTTTTGAGCG
1 CACTCGTTTTGAGCG
57259854 GTTTGACAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.23, G:0.27, T:0.33
Consensus pattern (16 bp):
CACTCGTTTTGAGCGA
Found at i:57261553 original size:10 final size:10
Alignment explanation
Indices: 57261523--57261556 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
57261513 TATCTGCATC
*
57261523 TATCAAAAATA
1 TATC-AAAATT
57261534 TATCAAAATT
1 TATCAAAATT
57261544 TATCAAAATT
1 TATCAAAATT
57261554 TAT
1 TAT
57261557 TATAAAATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 18 0.82
11 4 0.18
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (10 bp):
TATCAAAATT
Found at i:57261978 original size:16 final size:16
Alignment explanation
Indices: 57261957--57261995 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
57261947 AACCATGCAA
57261957 TACATTTAGATTTGCC
1 TACATTTAGATTTGCC
57261973 TACATTTAGATTTGCC
1 TACATTTAGATTTGCC
57261989 TACATTT
1 TACATTT
57261996 CTTATATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (16 bp):
TACATTTAGATTTGCC
Found at i:57263674 original size:30 final size:30
Alignment explanation
Indices: 57263618--57263675 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
57263608 ATTTTAGGAT
* *
57263618 CCACACGGGCTGGACACATGCTCATGTGAG
1 CCACACGGGCTAGACACAGGCTCATGTGAG
*
57263648 CCACATGGGCTAGACACACGGC-CATGTG
1 CCACACGGGCTAGACACA-GGCTCATGTG
57263676 CCAGCCCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.16
Consensus pattern (30 bp):
CCACACGGGCTAGACACAGGCTCATGTGAG
Found at i:57268433 original size:5 final size:6
Alignment explanation
Indices: 57268420--57268446 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
57268410 AAGCATTTAG
57268420 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
57268447 GCTATCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:57279996 original size:17 final size:19
Alignment explanation
Indices: 57279974--57280010 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
57279964 CCATGTCAGC
57279974 AAAAA-TAAAATT-ATAAA
1 AAAAATTAAAATTAATAAA
57279991 AAAAATTAAAATTAATAAA
1 AAAAATTAAAATTAATAAA
57280010 A
1 A
57280011 TATATAGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 7 0.39
19 6 0.33
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAAATTAAAATTAATAAA
Found at i:57281281 original size:21 final size:20
Alignment explanation
Indices: 57281230--57281278 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
57281220 TGTCTCTTGA
*
57281230 ATTGTTTTATTTATAAGATT
1 ATTGTTTTATTTATAAAATT
*
57281250 ATTAATTTTATTTATAAAATT
1 ATT-GTTTTATTTATAAAATT
57281271 ATTGTTTT
1 ATTGTTTT
57281279 TATAAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (20 bp):
ATTGTTTTATTTATAAAATT
Found at i:57283288 original size:72 final size:72
Alignment explanation
Indices: 57283171--57283354 Score: 359
Period size: 72 Copynumber: 2.6 Consensus size: 72
57283161 ACAACTTGAC
*
57283171 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
57283236 ACTAACA
66 ACTAACA
57283243 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
57283308 ACTAACA
66 ACTAACA
57283315 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
57283355 AATAATAATA
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 111 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.28
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:57283363 original size:3 final size:3
Alignment explanation
Indices: 57283355--57283404 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
57283345 ATTACATCCA
57283355 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
57283403 AA
1 AA
57283405 AACATGTGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:57287740 original size:72 final size:72
Alignment explanation
Indices: 57287623--57287806 Score: 359
Period size: 72 Copynumber: 2.6 Consensus size: 72
57287613 ACAACTTGAC
*
57287623 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
57287688 ACTAACA
66 ACTAACA
57287695 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
57287760 ACTAACA
66 ACTAACA
57287767 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
57287807 AATAATAATA
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 111 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.28
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:57287815 original size:3 final size:3
Alignment explanation
Indices: 57287807--57287853 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
57287797 ATTACATCCA
57287807 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
57287854 AACATGTGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:57291785 original size:32 final size:32
Alignment explanation
Indices: 57291743--57291818 Score: 125
Period size: 32 Copynumber: 2.4 Consensus size: 32
57291733 ACCTAACATT
*
57291743 CAAACCCAAAATGACCTGAATTCTAAATGATC
1 CAAACCCAAAATGACCTGAATTCAAAATGATC
* *
57291775 CAAACTCAAAATGATCTGAATTCAAAATGATC
1 CAAACCCAAAATGACCTGAATTCAAAATGATC
57291807 CAAACCCAAAAT
1 CAAACCCAAAAT
57291819 TACCCCACCT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.47, C:0.24, G:0.08, T:0.21
Consensus pattern (32 bp):
CAAACCCAAAATGACCTGAATTCAAAATGATC
Found at i:57291805 original size:16 final size:16
Alignment explanation
Indices: 57291749--57291806 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
57291739 CATTCAAACC
*
57291749 CAAAATGACCTGAATT
1 CAAAATGATCTGAATT
* ** *
57291765 CTAAATGATCCAAACT
1 CAAAATGATCTGAATT
57291781 CAAAATGATCTGAATT
1 CAAAATGATCTGAATT
57291797 CAAAATGATC
1 CAAAATGATC
57291807 CAAACCCAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (16 bp):
CAAAATGATCTGAATT
Found at i:57291816 original size:16 final size:16
Alignment explanation
Indices: 57291767--57291818 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
57291757 CCTGAATTCT
57291767 AAATGATCCAAACTCA
1 AAATGATCCAAACTCA
** *
57291783 AAATGATCTGAATTCA
1 AAATGATCCAAACTCA
*
57291799 AAATGATCCAAACCCA
1 AAATGATCCAAACTCA
57291815 AAAT
1 AAAT
57291819 TACCCCACCT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.50, C:0.21, G:0.08, T:0.21
Consensus pattern (16 bp):
AAATGATCCAAACTCA
Found at i:57311372 original size:24 final size:24
Alignment explanation
Indices: 57311345--57311413 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
57311335 GGAATCGGTG
* *
57311345 AGCTCTCAGGAGCTGAAATCGATA
1 AGCTCTCACGAGCTAAAATCGATA
* *
57311369 AGCT-TATACGAGGTAAAAATCGATA
1 AGCTCT-CACGAGCT-AAAATCGATA
57311394 AGCTCTCACGAGCTAAAATC
1 AGCTCTCACGAGCTAAAATC
57311414 AATTATCCCT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
23 1 0.03
24 15 0.42
25 19 0.53
26 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (24 bp):
AGCTCTCACGAGCTAAAATCGATA
Found at i:57314686 original size:11 final size:11
Alignment explanation
Indices: 57314670--57314708 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
57314660 GACCCTCTTT
57314670 AAAATTATAAA
1 AAAATTATAAA
57314681 AAAATTATAAA
1 AAAATTATAAA
*
57314692 CTATAATTATAAA
1 --AAAATTATAAA
57314705 AAAA
1 AAAA
57314709 AAACTTCGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 14 0.58
13 10 0.42
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAATTATAAA
Found at i:57314764 original size:16 final size:18
Alignment explanation
Indices: 57314743--57314778 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
57314733 CCATGTCAGC
57314743 AAAAA-TAAAATT-ATAA
1 AAAAATTAAAATTAATAA
57314759 AAAAATTAAAATTAATAA
1 AAAAATTAAAATTAATAA
57314777 AA
1 AA
57314779 TATATAGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 7 0.39
18 6 0.33
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (18 bp):
AAAAATTAAAATTAATAA
Found at i:57316053 original size:21 final size:21
Alignment explanation
Indices: 57316008--57316055 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
57315998 TCTTGAATTG
** *
57316008 TTTTATTTATAAGGTTGTTAA
1 TTTTATTTATAAAATTATTAA
*
57316029 TTTTATTTATAAAATTATTAT
1 TTTTATTTATAAAATTATTAA
57316050 TTTTAT
1 TTTTAT
57316056 AAATAAATTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (21 bp):
TTTTATTTATAAAATTATTAA
Found at i:57320399 original size:12 final size:12
Alignment explanation
Indices: 57320378--57320420 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
57320368 ATTAGTATAA
*
57320378 TATTACTATTAC
1 TATTATTATTAC
*
57320390 TATTATTATTAT
1 TATTATTATTAC
* *
57320402 TGTTATTAATAC
1 TATTATTATTAC
57320414 TATTATT
1 TATTATT
57320421 TTTTTTCTCT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:57321149 original size:17 final size:18
Alignment explanation
Indices: 57321129--57321166 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
57321119 TTCCTTTATA
*
57321129 TTTAATTTTTTTC-TTTG
1 TTTAATTTTCTTCTTTTG
57321146 TTT-ATTTTCTTCTTTTG
1 TTTAATTTTCTTCTTTTG
57321163 TTTA
1 TTTA
57321167 TTGATTTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.11, C:0.08, G:0.05, T:0.76
Consensus pattern (18 bp):
TTTAATTTTCTTCTTTTG
Found at i:57321158 original size:16 final size:17
Alignment explanation
Indices: 57321133--57321168 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
57321123 TTTATATTTA
*
57321133 ATTTTTTTC-TTTGTTT
1 ATTTTCTTCTTTTGTTT
57321149 ATTTTCTTCTTTTGTTT
1 ATTTTCTTCTTTTGTTT
57321166 ATT
1 ATT
57321169 GATTTATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.08, C:0.08, G:0.06, T:0.78
Consensus pattern (17 bp):
ATTTTCTTCTTTTGTTT
Found at i:57326501 original size:28 final size:28
Alignment explanation
Indices: 57326461--57326516 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
57326451 TTACATTGGA
57326461 ATAATGATTAATGAACTAATAAAACTTT
1 ATAATGATTAATGAACTAATAAAACTTT
*
57326489 ATAATGATTAATGGACTAATAAAACTTT
1 ATAATGATTAATGAACTAATAAAACTTT
57326517 CACAAGGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (28 bp):
ATAATGATTAATGAACTAATAAAACTTT
Found at i:57327325 original size:44 final size:45
Alignment explanation
Indices: 57327241--57327327 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 45
57327231 CTTTATCTCC
* *
57327241 CTGGTCAGCAGTGGAATATGTTTGAAGATTGTGAATCCTATCTTT
1 CTGGTCAACAGTGGAATATGGTTGAAGATTGTGAATCCTATCTTT
57327286 CTGGTCAACAGTGGAATA-GGTTGAAGATTGTGAATCCTATCT
1 CTGGTCAACAGTGGAATATGGTTGAAGATTGTGAATCCTATCT
57327328 CCTTGAGCAG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 23 0.57
45 17 0.43
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.34
Consensus pattern (45 bp):
CTGGTCAACAGTGGAATATGGTTGAAGATTGTGAATCCTATCTTT
Found at i:57327777 original size:100 final size:100
Alignment explanation
Indices: 57327619--57327811 Score: 298
Period size: 100 Copynumber: 1.9 Consensus size: 100
57327609 AAACCACGGC
*
57327619 GGTGAATCTTACTCCTCTAGCAGTGTAATGGAACAGAATGAAGCTACGACGGCGAATCTTGTTTC
1 GGTGAATCTTACTCCTCTAGCAGTGTAATGGAACAGAATGAAGCTACGACGACGAATCTTGTTTC
* ** *
57327684 CTCAACATTGTGATTTAAAAGATTGAAGTCGTAAT
66 CCCAACATTGCAATTTAAAAGACTGAAGTCGTAAT
* * *
57327719 GGTGAATCTTACTTCC-CTGGCAGTGTAGTGGAACAGACTGAAGCTACGACGACGAATCTTGTTT
1 GGTGAATCTTAC-TCCTCTAGCAGTGTAATGGAACAGAATGAAGCTACGACGACGAATCTTGTTT
57327783 CCCCAACATTGCAATTTAAAAGACTGAAG
65 CCCCAACATTGCAATTTAAAAGACTGAAG
57327812 ATGGTGAATC
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 81 0.96
101 3 0.04
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (100 bp):
GGTGAATCTTACTCCTCTAGCAGTGTAATGGAACAGAATGAAGCTACGACGACGAATCTTGTTTC
CCCAACATTGCAATTTAAAAGACTGAAGTCGTAAT
Found at i:57327888 original size:44 final size:44
Alignment explanation
Indices: 57327818--57328157 Score: 209
Period size: 44 Copynumber: 7.8 Consensus size: 44
57327808 GAAGATGGTG
* *
57327818 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTAAATCCAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATCCAGT
* *
57327862 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAG-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAATC-CAGT
* * * *** *
57327907 -ATCTTATCTCTCTGAAATTGCAG-AGAGCAGATCGCAT---TT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATCCAGT
* * * * * * *
57327946 AAGTCTTATCTCCCTAAAATTGCAGTAGAGCAGACTAAGT-AAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATCCAGT
* ** *
57327990 AAGTCTCATC-CTCCTGAAGTTGCAGT-GAGGCAGACCGAAGATGGCA--
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA-AT-CCAGT
* * *
57328036 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATCCAGT
* * * **
57328080 AATCCTATCTCTCTGAAGTTGCAGTGGAGC-GAATTAAAACCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTAAATCCAGT
* * *
57328124 AATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
57328158 CGTATCGGGT
Statistics
Matches: 233, Mismatches: 43, Indels: 40
0.74 0.14 0.13
Matches are distributed among these distances:
40 1 0.00
41 20 0.09
42 13 0.06
43 12 0.05
44 144 0.62
45 33 0.14
46 9 0.04
48 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATCCAGT
Found at i:57328197 original size:218 final size:219
Alignment explanation
Indices: 57327803--57328281 Score: 615
Period size: 218 Copynumber: 2.2 Consensus size: 219
57327793 GCAATTTAAA
* ** * * * *
57327803 AGACTGAAGATGGTGAATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTAAATCCAGTAATCCT
1 AGACCGAAGATGGCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCAATAATCCT
* * *
57327868 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAATTGCAGAGA
66 ATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCACAAATCTTATCTCTCTGAAATTGCAGAGA
* * *
57327933 GCAGATCGCATTTAAGTCTTATCTCCCTAAAATTGCAGTAGAGCAGACT-AAGTAAGCAAGTCTC
131 GCAGATCGCATTCAAGTCTTATCTCCCTAAAATTGCAATAGAGCAGACTCAAGAAAGCAAGTCTC
* * *
57327997 ATCCTCCTGAAGTTGCAGTGAGGC
196 ATCCCCCTAAAATTGCAGTGAGGC
*
57328021 AGACCGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCT
1 AGACCGAAGATGGCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCAATAATCCT
* *
57328086 ATCTCTCTGAAGTTGCAGTGGAGCGAATTAAAACCACAAATCTTATCTCTCTGAAGTTGCAGTAG
66 ATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCACAAATCTTATCTCTCTGAAATTGCAG-AG
* * ** * * * *
57328151 AGTAGATCGTA-TCGGGTCTTATCTCTCTGAAGTTGCAATGGAGCAGACTCAAGAAAGCAAGTCT
130 AGCAGATCGCATTCAAGTCTTATCTCCCTAAAATTGCAATAGAGCAGACTCAAGAAAGCAAGTCT
* *
57328215 TATCCCCCTAAAATTGCAGTGGGGC
195 CATCCCCCTAAAATTGCAGTGAGGC
* ** *
57328240 AGA-CTAA-ATAAACAAATCCTATCTCCCTAAAGTTGTAGTGGA
1 AGACCGAAGAT-GGCAAATCTTATCTCCCTAAAGTTGTAGTGGA
57328282 CTGTATTAGA
Statistics
Matches: 224, Mismatches: 34, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
217 2 0.01
218 175 0.78
219 47 0.21
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (219 bp):
AGACCGAAGATGGCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCAATAATCCT
ATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCACAAATCTTATCTCTCTGAAATTGCAGAGA
GCAGATCGCATTCAAGTCTTATCTCCCTAAAATTGCAATAGAGCAGACTCAAGAAAGCAAGTCTC
ATCCCCCTAAAATTGCAGTGAGGC
Found at i:57328232 original size:45 final size:44
Alignment explanation
Indices: 57328183--57328270 Score: 104
Period size: 45 Copynumber: 2.0 Consensus size: 44
57328173 CTCTCTGAAG
* * *
57328183 TTGCAATGGAGCAGACTCAAGAAAGCAAGTCTTATCCCCCTAAAA
1 TTGCAATGGAGCAGACTAAAGAAA-CAAATCCTATCCCCCTAAAA
* * * *
57328228 TTGCAGTGGGGCAGACTAAATAAACAAATCCTATCTCCCTAAA
1 TTGCAATGGAGCAGACTAAAGAAACAAATCCTATCCCCCTAAA
57328271 GTTGTAGTGG
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
44 16 0.44
45 20 0.56
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.22
Consensus pattern (44 bp):
TTGCAATGGAGCAGACTAAAGAAACAAATCCTATCCCCCTAAAA
Found at i:57328280 original size:44 final size:45
Alignment explanation
Indices: 57327952--57328281 Score: 148
Period size: 44 Copynumber: 7.5 Consensus size: 45
57327942 ATTTAAGTCT
* * * *
57327952 TATCTCCCTAAAATTGCAGTAGAGCAGACT-AAGTAAGCAAGT-C
1 TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCC
* ** ** *
57327995 TCATC-CTCCTGAAGTTGCAGT-GAGGCAGACCGAAGATGGCAAATCT
1 T-ATCTC-CCTAAAGTTGCAGTGGA-GCAGACTAAAGAAAGCAAATCC
* * *
57328041 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAA--TAATCC
1 TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAG-AAAGCAAATCC
* * * * *
57328085 TATCTCTCTGAAGTTGCAGTGGAGC-GAATTAAA-ACCA-CAAATCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAG-ACTAAAGA-AAGCAAATCC
* * * * * * * *** *
57328129 TATCTCTCTGAAGTTGCAGTAGAGTAGA-T--CG-TATCGGGTCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCC
* * * * * *
57328170 TATCTCTCTGAAGTTGCAATGGAGCAGACTCAAGAAAGCAAGTCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCC
* * * *
57328215 TATCCCCCTAAAATTGCAGTGGGGCAGACTAAATAAA-CAAATCC
1 TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCC
*
57328259 TATCTCCCTAAAGTTGTAGTGGA
1 TATCTCCCTAAAGTTGCAGTGGA
57328282 CTGTATTAGA
Statistics
Matches: 217, Mismatches: 52, Indels: 35
0.71 0.17 0.12
Matches are distributed among these distances:
40 1 0.00
41 29 0.13
42 1 0.00
43 7 0.03
44 107 0.49
45 68 0.31
46 4 0.02
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (45 bp):
TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATCC
Found at i:57329716 original size:3 final size:3
Alignment explanation
Indices: 57329708--57329768 Score: 86
Period size: 3 Copynumber: 20.3 Consensus size: 3
57329698 ATTAGTTTAA
* * * *
57329708 TAT TAT TAT TAC TAT TAT TAT TAT TGT TAT TAA TAC TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
57329756 TAT TAT TAT TAT T
1 TAT TAT TAT TAT T
57329769 CTCTATATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:57329718 original size:21 final size:20
Alignment explanation
Indices: 57329692--57329768 Score: 65
Period size: 18 Copynumber: 4.0 Consensus size: 20
57329682 ATTTGTTTTT
*
57329692 TTATTAATTAGTTTAATATTA
1 TTATTAATTA-TTTATTATTA
*
57329713 TTATTACTATTA-TTATTATTG
1 TTATTA--ATTATTTATTATTA
*
57329734 TTATTAA-TA-CTATTATTA
1 TTATTAATTATTTATTATTA
57329752 TTATT-ATTA-TTATTATT
1 TTATTAATTATTTATTATT
57329769 CTCTATATAT
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
17 1 0.02
18 23 0.48
19 1 0.02
21 19 0.40
23 4 0.08
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (20 bp):
TTATTAATTATTTATTATTA
Found at i:57330480 original size:16 final size:17
Alignment explanation
Indices: 57330461--57330499 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
57330451 TTACTTTATA
*
57330461 TTTATTTTTTTC-TTTG
1 TTTATTTTCTTCATTTG
57330477 TTTATTTTCTTCATTTG
1 TTTATTTTCTTCATTTG
57330494 TTTATT
1 TTTATT
57330500 GATTTATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.10, C:0.08, G:0.05, T:0.77
Consensus pattern (17 bp):
TTTATTTTCTTCATTTG
Found at i:57332287 original size:32 final size:32
Alignment explanation
Indices: 57332246--57332321 Score: 125
Period size: 32 Copynumber: 2.4 Consensus size: 32
57332236 ACCTAACATT
57332246 CAAACTCAAAATGACCTGAATTCAAAATGATC
1 CAAACTCAAAATGACCTGAATTCAAAATGATC
* *
57332278 CAAACTCAAAATGATCTGAATTCGAAATGATC
1 CAAACTCAAAATGACCTGAATTCAAAATGATC
*
57332310 CAAACCCAAAAT
1 CAAACTCAAAAT
57332322 CACCCCACCT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.47, C:0.22, G:0.09, T:0.21
Consensus pattern (32 bp):
CAAACTCAAAATGACCTGAATTCAAAATGATC
Found at i:57332321 original size:16 final size:16
Alignment explanation
Indices: 57332246--57332321 Score: 73
Period size: 16 Copynumber: 4.8 Consensus size: 16
57332236 ACCTAACATT
57332246 CAAACTCAAAATGA-C
1 CAAACTCAAAATGATC
* *
57332261 CTGAATTCAAAATGATC
1 C-AAACTCAAAATGATC
57332278 CAAACTCAAAATGATC
1 CAAACTCAAAATGATC
** * *
57332294 TGAATTCGAAATGATC
1 CAAACTCAAAATGATC
*
57332310 CAAACCCAAAAT
1 CAAACTCAAAAT
57332322 CACCCCACCT
Statistics
Matches: 46, Mismatches: 13, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
15 1 0.02
16 43 0.93
17 2 0.04
ACGTcount: A:0.47, C:0.22, G:0.09, T:0.21
Consensus pattern (16 bp):
CAAACTCAAAATGATC
Found at i:57334071 original size:20 final size:21
Alignment explanation
Indices: 57334048--57334086 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
57334038 TATATTTAAC
57334048 ATTTTTA-TATGTTTTTAAAG
1 ATTTTTAGTATGTTTTTAAAG
*
57334068 ATTTTTAGTATTTTTTTAA
1 ATTTTTAGTATGTTTTTAA
57334087 TTTTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (21 bp):
ATTTTTAGTATGTTTTTAAAG
Found at i:57339205 original size:18 final size:19
Alignment explanation
Indices: 57339182--57339219 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
57339172 GGAAGCAAGC
*
57339182 AATGATTGAAGA-AATCAG
1 AATGATTGAAAAGAATCAG
57339200 AATGATTGAAAAGAATCAG
1 AATGATTGAAAAGAATCAG
57339219 A
1 A
57339220 CCTGGAGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.53, C:0.05, G:0.21, T:0.21
Consensus pattern (19 bp):
AATGATTGAAAAGAATCAG
Found at i:57343341 original size:22 final size:22
Alignment explanation
Indices: 57343294--57343343 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
57343284 CTTTTACGTT
* *
57343294 AAAAA-AGATGGAGAAGGGAGA
1 AAAAATAGAGGGAGAAGGCAGA
57343315 AAAAATAGAGGGAGAA-GCAGA
1 AAAAATAGAGGGAGAAGGCAGA
57343336 AGAAAATA
1 A-AAAATA
57343344 AAAAAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.60, C:0.02, G:0.32, T:0.06
Consensus pattern (22 bp):
AAAAATAGAGGGAGAAGGCAGA
Found at i:57347117 original size:26 final size:26
Alignment explanation
Indices: 57347088--57347137 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
57347078 ATGTTAGGAT
57347088 TATATTTCATTATAGGTT-TCTTTTGA
1 TATATTTCATTATA-GTTATCTTTTGA
57347114 TATATTTCATTATAGTTATCTTTT
1 TATATTTCATTATAGTTATCTTTT
57347138 AGTGTTCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (26 bp):
TATATTTCATTATAGTTATCTTTTGA
Found at i:57356458 original size:54 final size:54
Alignment explanation
Indices: 57356386--57356494 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 54
57356376 ATTTTTCTTT
*
57356386 TACCTATTATAACCTAGTTTTTATAATCATTAACCTTTTTATTTTACCTTTTTA
1 TACCTATTATAACCTAGTTTTTACAATCATTAACCTTTTTATTTTACCTTTTTA
*
57356440 TACCTATTATAACTTAGTTTTTACAATCATTAACCTTTTTATTTTACCTTTTTA
1 TACCTATTATAACCTAGTTTTTACAATCATTAACCTTTTTATTTTACCTTTTTA
57356494 T
1 T
57356495 GCCCAAAATT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.28, C:0.17, G:0.02, T:0.54
Consensus pattern (54 bp):
TACCTATTATAACCTAGTTTTTACAATCATTAACCTTTTTATTTTACCTTTTTA
Found at i:57357639 original size:20 final size:19
Alignment explanation
Indices: 57357611--57357654 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
57357601 ATAATTATTT
* *
57357611 TTTTAATATTTAAAATATA
1 TTTTAATATTCAAAATAAA
*
57357630 TTTTATATATTCAAATTAAA
1 TTTTA-ATATTCAAAATAAA
57357650 TTTTA
1 TTTTA
57357655 CGAACGATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTAATATTCAAAATAAA
Found at i:57358854 original size:22 final size:23
Alignment explanation
Indices: 57358829--57358875 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
57358819 TAATTATCTA
57358829 TTGTAGC-AATATATATATCCAC
1 TTGTAGCAAATATATATATCCAC
*
57358851 TTGTAGCAAAATGTATATATCCAC
1 TTGTAGC-AAATATATATATCCAC
57358875 T
1 T
57358876 CGAAAATGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.32
24 15 0.68
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (23 bp):
TTGTAGCAAATATATATATCCAC
Found at i:57359590 original size:20 final size:20
Alignment explanation
Indices: 57359565--57359624 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
57359555 TAAATCACAA
57359565 GTACTGATACATATTATAAG
1 GTACTGATACATATTATAAG
*
57359585 GTACTGATACATCCTTATAA-
1 GTACTGATACAT-ATTATAAG
* *
57359605 GTAATGATACTTATTATAAG
1 GTACTGATACATATTATAAG
57359625 TGCCGATACT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 6 0.18
20 22 0.65
21 6 0.18
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (20 bp):
GTACTGATACATATTATAAG
Found at i:57364109 original size:21 final size:21
Alignment explanation
Indices: 57364083--57364130 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
57364073 AAAAAGGGCA
*
57364083 AAGTCTCAATACTTATGAGCT
1 AAGTCTCAATACTTATGAGCC
*
57364104 AAGTCTCAATACTTTTGAGCC
1 AAGTCTCAATACTTATGAGCC
57364125 AAGTCT
1 AAGTCT
57364131 TGAGATTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (21 bp):
AAGTCTCAATACTTATGAGCC
Found at i:57368214 original size:18 final size:19
Alignment explanation
Indices: 57368191--57368226 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
57368181 TCCAGTTACT
57368191 TAAAGAGCTCAA-AACAAA
1 TAAAGAGCTCAAGAACAAA
*
57368209 TAAAGAGTTCAAGAACAA
1 TAAAGAGCTCAAGAACAA
57368227 TACCAAAGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.58, C:0.14, G:0.14, T:0.14
Consensus pattern (19 bp):
TAAAGAGCTCAAGAACAAA
Found at i:57371740 original size:17 final size:17
Alignment explanation
Indices: 57371704--57371750 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
57371694 CAAAAGGTTG
* *
57371704 TTATTTTGTAGTTTTTAT
1 TTATTTTCTA-TTGTTAT
57371722 TTATTTTCTATTGTTAT
1 TTATTTTCTATTGTTAT
57371739 TT-TTTTACTATT
1 TTATTTT-CTATT
57371751 ATATACATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 4 0.15
17 13 0.50
18 9 0.35
ACGTcount: A:0.17, C:0.04, G:0.06, T:0.72
Consensus pattern (17 bp):
TTATTTTCTATTGTTAT
Found at i:57372649 original size:23 final size:25
Alignment explanation
Indices: 57372595--57372643 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
57372585 TATGTACACA
*
57372595 TATATATTTTTAACGAATATTTTCC
1 TATATTTTTTTAACGAATATTTTCC
*
57372620 TATATTTTTTTAATGAATATTTTC
1 TATATTTTTTTAACGAATATTTTC
57372644 ATATTTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.08, G:0.04, T:0.57
Consensus pattern (25 bp):
TATATTTTTTTAACGAATATTTTCC
Found at i:57378263 original size:20 final size:21
Alignment explanation
Indices: 57378226--57378265 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
57378216 TGGTTGTTGT
*
57378226 TGGTTTTCCACTTCTCATTTA
1 TGGTTTCCCACTTCTCATTTA
*
57378247 TGGTTTCCCA-TTGTCATTT
1 TGGTTTCCCACTTCTCATTT
57378266 TTGCCACTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.12, C:0.23, G:0.12, T:0.53
Consensus pattern (21 bp):
TGGTTTCCCACTTCTCATTTA
Found at i:57388381 original size:39 final size:39
Alignment explanation
Indices: 57388319--57388406 Score: 140
Period size: 39 Copynumber: 2.3 Consensus size: 39
57388309 AACGGTAACA
* * * *
57388319 GTAATAGTAACAGTATTCGACACACAAAGTGCCGAATTG
1 GTAACAGTAACAATATTCAACACACAAAGTGCCGAATCG
57388358 GTAACAGTAACAATATTCAACACACAAAGTGCCGAATCG
1 GTAACAGTAACAATATTCAACACACAAAGTGCCGAATCG
57388397 GTAACAGTAA
1 GTAACAGTAA
57388407 TAGTAGTCGG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.20
Consensus pattern (39 bp):
GTAACAGTAACAATATTCAACACACAAAGTGCCGAATCG
Found at i:57392228 original size:101 final size:101
Alignment explanation
Indices: 57392108--57392305 Score: 351
Period size: 101 Copynumber: 2.0 Consensus size: 101
57392098 TCAATGCAAG
* * *
57392108 GACCATCAAATACAATTTTTTTATTATCGTGGTAGACAACCATTGGATGAACTTTATGAAGCTTA
1 GACCAGCAAATACAATTTTTTTATGATCATGGTAGACAACCATTGGATGAACTTTATGAAGCTTA
57392173 ATTTTTCATTAAATTAGACCTTTGTTCTAGATGTTT
66 ATTTTTCATTAAATTAGACCTTTGTTCTAGATGTTT
*
57392209 GACCAGCAAATACAATTTTTTTATGATCATGGTAGACAATCATTGGATGAACTTTATGAAGCTTA
1 GACCAGCAAATACAATTTTTTTATGATCATGGTAGACAACCATTGGATGAACTTTATGAAGCTTA
*
57392274 ATTTTTCATTAAATTGGACCTTTGTTCTAGAT
66 ATTTTTCATTAAATTAGACCTTTGTTCTAGAT
57392306 TTTTCCTAAA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 92 1.00
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (101 bp):
GACCAGCAAATACAATTTTTTTATGATCATGGTAGACAACCATTGGATGAACTTTATGAAGCTTA
ATTTTTCATTAAATTAGACCTTTGTTCTAGATGTTT
Found at i:57405306 original size:18 final size:19
Alignment explanation
Indices: 57405283--57405320 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
57405273 GGAAGCAAGC
*
57405283 AATGATTG-AAGAAATCAG
1 AATGATTGAAAAAAATCAG
57405301 AATGATTGAAAAAAATCAG
1 AATGATTGAAAAAAATCAG
57405320 A
1 A
57405321 CCTGGAGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.55, C:0.05, G:0.18, T:0.21
Consensus pattern (19 bp):
AATGATTGAAAAAAATCAG
Found at i:57407677 original size:13 final size:13
Alignment explanation
Indices: 57407659--57407685 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
57407649 TTAATTTATA
57407659 TGTGTGAAAATTT
1 TGTGTGAAAATTT
57407672 TGTGTGAAAATTT
1 TGTGTGAAAATTT
57407685 T
1 T
57407686 ATCGTTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:57410005 original size:43 final size:42
Alignment explanation
Indices: 57409945--57410066 Score: 163
Period size: 43 Copynumber: 2.9 Consensus size: 42
57409935 TACAACGTCG
* **
57409945 CTAACTTTTGCGGCGCTTCTCCCACAAACGCCGCTATAGGTC
1 CTAACTTTAGCGGCGCTTCTCCCACAAACGCCGCTATAGAAC
*
57409987 CTAACATTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAAC
1 CTAAC-TTTAGCGGCGCTTCTCCCACAAACGCCGCTATAGAAC
* * *
57410030 ATGATCTTTAGCGGCGCTTCTCTCACAAACGCCGCTA
1 CT-AACTTTAGCGGCGCTTCTCCCACAAACGCCGCTA
57410067 AAGATCATGG
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
42 5 0.07
43 63 0.90
44 2 0.03
ACGTcount: A:0.23, C:0.34, G:0.18, T:0.25
Consensus pattern (42 bp):
CTAACTTTAGCGGCGCTTCTCCCACAAACGCCGCTATAGAAC
Found at i:57410081 original size:43 final size:43
Alignment explanation
Indices: 57409993--57410197 Score: 250
Period size: 43 Copynumber: 4.8 Consensus size: 43
57409983 GGTCCTAACA
** *
57409993 TTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAACATGATC
1 TTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGAACATGATC
* * * *
57410036 TTTAGCGGCGCTTCTCTCACAAACGCCGCTAAAGATCATGGTC
1 TTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGAACATGATC
* * * * *
57410079 TTTAGTGGCGCTTTTATCACAAACGTCTCTATAGAACATGATT
1 TTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGAACATGATC
*
57410122 TTTAGCGACGCTTTTATCACAAACGCCGCTATAA-AACATGATC
1 TTTAGCGGCGCTTTTATCACAAACGCCGCTA-AAGAACATGATC
* * *
57410165 TTTGGCGGCGCTTTTATAATAAACGCCGCTAAA
1 TTTAGCGGCGCTTTTATCACAAACGCCGCTAAA
57410198 AGTACCGTTC
Statistics
Matches: 137, Mismatches: 24, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
42 2 0.01
43 134 0.98
44 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGAACATGATC
Found at i:57410100 original size:86 final size:86
Alignment explanation
Indices: 57409949--57410195 Score: 282
Period size: 86 Copynumber: 2.9 Consensus size: 86
57409939 ACGTCGCTAA
* * * * * * **
57409949 CTTTTGCGGCGCTTCTCCCACAAACGCCGCTATAGGTCCT-AACATTTAGCGGCGCTTTTCCCAC
1 CTTTAGCGGCGCTTCTCTCACAAACGCCGCTAAAGATCATGATC-TTTAGCGGCGCTTTTATCAC
57410013 AAACGCCGCTATAGAACATGAT
65 AAACGCCGCTATAGAACATGAT
* *
57410035 CTTTAGCGGCGCTTCTCTCACAAACGCCGCTAAAGATCATGGTCTTTAGTGGCGCTTTTATCACA
1 CTTTAGCGGCGCTTCTCTCACAAACGCCGCTAAAGATCATGATCTTTAGCGGCGCTTTTATCACA
* *
57410100 AACGTCTCTATAGAACATGAT
66 AACGCCGCTATAGAACATGAT
* * * * * * * *
57410121 TTTTAGCGACGCTTTTATCACAAACGCCGCTATAA-AACATGATCTTTGGCGGCGCTTTTATAAT
1 CTTTAGCGGCGCTTCTCTCACAAACGCCGCTA-AAGATCATGATCTTTAGCGGCGCTTTTATCAC
57410185 AAACGCCGCTA
65 AAACGCCGCTA
57410196 AAAGTACCGT
Statistics
Matches: 135, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
86 132 0.98
87 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.29
Consensus pattern (86 bp):
CTTTAGCGGCGCTTCTCTCACAAACGCCGCTAAAGATCATGATCTTTAGCGGCGCTTTTATCACA
AACGCCGCTATAGAACATGAT
Found at i:57412525 original size:21 final size:21
Alignment explanation
Indices: 57412501--57412543 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
57412491 TAAATTATTT
57412501 AAAACCTCAAAATATTTCAAG
1 AAAACCTCAAAATATTTCAAG
* * *
57412522 AAAACCTTAAATTGTTTCAAG
1 AAAACCTCAAAATATTTCAAG
57412543 A
1 A
57412544 CAGACAAAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.49, C:0.16, G:0.07, T:0.28
Consensus pattern (21 bp):
AAAACCTCAAAATATTTCAAG
Found at i:57412538 original size:68 final size:68
Alignment explanation
Indices: 57412454--57412588 Score: 198
Period size: 68 Copynumber: 2.0 Consensus size: 68
57412444 CGAAGACCAT
** *
57412454 AAAACCTCAAAATGTTTCAAGACAGGTAAAGAGATAATAAATTATTTAAAACCTCAAAATATTTC
1 AAAACCTCAAAATGTTTCAAGACAGACAAAGAGATAATAAATCATTTAAAACCTCAAAATATTTC
57412519 AAG
66 AAG
* * * * *
57412522 AAAACCTTAAATTGTTTCAAGACAGACAAAGATATAGTAAATCATTTAAACCCTCAAAATATTTC
1 AAAACCTCAAAATGTTTCAAGACAGACAAAGAGATAATAAATCATTTAAAACCTCAAAATATTTC
57412587 AA
66 AA
57412589 AACAAACAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
68 59 1.00
ACGTcount: A:0.49, C:0.15, G:0.09, T:0.27
Consensus pattern (68 bp):
AAAACCTCAAAATGTTTCAAGACAGACAAAGAGATAATAAATCATTTAAAACCTCAAAATATTTC
AAG
Found at i:57412615 original size:30 final size:30
Alignment explanation
Indices: 57412581--57412673 Score: 109
Period size: 30 Copynumber: 3.1 Consensus size: 30
57412571 ACCCTCAAAA
*
57412581 TATTTCAAAACAAACAAAGAGATAGTAAAT
1 TATTTCAAAACAAACAAAGACATAGTAAAT
* * *
57412611 TATTTCAAGACAACCAAAGATATAGTAAAT
1 TATTTCAAAACAAACAAAGACATAGTAAAT
*
57412641 TA-TT-AAAACAGAGACAAAGACCTAGTAAAT
1 TATTTCAAAACA-A-ACAAAGACATAGTAAAT
57412671 TAT
1 TAT
57412674 AAAAAAAACC
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
28 5 0.09
29 3 0.06
30 45 0.85
ACGTcount: A:0.53, C:0.12, G:0.11, T:0.25
Consensus pattern (30 bp):
TATTTCAAAACAAACAAAGACATAGTAAAT
Found at i:57420789 original size:41 final size:41
Alignment explanation
Indices: 57420732--57420917 Score: 248
Period size: 41 Copynumber: 4.5 Consensus size: 41
57420722 AATATTTTTT
* *
57420732 GCGGCGCTTTTCCAAAAACGCCGTTAAAGCCTCGAGCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCGAGCATTA
* * * *
57420773 GCGGCACTTTTCCAAAAATGACGCTAAAGCCCCGATCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCGAGCATTA
* *
57420814 GCGGCGCTTTTCCAAAAACGCCGCTAAATCCCCGAACATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCGAGCATTA
* * *
57420855 ACAGCGCTTTTCCAGAAACGCCGCTAAAGCCCCGAGCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCGAGCATTA
57420896 GCGGCG-TTTTCTCAATAAACGC
1 GCGGCGCTTTTC-CAA-AAACGC
57420918 TCCTAATGCT
Statistics
Matches: 124, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
40 5 0.04
41 113 0.91
42 6 0.05
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.21
Consensus pattern (41 bp):
GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCGAGCATTA
Found at i:57427132 original size:135 final size:136
Alignment explanation
Indices: 57426953--57427231 Score: 420
Period size: 135 Copynumber: 2.1 Consensus size: 136
57426943 TTTTTAAAAC
* * * *
57426953 AAAATTTCGATTTTTTTTCAACTATTTCAAAGTAAAAGCTTTAATCTTTAAGAAAAATAGTGTTT
1 AAAATTTTGATTTTTTTTCAACTACTCCAAAATAAAAGCTTTAATCTTTAAGAAAAATAGTGTTT
*
57427018 TTTTTTAAAAGGAGAAAATTTAGATTTTGAAAAATAAAAATATG-TTTTTT-AGTTATTTTAAAG
66 TTTTTT-AAA-GAGAAAATTTAGATTTTGAAAAATAAAAATATGTTTTTTTAAGTCATTTTAAAG
57427081 GAAAGTTT
129 GAAAGTTT
* *
57427089 AAAATTTTGA-TTTTTTTCAACTACTCCAAAATAAAAGTTTTAATCTTTAAGAAAAATATTGTTT
1 AAAATTTTGATTTTTTTTCAACTACTCCAAAATAAAAGCTTTAATCTTTAAGAAAAATAGTGTTT
* *
57427153 TTTTTTAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTAAGTCATTTTAGAGGA
66 TTTTTTAAAGAGAAAATTTAGATTTTGAAAAATAAAAATATGTTTTTTTAAGTCATTTTAAAGGA
*
57427218 ACGTTT
131 AAGTTT
*
57427224 AAATTTTT
1 AAAATTTT
57427232 AAAATAAAGT
Statistics
Matches: 130, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
133 32 0.25
134 9 0.07
135 80 0.62
136 9 0.07
ACGTcount: A:0.40, C:0.05, G:0.11, T:0.44
Consensus pattern (136 bp):
AAAATTTTGATTTTTTTTCAACTACTCCAAAATAAAAGCTTTAATCTTTAAGAAAAATAGTGTTT
TTTTTTAAAGAGAAAATTTAGATTTTGAAAAATAAAAATATGTTTTTTTAAGTCATTTTAAAGGA
AAGTTT
Found at i:57427255 original size:30 final size:31
Alignment explanation
Indices: 57427221--57427283 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
57427211 TAGAGGAACG
57427221 TTTAAAT-TTTTAAAATAAAGTTTTGATTTT
1 TTTAAATATTTTAAAATAAAGTTTTGATTTT
* *
57427251 TTTAACTATTTTGAAATAAAGTTTTGATTTT
1 TTTAAATATTTTAAAATAAAGTTTTGATTTT
57427282 TT
1 TT
57427284 AGAAAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 6 0.20
31 24 0.80
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.57
Consensus pattern (31 bp):
TTTAAATATTTTAAAATAAAGTTTTGATTTT
Found at i:57427833 original size:25 final size:24
Alignment explanation
Indices: 57427805--57427851 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
57427795 TCACTTGCAT
57427805 TTATACA-TTATATATTTAATGTTAA
1 TTATACACTT-TAT-TTTAATGTTAA
*
57427830 TTATGCACTTTATTTTAATGTT
1 TTATACACTTTATTTTAATGTT
57427852 TTCTATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 9 0.45
26 2 0.10
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (24 bp):
TTATACACTTTATTTTAATGTTAA
Found at i:57428022 original size:3 final size:3
Alignment explanation
Indices: 57428008--57428037 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
57427998 GAATGAGGTG
*
57428008 TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
57428038 CATCATCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:57431290 original size:30 final size:30
Alignment explanation
Indices: 57431256--57431332 Score: 120
Period size: 30 Copynumber: 2.6 Consensus size: 30
57431246 GACACTTTTT
*
57431256 TTTAATTTGGTACTTAAG-TTTTGTTTTAGG
1 TTTAATTTGGTACTTAAGCCTTT-TTTTAGG
*
57431286 TTTAATTTGGTACCTAAGCCTTTTTTTAGG
1 TTTAATTTGGTACTTAAGCCTTTTTTTAGG
57431316 TTTAATTTGGTACTTAA
1 TTTAATTTGGTACTTAA
57431333 ATTTATTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
30 40 0.93
31 3 0.07
ACGTcount: A:0.22, C:0.08, G:0.17, T:0.53
Consensus pattern (30 bp):
TTTAATTTGGTACTTAAGCCTTTTTTTAGG
Found at i:57434811 original size:42 final size:42
Alignment explanation
Indices: 57434745--57434855 Score: 145
Period size: 42 Copynumber: 2.7 Consensus size: 42
57434735 CAAATGCCCC
* *
57434745 AACAAAAGCTC--AAAAGCTAAACAGAAACTCATAAAAGTTT
1 AACAAAAGCTCGTAAAAGCTGAACAGAAACTCATAAAAGTTA
* * * * *
57434785 AATAGAAGCTCGTAAGAGCTGAACAGAAACTCGTAAGAGTTA
1 AACAAAAGCTCGTAAAAGCTGAACAGAAACTCATAAAAGTTA
57434827 AACAAAAGCTCGTAAAAGCTGAACAGAAA
1 AACAAAAGCTCGTAAAAGCTGAACAGAAA
57434856 GTAAAACATG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 9 0.15
42 50 0.85
ACGTcount: A:0.50, C:0.16, G:0.17, T:0.16
Consensus pattern (42 bp):
AACAAAAGCTCGTAAAAGCTGAACAGAAACTCATAAAAGTTA
Found at i:57434817 original size:21 final size:21
Alignment explanation
Indices: 57434756--57434855 Score: 94
Period size: 21 Copynumber: 4.8 Consensus size: 21
57434746 ACAAAAGCTC
*
57434756 AAAAGCTAAACAGAAACTCAT
1 AAAAGCTAAACAGAAACTCGT
* * * *
57434777 AAAAGTTTAATAGAAGCTCGT
1 AAAAGCTAAACAGAAACTCGT
* *
57434798 AAGAGCTGAACAGAAACTCGT
1 AAAAGCTAAACAGAAACTCGT
* *
57434819 AAGAGTTAAACA-AAAGCTCGT
1 AAAAGCTAAACAGAAA-CTCGT
*
57434840 AAAAGCTGAACAGAAA
1 AAAAGCTAAACAGAAA
57434856 GTAAAACATG
Statistics
Matches: 62, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
20 3 0.05
21 56 0.90
22 3 0.05
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.17
Consensus pattern (21 bp):
AAAAGCTAAACAGAAACTCGT
Found at i:57439541 original size:18 final size:18
Alignment explanation
Indices: 57439518--57439554 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
57439508 AAATATGTAG
57439518 ATAAATATATAA-ACTAAT
1 ATAAATA-ATAATACTAAT
57439536 ATAAATAATAATACTAAT
1 ATAAATAATAATACTAAT
57439554 A
1 A
57439555 ATAATGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAATAATAATACTAAT
Found at i:57440758 original size:15 final size:14
Alignment explanation
Indices: 57440733--57440775 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 14
57440723 TATTTTTTGG
57440733 TTTTCATTATTTATA
1 TTTT-ATTATTTATA
57440748 TTATTATTATTTATA
1 TT-TTATTATTTATA
*
57440763 TTTTTTTATTTAT
1 TTTTATTATTTAT
57440776 TTGATTTGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 10 0.38
15 14 0.54
16 2 0.08
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTATTATTTATA
Found at i:57441281 original size:50 final size:50
Alignment explanation
Indices: 57441212--57441812 Score: 364
Period size: 50 Copynumber: 12.0 Consensus size: 50
57441202 AATCATTTTA
* * *
57441212 ACTGCAATGTCGGGAAAGTAAGATTCACCATTGTGGCTTTAATCTGCTTC
1 ACTGCAATGCCGGGGAAGTAAGATTCACCGTTGTGGCTTTAATCTGCTTC
* * ** * *
57441262 ACTCCATTGCCGGGGAAGTAAGATTCGTC-TTCGTGACTTTAATC--CTTTT
1 ACTGCAATGCCGGGGAAGTAAGATTCACCGTT-GTGGCTTTAATCTGC-TTC
* ** * * *
57441311 AGCTGCAATGTCGGAAAAGCAAGATTCAACGTTGTGGCTTTAATCTAC-TC
1 A-CTGCAATGCCGGGGAAGTAAGATTCACCGTTGTGGCTTTAATCTGCTTC
* * * * * * * * *
57441361 TACTGCACTGGCTGAGAGAGTGAGATTCATCGTTGTGACTTTAATCCT-TTTA
1 -ACTGCAATGCCGGGGA-AGTAAGATTCACCGTTGTGGCTTTAAT-CTGCTTC
* * *
57441413 ACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTC
1 ACTGCAATGCCGGGGAAGTAAGATTCACCGTTGTGGCTTTAATCTGCTTC
* * * * ** *
57441463 ACTGCATTGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTA
1 ACTGCAATGCCGGGGAAGTAAGATTCACCGTTGTGGCTTTAATCTGCTTC
* * * *
57441513 ACTGCAATGTCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATCTG-TTCC
1 ACTGCAATGCCGGGGAAGTAAGATTCACCGTTGTGGCTTTAATCTGCTT-C
** ** * * * * *
57441563 ACTGCACCGCC-TTGAAGGTAAGATTCACTGCTGTAGCTTTAATCT-TTTAA
1 ACTGCAATGCCGGGGAA-GTAAGATTCACCGTTGTGGCTTTAATCTGCTT-C
* * * *
57441613 ACTGCAATGTCAGGG-AGACAAGATTCACCGTTGTAGCTTTAATCTG-TTCC
1 ACTGCAATGCCGGGGAAG-TAAGATTCACCGTTGTGGCTTTAATCTGCTT-C
** * ** * * * *
57441663 ACTGCACCGCC-TGGAAGGTAAGATTTGCTGTTGTAGCTTTAATCT-TTTAA
1 ACTGCAATGCCGGGGAA-GTAAGATTCACCGTTGTGGCTTTAATCTGCTT-C
* * * * *
57441713 ACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCC
1 ACTGCAATGCCGGGGAAGTAAGATTCACCGTTGTGGCTTTAATCTGCTTC
* * * *
57441763 ACTGC-ATCGCCAGGGAAGTAGGATTCACTGCTGTGGCTTTAATCTGCTTC
1 ACTGCAAT-GCCGGGGAAGTAAGATTCACCGTTGTGGCTTTAATCTGCTTC
57441813 CTTACACTTG
Statistics
Matches: 415, Mismatches: 113, Indels: 46
0.72 0.20 0.08
Matches are distributed among these distances:
48 1 0.00
49 16 0.04
50 350 0.84
51 44 0.11
52 4 0.01
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (50 bp):
ACTGCAATGCCGGGGAAGTAAGATTCACCGTTGTGGCTTTAATCTGCTTC
Found at i:57441534 original size:100 final size:98
Alignment explanation
Indices: 57441199--57441807 Score: 631
Period size: 100 Copynumber: 6.1 Consensus size: 98
57441189 AGAGAGTGAT
* * *
57441199 TTTAATCATTTTAACTGCAATGTCGGGAAAGTAAGATTCACCATTGTGGCTTTAATCTGCTTCAC
1 TTTAATCTTTTTAACTGCAATGTCGGG-AAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCAC
* ** *
57441264 TCCATTGCCGGGGAAGTAAGATTCGTCT-TCGT-GAC
65 TGCACCGCC-GGGAAGTAAGATTCG-CTGTTGTAG-C
* * * * *
57441299 TTTAATCCTTTTAGCTGCAATGTCGGAAAAGCAAGATTCAACGTTGTGGCTTTAATCTAC-TCTA
1 TTTAATCTTTTTAACTGCAATGTCGG-GAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTC-A
* * * * *
57441363 CTGCACTGGCTGAGAGAGTGAGATTC-ATCGTTGT-GAC
64 CTGCAC-CGCCGGGA-AGTAAGATTCGCT-GTTGTAG-C
*
57441400 TTTAATCCTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCAC
1 TTTAATCTTTTTAACTGCAATGTCGGG-AAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCAC
**
57441465 TGCATTGCCGGGGAAGTAAGATTCGCTGTTGTAGC
65 TGCACCGCC-GGGAAGTAAGATTCGCTGTTGTAGC
*
57441500 TTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATCTG-TTCCA
1 TTTAATCTTTTTAACTGCAATGTC-GGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTT-CA
** * *
57441564 CTGCACCGCCTTGAAGGTAAGATTCACTGCTGTAGC
64 CTGCACCGCCGGGAA-GTAAGATTCGCTGTTGTAGC
* *
57441600 TTTAATCTTTTAAACTGCAATGTCAGGG-AGACAAGATTCACCGTTGTAGCTTTAATCTG-TTCC
1 TTTAATCTTTTTAACTGCAATGTC-GGGAAG-CAAGATTCACCGTTGTGGCTTTAATCTGCTT-C
* *
57441663 ACTGCACCGCCTGGAAGGTAAGATTTGCTGTTGTAGC
63 ACTGCACCGCCGGGAA-GTAAGATTCGCTGTTGTAGC
* * * *
57441700 TTTAATCTTTTAAACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCCAC
1 TTTAATCTTTTTAACTGCAATGTC-GGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCAC
* * * * *
57441765 TGCATCGCCAGGGAAGTAGGATTCACTGCTGTGGC
65 TGCACCGCC-GGGAAGTAAGATTCGCTGTTGTAGC
57441800 TTTAATCT
1 TTTAATCT
57441808 GCTTCCTTAC
Statistics
Matches: 439, Mismatches: 52, Indels: 36
0.83 0.10 0.07
Matches are distributed among these distances:
99 9 0.02
100 335 0.76
101 93 0.21
102 2 0.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (98 bp):
TTTAATCTTTTTAACTGCAATGTCGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCACT
GCACCGCCGGGAAGTAAGATTCGCTGTTGTAGC
Found at i:57441695 original size:200 final size:196
Alignment explanation
Indices: 57441199--57441807 Score: 737
Period size: 200 Copynumber: 3.0 Consensus size: 196
57441189 AGAGAGTGAT
* *
57441199 TTTAATCATTTTAACTGCAATGTCGGGAAAGTAAGATTCACCATTGTGGCTTTAATCTGCTTCAC
1 TTTAATC-TTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCAC
* * * * *
57441264 TCCATTGCCGGGGAAGTAAGATTCGTCT-TCGT-GACTTTAATCCTTTTAGCTGCAATGTCGGAA
65 TGCATTGCCGGGGAAGTAAGATTCG-CTGTTGTAG-CTTTAATCTTTTTAACTGCAATGTCGG-G
* * * * * *
57441327 AAGCAAGATTCAACGTTGTGGCTTTAATCTACTCTACTGCACTGGCTGAGAGAGTGAGATTCA-T
127 AAGCAAGATTCACCGTTGTGGCTTTAATCTGCTCCACTGCACCGCCTGA-AG-GTAAGATTCACT
*
57441391 CGTTGTGAC
190 -GCTGTG-C
57441400 TTTAATCCTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCAC
1 TTTAAT-CTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCAC
*
57441465 TGCATTGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAG
65 TGCATTGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTC-GGGAA
*
57441530 GCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTTGAAGGTAAGATTCACTGCT
129 GCAAGATTCACCGTTGTGGCTTTAATCTGCTCCACTGCACCGCC-TGAAGGTAAGATTCACTGCT
57441595 GTAGC
193 GT-GC
* *
57441600 TTTAATCTTTTAAACTGCAATGTCAGGGAGA-CAAGATTCACCGTTGTAGCTTTAATCTG-TTCC
1 TTTAATCTTTT-AACTGCAATGTC-GGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTT-C
** * * * *
57441663 ACTGCACCGCC-TGGAAGGTAAGATTTGCTGTTGTAGCTTTAATCTTTTAAACTGTAATGTCGGG
63 ACTGCATTGCCGGGGAA-GTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTC-GG
* * * *
57441727 GAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCCACTGCATCGCCAGGGAA-GTAGGATTCAC
126 GAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTCCACTGCACCGCC--TGAAGGTAAGATTCAC
57441791 TGCTGTGGC
189 TGCTGT-GC
57441800 TTTAATCT
1 TTTAATCT
57441808 GCTTCCTTAC
Statistics
Matches: 363, Mismatches: 33, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
199 11 0.03
200 183 0.50
201 162 0.45
202 7 0.02
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (196 bp):
TTTAATCTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCACT
GCATTGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGAAGC
AAGATTCACCGTTGTGGCTTTAATCTGCTCCACTGCACCGCCTGAAGGTAAGATTCACTGCTGTG
C
Found at i:57443126 original size:7 final size:7
Alignment explanation
Indices: 57443111--57443162 Score: 70
Period size: 7 Copynumber: 7.4 Consensus size: 7
57443101 AGCCTCTCCA
*
57443111 TTTCCTT
1 TTTCATT
57443118 TTTCATT
1 TTTCATT
*
57443125 TTTGATT
1 TTTCATT
57443132 TTTCA-T
1 TTTCATT
57443138 TTTCATGT
1 TTTCAT-T
57443146 TTTCATT
1 TTTCATT
57443153 TTTCATT
1 TTTCATT
57443160 TTT
1 TTT
57443163 TTTGACTCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
6 6 0.15
7 27 0.68
8 7 0.17
ACGTcount: A:0.12, C:0.13, G:0.04, T:0.71
Consensus pattern (7 bp):
TTTCATT
Found at i:57448910 original size:18 final size:18
Alignment explanation
Indices: 57448887--57448923 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
57448877 AAATATGTAG
57448887 ATAAATATATAA-ACTAAT
1 ATAAATA-ATAATACTAAT
57448905 ATAAATAATAATACTAAT
1 ATAAATAATAATACTAAT
57448923 A
1 A
57448924 ATAATGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAATAATAATACTAAT
Found at i:57450123 original size:19 final size:19
Alignment explanation
Indices: 57450099--57450143 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
57450089 TAACTGGACA
57450099 TTTTTGGACATTTAATTAT
1 TTTTTGGACATTTAATTAT
57450118 TTTTTGGACATTTAATTAT
1 TTTTTGGACATTTAATTAT
57450137 TTTTTGG
1 TTTTTGG
57450144 TTTTCATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.22, C:0.04, G:0.13, T:0.60
Consensus pattern (19 bp):
TTTTTGGACATTTAATTAT
Found at i:57450170 original size:17 final size:15
Alignment explanation
Indices: 57450150--57450202 Score: 65
Period size: 14 Copynumber: 3.5 Consensus size: 15
57450140 TTGGTTTTCA
57450150 TTATTTATATTTATATT
1 TTATTTATATTT-TA-T
57450167 TTATTT-TATTTTAT
1 TTATTTATATTTTAT
*
57450181 TT-TTTATATTTTGT
1 TTATTTATATTTTAT
57450195 TTATTTAT
1 TTATTTAT
57450203 TTGATTTGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 3 0.09
14 12 0.36
15 7 0.21
16 5 0.15
17 6 0.18
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (15 bp):
TTATTTATATTTTAT
Found at i:57450173 original size:5 final size:5
Alignment explanation
Indices: 57450150--57450209 Score: 54
Period size: 5 Copynumber: 12.2 Consensus size: 5
57450140 TTGGTTTTCA
* *
57450150 TTATT TATATT TATATT TTATT TTATT TTATT TT-TT ATATT TT-GT TTA-T
1 TTATT T-TATT T-TATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT
*
57450199 TTATT TGATT T
1 TTATT TTATT T
57450210 GGGCCGGGAA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
4 10 0.21
5 26 0.55
6 11 0.23
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (5 bp):
TTATT
Found at i:57450179 original size:23 final size:23
Alignment explanation
Indices: 57450153--57450200 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
57450143 GTTTTCATTA
*
57450153 TTTA-TATTTATATTTTATTTTAT
1 TTTATTATTTATATTTT-GTTTAT
*
57450176 TTTATTTTTTATATTTTGTTTAT
1 TTTATTATTTATATTTTGTTTAT
57450199 TT
1 TT
57450201 ATTTGATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (23 bp):
TTTATTATTTATATTTTGTTTAT
Found at i:57450204 original size:22 final size:23
Alignment explanation
Indices: 57450150--57450204 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
57450140 TTGGTTTTCA
* *
57450150 TTATTTA-TATTTATATTTTATT
1 TTATTTATTTTTTATATTTTAGT
57450172 TTATTTTATTTTTTATATTTT-GT
1 TTA-TTTATTTTTTATATTTTAGT
57450195 TTATTTATTT
1 TTATTTATTT
57450205 GATTTGGGCC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 10 0.34
23 8 0.28
24 11 0.38
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (23 bp):
TTATTTATTTTTTATATTTTAGT
Found at i:57451559 original size:21 final size:17
Alignment explanation
Indices: 57451510--57451555 Score: 76
Period size: 18 Copynumber: 2.7 Consensus size: 17
57451500 GATAATGTAC
57451510 AAAAAAT-GTATAAATA
1 AAAAAATAGTATAAATA
57451526 AAAAAATAGTATAAATTA
1 AAAAAATAGTATAAA-TA
57451544 AAAAAATAGTAT
1 AAAAAATAGTAT
57451556 TATATAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 7 0.25
17 7 0.25
18 14 0.50
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (17 bp):
AAAAAATAGTATAAATA
Found at i:57451729 original size:24 final size:23
Alignment explanation
Indices: 57451697--57451876 Score: 134
Period size: 23 Copynumber: 7.6 Consensus size: 23
57451687 TAATAGATGG
*
57451697 AAATTAAAATAATAATATATGAT
1 AAATTAAAATAATAATACATGAT
57451720 AAATTAAAA-AAGTAATTACACATGA-
1 AAATTAAAATAA-TAA-T--ACATGAT
*
57451745 AAACTTAGAATAATAATACAT-AT
1 AAA-TTAAAATAATAATACATGAT
*
57451768 AAAATTTAAAATAATAATAAATGAT
1 -AAA-TTAAAATAATAATACATGAT
* * *
57451793 GAATTTAAATAACAAATACATGAT
1 AAATTAAAATAA-TAATACATGAT
* **
57451817 AAATTTAAATAATGTTA-ATGAT
1 AAATTAAAATAATAATACATGAT
** * *
57451839 AAATTTAAAATAATAATATGTTAC
1 AAA-TTAAAATAATAATACATGAT
57451863 AAATTAAAATAATA
1 AAATTAAAATAATA
57451877 TTGATAATAA
Statistics
Matches: 126, Mismatches: 19, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
22 11 0.09
23 48 0.38
24 46 0.37
25 6 0.05
26 13 0.10
27 2 0.02
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (23 bp):
AAATTAAAATAATAATACATGAT
Found at i:57453032 original size:17 final size:17
Alignment explanation
Indices: 57453012--57453044 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
57453002 CTAGGGTCTA
57453012 ATTGGGTCTAGGATTGT
1 ATTGGGTCTAGGATTGT
57453029 ATTGGGTCTAGGATTG
1 ATTGGGTCTAGGATTG
57453045 GGTTAGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.06, G:0.36, T:0.39
Consensus pattern (17 bp):
ATTGGGTCTAGGATTGT
Found at i:57455663 original size:142 final size:142
Alignment explanation
Indices: 57455473--57455901 Score: 750
Period size: 142 Copynumber: 3.0 Consensus size: 142
57455463 ATTCAATTTG
* * * *
57455473 ACTCTTAGTATAAAGGCCTTCATGATATTTTTGAGTAGCATTTAGTATGATGGAAAGTAATCACC
1 ACTCTTAGTATAAAGGCCTCCATGATATTTTTGGGTAGCATTTGGTATGATGGAAAGTAATCACT
57455538 TTCCTAGAAATTTAATCAATTGGAAAGTGATTCTAACGTTTGGTATGTCAAATTTTATTTACTTT
66 TTCCTAGAAATTTAATCAATTGGAAAGTGATTCTAACGTTTGGTATGTCAAATTTTATTTACTTT
57455603 CCTTGGAATCTA
131 CCTTGGAATCTA
57455615 ACTCTTAGTATAAAGGCCTCCATGATATTTTTGGGTAGCATTTGGTATGATGGAAAGTAATCACT
1 ACTCTTAGTATAAAGGCCTCCATGATATTTTTGGGTAGCATTTGGTATGATGGAAAGTAATCACT
* * * *
57455680 TTTCTAGAAATTTAATCAATTGGAAAATGATTCTAACGTTTAGTATGTAAAATTTTATTTACTTT
66 TTCCTAGAAATTTAATCAATTGGAAAGTGATTCTAACGTTTGGTATGTCAAATTTTATTTACTTT
57455745 CCTTGGAATCTA
131 CCTTGGAATCTA
* *
57455757 ACTCTTAGTATAAAGGCCTCCATGATATTTTTGGGTAGCGTTTGGTATGATGGAAAATAATCACT
1 ACTCTTAGTATAAAGGCCTCCATGATATTTTTGGGTAGCATTTGGTATGATGGAAAGTAATCACT
*
57455822 TTCCTAGAAATTTAATCAATTGGAAAGTGATTCTAACGTTTGATATGTCAAATTTTATTTACTTT
66 TTCCTAGAAATTTAATCAATTGGAAAGTGATTCTAACGTTTGGTATGTCAAATTTTATTTACTTT
*
57455887 CCTTGGAATCGA
131 CCTTGGAATCTA
57455899 ACT
1 ACT
57455902 TTTCATTGAT
Statistics
Matches: 271, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
142 271 1.00
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (142 bp):
ACTCTTAGTATAAAGGCCTCCATGATATTTTTGGGTAGCATTTGGTATGATGGAAAGTAATCACT
TTCCTAGAAATTTAATCAATTGGAAAGTGATTCTAACGTTTGGTATGTCAAATTTTATTTACTTT
CCTTGGAATCTA
Found at i:57461793 original size:47 final size:47
Alignment explanation
Indices: 57461724--57461817 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
57461714 TCCTGTTTTA
57461724 AACACGTCATGAGATTCATTCTACCATATCCATCAACTATCTTCCCT
1 AACACGTCATGAGATTCATTCTACCATATCCATCAACTATCTTCCCT
57461771 AACACGTCATGAGATTCATTCTACCATATCCATCAACTATCTTCCCT
1 AACACGTCATGAGATTCATTCTACCATATCCATCAACTATCTTCCCT
57461818 TTTGTTTCCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.30, C:0.32, G:0.06, T:0.32
Consensus pattern (47 bp):
AACACGTCATGAGATTCATTCTACCATATCCATCAACTATCTTCCCT
Found at i:57462937 original size:18 final size:18
Alignment explanation
Indices: 57462911--57463037 Score: 155
Period size: 18 Copynumber: 6.9 Consensus size: 18
57462901 ACTTCACAAC
*
57462911 GGGTTCGCATACATATAA
1 GGGTTCACATACATATAA
* *
57462929 GGGTCCGCATACATATATAA
1 GGGTTCACATAC--ATATAA
*
57462949 GGGTTCATATACATATAA
1 GGGTTCACATACATATAA
* *
57462967 GGGTTCACATGCATATGA
1 GGGTTCACATACATATAA
* *
57462985 GGGTTCGCATGCATATAA
1 GGGTTCACATACATATAA
*
57463003 TGGTTCACATACATATAA
1 GGGTTCACATACATATAA
57463021 GGGTTCACATACATATA
1 GGGTTCACATACATATA
57463038 TACAATTTGT
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
18 79 0.84
20 15 0.16
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (18 bp):
GGGTTCACATACATATAA
Found at i:57463025 original size:54 final size:55
Alignment explanation
Indices: 57462911--57463037 Score: 175
Period size: 54 Copynumber: 2.3 Consensus size: 55
57462901 ACTTCACAAC
* *
57462911 GGGTTCGCATACATATAAGGGTCCGCATACATATATAAGGGTTCATATACATATAA
1 GGGTTCACATACATATAAGGGTCCGCATACA-ATATAAGGGTTCACATACATATAA
* * * * *
57462967 GGGTTCACATGCATATGAGGGTTCGCATGC-ATATAATGGTTCACATACATATAA
1 GGGTTCACATACATATAAGGGTCCGCATACAATATAAGGGTTCACATACATATAA
57463021 GGGTTCACATACATATA
1 GGGTTCACATACATATA
57463038 TACAATTTGT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 37 0.60
56 25 0.40
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (55 bp):
GGGTTCACATACATATAAGGGTCCGCATACAATATAAGGGTTCACATACATATAA
Found at i:57464242 original size:31 final size:31
Alignment explanation
Indices: 57464206--57464267 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
57464196 AGATAATTTT
57464206 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
*
57464237 AAAGAGTTTTATTATGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
57464268 TAATTTGCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.44
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:57464808 original size:11 final size:12
Alignment explanation
Indices: 57464787--57464816 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
57464777 AAGAAGAAGT
57464787 AAAAAGCGTAAA
1 AAAAAGCGTAAA
57464799 AAAAAG-GTAAA
1 AAAAAGCGTAAA
57464810 AAAAAGC
1 AAAAAGC
57464817 AAAAAGCGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.70, C:0.07, G:0.17, T:0.07
Consensus pattern (12 bp):
AAAAAGCGTAAA
Found at i:57470420 original size:31 final size:30
Alignment explanation
Indices: 57470379--57470440 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 30
57470369 TCTTAGATAA
57470379 TTTTAAAGAGTTTTATTAGGATTCAATTAC
1 TTTTAAAGAGTTTTATTAGGATTCAATTAC
57470409 TTTTAAAAGAGTTTTATTAGGATTCAATTAC
1 TTTT-AAAGAGTTTTATTAGGATTCAATTAC
57470440 T
1 T
57470441 CTTGTAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.34, C:0.06, G:0.13, T:0.47
Consensus pattern (30 bp):
TTTTAAAGAGTTTTATTAGGATTCAATTAC
Found at i:57472778 original size:20 final size:21
Alignment explanation
Indices: 57472740--57472781 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
57472730 ATACATGAAA
*
57472740 TTAAAAAAAATAACTCTTAAT
1 TTAAAAAAAATAACACTTAAT
*
57472761 TTAAAGAAAATAA-ACTTAAT
1 TTAAAAAAAATAACACTTAAT
57472781 T
1 T
57472782 ATCTAAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (21 bp):
TTAAAAAAAATAACACTTAAT
Found at i:57473597 original size:17 final size:18
Alignment explanation
Indices: 57473575--57473608 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
57473565 ACCAATAATT
57473575 TATTTTAA-TTTATTATA
1 TATTTTAATTTTATTATA
57473592 TATTTTAATTTTATTAT
1 TATTTTAATTTTATTAT
57473609 GCACATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTTTAATTTTATTATA
Found at i:57474085 original size:25 final size:25
Alignment explanation
Indices: 57474056--57474106 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
57474046 TTTAATCTGA
57474056 TATATTTATATGCTTAAATTTTGTT
1 TATATTTATATGCTTAAATTTTGTT
57474081 TATATTTATATGCTTAAATTTTGTT
1 TATATTTATATGCTTAAATTTTGTT
57474106 T
1 T
57474107 TACTCACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.04, G:0.08, T:0.61
Consensus pattern (25 bp):
TATATTTATATGCTTAAATTTTGTT
Found at i:57478736 original size:43 final size:42
Alignment explanation
Indices: 57478670--57478839 Score: 179
Period size: 43 Copynumber: 4.0 Consensus size: 42
57478660 ATAGGATTTC
*
57478670 CGATATGTG-TTATCGTGTAAGACCACGTTTGGGACGTTGGCAT
1 CGAT-TGTGATTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
* * *
57478713 CGACTTGTGTTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGA-TTGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
*
57478756 CGTATT-TGATT-CGTGTAAGACC-CTGTCTGGGTCAG-TGGCAT
1 CG-ATTGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
* *
57478797 CGATATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGAT-TGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
57478840 TGTACGAGTC
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
40 2 0.02
41 28 0.26
42 10 0.09
43 61 0.57
44 6 0.06
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (42 bp):
CGATTGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:57478837 original size:84 final size:84
Alignment explanation
Indices: 57478682--57478839 Score: 205
Period size: 84 Copynumber: 1.9 Consensus size: 84
57478672 ATATGTGTTA
* * * * *
57478682 TCGTGTAAGACCACGTTTGGGACGTTGGCATCGACTTGTGTTTACGTGTAAGACCATGTCTGGGA
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGATTACATGTAAGACCACGTCTAGGA
57478747 CATTGGCATCGTATTTGAT
66 CATTGGCATCGTATTTGAT
*
57478766 TCGTGTAAGACC-CTGTCTGGGTCAG-TGGCATCGA-TATGTGATTACATGTAAGACCACGTCTA
1 TCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGACT-TGTGATTACATGTAAGACCACGTCTA
*
57478828 GGACGTTGGCAT
63 GGACATTGGCAT
57478840 TGTACGAGTC
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
83 2 0.03
84 61 0.95
85 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (84 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGATTACATGTAAGACCACGTCTAGGA
CATTGGCATCGTATTTGAT
Found at i:57479029 original size:16 final size:17
Alignment explanation
Indices: 57479000--57479031 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
57478990 TGAATTGATG
57479000 ATATGAAGTTATGTGAA
1 ATATGAAGTTATGTGAA
57479017 ATATGAA-TTATGTGA
1 ATATGAAGTTATGTGA
57479032 TTGCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATATGAAGTTATGTGAA
Found at i:57483028 original size:109 final size:102
Alignment explanation
Indices: 57482843--57483185 Score: 322
Period size: 109 Copynumber: 3.2 Consensus size: 102
57482833 ATAATACTGA
* * * *
57482843 TATACGAAAAACGA-AAAAAAAATTTGGGTGCTGGCCTGTCAATGGGCGGCACCCAGTACAATTT
1 TATACGAAAAA-AATAAAAAAAATTTTGGTGCTGGCCTATCAATGGCCGGCACCCAGTACAATTT
* * *
57482907 AAAATTTTTTTTTCTTTTTTCTTTCATGTCAGAATTAGATATCAG
65 AAAA------ATTCTTTTTT-TTTCGTGTCAGAATCAGATATCAG
* *
57482952 TATACGAAAAAAATAAAAAAAATTTTGGTGCTGACCTATCAATGGCCGGCACCTAGTACAATTTT
1 TATACGAAAAAAATAAAAAAAATTTTGGTGCTGGCCTATCAATGGCCGGCACCCAGTACAA--TT
* *
57483017 TGAAAAA-----TTTTTTT-GTGTCAGAAACAGATATTAG
64 T-AAAAATTCTTTTTTTTTCGTGTCAGAATCAGATATCAG
**
57483051 TATACGAAAAAAATTAAAAAAAAAATTTTGGGTGCTGGCCTATCAATGGCCAACACCCAGTACAA
1 TATACGAAAAAAA-T--AAAAAAAATTTT-GGTGCTGGCCTATCAATGGCCGGCACCCAGTACAA
* *
57483116 TTTAAAAAAAATTCTTTCTTTTTTCGTGTCAAAATCAGATATCAA
62 TTT---AAAAATTCTTT-TTTTTTCGTGTCAGAATCAGATATCAG
*
57483161 TATACAAAAAAAATAAAAAAAATTT
1 TATACGAAAAAAATAAAAAAAATTT
57483186 GGATATTTGA
Statistics
Matches: 196, Mismatches: 21, Indels: 36
0.77 0.08 0.14
Matches are distributed among these distances:
99 29 0.15
100 4 0.02
101 7 0.04
102 12 0.06
103 36 0.18
107 11 0.06
108 2 0.01
109 60 0.31
110 28 0.14
111 3 0.02
112 4 0.02
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.31
Consensus pattern (102 bp):
TATACGAAAAAAATAAAAAAAATTTTGGTGCTGGCCTATCAATGGCCGGCACCCAGTACAATTTA
AAAATTCTTTTTTTTTCGTGTCAGAATCAGATATCAG
Found at i:57483046 original size:99 final size:103
Alignment explanation
Indices: 57482928--57483185 Score: 292
Period size: 103 Copynumber: 2.5 Consensus size: 103
57482918 TTCTTTTTTC
* **
57482928 TTTCATGTCAGAATTAGATATCAGTATACGAAAAAAATAAAAAAAATTTT-GGTGCTGACCTATC
1 TTTCGTGTCAGAAACAGATATCAGTATACGAAAAAAATAAAAAAAATTTTGGGTGCTGACCTATC
** * ***
57482992 AATGGCCGGCACCTAGTACAATTTTTGAAAAA-T-TTT
66 AATGGCCAACACCCAGTACAATTTAAAAAAAATTCTTT
* *
57483028 TTT-GTGTCAGAAACAGATATTAGTATACGAAAAAAATTAAAAAAAAAATTTTGGGTGCTGGCCT
1 TTTCGTGTCAGAAACAGATATCAGTATACGAAAAAAA-T--AAAAAAAATTTTGGGTGCTGACCT
57483092 ATCAATGGCCAACACCCAGTACAATTTAAAAAAAATTCTTTCTTT
63 ATCAATGGCCAACACCCAGTACAATTTAAAAAAAA----TTCTTT
* *
57483137 TTTCGTGTCA-AAATCAGATATCAATATACAAAAAAAATAAAAAAAATTT
1 TTTCGTGTCAGAAA-CAGATATCAGTATACGAAAAAAATAAAAAAAATTT
57483186 GGATATTTGA
Statistics
Matches: 132, Mismatches: 14, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
99 29 0.22
100 4 0.03
102 12 0.09
103 39 0.30
107 11 0.08
108 1 0.01
109 10 0.08
110 26 0.20
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.31
Consensus pattern (103 bp):
TTTCGTGTCAGAAACAGATATCAGTATACGAAAAAAATAAAAAAAATTTTGGGTGCTGACCTATC
AATGGCCAACACCCAGTACAATTTAAAAAAAATTCTTT
Found at i:57483371 original size:101 final size:100
Alignment explanation
Indices: 57483187--57483678 Score: 437
Period size: 99 Copynumber: 4.9 Consensus size: 100
57483177 AAAAAATTTG
* *
57483187 GATATTTGATTCTGACACGAAATTTTTTTTTTTAAAATTGTACTGGGTGCCGGTCATTGACAGGC
1 GATATCTGATTCTGACACGAAA-TTTTTTTTTT-AAATTGTACTGGGTGCCGGCCATTGACAGGC
* *
57483252 CAGCACCCAAAAAATTTTTTTTTATTTTTTTCGTATACT
64 CAACACCC--AAAATTTTTTTTTTTTTTTTTCGTATACT
* *
57483291 GATATCTGATTTTGACACGAAA-TTTTTTTTTAAATTGTACTGGGTGCCGGCCATTCACAGGCCA
1 GATATCTGATTCTGACACGAAATTTTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCA
* *
57483355 ACACCCAAAATTTTTTTTATTTTTTTTCGTATATT
66 ACACCCAAAATTTTTTTTTTTTTTTTTCGTATACT
** *
57483390 GATATCTGATTCTGACACGAAAAAAAAGAATTTTTTTTAAATTGTACTAGGTGCCGGCCATTGAC
1 GATATCTGATTCTGACACG-----AAA-TTTTTTTTTTAAATTGTACTGGGTGCCGGCCATTGAC
**
57483455 ---CC-A-A---AATTTTTATTTTTTTATTTTTTTCGTATACT
60 AGGCCAACACCCAAAATTT-TTTTTTT-TTTTTTTCGTATACT
* ***
57483490 GATATCTGATTCTGACATGGAAAAAAAAAGAATTTTTTTAAATTGTACTGGGTGCCGGCCATTGA
1 GATATCTGATTCTGACA-CG------AAATTTTTTTTTTAAATTGTACTGGGTGCCGGCCATTGA
* * *
57483555 CAGGCCAACACCCCAAA--------TTTTTTTTTCATATATT
59 CAGGCCAACACCCAAAATTTTTTTTTTTTTTTTTCGTATACT
* ** * *
57483589 GATATCTAACCCTGGCAC-AAATTTTTTTTTTAAATTGTACTGGGTGCTGGCCATTGACAGG-CA
1 GATATCTGATTCTGACACGAAATTTTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCA
*
57483652 AGCACCCAAAATTTTTTTTTTGTTTTT
66 A-CACCCAAAATTTTTTTTTTTTTTTT
57483679 CTTTTTTTCC
Statistics
Matches: 324, Mismatches: 36, Indels: 61
0.77 0.09 0.14
Matches are distributed among these distances:
90 3 0.01
91 47 0.15
98 5 0.02
99 83 0.26
100 33 0.10
101 72 0.22
102 18 0.06
103 2 0.01
104 25 0.08
105 1 0.00
106 34 0.10
109 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (100 bp):
GATATCTGATTCTGACACGAAATTTTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCA
ACACCCAAAATTTTTTTTTTTTTTTTTCGTATACT
Found at i:57483505 original size:100 final size:102
Alignment explanation
Indices: 57483366--57483555 Score: 323
Period size: 101 Copynumber: 1.9 Consensus size: 102
57483356 CACCCAAAAT
*
57483366 TTTTTTTATTTTTTTTCGTATATTGATATCTGATTCTGACA-CG-AAAAAAAAGAATTTTTTTTA
1 TTTTTTTATTTTTTTTCGTATACTGATATCTGATTCTGACATCGAAAAAAAAAGAA-TTTTTTTA
57483429 AATTGTACTAGGTGCCGGCCATTGACCCAAAATTTTTA
65 AATTGTACTAGGTGCCGGCCATTGACCCAAAATTTTTA
*
57483467 TTTTTTTA-TTTTTTTCGTATACTGATATCTGATTCTGACATGGAAAAAAAAAGAATTTTTTTAA
1 TTTTTTTATTTTTTTTCGTATACTGATATCTGATTCTGACATCGAAAAAAAAAGAATTTTTTTAA
*
57483531 ATTGTACTGGGTGCCGGCCATTGAC
66 ATTGTACTAGGTGCCGGCCATTGAC
57483556 AGGCCAACAC
Statistics
Matches: 84, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
100 31 0.37
101 42 0.50
102 11 0.13
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.44
Consensus pattern (102 bp):
TTTTTTTATTTTTTTTCGTATACTGATATCTGATTCTGACATCGAAAAAAAAAGAATTTTTTTAA
ATTGTACTAGGTGCCGGCCATTGACCCAAAATTTTTA
Found at i:57490755 original size:3 final size:3
Alignment explanation
Indices: 57490747--57490794 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
57490737 TGCTGGGTTG
*
57490747 TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
57490795 ACTCATAAGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:57498520 original size:13 final size:14
Alignment explanation
Indices: 57498488--57498520 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
57498478 GAGTTCATAA
57498488 ATTATTCAAGTATT
1 ATTATTCAAGTATT
*
57498502 ACTATTCAA-TATT
1 ATTATTCAAGTATT
57498515 ATTATT
1 ATTATT
57498521 TAGCATTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (14 bp):
ATTATTCAAGTATT
Found at i:57514949 original size:41 final size:41
Alignment explanation
Indices: 57514892--57515002 Score: 107
Period size: 41 Copynumber: 2.7 Consensus size: 41
57514882 GTATTAGACT
*
57514892 TTGAGTCTAGCAGGCTTCGTGCCAGTGTATGGAATCAGGCC
1 TTGAGCCTAGCAGGCTTCGTGCCAGTGTATGGAATCAGGCC
* * * * * *
57514933 TTGAGCCTAGTAGGCTTTGTGCCGGTGTATTGTATCAGG-T
1 TTGAGCCTAGCAGGCTTCGTGCCAGTGTATGGAATCAGGCC
* * **
57514973 TTTATACCTAGCAGGCTTTATGCCAGTGTA
1 TTGA-GCCTAGCAGGCTTCGTGCCAGTGTA
57515003 ATTGTAACAG
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
40 3 0.05
41 54 0.95
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (41 bp):
TTGAGCCTAGCAGGCTTCGTGCCAGTGTATGGAATCAGGCC
Found at i:57516122 original size:30 final size:30
Alignment explanation
Indices: 57516087--57516592 Score: 645
Period size: 30 Copynumber: 16.7 Consensus size: 30
57516077 GTATACATTT
*
57516087 TATACATTGCCAAATTGATTTGTATATAGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* *
57516117 TATACAATGCCGAATTGATTTGTATATAGC
1 TATACATTGCCGAATTGATTTGTATATAGA
* *
57516147 TATATATTGCCGAATTGATTTGTATATAGC
1 TATACATTGCCGAATTGATTTGTATATAGA
* * *
57516177 TATACATTGCCGAATTGATTCGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* *
57516207 TATACATTGCCAAATTGATTGGTATATAGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* * *
57516237 TATACATTG-CGAAATTCATTTGTATTTGGA
1 TATACATTGCCG-AATTGATTTGTATATAGA
* * *
57516267 TATACATTGCCGAATTGATTCGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* ** *
57516297 TATAAATTATCGAATTGATTGGTATATAGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* * * *
57516327 TATACATTACCGAATTGATCTGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* * * *
57516357 TATACATTGCCGAATTAATTCGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATATAGA
57516387 TATACATTGCCGAATTGATTTGTATATAGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* *
57516417 TATACATTGCCGAATTGATTTGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATATAGA
57516447 TATACATTGCCGAATTGATTTGTATATAGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* *
57516477 TATACATTGCCTAATTGATTTGTATATGGA
1 TATACATTGCCGAATTGATTTGTATATAGA
57516507 TATACATTGCCGAATTGATTTGTATATAGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* *
57516537 TATACATTGTCGAATTGATTTGTATATGTACACA
1 TATACATTGCCGAATTGATTTGTATA--T--AGA
*
57516571 TATATATTGCCGAATTGATTTG
1 TATACATTGCCGAATTGATTTG
57516593 AGCATTGGAT
Statistics
Matches: 417, Mismatches: 53, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
29 1 0.00
30 391 0.94
31 2 0.00
32 1 0.00
34 22 0.05
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.41
Consensus pattern (30 bp):
TATACATTGCCGAATTGATTTGTATATAGA
Found at i:57524544 original size:228 final size:227
Alignment explanation
Indices: 57523866--57524548 Score: 731
Period size: 228 Copynumber: 3.0 Consensus size: 227
57523856 TCCAATTAAG
* * * * ** *
57523866 ATGCAGATCTTCGTTAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGAGTTCCGACAC
1 ATGCAGATCTTCGTCAAAACCCTGACCGGCAAAACCATAACTTTGGAAGTCGAGAGTTCCGACAC
* * *
57523931 GATCGACAACGTTAAGGCGAAAATCCAAGACAAGGAAGGGATCCCACCAGACCAAC-AACGTCTC
66 GATCGACAACGTTAAGGCGAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAAAGGT-TC
* * *
57523995 ATCTTCGCCGGAAAACAGCTCGAAGATGGCCGGACCTTGGCCGATTACAACATCCAGAAGGAGTC
130 ATTTTCGCCGGGAAACAGCTCGAAGATGGACGGACCTTGGCCGATTACAACATCCAGAAGGAGTC
* * * *
57524060 CACCCTCCATCTCGTCCTCCGTCTACGTGGTGGC
195 CACCCTCCA-CTTGTCTTGCGTCTTCGTGGTGGC
* * * *
57524094 ATGCAGATCTTCGTCAAAACCCTGACCGGCAAGACCATAACTTTGGAAGTCGAAAGCTCTGACAC
1 ATGCAGATCTTCGTCAAAACCCTGACCGGCAAAACCATAACTTTGGAAGTCGAGAGTTCCGACAC
* * * * * *
57524159 CATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAGCAAAGGCTCA
66 GATCGACAACGTTAAGGCGAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAAAGGTTCA
* * * * *
57524224 TCTTT-GCCGGGAAACAACTCGAGGACGGTCGCACCTTGGCCGATTACAACATCCAGAAGGAGTC
131 T-TTTCGCCGGGAAACAGCTCGAAGATGGACGGACCTTGGCCGATTACAACATCCAGAAGGAGTC
* * * * * *
57524288 GACCCTCCATTTGGTATTGAGGCTTCGTGGTGGG
195 CACCCTCCACTT-GTCTTGCGTCTTCGTGGTGGC
* * ** * * * * *
57524322 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCCGATAC
1 ATGCAGATCTTCGTCAAAACCCTGACCGGCAAAACCATAACTTTGGAAGTCGAGAGTTCCGACAC
* * * * * * *
57524387 GATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCACCAGATCAGCAAAGGTTGA
66 GATCGACAACGTTAAGGCGAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAAAGGTTCA
* * * * * * * * *
57524452 TTTTCGCTGGGAAACAGTTGGAAGATGGAAGGACTTTGGCTGATTACAATATTCAGAAGGAATCC
131 TTTTCGCCGGGAAACAGCTCGAAGATGGACGGACCTTGGCCGATTACAACATCCAGAAGGAGTCC
*
57524517 ACTCTCCACCTTGTCTTGCGTCTTCGTGGTGG
196 ACCCTCCA-CTTGTCTTGCGTCTTCGTGGTGG
57524549 TTTCTAAGCT
Statistics
Matches: 369, Mismatches: 81, Indels: 10
0.80 0.18 0.02
Matches are distributed among these distances:
227 4 0.01
228 358 0.97
229 7 0.02
ACGTcount: A:0.29, C:0.26, G:0.25, T:0.20
Consensus pattern (227 bp):
ATGCAGATCTTCGTCAAAACCCTGACCGGCAAAACCATAACTTTGGAAGTCGAGAGTTCCGACAC
GATCGACAACGTTAAGGCGAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAAAGGTTCA
TTTTCGCCGGGAAACAGCTCGAAGATGGACGGACCTTGGCCGATTACAACATCCAGAAGGAGTCC
ACCCTCCACTTGTCTTGCGTCTTCGTGGTGGC
Found at i:57527769 original size:50 final size:50
Alignment explanation
Indices: 57527653--57527845 Score: 314
Period size: 50 Copynumber: 3.8 Consensus size: 50
57527643 GATAATAACA
* ** *
57527653 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
* **
57527704 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
57527754 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
57527804 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
57527846 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 98 0.74
51 34 0.26
ACGTcount: A:0.20, C:0.31, G:0.24, T:0.25
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:57527961 original size:13 final size:13
Alignment explanation
Indices: 57527940--57527969 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
57527930 GCTTGGATAA
57527940 TCATCAAATAAAT
1 TCATCAAATAAAT
*
57527953 TCATGAAATAAAT
1 TCATCAAATAAAT
57527966 TCAT
1 TCAT
57527970 AGTTACTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:57536319 original size:79 final size:78
Alignment explanation
Indices: 57536217--57536439 Score: 274
Period size: 79 Copynumber: 2.8 Consensus size: 78
57536207 GCTCCTCGTT
* *
57536217 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
57536282 ATTTAGTATCTCGCA
64 AATTAGTATCTCGCA
*
57536297 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
57536360 AATTAGTATCTCGCA
64 AATTAGTATCTCGCA
* * * * *
57536375 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
57536438 GA
63 GA
57536440 CATCATTCAA
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 48 0.38
79 57 0.45
80 20 0.16
81 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTATCTCGCA
Found at i:57536331 original size:39 final size:40
Alignment explanation
Indices: 57536217--57536439 Score: 275
Period size: 39 Copynumber: 5.7 Consensus size: 40
57536207 GCTCCTCGTT
* *
57536217 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* *
57536257 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
57536297 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
57536336 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
57536375 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
57536416 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57536440 CATCATTCAA
Statistics
Matches: 168, Mismatches: 7, Indels: 17
0.88 0.04 0.09
Matches are distributed among these distances:
38 2 0.01
39 91 0.54
40 64 0.38
41 11 0.07
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:57551182 original size:28 final size:28
Alignment explanation
Indices: 57551150--57551203 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
57551140 GTTAAGTTAG
* *
57551150 TTAACACTGTAGCTAAGGTTTATTTGTA
1 TTAACACTATAACTAAGGTTTATTTGTA
57551178 TTAACACTATAACTAAGGTTTATTTG
1 TTAACACTATAACTAAGGTTTATTTG
57551204 CATTTCAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (28 bp):
TTAACACTATAACTAAGGTTTATTTGTA
Found at i:57554498 original size:10 final size:10
Alignment explanation
Indices: 57554483--57554511 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
57554473 GAAATGTTTG
57554483 ATGATATAAT
1 ATGATATAAT
57554493 ATGATATAAT
1 ATGATATAAT
57554503 A-GATATAAT
1 ATGATATAAT
57554512 TGTTTTATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (10 bp):
ATGATATAAT
Found at i:57555700 original size:30 final size:30
Alignment explanation
Indices: 57555666--57555729 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
57555656 TGATTTGAGG
* *
57555666 CACAACCGTATGTTATAACTCAGTGTGTTA
1 CACAACCGTATGTCATAACTCAGTGAGTTA
* * *
57555696 CACAATCGTGTGTCATAAGTCAGTGAGTTA
1 CACAACCGTATGTCATAACTCAGTGAGTTA
57555726 CACA
1 CACA
57555730 GGCTGAGACA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (30 bp):
CACAACCGTATGTCATAACTCAGTGAGTTA
Found at i:57559333 original size:42 final size:42
Alignment explanation
Indices: 57559259--57559355 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
57559249 GTGTTTCAAG
* * * * *
57559259 TCAGTGAGTTACACGGCCTGACACGCGGGCGTGTGTGGCAAC
1 TCAGAGAGTTACACAGCCTGACACACGAGCGTGTGAGGCAAC
*
57559301 TCAGAGAGTTACACAGCCTGGCACACGAGCGTGTGAGGCAAC
1 TCAGAGAGTTACACAGCCTGACACACGAGCGTGTGAGGCAAC
57559343 TCA-ATGAGTTACA
1 TCAGA-GAGTTACA
57559356 TGGGTGATGA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 47 0.98
ACGTcount: A:0.26, C:0.25, G:0.31, T:0.19
Consensus pattern (42 bp):
TCAGAGAGTTACACAGCCTGACACACGAGCGTGTGAGGCAAC
Found at i:57563613 original size:43 final size:43
Alignment explanation
Indices: 57563577--57563775 Score: 263
Period size: 43 Copynumber: 4.6 Consensus size: 43
57563567 ACGCTACTAT
* * * *
57563577 AGAACAATACCTTTAACGGCGCTTTTCACGCAAACGCCGCTAT
1 AGAACAAGACCTTTAGCGGCGCTTTTCACACAAACGCCGCTAA
* * * *
57563620 AGAACAAGACTTTTATCGGCGCTTTTCCCACAAATGCCGCTAA
1 AGAACAAGACCTTTAGCGGCGCTTTTCACACAAACGCCGCTAA
* * *
57563663 AGATCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
1 AGAACAAGACCTTTAGCGGCGCTTTTCACACAAACGCCGCTAA
* *
57563706 AGAATAAGACCTTTAGCGACGCTTTTCACACAAACGCCGCTAA
1 AGAACAAGACCTTTAGCGGCGCTTTTCACACAAACGCCGCTAA
* *
57563749 AGAATAAGACCTTTAGCGACGCTTTTC
1 AGAACAAGACCTTTAGCGGCGCTTTTC
57563776 TATCATGACC
Statistics
Matches: 139, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 139 1.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (43 bp):
AGAACAAGACCTTTAGCGGCGCTTTTCACACAAACGCCGCTAA
Found at i:57568330 original size:20 final size:19
Alignment explanation
Indices: 57568305--57568370 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 19
57568295 AATATAAAAG
57568305 TTTAAAATATTTTCAAAATT
1 TTTAAAATATTTT-AAAATT
* *
57568325 TTTAAAAAAATTTAAAATCT
1 TTTAAAATATTTTAAAAT-T
57568345 TTTAAAATTCATTTT-AAATT
1 TTTAAAA-T-ATTTTAAAATT
57568365 TTTAAA
1 TTTAAA
57568371 TCACGAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 5 0.13
20 26 0.67
21 4 0.10
22 4 0.10
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (19 bp):
TTTAAAATATTTTAAAATT
Found at i:57568898 original size:14 final size:14
Alignment explanation
Indices: 57568875--57568959 Score: 59
Period size: 13 Copynumber: 6.0 Consensus size: 14
57568865 AACACTAGTT
57568875 AATC-TAAACCCTA
1 AATCATAAACCCTA
57568888 AATCATAAA-CCTA
1 AATCATAAACCCTA
* *
57568901 AATCCTAAAACCTTAA
1 AATCAT-AAACCCT-A
* *
57568917 AACCATAAACCCTT
1 AATCATAAACCCTA
57568931 AA-CATATAACCTCTA
1 AATCATA-AACC-CTA
* *
57568946 AACCTTAAACCCTA
1 AATCATAAACCCTA
57568960 GCCTTTAAAC
Statistics
Matches: 57, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
13 17 0.30
14 16 0.28
15 16 0.28
16 8 0.14
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24
Consensus pattern (14 bp):
AATCATAAACCCTA
Done.