Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 194 of 230
Found at i:58414838 original size:90 final size:89
Alignment explanation
Indices: 58414723--58415054 Score: 385
Period size: 90 Copynumber: 3.7 Consensus size: 89
58414713 CGGAATTGAA
* ** * * * *
58414723 TAAGACCATAGTTGAAAGAAATTATGACATCATACTAGAACCGAGTAAAACCATAGCTGAAAAAC
1 TAAGACCATAGCTGAAAGACGTTATGGCATCATATTATAA-CGAGTAAGACCATAGCTGAAAAAC
* *
58414788 GTTATGGCATCACGATTTTAACAAG
65 ATTATGGCATCACGATTTTAACGAG
* * *
58414813 TAAGATCATAGCTGAAAGACGTTATGGCATCATGATTTTAACGAGTAAGACCATAGCTGAAATAC
1 TAAGACCATAGCTGAAAGACGTTATGGCATCAT-ATTATAACGAGTAAGACCATAGCTGAAAAAC
* *
58414878 ATTATGGCATCACGAGTTTAATGAG
65 ATTATGGCATCACGATTTTAACGAG
* * * *
58414903 TAAGACCATAGCTAAAAGACGTTATGGCATCACGATTCTAACGAGTAAGACCATAGCTGAAAGAC
1 TAAGACCATAGCTGAAAGACGTTATGGCATCA-TATTATAACGAGTAAGACCATAGCTGAAAAAC
* * *
58414968 ACTATAGCATCACGATTCTAACGAG
65 ATTATGGCATCACGATTTTAACGAG
* * * * * *
58414993 TAAGACCATAGTTGAAAGACGCTATGGCATCACGATTCTAACAAGTAAGACTATAGCTGAAA
1 TAAGACCATAGCTGAAAGACGTTATGGCATCA-TATTATAACGAGTAAGACCATAGCTGAAA
58415055 GATGCTATGG
Statistics
Matches: 211, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
90 207 0.98
91 4 0.02
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (89 bp):
TAAGACCATAGCTGAAAGACGTTATGGCATCATATTATAACGAGTAAGACCATAGCTGAAAAACA
TTATGGCATCACGATTTTAACGAG
Found at i:58415025 original size:45 final size:45
Alignment explanation
Indices: 58414764--58415113 Score: 409
Period size: 45 Copynumber: 7.8 Consensus size: 45
58414754 ATACTAGAAC
* * * *
58414764 CGAGTAAAACCATAGCTGAAAAACGTTATGGCATCACGATTTTAA
1 CGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCTAA
* * * * *
58414809 CAAGTAAGATCATAGCTGAAAGACGTTATGGCATCATGATTTTAA
1 CGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCTAA
* **
58414854 CGAGTAAGACCATAGCTGAAATACATTATGGCATCACGAGTT-TAA
1 CGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGA-TTCTAA
* * *
58414899 TGAGTAAGACCATAGCTAAAAGACGTTATGGCATCACGATTCTAA
1 CGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCTAA
* *
58414944 CGAGTAAGACCATAGCTGAAAGACACTATAGCATCACGATTCTAA
1 CGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCTAA
*
58414989 CGAGTAAGACCATAGTTGAAAGACGCTATGGCATCACGATTCTAA
1 CGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCTAA
* * * * *
58415034 CAAGTAAGACTATAGCTGAAAGATGCTATGGCATCATGAATC-AGA
1 CGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCTA-A
* * * *
58415079 CGAATAAGATCAT-GATTGAAAGACACTATGGCATC
1 CGAGTAAGACCATAG-CTGAAAGACGCTATGGCATC
58415114 CTTCAACCTT
Statistics
Matches: 266, Mismatches: 35, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
44 4 0.02
45 260 0.98
46 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.24
Consensus pattern (45 bp):
CGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTCTAA
Found at i:58421732 original size:51 final size:52
Alignment explanation
Indices: 58421655--58421783 Score: 174
Period size: 52 Copynumber: 2.5 Consensus size: 52
58421645 CGGATACCCG
* * *
58421655 GTGGCCTGCATATAGTACCAGC-CTTGT-AGCCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCA-CACTTGTGA-CAAAAGCTATCCTTCTTCACAAA
* *
58421706 GTGGCCTTCACATAGTACCACACTTGTGACAAAAGCTATCTTTCTTTACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACAAAAGCTATCCTTCTTCACAAA
58421758 GTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
58421784 AGTCACTAAT
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
50 1 0.01
51 31 0.44
52 38 0.54
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTGACAAAAGCTATCCTTCTTCACAAA
Found at i:58428973 original size:52 final size:52
Alignment explanation
Indices: 58428865--58429042 Score: 215
Period size: 52 Copynumber: 3.5 Consensus size: 52
58428855 CGGATACCCG
* * * *
58428865 GTGGCCTGCACATAGTACCACCCTTG-AAGCCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCTTTCTTCACAAA
*
58428916 GTGGCCTTCACACAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
* *
58428968 GTGGCCTTCACATAGTACCACACTTGTGATC-AAGTTATCTATTC-T--CAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCT-TTCTTCACAAA
* *
58429017 GTGTCCGTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
58429043 AGTCACTAAT
Statistics
Matches: 114, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
49 28 0.25
51 41 0.36
52 45 0.39
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
Found at i:58431644 original size:25 final size:25
Alignment explanation
Indices: 58431616--58431665 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
58431606 CTAATAGGCT
*
58431616 AAACATCCCTCCAAAAACACACTTG
1 AAACATACCTCCAAAAACACACTTG
*
58431641 AAACATACCTCCAAAAACACGCTTG
1 AAACATACCTCCAAAAACACACTTG
58431666 GGCACTAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.44, C:0.34, G:0.06, T:0.16
Consensus pattern (25 bp):
AAACATACCTCCAAAAACACACTTG
Found at i:58433125 original size:36 final size:36
Alignment explanation
Indices: 58433085--58433156 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
58433075 GAGAAAACTA
*
58433085 GATAAAACTCTAAGCTAAAACTAATTTAGTGTGGCC
1 GATAAAACCCTAAGCTAAAACTAATTTAGTGTGGCC
58433121 GATAAAACCCTAAGCTAAAACTAATTTAGTGTGGCC
1 GATAAAACCCTAAGCTAAAACTAATTTAGTGTGGCC
58433157 TCCTTTTCTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (36 bp):
GATAAAACCCTAAGCTAAAACTAATTTAGTGTGGCC
Found at i:58433397 original size:21 final size:21
Alignment explanation
Indices: 58433373--58433412 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
58433363 GCTTCTTGGC
*
58433373 AAGTGGATATTGCGATACCCA
1 AAGTGGATATCGCGATACCCA
*
58433394 AAGTGGTTATCGCGATACC
1 AAGTGGATATCGCGATACC
58433413 ACTGAAGGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (21 bp):
AAGTGGATATCGCGATACCCA
Found at i:58456192 original size:6 final size:6
Alignment explanation
Indices: 58456177--58456218 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
58456167 CAATGGTATA
* * *
58456177 TATATC TATATG TATATG TATATG TATATC TATATC TATATC
1 TATATC TATATC TATATC TATATC TATATC TATATC TATATC
58456219 CAGTGTTGCT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (6 bp):
TATATC
Found at i:58456198 original size:12 final size:12
Alignment explanation
Indices: 58456177--58456218 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
58456167 CAATGGTATA
58456177 TATATCTATATG
1 TATATCTATATG
*
58456189 TATATGTATATG
1 TATATCTATATG
*
58456201 TATATCTATATC
1 TATATCTATATG
58456213 TATATC
1 TATATC
58456219 CAGTGTTGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (12 bp):
TATATCTATATG
Found at i:58458409 original size:14 final size:14
Alignment explanation
Indices: 58458390--58458429 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
58458380 TTGATTGCCA
58458390 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
58458404 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
58458418 GGAAAATGTTTT
1 GTAAAATGTTTT
58458430 ACTTTTATGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:58462188 original size:23 final size:23
Alignment explanation
Indices: 58462162--58462260 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
58462152 ATAACTGCAA
58462162 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
58462185 CACTGAAATGTAGCCTAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
58462208 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
58462231 CACTGAAACGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
58462254 CACTGAT
1 CACTGAT
58462261 CAATAACACT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:58462229 original size:46 final size:46
Alignment explanation
Indices: 58462162--58462260 Score: 171
Period size: 46 Copynumber: 2.2 Consensus size: 46
58462152 ATAACTGCAA
* *
58462162 CACTGATATGTAGCCGAAGCTACCACTGAAATGTAGCCTAAGCTAC
1 CACTGATATGTAGCCGAAGCTACCACTGAAACGTAGCCGAAGCTAC
*
58462208 CACTGTTATGTAGCCGAAGCTACCACTGAAACGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTACCACTGAAACGTAGCCGAAGCTAC
58462254 CACTGAT
1 CACTGAT
58462261 CAATAACACT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.21
Consensus pattern (46 bp):
CACTGATATGTAGCCGAAGCTACCACTGAAACGTAGCCGAAGCTAC
Found at i:58470856 original size:6 final size:6
Alignment explanation
Indices: 58470841--58470893 Score: 79
Period size: 6 Copynumber: 8.7 Consensus size: 6
58470831 AAGTTTCCAC
* *
58470841 AAATGG AAATGA AAATGG AAATGA AAATGA AAATGA AAATGA AAATGGA
1 AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA AAAT-GA
58470890 AAAT
1 AAAT
58470894 TGCAATCCTA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
6 37 0.86
7 6 0.14
ACGTcount: A:0.62, C:0.00, G:0.21, T:0.17
Consensus pattern (6 bp):
AAATGA
Found at i:58474553 original size:6 final size:6
Alignment explanation
Indices: 58474544--58474568 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
58474534 GTAAAAGTGA
58474544 ATGTGT ATGTGT ATGTGT ATGTGT A
1 ATGTGT ATGTGT ATGTGT ATGTGT A
58474569 AATAAAGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (6 bp):
ATGTGT
Found at i:58476175 original size:24 final size:24
Alignment explanation
Indices: 58476148--58476203 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
58476138 AATATTTTAA
*
58476148 TATATAAT-ATTAATTTTAAATATT
1 TATA-AATAATTAATATTAAATATT
* *
58476172 TATAAGTAATTAATATTAATTATT
1 TATAAATAATTAATATTAAATATT
58476196 TATTAAAT
1 TA-TAAAT
58476204 TTAATTAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 2 0.08
24 20 0.77
25 4 0.15
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
TATAAATAATTAATATTAAATATT
Found at i:58480190 original size:6 final size:6
Alignment explanation
Indices: 58480174--58480217 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
58480164 ACGGTGGTGC
* * * *
58480174 TGGAGG GGGAGG TGGAGG TGGAGG AGGAGG CGGAGG AGGAGG TG
1 TGGAGG TGGAGG TGGAGG TGGAGG TGGAGG TGGAGG TGGAGG TG
58480218 CCTCTGGTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.20, C:0.02, G:0.68, T:0.09
Consensus pattern (6 bp):
TGGAGG
Found at i:58480658 original size:6 final size:6
Alignment explanation
Indices: 58480649--58480680 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
58480639 TGGTGGTGGG
*
58480649 GGAGGA GGAGGT GGAGGT GGAGGT GGAGGT GG
1 GGAGGT GGAGGT GGAGGT GGAGGT GGAGGT GG
58480681 GGCTAAAGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.69, T:0.12
Consensus pattern (6 bp):
GGAGGT
Found at i:58480751 original size:6 final size:6
Alignment explanation
Indices: 58480740--58480770 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
58480730 GTTGGGACTA
*
58480740 GTGGAG GTGGAG GTGGAG GTGAAG GTGGAG G
1 GTGGAG GTGGAG GTGGAG GTGGAG GTGGAG G
58480771 AGGTGGCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.19, C:0.00, G:0.65, T:0.16
Consensus pattern (6 bp):
GTGGAG
Found at i:58480870 original size:12 final size:12
Alignment explanation
Indices: 58480850--58480896 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
58480840 CATAGAGGTG
58480850 GGAGGTGGTGGT
1 GGAGGTGGTGGT
*
58480862 GGCGGTGGTGGT
1 GGAGGTGGTGGT
* *
58480874 GGAGATGGAGGT
1 GGAGGTGGTGGT
*
58480886 GGGGGTGGTGG
1 GGAGGTGGTGG
58480897 AAGCTCTAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.09, C:0.02, G:0.68, T:0.21
Consensus pattern (12 bp):
GGAGGTGGTGGT
Found at i:58481034 original size:18 final size:18
Alignment explanation
Indices: 58481013--58481048 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
58481003 GGTGGTTCGA
* *
58481013 GTGGAGGTGGAGGCGGAG
1 GTGGAAGTGGAGGAGGAG
58481031 GTGGAAGTGGAGGAGGAG
1 GTGGAAGTGGAGGAGGAG
58481049 AAGGGATGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.03, G:0.64, T:0.11
Consensus pattern (18 bp):
GTGGAAGTGGAGGAGGAG
Found at i:58501731 original size:17 final size:17
Alignment explanation
Indices: 58501709--58501747 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
58501699 TATAATCAAT
58501709 TTTAAAATTTTAATATA
1 TTTAAAATTTTAATATA
58501726 TTTAAAATTTTAATATA
1 TTTAAAATTTTAATATA
*
58501743 CTTAA
1 TTTAA
58501748 TATATATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTAAAATTTTAATATA
Found at i:58502082 original size:14 final size:15
Alignment explanation
Indices: 58502052--58502083 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
58502042 TCTCCAAATT
58502052 TTTAAGTTTTCAAAA
1 TTTAAGTTTTCAAAA
58502067 TTTAAGTTTT-AAAA
1 TTTAAGTTTTCAAAA
58502081 TTT
1 TTT
58502084 TTATTACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (15 bp):
TTTAAGTTTTCAAAA
Found at i:58502212 original size:126 final size:126
Alignment explanation
Indices: 58501987--58502235 Score: 462
Period size: 126 Copynumber: 2.0 Consensus size: 126
58501977 TGAAAAACAT
*
58501987 GACTCGAAATACCCATTTCAGAAATCAAAACTCGTTTCTCCAAAGTTTCAAAGTTTCTCCAAATT
1 GACTCGAAATACCCATTTCAAAAATCAAAACTCGTTTCTCCAAAGTTTCAAAGTTTCTCCAAATT
*
58502052 TTTAAGTTTTCAAAATTTAAGTTTTAAAATTTTTATTACAAATTTCAAATTACGATTACAG
66 TTTAAGTTTTCAAAATTTAAATTTTAAAATTTTTATTACAAATTTCAAATTACGATTACAG
* *
58502113 GACTCTAAATACCCATTTCAAAAATCAAAACTTGTTTCTCCAAAGTTTCAAAGTTTCTCCAAATT
1 GACTCGAAATACCCATTTCAAAAATCAAAACTCGTTTCTCCAAAGTTTCAAAGTTTCTCCAAATT
58502178 TTTAAGTTTTCAAAATTTAAATTTTAAAATTTTTATTACAAATTTCAAATTACGATTA
66 TTTAAGTTTTCAAAATTTAAATTTTAAAATTTTTATTACAAATTTCAAATTACGATTA
58502236 TCTCATTCCA
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
126 119 1.00
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.39
Consensus pattern (126 bp):
GACTCGAAATACCCATTTCAAAAATCAAAACTCGTTTCTCCAAAGTTTCAAAGTTTCTCCAAATT
TTTAAGTTTTCAAAATTTAAATTTTAAAATTTTTATTACAAATTTCAAATTACGATTACAG
Found at i:58509674 original size:14 final size:15
Alignment explanation
Indices: 58509644--58509675 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
58509634 TCTCCAAATT
58509644 TTTAAGTTTTCAAAA
1 TTTAAGTTTTCAAAA
58509659 TTTAAGTTTT-AAAA
1 TTTAAGTTTTCAAAA
58509673 TTT
1 TTT
58509676 TTATTACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (15 bp):
TTTAAGTTTTCAAAA
Found at i:58509804 original size:126 final size:126
Alignment explanation
Indices: 58509579--58509827 Score: 471
Period size: 126 Copynumber: 2.0 Consensus size: 126
58509569 TGAAAAACAT
58509579 GACTCGAAATACCCATTTCAAAAATCAAAACTCGTTTCTCCAAAGTTTCAAAGTTTCTCCAAATT
1 GACTCGAAATACCCATTTCAAAAATCAAAACTCGTTTCTCCAAAGTTTCAAAGTTTCTCCAAATT
*
58509644 TTTAAGTTTTCAAAATTTAAGTTTTAAAATTTTTATTACAAATTTCAAATTACGATTACAG
66 TTTAAGTTTTCAAAATTTAAATTTTAAAATTTTTATTACAAATTTCAAATTACGATTACAG
* *
58509705 GACTCTAAATACCCATTTCAAAAATCAAAACTTGTTTCTCCAAAGTTTCAAAGTTTCTCCAAATT
1 GACTCGAAATACCCATTTCAAAAATCAAAACTCGTTTCTCCAAAGTTTCAAAGTTTCTCCAAATT
58509770 TTTAAGTTTTCAAAATTTAAATTTTAAAATTTTTATTACAAATTTCAAATTACGATTA
66 TTTAAGTTTTCAAAATTTAAATTTTAAAATTTTTATTACAAATTTCAAATTACGATTA
58509828 TCATATATTT
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 120 1.00
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (126 bp):
GACTCGAAATACCCATTTCAAAAATCAAAACTCGTTTCTCCAAAGTTTCAAAGTTTCTCCAAATT
TTTAAGTTTTCAAAATTTAAATTTTAAAATTTTTATTACAAATTTCAAATTACGATTACAG
Found at i:58509970 original size:8 final size:8
Alignment explanation
Indices: 58509943--58510014 Score: 54
Period size: 9 Copynumber: 8.2 Consensus size: 8
58509933 AAAGAGAAAA
58509943 AAAAATTTT
1 AAAAA-TTT
*
58509952 AATATATTT
1 AA-AAATTT
58509961 AAAAATTT
1 AAAAATTT
58509969 AAAAATTTT
1 AAAAA-TTT
*
58509978 AAAAACTTAA
1 AAAAA-TT-T
58509988 AAAAATTT
1 AAAAATTT
*
58509996 AAATATATT
1 AAAAAT-TT
*
58510005 AAAATTTT
1 AAAAATTT
58510013 AA
1 AA
58510015 TATACTTAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
8 19 0.37
9 25 0.49
10 7 0.14
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (8 bp):
AAAAATTT
Found at i:58509978 original size:17 final size:17
Alignment explanation
Indices: 58509943--58510014 Score: 65
Period size: 18 Copynumber: 4.1 Consensus size: 17
58509933 AAAGAGAAAA
* *
58509943 AAAAATTTTAATATATTT
1 AAAAATTTAAAAAT-TTT
58509961 AAAAATTTAAAAATTTT
1 AAAAATTTAAAAATTTT
* *
58509978 AAAAACTTAAAAAAATTT
1 AAAAA-TTTAAAAATTTT
*
58509996 AAATATATT-AAAATTTT
1 AAAAAT-TTAAAAATTTT
58510013 AA
1 AA
58510015 TATACTTAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
17 18 0.40
18 27 0.60
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (17 bp):
AAAAATTTAAAAATTTT
Found at i:58510023 original size:17 final size:16
Alignment explanation
Indices: 58509989--58510061 Score: 74
Period size: 16 Copynumber: 4.2 Consensus size: 16
58509979 AAAACTTAAA
58509989 AAAATTTAAATATATT
1 AAAATTTAAATATATT
*
58510005 AAAATTTTAATATACTT
1 AAAATTTAAATATA-TT
*
58510022 AATATATTAAAATATATT
1 AA-A-ATTTAAATATATT
*
58510040 AAAATTGTAAACATATTT
1 AAAATT-TAAATATA-TT
58510058 AAAA
1 AAAA
58510062 AAATTAAGTA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
16 16 0.34
17 11 0.23
18 11 0.23
19 9 0.19
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (16 bp):
AAAATTTAAATATATT
Found at i:58510035 original size:35 final size:34
Alignment explanation
Indices: 58509950--58510050 Score: 107
Period size: 35 Copynumber: 2.9 Consensus size: 34
58509940 AAAAAAAATT
58509950 TTAATATATTTAAAA-AT-TTAAAAATTTTAAAAAC
1 TTAATATA-TTAAAATATATT-AAAATTTTAAAAAC
* * * *
58509984 TTAAAAAAATTTAAATATATTAAAATTTTAATATAC
1 TT-AATATATTAAAATATATTAAAATTTTAA-AAAC
*
58510020 TTAATATATTAAAATATATTAAAATTGTAAA
1 TTAATATATTAAAATATATTAAAATTTTAAA
58510051 CATATTTAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
34 8 0.15
35 40 0.73
36 7 0.13
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (34 bp):
TTAATATATTAAAATATATTAAAATTTTAAAAAC
Found at i:58514982 original size:14 final size:14
Alignment explanation
Indices: 58514965--58514995 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
58514955 TTAATTTAGA
58514965 AAATTTAATTAATT
1 AAATTTAATTAATT
*
58514979 AAATTTAGTTAATT
1 AAATTTAATTAATT
58514993 AAA
1 AAA
58514996 AAATCAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
AAATTTAATTAATT
Found at i:58515748 original size:25 final size:25
Alignment explanation
Indices: 58515714--58515761 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
58515704 TTGGATATGC
58515714 TAGTTTTAATTTTT-TATTTAAAATT
1 TAGTTTTAATTTTTCT-TTTAAAATT
58515739 TAGTTTTAATTTTTCTTTTAAAA
1 TAGTTTTAATTTTTCTTTTAAAA
58515762 ATTATATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (25 bp):
TAGTTTTAATTTTTCTTTTAAAATT
Found at i:58517076 original size:19 final size:19
Alignment explanation
Indices: 58517052--58517089 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
58517042 TTTGGTTCGC
* *
58517052 TGTAATGGAATAGAGCTGT
1 TGTAATAGAATAGAACTGT
58517071 TGTAATAGAATAGAACTGT
1 TGTAATAGAATAGAACTGT
58517090 AATCAGTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (19 bp):
TGTAATAGAATAGAACTGT
Found at i:58518760 original size:6 final size:6
Alignment explanation
Indices: 58518751--58518827 Score: 145
Period size: 6 Copynumber: 12.8 Consensus size: 6
58518741 AAATAAAATT
*
58518751 CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA CTTAAA CTAAAA CTAAAA
1 CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA
58518799 CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
1 CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
58518828 GTCTAAAAGT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 69 1.00
ACGTcount: A:0.65, C:0.17, G:0.00, T:0.18
Consensus pattern (6 bp):
CTAAAA
Found at i:58518881 original size:9 final size:9
Alignment explanation
Indices: 58518867--58518923 Score: 73
Period size: 9 Copynumber: 6.4 Consensus size: 9
58518857 GTAGTGATTC
58518867 AATTCGGTT
1 AATTCGGTT
*
58518876 AATTCGGGT
1 AATTCGGTT
58518885 AATTCAGG-T
1 AATTC-GGTT
*
58518894 AATTCAGTT
1 AATTCGGTT
58518903 AATTCGG-T
1 AATTCGGTT
58518911 AATTCGGTT
1 AATTCGGTT
58518920 AATT
1 AATT
58518924 TTTAACCAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
8 9 0.21
9 31 0.74
10 2 0.05
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:58526571 original size:32 final size:32
Alignment explanation
Indices: 58526543--58526750 Score: 188
Period size: 32 Copynumber: 6.5 Consensus size: 32
58526533 ATATGATCAA
* * *
58526543 CACACAGCCATGAGTAACGGTAACATGATCAG
1 CACAAAGCCATCAGTAACGGTAACATGATCGG
* * *
58526575 CACAAAGCCATCAGTAGCCGTAATATGATCGG
1 CACAAAGCCATCAGTAACGGTAACATGATCGG
* * * *
58526607 CATACACCCATCAGTAACAGTGAA-ATGATCGG
1 CACAAAGCCATCAGTAACGGT-AACATGATCGG
* * *
58526639 CACACAGCCATTAGTAACGGTAATATGATCGG
1 CACAAAGCCATCAGTAACGGTAACATGATCGG
* *
58526671 CACAAAGCCATCAGTAACAGT-ACTATGATCGA
1 CACAAAGCCATCAGTAACGGTAAC-ATGATCGG
* * *
58526703 CACAAAGCTATCAGTAACGAT-ACTATGATTGG
1 CACAAAGCCATCAGTAACGGTAAC-ATGATCGG
* *
58526735 CACAAAACCATTAGTA
1 CACAAAGCCATCAGTA
58526751 GCATCGCAGC
Statistics
Matches: 145, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
31 3 0.02
32 140 0.97
33 2 0.01
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.20
Consensus pattern (32 bp):
CACAAAGCCATCAGTAACGGTAACATGATCGG
Found at i:58526623 original size:64 final size:63
Alignment explanation
Indices: 58526510--58526718 Score: 219
Period size: 64 Copynumber: 3.3 Consensus size: 63
58526500 AATGTGATTG
** * *
58526510 GCACAAAGCCATCAGTAGCAACG--ATATGATCAACACACAGCCATGAGTAACGGTAACATGATC
1 GCACAAAGCCATCAGTAGC--CGTAATATGATCGGCACACAGCCATCAGTAACAGTAACATGATC
* *
58526573 AGCACAAAGCCATCAGTAGCCGTAATATGATCGGCATACACCCATCAGTAACAGTGAA-ATGATC
1 -GCACAAAGCCATCAGTAGCCGTAATATGATCGGCACACAGCCATCAGTAACAGT-AACATGATC
* * * * *
58526637 GGCACACAGCCATTAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACAGT-ACTATGATC
1 -GCACAAAGCCATCAGTAGCCGTAATATGATCGGCACACAGCCATCAGTAACAGTAAC-ATGATC
*
58526701 GACACAAAGCTATCAGTA
1 G-CACAAAGCCATCAGTA
58526719 ACGATACTAT
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
62 3 0.02
63 1 0.01
64 116 0.95
65 2 0.02
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.18
Consensus pattern (63 bp):
GCACAAAGCCATCAGTAGCCGTAATATGATCGGCACACAGCCATCAGTAACAGTAACATGATC
Found at i:58526716 original size:96 final size:96
Alignment explanation
Indices: 58526511--58526720 Score: 267
Period size: 96 Copynumber: 2.2 Consensus size: 96
58526501 ATGTGATTGG
* *
58526511 CACAAAGCCATCAGTAGCAACGATATGATCAACACACAGCCATGAGTAACGGTAACATGATCAGC
1 CACAAAGCCATCAGTAACAACGAAATGATCAACACACAGCCATGAGTAACGGTAACATGATCAGC
* * *
58526576 ACAAAGCCATCAGTAGCCGTAATATGATCGG
66 ACAAAGCCATCAGTAACAGTAATATGATCGA
* * * ** ** * * *
58526607 CATACACCCATCAGTAACAGTGAAATGATCGGCACACAGCCATTAGTAACGGTAATATGATCGGC
1 CACAAAGCCATCAGTAACAACGAAATGATCAACACACAGCCATGAGTAACGGTAACATGATCAGC
*
58526672 ACAAAGCCATCAGTAACAGTACTATGATCGA
66 ACAAAGCCATCAGTAACAGTAATATGATCGA
*
58526703 CACAAAGCTATCAGTAAC
1 CACAAAGCCATCAGTAAC
58526721 GATACTATGA
Statistics
Matches: 94, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
96 94 1.00
ACGTcount: A:0.39, C:0.25, G:0.19, T:0.18
Consensus pattern (96 bp):
CACAAAGCCATCAGTAACAACGAAATGATCAACACACAGCCATGAGTAACGGTAACATGATCAGC
ACAAAGCCATCAGTAACAGTAATATGATCGA
Found at i:58526719 original size:64 final size:64
Alignment explanation
Indices: 58526533--58526750 Score: 217
Period size: 64 Copynumber: 3.4 Consensus size: 64
58526523 AGTAGCAACG
** * * * * *
58526533 ATATGATCAACACACAGCCATGAGTAACGGTAACATGATC-AGCACAAAGCCATCAGTAGCCGTA
1 ATATGATCGGCACAAAGCCATCAGTAACAGTAACATGATCGA-CACAAAGCCATCAGTAACGGTA
* * * * * *
58526597 ATATGATCGGCATACACCCATCAGTAACAGTGAA-ATGATCGGCACACAGCCATTAGTAACGGTA
1 ATATGATCGGCACAAAGCCATCAGTAACAGT-AACATGATCGACACAAAGCCATCAGTAACGGTA
* *
58526661 ATATGATCGGCACAAAGCCATCAGTAACAGT-ACTATGATCGACACAAAGCTATCAGTAACGATA
1 ATATGATCGGCACAAAGCCATCAGTAACAGTAAC-ATGATCGACACAAAGCCATCAGTAACGGTA
* * * *
58526725 CTATGATTGGCACAAAACCATTAGTA
1 ATATGATCGGCACAAAGCCATCAGTA
58526751 GCATCGCAGC
Statistics
Matches: 127, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
62 1 0.01
64 124 0.98
65 2 0.02
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (64 bp):
ATATGATCGGCACAAAGCCATCAGTAACAGTAACATGATCGACACAAAGCCATCAGTAACGGTA
Found at i:58526731 original size:96 final size:96
Alignment explanation
Indices: 58526511--58526750 Score: 259
Period size: 96 Copynumber: 2.5 Consensus size: 96
58526501 ATGTGATTGG
* * ** ** *
58526511 CACAAAGCCATCAGTAGCAACGATATGATCAACACACAGCCATGAGTAACGGTAACATGATCAGC
1 CACAAACCCATCAGTAACAGTGATATGATCGGCACACAGCCATTAGTAACGGTAACATGATCAGC
* * *
58526576 ACAAAGCCATCAGTAGCCGTAATATGATCGG
66 ACAAAGCCATCAGTAACAGTAATATGATCGA
* * * * *
58526607 CATACACCCATCAGTAACAGTGAAATGATCGGCACACAGCCATTAGTAACGGTAATATGATCGGC
1 CACAAACCCATCAGTAACAGTGATATGATCGGCACACAGCCATTAGTAACGGTAACATGATCAGC
*
58526672 ACAAAGCCATCAGTAACAGTACTATGATCGA
66 ACAAAGCCATCAGTAACAGTAATATGATCGA
* * * * *
58526703 CACAAAGCTATCAGTAAC-GAT-ACTATGATTGGCACAAAACCATTAGTA
1 CACAAACCCATCAGTAACAG-TGA-TATGATCGGCACACAGCCATTAGTA
58526751 GCATCGCAGC
Statistics
Matches: 118, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
95 2 0.02
96 116 0.98
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.19
Consensus pattern (96 bp):
CACAAACCCATCAGTAACAGTGATATGATCGGCACACAGCCATTAGTAACGGTAACATGATCAGC
ACAAAGCCATCAGTAACAGTAATATGATCGA
Found at i:58526782 original size:26 final size:26
Alignment explanation
Indices: 58526753--58526806 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
58526743 CATTAGTAGC
*
58526753 ATCGCAGCAAAGCTGCCAGCAACAGT
1 ATCGCAGCAAAGCTACCAGCAACAGT
* *
58526779 ATCGCAGCAAAGCTACCAGTAATAGT
1 ATCGCAGCAAAGCTACCAGCAACAGT
58526805 AT
1 AT
58526807 ATGTGGTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (26 bp):
ATCGCAGCAAAGCTACCAGCAACAGT
Found at i:58526823 original size:27 final size:26
Alignment explanation
Indices: 58526788--58526853 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
58526778 TATCGCAGCA
* *
58526788 AAGCTACCAGTAATAGT-ATATGTGGTC
1 AAGCCACCAGTAACAGTGAT-TGTGG-C
58526815 AAGCCACCAGTAACAGTGATTGTGGC
1 AAGCCACCAGTAACAGTGATTGTGGC
58526841 AGAGCCACCAGTA
1 A-AGCCACCAGTA
58526854 CAATACTTCC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 2 0.06
27 31 0.89
28 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
AAGCCACCAGTAACAGTGATTGTGGC
Found at i:58527100 original size:27 final size:27
Alignment explanation
Indices: 58527025--58527436 Score: 277
Period size: 27 Copynumber: 15.4 Consensus size: 27
58527015 GACAAAAATA
58527025 GTCA-TTTACCC-ACTA-GGGCATTACG
1 GTCATTTTACCCTAC-AGGGGCATTACG
* *
58527050 GTCATTTTA-CCTACAGGGGTATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
58527076 GTCATTTGACCCTACATGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
58527103 GTCATTTTACCCTACAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
58527130 GTCATTTTACCCTATAGAGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * * *
58527157 ATCATTTTATCCTATAGAGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
58527184 GCCATTTTACCCTATAGGGGAATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
58527211 GTCATTTTACCTTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * **
58527238 GTTATTTTACCCTACAAGGGTATTATA
1 GTCATTTTACCCTACAGGGGCATTACG
* * **
58527265 GTCATTTTACCTTACAGGGGTATTTTG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
58527292 GT-ATTCTA-CCTACGGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * * * *
58527317 ATTATTTTACCATA-TGAGAGCATTTCG
1 GTCATTTTACCCTACAG-GGGCATTACG
* * *
58527344 GT-TTTCTTACCC-ATC-GAGGGTATTTCG
1 GTCATT-TTACCCTA-CAG-GGGCATTACG
* * ** * *
58527371 ATTATTTTACCCTATGGGGGCATTTCA
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
58527398 GTCATTTTATCTTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
58527425 GTCATTTTACCC
1 GTCATTTTACCC
58527437 ATCGAGGGTA
Statistics
Matches: 311, Mismatches: 63, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
25 22 0.07
26 36 0.12
27 249 0.80
28 4 0.01
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:58527485 original size:27 final size:27
Alignment explanation
Indices: 58527228--58527507 Score: 146
Period size: 27 Copynumber: 10.4 Consensus size: 27
58527218 TACCTTACAG
* * *
58527228 GGGTATTACGGTTATTTTACCCTACAA
1 GGGTATTTCGGTTATTTTACCCTTCGA
* *
58527255 GGGTATTAT-AGTCATTTTA-CCTTAC-A
1 GGGTATT-TCGGTTATTTTACCCTT-CGA
* * * *
58527281 GGGGTATTTTGG-TATTCTA-CCTACGG
1 -GGGTATTTCGGTTATTTTACCCTTCGA
* *
58527307 GGGTATTTCGATTATTTTACCATAT-GA
1 GGGTATTTCGGTTATTTTACCCT-TCGA
* * *
58527334 GAGCATTTCGGTT-TTCTTACCCATCGA
1 GGGTATTTCGGTTATT-TTACCCTTCGA
* *
58527361 GGGTATTTCGATTATTTTACCCTAT-GG
1 GGGTATTTCGGTTATTTTACCCT-TCGA
* * * * **
58527388 GGGCATTTCAGTCATTTTA-TCTTATA
1 GGGTATTTCGGTTATTTTACCCTTCGA
* * * *
58527414 GGGGCATTACGGTCATTTTACCCATCGA
1 -GGGTATTTCGGTTATTTTACCCTTCGA
* *
58527442 GGGTATTTCGATCATTTTACCCTTCGA
1 GGGTATTTCGGTTATTTTACCCTTCGA
* * * *
58527469 GGGTATTTTGGTTATTTTACCTTTTGG
1 GGGTATTTCGGTTATTTTACCCTTCGA
58527496 GGGTATTTCGGT
1 GGGTATTTCGGT
58527508 CCAGATATTG
Statistics
Matches: 189, Mismatches: 49, Indels: 30
0.71 0.18 0.11
Matches are distributed among these distances:
25 11 0.06
26 24 0.13
27 148 0.78
28 6 0.03
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTTATTTTACCCTTCGA
Found at i:58527508 original size:81 final size:81
Alignment explanation
Indices: 58527093--58527491 Score: 205
Period size: 81 Copynumber: 5.0 Consensus size: 81
58527083 GACCCTACAT
* * * * *
58527093 GGGCATTACGGTCATTTTACCC-TACAAGGGCATTACGGTCATTTTACCCTAT-AGAGGCATTAC
1 GGGCATTACGGTCATTTTACCCAT-CGAGGGTATTTCGATCATTTTACCCTATGAG-GGCATTTC
58527156 -GATCATTTTATCC-TATAG
64 AG-TCATTTTA-CCTTATAG
* * * * * * * * * * *
58527174 AGGCATTACAGCCATTTTACCCTATAG-GGGAATTACGGTCATTTTACCTTA-CAGGGGTATTAC
1 GGGCATTACGGTCATTTTACCC-ATCGAGGGTATTTCGATCATTTTACCCTATGA-GGGCATTTC
* * * * *
58527237 GGTTATTTTACCCTACAA
64 AGTCATTTTACCTTATAG
* ** * * * * * * *
58527255 GGGTATTATAGTCATTTTA-CCTTAC-AGGGGTATTTTGGT-ATTCTA-CCTACGGGGGTATTTC
1 GGGCATTACGGTCATTTTACCCAT-CGA-GGGTATTTCGATCATTTTACCCTATGAGGGCATTTC
* *
58527316 -GATTATTTTACCATAT-G
64 AG-TCATTTTACCTTATAG
* * * * *
58527333 AGAGCATTTCGGT-TTTCTTACCCATCGAGGGTATTTCGATTATTTTACCCTATGGGGGCATTTC
1 -GGGCATTACGGTCATT-TTACCCATCGAGGGTATTTCGATCATTTTACCCTATGAGGGCATTTC
*
58527397 AGTCATTTTATCTTATAG
64 AGTCATTTTACCTTATAG
* **
58527415 GGGCATTACGGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCT-TCGAGGGTATTTTG
1 GGGCATTACGGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCTAT-GAGGGCATTTCA
*
58527479 GTTATTTTACCTT
65 GTCATTTTACCTT
58527492 TTGGGGGTAT
Statistics
Matches: 244, Mismatches: 53, Indels: 42
0.72 0.16 0.12
Matches are distributed among these distances:
78 3 0.01
79 45 0.18
80 19 0.08
81 170 0.70
82 6 0.02
83 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (81 bp):
GGGCATTACGGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCTATGAGGGCATTTCAG
TCATTTTACCTTATAG
Found at i:58529428 original size:12 final size:12
Alignment explanation
Indices: 58529411--58529445 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
58529401 CAAACCATTT
58529411 CAAATAAGCAAA
1 CAAATAAGCAAA
58529423 CAAATAAGCAAA
1 CAAATAAGCAAA
* *
58529435 TAAAGAAGCAA
1 CAAATAAGCAA
58529446 TCCTTACAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.66, C:0.14, G:0.11, T:0.09
Consensus pattern (12 bp):
CAAATAAGCAAA
Found at i:58530593 original size:9 final size:9
Alignment explanation
Indices: 58530579--58530638 Score: 84
Period size: 9 Copynumber: 6.4 Consensus size: 9
58530569 TTTGCTTAAA
58530579 AATTACCCG
1 AATTACCCG
*
58530588 AATTACCCAAA
1 AATTACCC--G
58530599 AATTACCCG
1 AATTACCCG
*
58530608 AATTACCTG
1 AATTACCCG
58530617 AATTACCCG
1 AATTACCCG
58530626 AATTACCCG
1 AATTACCCG
58530635 AATT
1 AATT
58530639 GTATCACTAC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
9 37 0.82
11 8 0.18
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.25
Consensus pattern (9 bp):
AATTACCCG
Found at i:58530601 original size:20 final size:20
Alignment explanation
Indices: 58530576--58530633 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
58530566 ATTTTTGCTT
58530576 AAAAATTACCCGAATTACCC
1 AAAAATTACCCGAATTACCC
58530596 AAAAATTACCCGAATTA-CC
1 AAAAATTACCCGAATTACCC
**
58530615 -TGAATTACCCGAATTACCC
1 AAAAATTACCCGAATTACCC
58530634 GAATTGTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
18 14 0.40
19 4 0.11
20 17 0.49
ACGTcount: A:0.41, C:0.29, G:0.07, T:0.22
Consensus pattern (20 bp):
AAAAATTACCCGAATTACCC
Found at i:58530668 original size:17 final size:17
Alignment explanation
Indices: 58530646--58530706 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
58530636 ATTGTATCAC
58530646 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
58530663 TACATAAATCTTTGAATCAC
1 TACAT-AA--TTAAAAACAT
58530683 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
58530700 TACATAA
1 TACATAA
58530707 GTCTTGAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 18 0.55
18 2 0.06
19 2 0.06
20 11 0.33
ACGTcount: A:0.52, C:0.15, G:0.02, T:0.31
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:58530687 original size:37 final size:37
Alignment explanation
Indices: 58530641--58530711 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
58530631 CCCGAATTGT
58530641 ATCACTACATAATTAAAAACATTACATAAATCTTTGA
1 ATCACTACATAATTAAAAACATTACATAAATCTTTGA
*
58530678 ATCACTACATAATTAAAAACATTACATAAGTCTT
1 ATCACTACATAATTAAAAACATTACATAAATCTT
58530712 GAAATTAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.48, C:0.17, G:0.03, T:0.32
Consensus pattern (37 bp):
ATCACTACATAATTAAAAACATTACATAAATCTTTGA
Found at i:58530725 original size:37 final size:37
Alignment explanation
Indices: 58530644--58530728 Score: 120
Period size: 37 Copynumber: 2.3 Consensus size: 37
58530634 GAATTGTATC
*
58530644 ACTACATAATTAAAAACATTACATAAATCTTTGAATC
1 ACTACATAATTAAAAACATTACATAAATCTTTGAATA
*
58530681 ACTACATAATTAAAAACATTACATAAGTC-TTGAAATTA
1 ACTACATAATTAAAAACATTACATAAATCTTTG-AA-TA
58530719 AC-ACATAATT
1 ACTACATAATT
58530729 GAAATGTAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
36 3 0.07
37 38 0.86
38 3 0.07
ACGTcount: A:0.49, C:0.15, G:0.04, T:0.32
Consensus pattern (37 bp):
ACTACATAATTAAAAACATTACATAAATCTTTGAATA
Found at i:58532988 original size:234 final size:234
Alignment explanation
Indices: 58532579--58533043 Score: 851
Period size: 234 Copynumber: 2.0 Consensus size: 234
58532569 TTCATCTAAA
58532579 TACAATTGATAAACATCCCTAGTCATAGTAGTTCGTGAAGGAATATGAAACCTAGGACATGCCAC
1 TACAATTGATAAACATCCCTAGTCATAGTAGTTCGTGAAGGAATATGAAACCTAGGACATGCCAC
*
58532644 AAACATAAATTTTTTAAAACCTTCACTTTCAACAAACTTGAAAGGTAATTCATCAATCACAATCA
66 AAACATAAATTTCTTAAAACCTTCACTTTCAACAAACTTGAAAGGTAATTCATCAATCACAATCA
*
58532709 TTTGTGCTAATTCTTTCCTACATGCTTCTCGATCAAATCTCCAAGTTGAAAGATTCCTTTCCCCC
131 TTTGTGCTAATTCTTTCCTACATGCTTCTCGATCAAATCTCCAAGTTGAAAGATTCCCTTCCCCC
*
58532774 CTTCAACTCCCTTTCTAGGTAAAACTAGTTGTCCTTTCC
196 CTTCAACTCCCTTTCTAGGTAAAACTAGTTGCCCTTTCC
* *
58532813 TACAATTGATAAATATTCCTAGTCATAGTAGTTCGTGAAGGAATATGAAACCTAGGACATGCCAC
1 TACAATTGATAAACATCCCTAGTCATAGTAGTTCGTGAAGGAATATGAAACCTAGGACATGCCAC
*
58532878 AAACATAAGTTTCTTAAAACCTTCACTTTCAACAAACTTGAAAGGTAATTCATCAATCACAATCA
66 AAACATAAATTTCTTAAAACCTTCACTTTCAACAAACTTGAAAGGTAATTCATCAATCACAATCA
*
58532943 TTTGTGCTAA-TCTTTTCCTACATGCTTCTTGATCAAATCTCCAAGTTGAAAGATTCCCTTCCCC
131 TTTGTGCTAATTC-TTTCCTACATGCTTCTCGATCAAATCTCCAAGTTGAAAGATTCCCTTCCCC
58533007 CCTTCAACTCCCTTTCTAGGTAAAACTAGTTGCCCTT
195 CCTTCAACTCCCTTTCTAGGTAAAACTAGTTGCCCTT
58533044 GACTAGTGTC
Statistics
Matches: 223, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
233 2 0.01
234 221 0.99
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.32
Consensus pattern (234 bp):
TACAATTGATAAACATCCCTAGTCATAGTAGTTCGTGAAGGAATATGAAACCTAGGACATGCCAC
AAACATAAATTTCTTAAAACCTTCACTTTCAACAAACTTGAAAGGTAATTCATCAATCACAATCA
TTTGTGCTAATTCTTTCCTACATGCTTCTCGATCAAATCTCCAAGTTGAAAGATTCCCTTCCCCC
CTTCAACTCCCTTTCTAGGTAAAACTAGTTGCCCTTTCC
Found at i:58535670 original size:43 final size:43
Alignment explanation
Indices: 58535564--58535745 Score: 163
Period size: 43 Copynumber: 4.3 Consensus size: 43
58535554 CACACCCCTA
* * * * * *
58535564 ACGCCAGTGTGGCCAGGCTGTGTGTCTCACATGGCTAAGAGGC
1 ACGCCCGTGTGGCCAGGCCGTGAGTCTCACAAGGCCAAGAGAC
** * **
58535607 AC-CCTATCTGGCCAGGCCGTGAGTCTCACAAATCCAAGAGAC
1 ACGCCCGTGTGGCCAGGCCGTGAGTCTCACAAGGCCAAGAGAC
*
58535649 ACGCCCGTGTGGCCAGGCCGTGCA-TCTCACATGGCCAAGAGAC
1 ACGCCCGTGTGGCCAGGCCGTG-AGTCTCACAAGGCCAAGAGAC
* * * * * *
58535692 ATGCCAGTGTGGCCAGGCTGAGTGTCTCACACGGCCAAGAGAC
1 ACGCCCGTGTGGCCAGGCCGTGAGTCTCACAAGGCCAAGAGAC
58535735 AC-CCCTGTGTG
1 ACGCCC-GTGTG
58535746 TCTTACACAG
Statistics
Matches: 111, Mismatches: 24, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
42 34 0.31
43 76 0.68
44 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.18
Consensus pattern (43 bp):
ACGCCCGTGTGGCCAGGCCGTGAGTCTCACAAGGCCAAGAGAC
Found at i:58535745 original size:86 final size:85
Alignment explanation
Indices: 58535564--58535745 Score: 197
Period size: 85 Copynumber: 2.1 Consensus size: 85
58535554 CACACCCCTA
* * ** * * *
58535564 ACGCCAGTGTGGCCAGGCTGTGTGTCTCACATGGCTAAGAGGCACCCTATCTGGCCAGGCCGTGA
1 ACGCCCGTGTGGCCAGGCCGTGCATCTCACATGGCCAAGAGACACCCTATCTGGCCAGGCCGAGA
*
58535629 GTCTCACAAATCCAAGAGAC
66 GTCTCACAAAGCCAAGAGAC
* * *
58535649 ACGCCCGTGTGGCCAGGCCGTGCATCTCACATGGCCAAGAGACATGCC-AGTGTGGCCAGGCTGA
1 ACGCCCGTGTGGCCAGGCCGTGCATCTCACATGGCCAAGAGACA-CCCTA-TCTGGCCAGGCCGA
* **
58535713 GTGTCTCACACGGCCAAGAGAC
64 GAGTCTCACAAAGCCAAGAGAC
58535735 AC-CCCTGTGTG
1 ACGCCC-GTGTG
58535746 TCTTACACAG
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
85 42 0.52
86 38 0.47
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.18
Consensus pattern (85 bp):
ACGCCCGTGTGGCCAGGCCGTGCATCTCACATGGCCAAGAGACACCCTATCTGGCCAGGCCGAGA
GTCTCACAAAGCCAAGAGAC
Found at i:58544601 original size:25 final size:25
Alignment explanation
Indices: 58544548--58544635 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
58544538 GTACATGTAT
* *
58544548 GCTCATACGAGC-G-ATAAATGATAA
1 GCTCATACGAGCTGAAT-AACGGTAA
58544572 GCTCAT-CTGAGCTGAATAACGGTAA
1 GCTCATAC-GAGCTGAATAACGGTAA
* **
58544597 GCTCATACGAGCTGAGTATTGGTAA
1 GCTCATACGAGCTGAATAACGGTAA
*
58544622 GCTCATAAGAGCTG
1 GCTCATACGAGCTG
58544636 GAATTGGTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
23 1 0.02
24 10 0.19
25 40 0.74
26 3 0.06
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (25 bp):
GCTCATACGAGCTGAATAACGGTAA
Found at i:58544932 original size:5 final size:5
Alignment explanation
Indices: 58544922--58544947 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
58544912 TTTAATCTTT
58544922 ATTCA ATTCA ATTCA ATTCA ATTCA A
1 ATTCA ATTCA ATTCA ATTCA ATTCA A
58544948 AAACCATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.38
Consensus pattern (5 bp):
ATTCA
Found at i:58546847 original size:29 final size:28
Alignment explanation
Indices: 58546814--58546886 Score: 83
Period size: 29 Copynumber: 2.6 Consensus size: 28
58546804 GACTATAGTA
* *
58546814 CTCACACAAGCTGACAGTGATTAGGGTTG
1 CTCACACAAGCTGACAGTGATGA-AGTTG
* * * *
58546843 CTCACACAAGTTGACATTTATGAATTTG
1 CTCACACAAGCTGACAGTGATGAAGTTG
58546871 CTCACACAAGCTGACA
1 CTCACACAAGCTGACA
58546887 TTTAGGAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 18 0.49
29 19 0.51
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (28 bp):
CTCACACAAGCTGACAGTGATGAAGTTG
Found at i:58546880 original size:28 final size:28
Alignment explanation
Indices: 58546840--58546923 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
58546830 GTGATTAGGG
*
58546840 TTGCTCACACAAGTTGACATTTATGAAT
1 TTGCTCACACAAGCTGACATTTATGAAT
*
58546868 TTGCTCACACAAGCTGACATTTAGGAAT
1 TTGCTCACACAAGCTGACATTTATGAAT
* * * *
58546896 TTTCTCACAAAAGCTAATATTTATGAAT
1 TTGCTCACACAAGCTGACATTTATGAAT
58546924 CAAGAATCCG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.35
Consensus pattern (28 bp):
TTGCTCACACAAGCTGACATTTATGAAT
Found at i:58551011 original size:31 final size:33
Alignment explanation
Indices: 58550975--58551039 Score: 91
Period size: 31 Copynumber: 2.0 Consensus size: 33
58550965 GTCATTGTAT
58550975 ACATAAAACTTGA-ATTGTGATTT-A-TATATAC
1 ACATAAAACTT-ATATTGTGATTTAATTATATAC
*
58551006 ACATAAAACTTATATTTTGATTTAATTATATAC
1 ACATAAAACTTATATTGTGATTTAATTATATAC
58551039 A
1 A
58551040 TTTAAAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 1 0.03
31 20 0.67
32 1 0.03
33 8 0.27
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.42
Consensus pattern (33 bp):
ACATAAAACTTATATTGTGATTTAATTATATAC
Found at i:58558377 original size:90 final size:91
Alignment explanation
Indices: 58558181--58558408 Score: 298
Period size: 90 Copynumber: 2.5 Consensus size: 91
58558171 GAAGATTCTG
*
58558181 GCGTGTTATCGGTTGGAAAACTCTTATGAGCAATCTAGCGTGTTATCAGGGGCGAATATTTAGCC
1 GCGTGTTATCGGTTGGAAAGCTCTTATGAGCAATCTAGCGTGTTATCAGGGGCGAATATTTAGCC
*
58558246 TATAAGCTTAGCACTATATGCATCTA
66 TACAAGCTTAGCACTATATGCATCTA
* * * *
58558272 GCATGTTATTGGTTGGAAAGCTCTTATGAGCAATCT-GACGTGTTGTC-GGGGGGAATATTTAGC
1 GCGTGTTATCGGTTGGAAAGCTCTTATGAGCAATCTAG-CGTGTTATCAGGGGCGAATATTTAGC
** * * * *
58558335 CTACGGGTTTAGCACTATGTGCATTTT
65 CTACAAGCTTAGCACTATATGCATCTA
* * *
58558362 GCGTGTTATCAGTTGGAAAGCTCTTATGAGCAATTTAGTGTGTTATC
1 GCGTGTTATCGGTTGGAAAGCTCTTATGAGCAATCTAGCGTGTTATC
58558409 GGATGGTCAC
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
90 75 0.64
91 42 0.36
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (91 bp):
GCGTGTTATCGGTTGGAAAGCTCTTATGAGCAATCTAGCGTGTTATCAGGGGCGAATATTTAGCC
TACAAGCTTAGCACTATATGCATCTA
Found at i:58565549 original size:40 final size:40
Alignment explanation
Indices: 58565466--58565688 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 40
58565456 TTGAATGCTG
* * * * *
58565466 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
58565506 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* **
58565546 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
58565586 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
58565626 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
58565665 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
58565689 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.21
40 114 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:58565603 original size:80 final size:79
Alignment explanation
Indices: 58565466--58565690 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 79
58565456 TTGAATGCTG
* * * * * *
58565466 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
58565529 TTGTGCGAGA-TACTAAA
63 TTGTGCGA-ATTACTAAA
* *
58565546 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTT
**
58565611 GTGCGAATTGTTAAA
65 GTGCGAATTACTAAA
* * * *
58565626 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTT-ACTAAATCCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATTT
58565690 G
65 G
58565691 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
79 37 0.30
80 81 0.65
81 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:58565708 original size:79 final size:80
Alignment explanation
Indices: 58565541--58565723 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
58565531 GTGCGAGATA
** *
58565541 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
58565606 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
58565621 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
58565685 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
58565700 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
58565724 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:58565708 original size:119 final size:120
Alignment explanation
Indices: 58565466--58565723 Score: 281
Period size: 119 Copynumber: 2.2 Consensus size: 120
58565456 TTGAATGCTG
* * * * *
58565466 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* ** ** *
58565531 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* * * *
58565586 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTATG-TCCCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCGAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCCA
* * * * *
58565648 TTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
64 TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
58565705 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
58565724 TACGTGATTT
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
118 15 0.13
119 51 0.44
120 39 0.34
121 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:58577473 original size:43 final size:43
Alignment explanation
Indices: 58577407--58577539 Score: 160
Period size: 43 Copynumber: 3.1 Consensus size: 43
58577397 AAATACATAT
* * *
58577407 CGAAGCAATTGTACTGGCACACACAGTGCATCATCTGACAAAC
1 CGAAACAATTATACTGGCACACACAGTGCATCATCGGACAAAC
* * **
58577450 CGAAACAATTATACTGGCACACACAATACATCATCGGACAGGC
1 CGAAACAATTATACTGGCACACACAGTGCATCATCGGACAAAC
* * *
58577493 C-AAAGCAATTATACTGGGACACACGGTGCATCATCGGATAAAC
1 CGAAA-CAATTATACTGGCACACACAGTGCATCATCGGACAAAC
58577536 CGAA
1 CGAA
58577540 GTATAACCTA
Statistics
Matches: 74, Mismatches: 14, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
42 3 0.04
43 69 0.93
44 2 0.03
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.17
Consensus pattern (43 bp):
CGAAACAATTATACTGGCACACACAGTGCATCATCGGACAAAC
Found at i:58586636 original size:6 final size:6
Alignment explanation
Indices: 58586627--58586661 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
58586617 AATGGAGAAT
*
58586627 ATATAC ATATAT ATATAC ATATAC ATATAC ATATA
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATA
58586662 TATACACGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (6 bp):
ATATAC
Found at i:58586638 original size:2 final size:2
Alignment explanation
Indices: 58586625--58586699 Score: 51
Period size: 2 Copynumber: 37.0 Consensus size: 2
58586615 GAAATGGAGA
* * * * *
58586625 AT AT AT AC AT AT AT AT AT AC AT AT AC AT AT AC AT AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
58586667 AC GT AA AT GAT AT AT AT AT GT AT GT AT AT AT AT
1 AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT
58586700 CCATGGTTGG
Statistics
Matches: 54, Mismatches: 18, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
2 52 0.96
3 2 0.04
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (2 bp):
AT
Found at i:58586642 original size:12 final size:12
Alignment explanation
Indices: 58586625--58586665 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
58586615 GAAATGGAGA
58586625 ATATATACATAT
1 ATATATACATAT
58586637 ATATATACATAT
1 ATATATACATAT
*
58586649 ACATATACATAT
1 ATATATACATAT
58586661 ATATA
1 ATATA
58586666 CACGTAAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (12 bp):
ATATATACATAT
Found at i:58586850 original size:10 final size:10
Alignment explanation
Indices: 58586825--58586858 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
58586815 GAAGATACCT
58586825 TATAATATGTA
1 TATAATAT-TA
*
58586836 TATAATATAA
1 TATAATATTA
58586846 TATAATATTA
1 TATAATATTA
58586856 TAT
1 TAT
58586859 GTATATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 13 0.62
11 8 0.38
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (10 bp):
TATAATATTA
Found at i:58591219 original size:199 final size:202
Alignment explanation
Indices: 58590764--58591223 Score: 628
Period size: 199 Copynumber: 2.3 Consensus size: 202
58590754 ATGCATACCC
* * *
58590764 GTGTGATAGGATTTTTAGTATTGATAATGTATTTGATTGAGTTGATGTCAAAAGTTAAACTATTT
1 GTGTGATAGGATTTTTAGTATTAATAATGTATTTGATTGAGTTGGTGTCACAAGTTAAACTATTT
58590829 TTCATTTTAATTTCATGCATATTGCACATGTGGTGCTGTTATTATTATTACCAGTTTCAAACCTT
66 TTCATTTTAATTT-ATGCATATTGCACATGTGGT-CTGTTATTATTATT--CAGTTTCAAACCTT
* * *
58590894 ACGTCTCATTATTTATTTTATGTTATTTTTAAACATACATTTTTATTCAAAATTTATGGCTTCAA
127 ACGTCTCATTATTTATTATATGTTATTTTTAAACACACATTTTTATTCAAAATTTATAGCTTCAA
**
58590959 CACGAATAGGT
192 CACGAATACAT
58590970 GTGTGATAGGATTTTTAGTATTAATAATGTATTTGATTGAGTTGGTGTCACAAGTTAAACTATTT
1 GTGTGATAGGATTTTTAGTATTAATAATGTATTTGATTGAGTTGGTGTCACAAGTTAAACTATTT
*
58591035 TTCATTTTAATTT-TGCACGTATTGCATATGT-GT-TGTTATTATTATT-AGTTTCAAACCTTAC
66 TTCATTTTAATTTATGCA--TATTGCACATGTGGTCTGTTATTATTATTCAGTTTCAAACCTTAC
* * * * *
58591096 GTTTCATTATTTATTATATGTTA-TTTTAAACACATATTTTTATTCAAAATTTGTAGTTTCCACA
129 GTCTCATTATTTATTATATGTTATTTTTAAACACACATTTTTATTCAAAATTTATAGCTTCAACA
58591160 C-ACATACAT
194 CGA-ATACAT
* ** * *
58591169 GTGTGATAGAATTCCTAGTATTAATTATGT-TGTTAATTGAGTTGGTGTCACAAGT
1 GTGTGATAGGATTTTTAGTATTAATAATGTAT-TTGATTGAGTTGGTGTCACAAGT
58591224 CAACTCGACA
Statistics
Matches: 231, Mismatches: 19, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
198 2 0.01
199 88 0.38
200 36 0.16
203 13 0.06
204 4 0.02
205 2 0.01
206 86 0.37
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.46
Consensus pattern (202 bp):
GTGTGATAGGATTTTTAGTATTAATAATGTATTTGATTGAGTTGGTGTCACAAGTTAAACTATTT
TTCATTTTAATTTATGCATATTGCACATGTGGTCTGTTATTATTATTCAGTTTCAAACCTTACGT
CTCATTATTTATTATATGTTATTTTTAAACACACATTTTTATTCAAAATTTATAGCTTCAACACG
AATACAT
Found at i:58611337 original size:49 final size:49
Alignment explanation
Indices: 58611279--58611378 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
58611269 ACATAACTCA
*
58611279 TAAAATAAAACATATTTAGCAAATGGTAATAATAAGAGTAACATAGTAT
1 TAAAATAAAACATATTTAGCAAATGGTAATAACAAGAGTAACATAGTAT
58611328 TAAAATAAAACATATTTAGCAAATGGTAATAACAAGAGTAACATAGTAT
1 TAAAATAAAACATATTTAGCAAATGGTAATAACAAGAGTAACATAGTAT
58611377 TA
1 TA
58611379 GTAAAAGAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.53, C:0.07, G:0.12, T:0.28
Consensus pattern (49 bp):
TAAAATAAAACATATTTAGCAAATGGTAATAACAAGAGTAACATAGTAT
Found at i:58612794 original size:16 final size:17
Alignment explanation
Indices: 58612772--58612809 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
58612762 AACTAAATAG
*
58612772 CTAAAATAAATAAACAA
1 CTAAAATAAACAAACAA
58612789 -TAAAATAAACAAACAA
1 CTAAAATAAACAAACAA
58612805 CTAAA
1 CTAAA
58612810 CAAATTAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.71, C:0.13, G:0.00, T:0.16
Consensus pattern (17 bp):
CTAAAATAAACAAACAA
Found at i:58616029 original size:24 final size:24
Alignment explanation
Indices: 58616002--58616047 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
58615992 ATGACTATAT
58616002 ATAAAATT-TTAATAAATAAAATAG
1 ATAAAATTATTAA-AAATAAAATAG
*
58616026 ATAAAATTATTAAATATAAAAT
1 ATAAAATTATTAAAAATAAAAT
58616048 TAAAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (24 bp):
ATAAAATTATTAAAAATAAAATAG
Found at i:58617370 original size:30 final size:30
Alignment explanation
Indices: 58617331--58617391 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
58617321 GGGGGTGGGA
*
58617331 TGGGAAGGGAGTAAAAGTTTTGAGGGGAAAG
1 TGGGAAGGGAGTAAAAGTATTG-GGGGAAAG
58617362 TGGG-AGGGAGTAAAAGTATTGGGGGAAAG
1 TGGGAAGGGAGTAAAAGTATTGGGGGAAAG
58617391 T
1 T
58617392 AAAAAGGTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 9 0.31
30 16 0.55
31 4 0.14
ACGTcount: A:0.34, C:0.00, G:0.46, T:0.20
Consensus pattern (30 bp):
TGGGAAGGGAGTAAAAGTATTGGGGGAAAG
Found at i:58617769 original size:20 final size:20
Alignment explanation
Indices: 58617733--58617770 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
58617723 TACATTTATT
*
58617733 TTTTATTTAATTTTTAATTA
1 TTTTATTTAATTATTAATTA
58617753 TTTTATTTTAA-TATTAAT
1 TTTTA-TTTAATTATTAAT
58617771 AAAATTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTATTTAATTATTAATTA
Found at i:58618361 original size:26 final size:28
Alignment explanation
Indices: 58618309--58618363 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 28
58618299 TTATTTAAAT
*
58618309 TTTTAATATAATTAAAATATGTTAATAA
1 TTTTAATATAATTAAAATATGTCAATAA
58618337 TTTTAA-A-AATTAAAATAT-TACAATAA
1 TTTTAATATAATTAAAATATGT-CAATAA
58618363 T
1 T
58618364 AAAAAACTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 1 0.04
26 17 0.68
27 1 0.04
28 6 0.24
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (28 bp):
TTTTAATATAATTAAAATATGTCAATAA
Found at i:58621450 original size:15 final size:15
Alignment explanation
Indices: 58621427--58621461 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
58621417 TTATGTTAAA
*
58621427 TTTTGATTTGATAAT
1 TTTTAATTTGATAAT
58621442 TTTTAATTTGATAAT
1 TTTTAATTTGATAAT
*
58621457 CTTTA
1 TTTTA
58621462 CAGAGTTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.03, G:0.09, T:0.60
Consensus pattern (15 bp):
TTTTAATTTGATAAT
Found at i:58622847 original size:25 final size:25
Alignment explanation
Indices: 58622807--58622865 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
58622797 TAGCTATTTG
* * * *
58622807 AGGCATGTATGCTTAATTCTAGTGA
1 AGGCATGAATGCTTAATGCTAATCA
*
58622832 AGGCATGAATGGTTAATGCTAATCA
1 AGGCATGAATGCTTAATGCTAATCA
58622857 A-GCATGAAT
1 AGGCATGAAT
58622866 TGGTAAGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 8 0.28
25 21 0.72
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.31
Consensus pattern (25 bp):
AGGCATGAATGCTTAATGCTAATCA
Found at i:58627780 original size:20 final size:20
Alignment explanation
Indices: 58627755--58627792 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
58627745 AATGTTCTTT
58627755 CATTCTTTACGATTTTTTTC
1 CATTCTTTACGATTTTTTTC
**
58627775 CATTCTTTTGGATTTTTT
1 CATTCTTTACGATTTTTT
58627793 CTGCCAAACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.08, T:0.63
Consensus pattern (20 bp):
CATTCTTTACGATTTTTTTC
Found at i:58628726 original size:22 final size:22
Alignment explanation
Indices: 58628701--58628747 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
58628691 AGGAAGTGAT
*
58628701 ATGAAAAAAT-AAAAAGATGAAA
1 ATGAAAAAATGAAAAAG-TAAAA
58628723 ATGAAAAAATGAAAAAGTAAAA
1 ATGAAAAAATGAAAAAGTAAAA
58628745 ATG
1 ATG
58628748 GAGAGGCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 17 0.74
23 6 0.26
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (22 bp):
ATGAAAAAATGAAAAAGTAAAA
Found at i:58630271 original size:132 final size:132
Alignment explanation
Indices: 58630093--58630999 Score: 1349
Period size: 132 Copynumber: 6.9 Consensus size: 132
58630083 CATAGACAGC
*
58630093 GGAGCAGATCAAAGATGG-TGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGT
1 GGAGCAGATCAAAGATGGCAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGT
* * * * * *
58630157 AATTC-AATCTCCCTGGGCAGCAGTGGAATAGATTGAGGATTTCAGATCTTATCTCCCTAAGTAG
65 AATTCTACT-TCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAG
58630221 TAGT
129 TAGT
* * * * *
58630225 GGAGAAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTAAAGCCAGTA
1 GGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTA
* * * * *
58630290 ATTCTA-TCTCCCTGGGCAGCAGTGGAATAGACTGAAGATTTTAGATCTTGTCTTCCT--GCA-T
66 ATTCTACT-TCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGT
58630351 AGAT
130 AG-T
* *
58630355 AGAGAAGCAGATCGAAGACGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 -G-G-AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * * **
58630420 GTAATTCTACTTCTCTAGATAGCAGTAGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
63 GTAATTCTACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
58630485 GTAGT
128 GTAGT
* *
58630490 GGAGCAGATCAAAGATGGCAGATATTACCTCCCTGTAGTTACAGTGGAGTACATTGAAGCCAGTA
1 GGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTA
* * *
58630555 ATTCTACTTCCTTGGACAGCAGCGGAATAGATTGAAGATTTCAGATATTGTTTCCCTAAGCAGTA
66 ATTCTACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTA
*
58630620 GC
131 GT
* * * *
58630622 GGAGTAGATCAAATATGGCAGATTTTACGTCCCTGTGGTTACAATGGAGTACATTGAAGCCAGTA
1 GGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTA
* * *
58630687 ATTCTACTTCCCTGGACAGCAACGGAATAGATTGAGGATTTCAAATCTTGTCTCCCTAAGCAGTA
66 ATTCTACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTA
58630752 GT
131 GT
*
58630754 GGAGCAGATCAAAGATGGCAGATTTTACCTTCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTA
1 GGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTA
*
58630819 ATTCTACTTCCTTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTA
66 ATTCTACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTA
58630884 GT
131 GT
58630886 GGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTA
1 GGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTA
*
58630951 ATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTT
66 ATTCTACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTT
58631000 ACCTCCTTAG
Statistics
Matches: 702, Mismatches: 63, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
129 3 0.00
130 3 0.00
131 1 0.00
132 578 0.82
133 108 0.15
134 2 0.00
135 4 0.01
136 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
GGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTA
ATTCTACTTCCCTGGACAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTA
GT
Found at i:58631081 original size:50 final size:50
Alignment explanation
Indices: 58631024--58631485 Score: 320
Period size: 50 Copynumber: 9.2 Consensus size: 50
58631014 GCAGTGGAAC
* * * *
58631024 AGATTGAAGCTACGATGGCAGATCTGGTTTCCCTGATATTGTAATTAAAA
1 AGATTGAAGCTACAACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
* *** * * * * * ** *
58631074 AGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCT-GTGTAGTGGAAT
1 AGATTGAAGCTACAACGGCGGATCTGGTTTCCCT-GATATTGCAATTAAAA
*
58631124 AGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
* *** * * * * ** *
58631174 AGATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGCAGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGGATCTGGTTTCCCTGA-TATTGCAATTAAAA
*
58631224 AGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
* *** * * * * ** *
58631274 AGATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGCAGTGCAGTGGAAC
1 AGATTGAAGCTACAACGGCGGATCTGGTTTCCCTGA-TATTGCAATTAAAA
*
58631324 AGATTGAAGCTACAACGGCGGATCTGGTTTCTCTGATATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
* * * *** *** ** ** *
58631374 AGATTGAAGCCACAACGACAGATCTTACTTCCCTGACGGTGCGGTGGAAC
1 AGATTGAAGCTACAACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
* * * * *
58631424 AGATTGAAGCTACGACGGCGGATCTGGTTTCCCCGACATTGCAGTTGAACA
1 AGATTGAAGCTACAACGGCGGATCTGGTTTCCCTGATATTGCAATT-AAAA
58631475 A-ATTGAAGCTA
1 AGATTGAAGCTA
58631486 TAAGTCTTAT
Statistics
Matches: 300, Mismatches: 105, Indels: 14
0.72 0.25 0.03
Matches are distributed among these distances:
49 10 0.03
50 279 0.93
51 11 0.04
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAA
Found at i:58631170 original size:100 final size:100
Alignment explanation
Indices: 58630994--58631483 Score: 786
Period size: 100 Copynumber: 4.9 Consensus size: 100
58630984 GAAGATTTCA
* * *
58630994 GATCTTACCTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGATGGCAGATCTGGTTTCCCTG
1 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
*
58631059 ATATTGTAATTAAAAAGATTGAAGCCACAACGGCG
66 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
* * *
58631094 GATCTTACTTCCTTAGCTGTGTAGTGGAATAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
1 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
58631159 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
66 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
58631194 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
1 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
58631259 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
66 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
* *
58631294 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACAACGGCGGATCTGGTTTCTCTG
1 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
* *
58631359 ATATTGCAATTAAAAAGATTGAAGCCACAACGACA
66 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
* * * *
58631394 GATCTTACTTCCCT-GACGGTGCGGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCC
1 GATCTTACTTCCTTAG-CAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCT
* * *
58631458 GACATTGCAGTTGAACAA-ATTGAAGC
65 GATATTGCAATT-AAAAAGATTGAAGC
58631484 TATAAGTCTT
Statistics
Matches: 365, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
99 1 0.00
100 360 0.99
101 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (100 bp):
GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
Found at i:58648648 original size:43 final size:43
Alignment explanation
Indices: 58648586--58648724 Score: 156
Period size: 43 Copynumber: 3.5 Consensus size: 43
58648576 AGTGATTCGG
58648586 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAGGATATGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAGGATATGGT
* * *
58648629 AGAATCAGCACTTAGCAA---C---CAC---CAAAGAGT-CGG-
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAGGA-TATGGT
58648662 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAGGATATGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAGGATATGGT
*
58648705 GGAATTAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
58648725 ACCAAAGAGT
Statistics
Matches: 77, Mismatches: 7, Indels: 24
0.71 0.06 0.22
Matches are distributed among these distances:
33 17 0.22
34 7 0.09
35 1 0.01
36 1 0.01
37 3 0.04
39 3 0.04
40 1 0.01
41 1 0.01
42 7 0.09
43 36 0.47
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (43 bp):
GGAATCAGCACTTAGCAACCCCTTTCACATTCAAGGATATGGT
Found at i:58648662 original size:76 final size:76
Alignment explanation
Indices: 58648470--58648761 Score: 449
Period size: 76 Copynumber: 3.8 Consensus size: 76
58648460 AACCGTTATC
* ** *
58648470 GGTGGATTCAGCACTTAGCAACCACCAGTGATTCGGGGAATCAGCACTTAGCAACCCCCTTTTTT
1 GGTGGAATCAGCACTTAGCAACCACCAAAGAGTCGGGGAATCAGCACTTAGCAA-CCCC---TTT
*
58648535 TACATTCAAGGATAT
62 CACATTCAAGGATAT
** *
58648550 GGTGGAATCAGCACTTAGCAACCACCAGTGATTCGGGGAATCAGCACTTAGCAACCCCTTTCACA
1 GGTGGAATCAGCACTTAGCAACCACCAAAGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACA
58648615 TTCAAGGATAT
66 TTCAAGGATAT
*
58648626 GGTAGAATCAGCACTTAGCAACCACCAAAGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACA
1 GGTGGAATCAGCACTTAGCAACCACCAAAGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACA
58648691 TTCAAGGATAT
66 TTCAAGGATAT
* *
58648702 GGTGGAATTAGCACTTAGCAACCACCAAAGAGTCAGGGAATCAGCACTTAGCAACCCCTT
1 GGTGGAATCAGCACTTAGCAACCACCAAAGAGTCGGGGAATCAGCACTTAGCAACCCCTT
58648762 GAGGGAATCA
Statistics
Matches: 203, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
76 146 0.72
79 4 0.02
80 53 0.26
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (76 bp):
GGTGGAATCAGCACTTAGCAACCACCAAAGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACA
TTCAAGGATAT
Found at i:58648672 original size:33 final size:33
Alignment explanation
Indices: 58648630--58648757 Score: 114
Period size: 33 Copynumber: 3.6 Consensus size: 33
58648620 GGATATGGTA
58648630 GAATCAGCACTTAGCAACCACCAAAGAGTCGGG
1 GAATCAGCACTTAGCAACCACCAAAGAGTCGGG
* *
58648663 GAATCAGCACTTAGCAACCCCTTTCACATTCA-AGGATATGGTG
1 GAATCAGCACTTAGCAACCAC---CA-A---AGA-G-T-CGG-G
* *
58648706 GAATTAGCACTTAGCAACCACCAAAGAGTCAGG
1 GAATCAGCACTTAGCAACCACCAAAGAGTCGGG
58648739 GAATCAGCACTTAGCAACC
1 GAATCAGCACTTAGCAACC
58648758 CCTTGAGGGA
Statistics
Matches: 76, Mismatches: 7, Indels: 24
0.71 0.07 0.22
Matches are distributed among these distances:
33 39 0.51
34 1 0.01
35 1 0.01
36 4 0.05
37 2 0.03
39 2 0.03
40 4 0.05
41 1 0.01
42 2 0.03
43 20 0.26
ACGTcount: A:0.35, C:0.27, G:0.20, T:0.18
Consensus pattern (33 bp):
GAATCAGCACTTAGCAACCACCAAAGAGTCGGG
Found at i:58648766 original size:27 final size:28
Alignment explanation
Indices: 58648736--58648790 Score: 103
Period size: 27 Copynumber: 2.0 Consensus size: 28
58648726 CCAAAGAGTC
58648736 AGGGAATCAGCACTTAGCAAC-CCCTTG
1 AGGGAATCAGCACTTAGCAACTCCCTTG
58648763 AGGGAATCAGCACTTAGCAACTCCCTTG
1 AGGGAATCAGCACTTAGCAACTCCCTTG
58648791 TTATTCAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (28 bp):
AGGGAATCAGCACTTAGCAACTCCCTTG
Found at i:58655062 original size:23 final size:22
Alignment explanation
Indices: 58655019--58655062 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
58655009 TTCTAAGTGA
58655019 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
58655042 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
58655063 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:58655231 original size:26 final size:25
Alignment explanation
Indices: 58655202--58655282 Score: 60
Period size: 26 Copynumber: 3.2 Consensus size: 25
58655192 ATGTTCGGTT
58655202 CACATAGTAGCCTGCACATAGTACTA
1 CACATAGTAGCCT-CACATAGTACTA
* * *
58655228 CACAT-GTGGCCATTACCATCCG-A-TA
1 CACATAGTAGCC-TCA-CAT-AGTACTA
*
58655253 CACGTAGTAGCCTACACATAGTACTA
1 CACATAGTAGCCT-CACATAGTACTA
58655279 CACA
1 CACA
58655283 CGTGATCGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
24 1 0.03
25 17 0.43
26 21 0.52
27 1 0.03
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.22
Consensus pattern (25 bp):
CACATAGTAGCCTCACATAGTACTA
Found at i:58655264 original size:51 final size:50
Alignment explanation
Indices: 58655197--58655392 Score: 232
Period size: 51 Copynumber: 3.9 Consensus size: 50
58655187 CAATGATGTT
* * * *
58655197 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGGCCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATC
* * * * *
58655248 CGATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* * * * *
58655299 CGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TC
58655349 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
58655393 CACTTTCACT
Statistics
Matches: 119, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
49 2 0.02
50 41 0.34
51 74 0.62
52 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCATC
Found at i:58655382 original size:101 final size:101
Alignment explanation
Indices: 58655204--58655388 Score: 300
Period size: 101 Copynumber: 1.8 Consensus size: 101
58655194 GTTCGGTTCA
* *
58655204 CATAGTAGCCTGCACATAGTACTACACATGTGGCCATTACCATCCGATACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTACA
58655269 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
* * *
58655306 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTACA
58655370 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
58655389 CCATCACTTT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
100 4 0.05
101 40 0.52
102 33 0.43
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAACTATCCGGTACG
Found at i:58657611 original size:18 final size:19
Alignment explanation
Indices: 58657584--58657619 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
58657574 CAATATAGGG
58657584 TCATTAATTTC-ACTTAAA
1 TCATTAATTTCAACTTAAA
*
58657602 TCATTCATTTCAACTTAA
1 TCATTAATTTCAACTTAA
58657620 GCAAAGAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.36, C:0.19, G:0.00, T:0.44
Consensus pattern (19 bp):
TCATTAATTTCAACTTAAA
Found at i:58660508 original size:14 final size:14
Alignment explanation
Indices: 58660491--58660543 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
58660481 TTCAATGTTT
*
58660491 ATATTGCAATGATC
1 ATATTGCAACGATC
*
58660505 ATATTCCAACGATC
1 ATATTGCAACGATC
*
58660519 ATATTGTAAC-AGTC
1 ATATTGCAACGA-TC
*
58660533 ATATTCCAACG
1 ATATTGCAACG
58660544 GCCATATTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 1 0.03
14 30 0.97
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (14 bp):
ATATTGCAACGATC
Found at i:58660549 original size:14 final size:14
Alignment explanation
Indices: 58660503--58660551 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
58660493 ATTGCAATGA
*
58660503 TCATATTCCAACGA
1 TCATATTCCAACGG
** *
58660517 TCATATTGTAACAG
1 TCATATTCCAACGG
58660531 TCATATTCCAACGG
1 TCATATTCCAACGG
*
58660545 CCATATT
1 TCATATT
58660552 TTTGCATTAC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (14 bp):
TCATATTCCAACGG
Found at i:58671872 original size:44 final size:44
Alignment explanation
Indices: 58671751--58671872 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 44
58671741 TGTCATTAGG
*
58671751 ATTTATATTCAA-AAGGTACTATGT-CCAGGTGTTGGCTACTTGCC
1 ATTTATATTCAACAA-GTACTATGTACC-GATGTTGGCTACTTGCC
* *
58671795 ATTTATATTCAGCAAGTACTATGTACC-AGTGTTGGCTA-TGTTCC
1 ATTTATATTCAACAAGTACTATGTACCGA-TGTTGGCTACT-TGCC
*
58671839 ATTTATATTCAACAAGTATTATGTACCGATGTTG
1 ATTTATATTCAACAAGTACTATGTACCGATGTTG
58671873 TAGTAGCAGA
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
43 1 0.01
44 62 0.91
45 5 0.07
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (44 bp):
ATTTATATTCAACAAGTACTATGTACCGATGTTGGCTACTTGCC
Found at i:58679779 original size:21 final size:22
Alignment explanation
Indices: 58679739--58679780 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
58679729 ATCACCTTTC
*
58679739 GAATTTTTGATCTTTTTTTCTCT
1 GAATTTTT-ATCTGTTTTTCTCT
58679762 GAATTTTT-TCTGTTTTTCT
1 GAATTTTTATCTGTTTTTCT
58679781 ATTCAGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
23 8 0.44
ACGTcount: A:0.12, C:0.12, G:0.10, T:0.67
Consensus pattern (22 bp):
GAATTTTTATCTGTTTTTCTCT
Found at i:58686188 original size:175 final size:175
Alignment explanation
Indices: 58685784--58687130 Score: 2268
Period size: 175 Copynumber: 7.7 Consensus size: 175
58685774 AGATCTGAAA
* * *
58685784 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
1 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
*
58685849 CAGGGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
66 CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
* * * * *
58685914 TCTT-GGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCCGATG
131 TCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTG
* * *
58685958 CGATCTACTCTGTTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATACGCTCCACTGTAATCG
1 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
* *
58686023 CAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAAT
66 CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
* *
58686088 TCTTC-AGTCTGTTCCACTGTAATCTCAAGGAAATAAGACCTGATG
131 TCTTCGA-TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTG
* *
58686133 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCG
1 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
*
58686198 CAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
66 CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
* * *
58686263 TCTTTGATTTGTTCCGCTGTAATCTCAGGGAAATAAGACCTGGTG
131 TCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTG
*
58686308 CGATATACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
1 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
* * *
58686373 CAGGGGGATAGGATTACTAGCTTCAATATGCTCCGCTATAATCTCAGGGAGATAAGATCTGAAAT
66 CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
*
58686438 TCTTCGATCTGTTCCACTGTAATCTCAGGAAAATAAGACCTGGTG
131 TCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTG
* *
58686483 CGATCTACTCTGCTATAACTTCAGAGAGATAAGATCCTTTATTTTAATACGCTCCACTGTAATCT
1 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
* *
58686548 CAGGGAAAT-GGAATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGATCTGAAA
66 CAGGGAGATAGG-ATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAA
* *
58686612 TTCTTCGATCTGTTCCACTGTAATCTTAGGGAAAAAAGACCTGGTG
130 TTCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTG
58686658 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
1 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
58686723 CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
66 CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
* *
58686788 TCTTTGATCTGTTCCGCTGTAATCTCAGGGAAATAAGACCTGGTG
131 TCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTG
* *
58686833 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCTACTGTAATCT
1 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
* *
58686898 TAGGGAGATAGGATTACTTGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
66 CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
58686963 TCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTG
131 TCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTG
* *
58687008 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCATTGTAATCT
1 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
* *
58687073 CAGGGAGATAGGATTACTAGCTTCAATCTACTCCACTGTAATCTCAGGGAGATAAGAT
66 CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
58687131 TTCTAGCTTC
Statistics
Matches: 1101, Mismatches: 67, Indels: 9
0.94 0.06 0.01
Matches are distributed among these distances:
174 127 0.12
175 971 0.88
176 3 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (175 bp):
CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
TCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTG
Found at i:58686804 original size:46 final size:45
Alignment explanation
Indices: 58685840--58687224 Score: 527
Period size: 44 Copynumber: 31.6 Consensus size: 45
58685830 ATCCGTTCCA
* * * * *
58685840 CTGTAATCTCAGGGAGATAGGAT-T-ACTAGCTTCAATCTACTCCG
1 CTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTCGATCTGCTCCG
* *
58685884 CTGTAATCTCAGGGAGATAAGATCTGAAATTCTT-GGTCTGCTCCA
1 CTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCGATCTGCTCCG
* * * * *
58685929 CTGTAATCTCAGGGAGATAAGACCCG-A---TGCGATCTACTCTG
1 CTGTAATCTCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCG
* * ** * *
58685970 TTGTAA-CTTCAGAGAGATAAGATCCTTTATT-TT-AATAC-GCTCCA
1 CTGTAATC-TCAGGGAGATAAGAT-CTGAATTCTTCGAT-CTGCTCCG
* * * *
58686014 CTGTAATCGCAGGGAGATAGGAT-T-ACTATCTTCAATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTCGATCTGCTCCG
* * *
58686058 CTGTAATCTCAGGGAGATAAGATCTAAAATTCTTC-AGTCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCT-GAATTCTTCGA-TCTGCTCCG
* * * * * **
58686104 CTGTAATCTCAAGGAAATAAGACCTG-A---TGCGATCTACTCTA
1 CTGTAATCTCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCG
* ** * * *
58686145 CTGTAA-CTTCAGAGAGATAAGATCCTTTATT-TT-AATCCGCTCCA
1 CTGTAATC-TCAGGGAGATAAGAT-CTGAATTCTTCGATCTGCTCCG
* * * *
58686189 CTGTAATCGCAGGGAGATAGGAT-T-ACTATCTTCAATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTCGATCTGCTCCG
* * *
58686233 CTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGATTTGTTCCG
1 CTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCGATCTGCTCCG
* * * * * * *
58686279 CTGTAATCTCAGGGAAATAAGACCTG----GTGCGATATACTCTG
1 CTGTAATCTCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCG
* ** * * *
58686320 CTGTAA-CTTCAGAGAGATAAGATCCTTTATT-TT-AATCCGCTCCA
1 CTGTAATC-TCAGGGAGATAAGAT-CTGAATTCTTCGATCTGCTCCG
* * * * * *
58686364 CTGTAATCTCAGGGGGATAGGAT-T-ACTAGCTTCAATATGCTCCG
1 CTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTCGATCTGCTCCG
* * *
58686408 CTATAATCTCAGGGAGATAAGATCTGAAATTCTTCGATCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCGATCTGCTCCG
* * * * * * *
58686454 CTGTAATCTCAGGAAAATAAGACCTG----GTGCGATCTACTCTG
1 CTGTAATCTCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCG
* * ** * *
58686495 CTATAA-CTTCAGAGAGATAAGATCCTTTATT-TT-AATAC-GCTCCA
1 CTGTAATC-TCAGGGAGATAAGAT-CTGAATTCTTCGAT-CTGCTCCG
* * * * *
58686539 CTGTAATCTCAGGGAAAT-GGAAT-T-ACTAGCTTCAATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAG-ATCTGAAT-TCTTCGATCTGCTCCG
* * *
58686583 CTGTAATCTCAGAGAGATAAGATCTGAAATTCTTCGATCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCGATCTGCTCCG
* * * * * * * *
58686629 CTGTAATCTTAGGGAAAAAAGACCTG----GTGCGATCTACTCTG
1 CTGTAATCTCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCG
* ** * * *
58686670 CTGTAA-CTTCAGAGAGATAAGATCCTTTATT-TT-AATCCGCTCCA
1 CTGTAATC-TCAGGGAGATAAGAT-CTGAATTCTTCGATCTGCTCCG
* * * *
58686714 CTGTAATCTCAGGGAGATAGGAT-T-ACTAGCTTCAATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTCGATCTGCTCCG
* *
58686758 CTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGATCTGTTCCG
1 CTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCGATCTGCTCCG
* * * * * *
58686804 CTGTAATCTCAGGGAAATAAGACCTG----GTGCGATCTACTCTG
1 CTGTAATCTCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCG
* ** * **
58686845 CTGTAA-CTTCAGAGAGATAAGATCCTTTATT-TT-AATCTGCTCTA
1 CTGTAATC-TCAGGGAGATAAGAT-CTGAATTCTTCGATCTGCTCCG
* * * *
58686889 CTGTAATCTTAGGGAGATAGGAT-T-ACTTGCTTCAATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATCTGAATT-CTTCGATCTGCTCCG
* *
58686933 CTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGATCTGTTCCA
1 CTGTAATCTCAGGGAGATAAGATCTG-AATTCTTCGATCTGCTCCG
* * * * * *
58686979 CTGTAATCTCAGGGAAATAAGACCTG----GTGCGATCTACTCTG
1 CTGTAATCTCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCG
* ** * * * *
58687020 CTGTAA-CTTCAGAGAGATAAGATCCTTTATT-TT-AATCCGTTCCA
1 CTGTAATC-TCAGGGAGATAAGAT-CTGAATTCTTCGATCTGCTCCG
* * * * * * *
58687064 TTGTAATCTCAGGGAGATAGGAT-T-ACTAGCTTCAATCTACTCCA
1 CTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTCGATCTGCTCCG
* ** * * * *
58687108 CTGTAATCTCAGGGAGATAAGATTTCTA-GCTTCAATCTACTCCA
1 CTGTAATCTCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCG
* * * * *
58687152 CTGTAACCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCA
1 CTGTAATCTCAGGGAGATAAGATCT-GAATTCTTCGATCTGCTCCG
* *
58687198 CTGTAACCTCAGGGAGATAAGACCTGA
1 CTGTAATCTCAGGGAGATAAGATCTGA
58687225 TGCGATCTAC
Statistics
Matches: 990, Mismatches: 249, Indels: 203
0.69 0.17 0.14
Matches are distributed among these distances:
40 8 0.01
41 188 0.19
42 23 0.02
43 20 0.02
44 429 0.43
45 59 0.06
46 248 0.25
47 15 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (45 bp):
CTGTAATCTCAGGGAGATAAGATCTGAATTCTTCGATCTGCTCCG
Found at i:58687416 original size:87 final size:87
Alignment explanation
Indices: 58687268--58687560 Score: 406
Period size: 87 Copynumber: 3.4 Consensus size: 87
58687258 ATATCCTTTA
* * * * * * *
58687268 TTCAATCAGCTTCACTGCAACCGATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAACA
1 TTCAACCAGCTCCACTACAACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACG
* * * *
58687333 CCGAAAGGCAAGTTCTGCTATC
66 CAGGAAGGCCAGATCTGCTATC
* * *
58687355 TTCAATCAGCTCCACTACAACCGATGGAGACAAGGCTTTATTTTCAATCTGCTTCGCTGTTAACG
1 TTCAACCAGCTCCACTACAACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACG
*
58687420 CAGGAAGGCCAGATCTGCTATA
66 CAGGAAGGCCAGATCTGCTATC
* *
58687442 TTCAACCAGTTCCACTACAACCGATGGAGACAAGGCTTTGTTTTCAATCTACTTCGTTGTTAACG
1 TTCAACCAGCTCCACTACAACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACG
58687507 CAGGAAGGCCAGATCTGCTATC
66 CAGGAAGGCCAGATCTGCTATC
* **
58687529 TTCAACCAGTTCCACCGCAACCGATGGAGACA
1 TTCAACCAGCTCCACTACAACCGATGGAGACA
58687561 TAGCTTGTAT
Statistics
Matches: 185, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 185 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (87 bp):
TTCAACCAGCTCCACTACAACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACG
CAGGAAGGCCAGATCTGCTATC
Found at i:58688728 original size:21 final size:21
Alignment explanation
Indices: 58688702--58688748 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
58688692 GGTATAGCAA
58688702 GATCACCGTATGCCCCAATCT
1 GATCACCGTATGCCCCAATCT
** *
58688723 GATCACTTTATGCCCCATTCT
1 GATCACCGTATGCCCCAATCT
58688744 GATCA
1 GATCA
58688749 ATATTTGAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.34, G:0.13, T:0.30
Consensus pattern (21 bp):
GATCACCGTATGCCCCAATCT
Found at i:58688857 original size:7 final size:7
Alignment explanation
Indices: 58688847--58688872 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
58688837 TACTTTTTAC
58688847 TTTTTCA
1 TTTTTCA
58688854 TTTTTCA
1 TTTTTCA
58688861 TTTTTCA
1 TTTTTCA
58688868 TTTTT
1 TTTTT
58688873 TTTGACTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTCA
Found at i:58689665 original size:8 final size:8
Alignment explanation
Indices: 58689644--58689682 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
58689634 TTGACCTCTC
58689644 CTTTTTCTT
1 CTTTTT-TT
*
58689653 TTTTTTTT
1 CTTTTTTT
58689661 CTTTTTTT
1 CTTTTTTT
58689669 CTTTTTTT
1 CTTTTTTT
58689677 CTTTTT
1 CTTTTT
58689683 CTCCTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
8 23 0.82
9 5 0.18
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (8 bp):
CTTTTTTT
Found at i:58689716 original size:26 final size:26
Alignment explanation
Indices: 58689687--58689756 Score: 72
Period size: 26 Copynumber: 2.7 Consensus size: 26
58689677 CTTTTTCTCC
58689687 TATTTTTGAATTTGATTTT-TTATTTT
1 TATTTTTGAATTT-ATTTTATTATTTT
* *
58689713 TATTTTTTG-ATTTTTTTTATTTTTTT
1 TA-TTTTTGAATTTATTTTATTATTTT
* *
58689739 TATTTTTGATTTTTTTTT
1 TATTTTTGAATTTATTTT
58689757 GAGTCTGAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
25 10 0.26
26 22 0.58
27 6 0.16
ACGTcount: A:0.14, C:0.00, G:0.06, T:0.80
Consensus pattern (26 bp):
TATTTTTGAATTTATTTTATTATTTT
Found at i:58689730 original size:25 final size:24
Alignment explanation
Indices: 58689687--58689756 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
58689677 CTTTTTCTCC
*
58689687 TATTTTTGAATTTGATTTTTTATTTT
1 TATTTTTG-ATTT-TTTTTTTATTTT
*
58689713 TATTTTTTGATTTTTTTTATTTTTTT
1 TA-TTTTTGATTTTTTTT-TTATTTT
58689739 TATTTTTGATTTTTTTTT
1 TATTTTTGATTTTTTTTT
58689757 GAGTCTGAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
24 1 0.03
25 19 0.47
26 14 0.35
27 6 0.15
ACGTcount: A:0.14, C:0.00, G:0.06, T:0.80
Consensus pattern (24 bp):
TATTTTTGATTTTTTTTTTATTTT
Found at i:58689744 original size:17 final size:16
Alignment explanation
Indices: 58689702--58689755 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
58689692 TTGAATTTGA
58689702 TTTTTTA-TTTTTATT
1 TTTTTTATTTTTTATT
58689717 TTTTGATT-TTTTTTATT
1 TTTT--TTATTTTTTATT
*
58689734 TTTTTTATTTTTGATT
1 TTTTTTATTTTTTATT
58689750 TTTTTT
1 TTTTTT
58689756 TGAGTCTGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
15 6 0.18
16 14 0.41
17 14 0.41
ACGTcount: A:0.11, C:0.00, G:0.04, T:0.85
Consensus pattern (16 bp):
TTTTTTATTTTTTATT
Found at i:58691017 original size:19 final size:20
Alignment explanation
Indices: 58690988--58691039 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
58690978 CACTTCGAGA
* *
58690988 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
58691007 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
58691027 AAATG-AATGCAAA
1 AAATGTAATGCAAA
58691040 AAAGAGACGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:58694444 original size:16 final size:17
Alignment explanation
Indices: 58694412--58694451 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
58694402 CTTGCTGTAA
58694412 TGGGC-TTGTTTGGATT
1 TGGGCTTTGTTTGGATT
*
58694428 TGGGCTTTGTTT-TATT
1 TGGGCTTTGTTTGGATT
58694444 TGGG-TTTG
1 TGGGCTTTG
58694452 GCATTTGGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 4 0.18
16 12 0.55
17 6 0.27
ACGTcount: A:0.05, C:0.05, G:0.35, T:0.55
Consensus pattern (17 bp):
TGGGCTTTGTTTGGATT
Found at i:58696406 original size:21 final size:21
Alignment explanation
Indices: 58696374--58696423 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
58696364 TGACATTTTT
58696374 AATTAA-ATAAAAATATTTAA
1 AATTAACATAAAAATATTTAA
58696394 AATTAACATAAAAATATTTAA
1 AATTAACATAAAAATATTTAA
58696415 AATTAACAT
1 AATTAACAT
58696424 TAAGTAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 6 0.21
21 23 0.79
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (21 bp):
AATTAACATAAAAATATTTAA
Found at i:58697300 original size:9 final size:10
Alignment explanation
Indices: 58697281--58697325 Score: 74
Period size: 10 Copynumber: 4.6 Consensus size: 10
58697271 TATTTTTTAA
58697281 TTTTAATTTT
1 TTTTAATTTT
58697291 TTTTAATTTT
1 TTTTAATTTT
58697301 TTTTAA-TTT
1 TTTTAATTTT
*
58697310 TTTTAATTGT
1 TTTTAATTTT
58697320 TTTTAA
1 TTTTAA
58697326 AAAATATTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
9 9 0.27
10 24 0.73
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (10 bp):
TTTTAATTTT
Found at i:58697310 original size:19 final size:20
Alignment explanation
Indices: 58697281--58697325 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
58697271 TATTTTTTAA
*
58697281 TTTTAATTTTTTTTAATTTT
1 TTTTAATTTTTTTTAATTGT
58697301 TTTTAA-TTTTTTTAATTGT
1 TTTTAATTTTTTTTAATTGT
58697320 TTTTAA
1 TTTTAA
58697326 AAAATATTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTTAATTTTTTTTAATTGT
Found at i:58702575 original size:42 final size:41
Alignment explanation
Indices: 58702480--58702619 Score: 147
Period size: 42 Copynumber: 3.4 Consensus size: 41
58702470 GCTAATCAAA
* * * *
58702480 AAACACTGCAAAAGGTTAGAGCTATAGTGGCGTTTCTTCAT
1 AAACACCGCAAAAGGTTAGAGCTATAGAGGCTTTTTTTCAT
** *
58702521 AAACGTCGCAAAAGGTTAGATCTATAGAGGCATTTTTTTCAT
1 AAACACCGCAAAAGGTTAGAGCTATAGAGGC-TTTTTTTCAT
* * *
58702563 AAATACCGCAAAATGTTAGAGCTATAGCGGCGTTTTTATT-AT
1 AAACACCGCAAAAGGTTAGAGCTATAGAGGC-TTTTT-TTCAT
*
58702605 AAACACTGCAAAAGG
1 AAACACCGCAAAAGG
58702620 AAGCAATAAC
Statistics
Matches: 80, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
41 26 0.32
42 52 0.65
43 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (41 bp):
AAACACCGCAAAAGGTTAGAGCTATAGAGGCTTTTTTTCAT
Found at i:58704495 original size:20 final size:19
Alignment explanation
Indices: 58704465--58704502 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
58704455 AATCCAAGGC
*
58704465 ATTTTTTTATTTATCTATT
1 ATTTTTTTATTTACCTATT
58704484 ATTTTATTTATTTACCTAT
1 ATTTT-TTTATTTACCTAT
58704503 ACTTATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTTTTATTTACCTATT
Found at i:58704497 original size:24 final size:24
Alignment explanation
Indices: 58704464--58704533 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 24
58704454 TAATCCAAGG
*
58704464 CATTTTTTTATTTATCTATTATTTT
1 CATTTATTTATTTAT-TATTATTTT
**
58704489 -ATTTATTTACCTA-TACTTATTTT
1 CATTTATTTATTTATTA-TTATTTT
58704512 CATTTA-TTATTTATTTATTATT
1 CATTTATTTATTTA-TTATTATT
58704534 ATTCCTTCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
22 2 0.06
23 12 0.33
24 20 0.56
25 2 0.06
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (24 bp):
CATTTATTTATTTATTATTATTTT
Found at i:58704780 original size:15 final size:15
Alignment explanation
Indices: 58704756--58704798 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
58704746 TTCATATTAC
*
58704756 TATTACTATTATAAA
1 TATTATTATTATAAA
* *
58704771 TATTATTATTATTAC
1 TATTATTATTATAAA
*
58704786 TATTGTTATTATA
1 TATTATTATTATA
58704799 TTTTTATTAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (15 bp):
TATTATTATTATAAA
Found at i:58716678 original size:217 final size:217
Alignment explanation
Indices: 58716288--58716964 Score: 1061
Period size: 217 Copynumber: 3.1 Consensus size: 217
58716278 GAACAGATCG
* * * ***
58716288 AAAGCCAATGATCCTATCTCCCTGAAGTTGCAGTGGAGCGGACTAAAACCACAGATCTTATCTCT
1 AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCT
* * * * *
58716353 CTGAAGTTGCAAAGAGCAGATTGCATCTAGTCTTATCTCCCTAAAGTTGCAGTAGAGTAGACTAA
66 TTGAAGTTGCAGAGAGCAGATTGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
* * * * *
58716418 GCAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGTAGACTGAAGATGGCAAATCTTATCTCCC
131 GTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTATCTCCC
*
58716483 TGAAGTTGCAGTGGAGCAGATT
196 TGAAGTTGCAGTGGAGCAGGTT
* *
58716505 AGAGCAGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCT
1 AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCT
* ** *
58716570 TTGAAGTTACAGAGAGCAGATCCCATCTAGTGTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
66 TTGAAGTTGCAGAGAGCAGATTGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
58716635 GTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTATCTCCC
131 GTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTATCTCCC
58716700 TGAAGTTGCAGTGGAGCAGGTT
196 TGAAGTTGCAGTGGAGCAGGTT
* * * *
58716722 AAAGCCGATAATCCTATCTCCCTAAAGTTGCAGTGGAGCGAATTAAATCTTTGGATCTTATC-CT
1 AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCT
58716786 TCTGAAGTTGCAGAGAGCAGATTGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTA
66 T-TGAAGTTGCAGAGAGCAGATTGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTA
* *
58716851 AGTAAGCAAGTCTTATCCTCTTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTA-CTTC
130 AGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTATCTCC
*
58716915 CTGAAGTTACAGTGGAGCAGGTT
195 CTGAAGTTGCAGTGGAGCAGGTT
58716938 AAAGCCGATAATCCTATCTCCCTGAAG
1 AAAGCCGATAATCCTATCTCCCTGAAG
58716965 GTGTAGAGGA
Statistics
Matches: 422, Mismatches: 37, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
216 54 0.13
217 368 0.87
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (217 bp):
AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCT
TTGAAGTTGCAGAGAGCAGATTGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
GTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTATCTCCC
TGAAGTTGCAGTGGAGCAGGTT
Found at i:58716865 original size:84 final size:84
Alignment explanation
Indices: 58716302--58717330 Score: 358
Period size: 89 Copynumber: 11.8 Consensus size: 84
58716292 CCAATGATCC
* * * *
58716302 TATCTCCCTGAAGTTGCAGTGGAGCGGACTAA-AACCACAGATCTTATCTCTCTGAAGTTGCA-A
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG-TCTTATCTCCCTGAAGTTGCAGT
*
58716365 AGAGCAGATTGCATCTAGTCT
64 GGAGCAGATTGCATCTAGTCT
* * *
58716386 TATCTCCCTAAAGTTGCAGTAGAGTAGACTAAGCAAGCAAGTCTTATC-CTCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATCTC-CCTGAAGTTGCAGT
* * * * *
58716450 -GAGGTAGACTGAAGATGGCAAATCT
64 GGA-GCAGATTG--CAT--CTAGTCT
* * * *
58716475 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCAG-ATAATCCTATCTCCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTA-AGAAGCA-AGTCTTATCTCCCTGAAGTTGCAGT
* ** * *
58716539 GGAGCGGATTAAAACCTTGGATCT
64 GGAGCAGATT-GCATC-TAG-TCT
** * * *** * * *
58716563 TATCTCTTTGAAGTTACAG-AGAGCAGA-T-CCCATCTAGTGTTATCTCCCTGAAGTTGCAGTGG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
* * * *
58716625 AGCAGACTAAGTAAGCAAGTCT
66 AGCAGA-T-TG-CATCTAGTCT
* * * **
58716647 TATC-CTCCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTGCAG
1 TATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCTTATCTCCCTGAAGTTGCAG
* *** * *
58716711 TGGAGCAGGTTAAAGCCGATAATCC
63 TGGAGCAGATT---GCATCTAGTCT
* * * * ** *
58716736 TATCTCCCTAAAGTTGCAGTGGAGC-GAATTA-AATCTTTGGATCTTATC-CTTCTGAAGTTGCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC--AAG-TCTTATCTC-CCTGAAGTTGCA
*
58716798 G-AGAGCAGATTGCATCTAGTCT
62 GTGGAGCAGATTGCATCTAGTCT
* *
58716820 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC-CTCTTGAAGTTACAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATCTC-CCTGAAGTTGCAGT
* * * * **
58716884 GGGGCAGACTGAAGATGGCAAACCT
64 GGAGCAGATTG--CAT--CTAGTCT
* * * * * * * *
58716909 TA-CTTCCTGAAGTTACAGTGGAGCAG-GTTA-AAGCCGATAATCCTATCTCCCTGAAGGTGTAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTATCTCCCTGAAGTTGCAG
* * * * *
58716971 AGGAGCAGACTAAGTAAGCAAGTCT
63 TGGAGCAGA-T-TG-CATCTAGTCT
* ** * * *
58716996 TATC-CTCCTGAAGTTGCAGTGGTGCAGACTAA-ATATGGCAAACCTTATCTCCATGAGGATGCA
1 TATCTC-CCTGAAGTTGCAGTGGAGCAGACTAAGA-A--GCAAGTCTTATCTCCCTGAAGTTGCA
* * *** * *
58717059 GTGGAGTAGGTTAAAGCCGATAATCC
62 GTGGAGCAGATT---GCATCTAGTCT
* * ** * ** ** *
58717085 TATCCCCCTGAAGTTGTAGTGGAGTGGATTAA-ATCCTTGGATCTTATCTCTCTGAAGTTGCAG-
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTATCTCCCTGAAGTTGCAGT
* **
58717148 AGAGCAGATCACATCTAGTCT
64 GGAGCAGATTGCATCTAGTCT
* *
58717169 TGTCTCTCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC-CTCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATCTC-CCTGAAGTTGCAGT
* * * *
58717233 GGGGCAGATTGAAGATGGCAAATCT
64 GGAGCAGATTG--CAT--CTAGTCT
* * * * * *
58717258 TATCTCCTTGAAGTTGCAGTGGAGCAGATTAA-AAGTTGATAATCCTATCTCCCTGAAGTTGCAA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG--CA-AGTCTTATCTCCCTGAAGTTGCAG
58717322 TGGAGCAGA
63 TGGAGCAGA
58717331 CTAAGTAGAG
Statistics
Matches: 679, Mismatches: 194, Indels: 138
0.67 0.19 0.14
Matches are distributed among these distances:
83 3 0.00
84 195 0.29
85 41 0.06
86 15 0.02
87 45 0.07
88 126 0.19
89 212 0.31
90 39 0.06
91 2 0.00
92 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (84 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
AGCAGATTGCATCTAGTCT
Found at i:58716876 original size:44 final size:42
Alignment explanation
Indices: 58716302--58717335 Score: 387
Period size: 44 Copynumber: 23.8 Consensus size: 42
58716292 CCAATGATCC
* *
58716302 TATCTCCCTGAAGTTGCAGTGGAGCGGACTAA-AACCACAGATCT
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG-TCT
** * * * *
58716346 TATCTCTCTGAAGTTGCA-AAGAGCAGA-T-TGCATCTAGTCT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
* * *
58716386 TATCTCCCTAAAGTTGCAGTAGAGTAGACTAAGCAAGCAAGTCT
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * *
58716430 TATCCTCCTGAAGTTGCAGT-GAGGTAGACTGAAGATGGCAAATCT
1 TAT-CTCCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* * * *
58716475 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCAG-ATAATCC
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTA-AGAAGCA-AGTCT
* * * **
58716519 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTGGATCT
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * *** * * *
58716563 TATCTCTTTGAAGTTACAG-AGAGCAGA-T-CCCATCTAGTGT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
58716603 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * **
58716647 TATCCTCCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCT
1 TAT-CTCCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCT
* * * *
58716692 TATCTCCCTGAAGTTGCAGTGGAGCAG-GTTA-AAGCCGATAATCC
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * * * **
58716736 TATCTCCCTAAAGTTGCAGTGGAGC-GAATTA-AATCTTTGGATCT
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAGC--AAG-TCT
* * * * * *
58716780 TATCCTTCTGAAGTTGCAG-AGAGCAGA-T-TGCATCTAGTCT
1 TAT-CTCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
58716820 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * * **
58716864 TATCCTCTTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCT
1 TAT-CTCCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCT
* * * * *
58716909 TA-CTTCCTGAAGTTACAGTGGAGCAG-GTTA-AAGCCGATAATCC
1 TATC-TCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * *
58716952 TATCTCCCTGAAGGTGTAGAGGAGCAGACTAAGTAAGCAAGTCT
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* **
58716996 TATCCTCCTGAAGTTGCAGTGGTGCAGACTAA-ATATGGCAAACCT
1 TAT-CTCCTGAAGTTGCAGTGGAGCAGACTAAGA-A--GCAAGTCT
* * * * * * *
58717041 TATCTCCATGAGGATGCAGTGGAGTAG-GTTA-AAGCCGATAATCC
1 TATCTCC-TGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * ** * ** **
58717085 TATCCCCCTGAAGTTGTAGTGGAGTGGATTAA-ATCCTTGGATCT
1 TAT-CTCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * *
58717129 TATCTCTCTGAAGTTGCAG-AGAGCAGA-TCA-CATCTAGTCT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
58717169 TGTCTCTCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * *
58717213 TATCCTCCTGAAGTTGCAGTGGGGCAGATTGAAGATGGCAAATCT
1 TAT-CTCCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCT
* * * *
58717258 TATCTCCTTGAAGTTGCAGTGGAGCAGATTAA-AAGTTGATAATCC
1 TATCTCC-TGAAGTTGCAGTGGAGCAGACTAAGAAG--CA-AGTCT
*
58717303 TATCTCCCTGAAGTTGCAATGGAGCAGACTAAG
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAG
58717336 TAGAGCAGAT
Statistics
Matches: 755, Mismatches: 155, Indels: 158
0.71 0.15 0.15
Matches are distributed among these distances:
39 2 0.00
40 75 0.10
41 42 0.06
42 22 0.03
43 51 0.07
44 368 0.49
45 187 0.25
46 5 0.01
47 3 0.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (42 bp):
TATCTCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
Found at i:58716983 original size:132 final size:133
Alignment explanation
Indices: 58716820--58717108 Score: 438
Period size: 132 Copynumber: 2.2 Consensus size: 133
58716810 CATCTAGTCT
* *
58716820 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCTTGAAGTTACAGTG
1 TATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTG
* *
58716885 GGGCAGACTGAAGATGGCAAACCTTA-CTTCC-TGAAGTTACAGTGGAGCAGGTTAAAGCCGATA
66 GGGCAGACTAAAGATGGCAAACCTTATC-TCCATGAAGATACAGTGGAGCAGGTTAAAGCCGATA
58716948 ATCC
130 ATCC
* * *
58716952 TATCTCCCTGAAGGTGTAGAGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTG
* * * * *
58717017 GTGCAGACTAAATATGGCAAACCTTATCTCCATGAGGATGCAGTGGAGTAGGTTAAAGCCGATAA
66 GGGCAGACTAAAGATGGCAAACCTTATCTCCATGAAGATACAGTGGAGCAGGTTAAAGCCGATAA
58717082 TCC
131 TCC
*
58717085 TATCCCCCTGAAGTTGTAGTGGAG
1 TATCTCCCTGAAGTTGTAGTGGAG
58717109 TGGATTAAAT
Statistics
Matches: 140, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
132 86 0.61
133 54 0.39
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (133 bp):
TATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTG
GGGCAGACTAAAGATGGCAAACCTTATCTCCATGAAGATACAGTGGAGCAGGTTAAAGCCGATAA
TCC
Found at i:58717007 original size:349 final size:351
Alignment explanation
Indices: 58716603--58717342 Score: 1148
Period size: 349 Copynumber: 2.1 Consensus size: 351
58716593 CATCTAGTGT
*
58716603 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTG
1 TATCTCCCTGAAGTTGCAGAGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTG
* * *
58716668 GGGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAA
66 GGGCAGACTAAAGATGGCAAACCTTATCTCCATGAAGATGCAGTGGAGCAGGTTAAAGCCGATAA
* *
58716733 TCCTATCTCCCTAAAGTTGCAGTGGAGCGAATTAAATCTTTGGATCTTATC-CTTCTGAAGTTGC
131 TCCTATCCCCCTAAAGTTGCAGTGGAGCGAATTAAATCCTTGGATCTTATCTC-TCTGAAGTTGC
**
58716797 AGAGAGCAGATTGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
195 AGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
*
58716862 CTTATCCTCTTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTA-CTTCC-TGAAGTTAC
260 CTTATCCTCCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTATC-TCCTTGAAGTTAC
*
58716925 AGTGGAGCAGGTT-AAAGCCGATAATCC
324 AGTGGAGCAGATTAAAAGCCGATAATCC
* * *
58716952 TATCTCCCTGAAGGTGTAGAGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGAGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTG
* * * *
58717017 GTGCAGACTAAATATGGCAAACCTTATCTCCATGAGGATGCAGTGGAGTAGGTTAAAGCCGATAA
66 GGGCAGACTAAAGATGGCAAACCTTATCTCCATGAAGATGCAGTGGAGCAGGTTAAAGCCGATAA
* * * *
58717082 TCCTATCCCCCTGAAGTTGTAGTGGAGTGGATTAAATCCTTGGATCTTATCTCTCTGAAGTTGCA
131 TCCTATCCCCCTAAAGTTGCAGTGGAGCGAATTAAATCCTTGGATCTTATCTCTCTGAAGTTGCA
* *
58717147 GAGAGCAGATCACATCTAGTCTTGTCTCTCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTC
196 GAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTC
* * * *
58717212 TTATCCTCCTGAAGTTGCAGTGGGGCAGATTGAAGATGGCAAATCTTATCTCCTTGAAGTTGCAG
261 TTATCCTCCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTATCTCCTTGAAGTTACAG
**
58717277 TGGAGCAGATTAAAAGTTGATAATCC
326 TGGAGCAGATTAAAAGCCGATAATCC
58717303 TATCTCCCTGAAGTTGCA-ATGGAGCAGACTAAGTAGAGCA
1 TATCTCCCTGAAGTTGCAGA-GGAGCAGACTAAGTA-AGCA
58717343 GATCGCATGA
Statistics
Matches: 354, Mismatches: 31, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
349 284 0.80
350 23 0.06
351 43 0.12
352 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (351 bp):
TATCTCCCTGAAGTTGCAGAGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTG
GGGCAGACTAAAGATGGCAAACCTTATCTCCATGAAGATGCAGTGGAGCAGGTTAAAGCCGATAA
TCCTATCCCCCTAAAGTTGCAGTGGAGCGAATTAAATCCTTGGATCTTATCTCTCTGAAGTTGCA
GAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTC
TTATCCTCCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTATCTCCTTGAAGTTACAG
TGGAGCAGATTAAAAGCCGATAATCC
Found at i:58718245 original size:19 final size:20
Alignment explanation
Indices: 58718204--58718245 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
58718194 ATTTCTATGC
* *
58718204 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
58718224 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
58718243 CAT
1 CAT
58718246 CACATCATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:58719598 original size:3 final size:3
Alignment explanation
Indices: 58719590--58719679 Score: 67
Period size: 3 Copynumber: 28.3 Consensus size: 3
58719580 ATAGGTAAGT
*
58719590 ATA ATA ATA ATAA ATA AT- ATA ATTA ATA ATA ATA ATA ATA ATA ACAA
1 ATA ATA ATA AT-A ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA A-TA
* * *
58719637 ATA ATGCA ATA ATA ATG ATGCA ATA ACA ATA TTA ATA A-A ATA A
1 ATA AT--A ATA ATA ATA AT--A ATA ATA ATA ATA ATA ATA ATA A
58719680 ACTAAAAAAG
Statistics
Matches: 70, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
2 4 0.06
3 53 0.76
4 8 0.11
5 5 0.07
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Done.