Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 195 of 230
Found at i:58721189 original size:50 final size:50
Alignment explanation
Indices: 58721128--58721718 Score: 285
Period size: 50 Copynumber: 11.8 Consensus size: 50
58721118 TGCAATGTTG
* * * * * *
58721128 GGGAAACAAGATTCGCCGTTGTGACTTCAATCTATTCCACTACACCGCCA
1 GGGAAGCAAGATCCGCCGTTGTGACTTCAATCTGTTCCACTGCAACGTCA
* * * * * ** * *
58721178 GGGAAGTAAGATCCACCATTGTGGCTTCAATCTTTTTAATTGCAATGTCA
1 GGGAAGCAAGATCCGCCGTTGTGACTTCAATCTGTTCCACTGCAACGTCA
* * * * * * *
58721228 GGGAAACCAGATCCTCCATCGT-AGCTTCAATCTGTTCCACTGCACCATCA
1 GGGAAGCAAGATCCGCCGTTGTGA-CTTCAATCTGTTCCACTGCAACGTCA
* * * * ** * *
58721278 GGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCA
1 GGGAAGCAAGATCCGCCGTTGTGACTTCAATCTGTTCCACTGCAACGTCA
* * * * * * * *
58721328 GGGAAACCAGATCCACCATCGTAACTTCAATCTGTTCCACTGCACCGCCA
1 GGGAAGCAAGATCCGCCGTTGTGACTTCAATCTGTTCCACTGCAACGTCA
* * * * ** * * * **
58721378 GGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGTAATGTTG
1 GGGAAGCAAGATCCGCCGTTGTGACTTCAATCTGTTCCACTGCAACGTCA
* * * * * * *
58721428 GGGAAACCAGATCCGCCGTCGT-AGCTTCAATCTGTTCTACTGTACCGCCA
1 GGGAAGCAAGATCCGCCGTTGTGA-CTTCAATCTGTTCCACTGCAACGTCA
* * * * * ** * *
58721478 GGGAAGTAAGATCCGTCATTGTGGCTTCAATCTTTTTAATTGCAATGTCA
1 GGGAAGCAAGATCCGCCGTTGTGACTTCAATCTGTTCCACTGCAACGTCA
* * * * *
58721528 GGGAAACCAGATCCACCGTTGT-AGCTTCAATCTATTCCACTGCATCG-CTA
1 GGGAAGCAAGATCCGCCGTTGTGA-CTTCAATCTGTTCCACTGCAACGTC-A
* * * * * * ** * * *
58721578 AGGAAGTAAGATTCGTCGTTGTGGCTTTAATCT-TTAAATTGCAATGTCG
1 GGGAAGCAAGATCCGCCGTTGTGACTTCAATCTGTTCCACTGCAACGTCA
* * * * * *
58721627 GGGAAACCAGATCCGCCGTCGT-AGCTTCAATCTGTTCCACTACACCGCCA
1 GGGAAGCAAGATCCGCCGTTGTGA-CTTCAATCTGTTCCACTGCAACGTCA
* * *
58721677 GGGAAGCAAGATTCGCCGTTGTGGCTTCAATCCGTTCCACTG
1 GGGAAGCAAGATCCGCCGTTGTGACTTCAATCTGTTCCACTG
58721719 TAATGCCAAA
Statistics
Matches: 371, Mismatches: 159, Indels: 22
0.67 0.29 0.04
Matches are distributed among these distances:
49 32 0.09
50 339 0.91
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (50 bp):
GGGAAGCAAGATCCGCCGTTGTGACTTCAATCTGTTCCACTGCAACGTCA
Found at i:58721256 original size:100 final size:100
Alignment explanation
Indices: 58721102--58721708 Score: 806
Period size: 100 Copynumber: 6.1 Consensus size: 100
58721092 GGATTATTTT
* ** * * * * *
58721102 CTTCAAT-TTGTTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTTGT-GACTTCAATCTATTC
1 CTTCAATCTT-TTTAATTGCAATGTCAGGGAAACCAGATCCACCGTCGTAG-CTTCAATCTGTTC
* * *
58721165 CACTACACCGCCAGGGAAGTAAGATCCACCATTGTGG
64 CACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
* *
58721202 CTTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCTCCATCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCACCGTCGTAGCTTCAATCTGTTCCA
** *
58721267 CTGCACCATCAGGGAAGTAAGATCTGCCGTTGTGG
66 CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
* *
58721302 CTTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCACCATCGTAACTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCACCGTCGTAGCTTCAATCTGTTCCA
*
58721367 CTGCACCGCCAGGGAAGTAAGATCTGCCGTTGTGG
66 CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
* ** * *
58721402 CTTCAATCTTTTTAATTGTAATGTTGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCTA
1 CTTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCACCGTCGTAGCTTCAATCTGTTCCA
* * *
58721467 CTGTACCGCCAGGGAAGTAAGATCCGTCATTGTGG
66 CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
* *
58721502 CTTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCACCGTTGTAGCTTCAATCTATTCCA
1 CTTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCACCGTCGTAGCTTCAATCTGTTCCA
* * * * *
58721567 CTGCATCGCTAAGGAAGTAAGATTCGTCGTTGTGG
66 CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
* * * *
58721602 CTTTAATC-TTTAAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCACCGTCGTAGCTTCAATCTGTTCCA
* * *
58721666 CTACACCGCCAGGGAAGCAAGATTCGCCGTTGTGG
66 CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
58721701 CTTCAATC
1 CTTCAATC
58721709 CGTTCCACTG
Statistics
Matches: 449, Mismatches: 56, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
99 87 0.19
100 359 0.80
101 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (100 bp):
CTTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCACCGTCGTAGCTTCAATCTGTTCCA
CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
Found at i:58722867 original size:31 final size:31
Alignment explanation
Indices: 58722829--58722892 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
58722819 TTCCCTTGTG
58722829 AAAGTTTTATTAGTCCATTAATCATTATTCT
1 AAAGTTTTATTAGTCCATTAATCATTATTCT
58722860 AAAGTTTTATTAGTCCATTAATCATTATTCT
1 AAAGTTTTATTAGTCCATTAATCATTATTCT
58722891 AA
1 AA
58722893 TGCAACATGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.47
Consensus pattern (31 bp):
AAAGTTTTATTAGTCCATTAATCATTATTCT
Found at i:58723424 original size:15 final size:14
Alignment explanation
Indices: 58723385--58723438 Score: 58
Period size: 15 Copynumber: 3.8 Consensus size: 14
58723375 CCCTTTTTTA
58723385 TTTTTC-TTTTTCT
1 TTTTTCATTTTTCT
58723398 TTTTCATCATTTTTCT
1 TTTT--TCATTTTTCT
*
58723414 TTTTTCGATTTTGCT
1 TTTTTC-ATTTTTCT
58723429 TTTTT-ATTTT
1 TTTTTCATTTT
58723439 GATTCTAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
13 9 0.25
14 2 0.06
15 14 0.39
16 11 0.31
ACGTcount: A:0.07, C:0.13, G:0.04, T:0.76
Consensus pattern (14 bp):
TTTTTCATTTTTCT
Found at i:58728343 original size:18 final size:18
Alignment explanation
Indices: 58728320--58728382 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
58728310 ATGTAAGTAT
58728320 AATAATAAATAATATAAG
1 AATAATAAATAATATAAG
* * *
58728338 AATAATTATTAATATGAAT
1 AATAATAAATAATAT-AAG
58728357 AATAAT-AATAA-ATAATG
1 AATAATAAATAATATAA-G
58728374 CAATAATAA
1 -AATAATAA
58728383 TGATGCAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
16 2 0.06
17 2 0.06
18 23 0.64
19 9 0.25
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.32
Consensus pattern (18 bp):
AATAATAAATAATATAAG
Found at i:58728390 original size:14 final size:15
Alignment explanation
Indices: 58728360--58728393 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
58728350 TATGAATAAT
58728360 AATAATAAATAATGC
1 AATAATAAATAATGC
*
58728375 AATAAT-AATGATGC
1 AATAATAAATAATGC
58728389 AATAA
1 AATAA
58728394 CAATATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (15 bp):
AATAATAAATAATGC
Found at i:58736885 original size:12 final size:12
Alignment explanation
Indices: 58736868--58736892 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
58736858 AAATTGAGAC
58736868 TATCCCTTCAGA
1 TATCCCTTCAGA
58736880 TATCCCTTCAGA
1 TATCCCTTCAGA
58736892 T
1 T
58736893 TTTCTTGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.36
Consensus pattern (12 bp):
TATCCCTTCAGA
Found at i:58737838 original size:132 final size:131
Alignment explanation
Indices: 58737488--58738321 Score: 1053
Period size: 132 Copynumber: 6.4 Consensus size: 131
58737478 CCCCTTGATT
* * *
58737488 AGCAGTGGAGTAGGTTGAATATTGTAGATCATGTCTCTCTAAGCAGTAGCGGAGCAGATCGAAGA
1 AGCAGTGGAGTAGGTTGAAGAATGTAGATC-TGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGA
* * * * *
58737553 TGTTGAGTCTTATCTTCCCAAAGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGA
65 CGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTGA
58737618 GC
130 GC
* * * *
58737620 AGCAGCTGAGAGTAGGTTGAAGAATGTAGATCTTGTTTCCCTAAGTAGCAGTGGAGCAGATCGAA
1 AGCAG-TG-GAGTAGGTTGAAGAATGTAGATC-TGTCTCCCTAAGCAGTAGCGGAGCAGATCGAA
*
58737685 GACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCTTATCTCCCT
63 GACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCT
*
58737750 GATC
128 GAGC
*
58737754 AGCAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGA
1 AGCAGTGGAGTAGGTTGAAGAATGTAGATCT-GTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGA
* * *
58737819 TGGAGAATCTTATTTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTGA
65 CGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTGA
58737884 GC
130 GC
* *
58737886 AGTAGTGGAGTAGGTTGAAGAATGTAGATTTGGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGA
1 AGCAGTGGAGTAGGTTGAAGAATGTAGATCT-GTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGA
* * * * *
58737951 CAGTGAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCTACTAAT-CTCATCTCCCTT
65 CGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCT-ATCTCCCTG
58738015 AGC
129 AGC
* * *
58738018 AGTAGTGGAGTAGG-T--AG-ATCT--A---GTCTCCCTAAGTAGTAGCGGAGCAGATCGAAGAC
1 AGCAGTGGAGTAGGTTGAAGAATGTAGATCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
* * * *
58738074 GGTGAATCTTATCTTCTCAAGGTAGTAGGGAAACAGATTTAGGCTACTAAT-CTCATCTCCCTGA
66 GGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCT-ATCTCCCTGA
58738138 GC
130 GC
* * **
58738140 AGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGTA-ATAAAAAA
1 AGCAGTGGAGTAGGTTGAAGAATGTAGATC-TGTCTCCCTAAGCAGTAGCGGAGCAGAT--CGAA
* * * *
58738204 AATGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGTCACTAATCCTATCTCCCT
63 GACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCT
*
58738269 AAGC
128 GAGC
** * * * *
58738273 AGTTGTGGAGTAGGTTGAAGATTGCAGATCATGTCTCCTTGAGCAGTAG
1 AGCAGTGGAGTAGGTTGAAGAATGTAGATC-TGTCTCCCTAAGCAGTAG
58738322 TAGAGCGGGT
Statistics
Matches: 619, Mismatches: 66, Indels: 33
0.86 0.09 0.05
Matches are distributed among these distances:
122 107 0.17
123 1 0.00
125 2 0.00
126 4 0.01
128 4 0.01
129 2 0.00
131 6 0.01
132 271 0.44
133 105 0.17
134 117 0.19
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (131 bp):
AGCAGTGGAGTAGGTTGAAGAATGTAGATCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
GGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTGAG
C
Found at i:58738423 original size:51 final size:51
Alignment explanation
Indices: 58738339--58738461 Score: 140
Period size: 51 Copynumber: 2.4 Consensus size: 51
58738329 GGTCGAAGAT
* * * **
58738339 AGCAAATTTTATTTCCCTGACGTTTCAATGGAACGGATTAAAGCTGAAGGC
1 AGCAAATCTTATTTCCCTGGCGTTTCAACGGAACAAATTAAAGCTGAAGGC
*
58738390 AGCAAATCTTATTTCCCTGGCGTTGT-AACGGAACAAATTAAAGTTGAAGGC
1 AGCAAATCTTATTTCCCTGGCGTT-TCAACGGAACAAATTAAAGCTGAAGGC
* * * *
58738441 AACGAATCTCATCTCCCTGGC
1 AGCAAATCTTATTTCCCTGGC
58738462 ATTTAAAATT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
51 60 0.98
52 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (51 bp):
AGCAAATCTTATTTCCCTGGCGTTTCAACGGAACAAATTAAAGCTGAAGGC
Found at i:58739173 original size:5 final size:5
Alignment explanation
Indices: 58739158--58739190 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
58739148 TATCTACTTA
58739158 TTTATT TTTAT TTTAT TTTA- TTTAT TTTAT TTT
1 TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
58739191 TGTTTGTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.15
5 18 0.69
6 4 0.15
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:58739183 original size:14 final size:14
Alignment explanation
Indices: 58739164--58739190 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
58739154 CTTATTTATT
58739164 TTTATTTTATTTTA
1 TTTATTTTATTTTA
58739178 TTTATTTTATTTT
1 TTTATTTTATTTT
58739191 TGTTTGTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:58739959 original size:17 final size:16
Alignment explanation
Indices: 58739894--58739960 Score: 59
Period size: 16 Copynumber: 4.1 Consensus size: 16
58739884 CAAGGCATTT
*
58739894 TTTTATTTATCTATTA
1 TTTTATTTATTTATTA
58739910 TTTTATTTATTTACCTTA
1 TTTTATTTATTTA--TTA
*
58739928 CTTATT-TTCATTTATTA
1 -TT-TTATTTATTTATTA
58739945 -TTTATTTA-TTATTA
1 TTTTATTTATTTATTA
58739959 TT
1 TT
58739961 CCTTCATTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 13
0.72 0.05 0.22
Matches are distributed among these distances:
14 8 0.19
15 5 0.12
16 12 0.29
17 3 0.07
18 3 0.07
19 9 0.21
20 2 0.05
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTATTTATTTATTA
Found at i:58740164 original size:3 final size:3
Alignment explanation
Indices: 58740156--58740244 Score: 56
Period size: 3 Copynumber: 30.0 Consensus size: 3
58740146 ATATCCGTTG
* * * * *
58740156 TTA TTA TTA TCA TTC TTA TCT- TCA TTA TTA CTA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
58740201 ATA ATA ATA TTA TTA TTA TTA CTA TTG TTA TTA -TA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
58740245 CAATTTATCT
Statistics
Matches: 65, Mismatches: 18, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
2 2 0.03
3 62 0.95
4 1 0.02
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:58740231 original size:15 final size:15
Alignment explanation
Indices: 58740179--58740234 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
58740169 TCTTATCTTC
*
58740179 ATTATTACTATTACT
1 ATTATTATTATTACT
* * *
58740194 ATTATTAATAATAAT
1 ATTATTATTATTACT
58740209 ATTATTATTATTACT
1 ATTATTATTATTACT
*
58740224 ATTGTTATTAT
1 ATTATTATTAT
58740235 ATTTTTATTA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTATTATTATTACT
Found at i:58742996 original size:59 final size:59
Alignment explanation
Indices: 58742904--58744035 Score: 1674
Period size: 59 Copynumber: 19.2 Consensus size: 59
58742894 AAAGATGGGC
* * * **
58742904 CATATTTCATAATAATTATATGAGTAATTAATTAATTTTCAATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * *
58742963 CATATTTTATAATAATTTTAGGAATAATTAATTAATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* **
58743022 CAAATTTCATAATAATTCTACAAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* **
58743081 CAAATTTCATAATAATTCTACAAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* *
58743140 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTAGATTAATTAAATAAATATT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * *
58743199 CATATTTCATAATAATTATACGAATAATTAATTAATTTTTTATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * * * *
58743258 CATATTTTATAATAGTTTTATGAATAATTAATTCATTTTAGATCAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* *
58743317 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTAGATTAATTAAATAAATATT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* *
58743376 CATATTTCATAATAATTATATGAATAATTAATTAATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * * *
58743435 CAT-TTTTATAATAATTTTAAGAATAATTAATTTATTTTAGATTAATTAAATAAGTAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* **
58743493 CATATTTCATAATAATTATATGAATAATTAATTTATTTTCAATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * * *
58743552 CATATTTTATAATAATTTTATGAATAATTGATTTATTTTAGATTAGTTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* *
58743611 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTAGATTAATTAAATAAATATT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * *
58743670 CATAATTCATAATAATTATACGAATAATTAA-TTATTTTTTATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * *
58743728 CATATTTTATAATAATTTTATGAATAATTAATTTATTTTTGATTAATTAATTAAATAAC
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
*
58743787 CATATCTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * *
58743846 CATATTTTATAATAATTGTAGGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * * *
58743905 CATATTTAATAATAATTCTATGAATAATTAATTAATTGTCGATTAATTAAATAAATATT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
*
58743964 CATATTTCATAATAATTCTATGAATAATTTATTTATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
58744023 CATATTTCATAAT
1 CATATTTCATAAT
58744036 GATTATCATA
Statistics
Matches: 972, Mismatches: 99, Indels: 4
0.90 0.09 0.00
Matches are distributed among these distances:
58 103 0.11
59 869 0.89
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.47
Consensus pattern (59 bp):
CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
Found at i:58743774 original size:19 final size:20
Alignment explanation
Indices: 58743742--58743779 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
58743732 TTTTATAATA
58743742 ATTTTATGAATAATTAATTT
1 ATTTTATGAATAATTAATTT
*
58743762 ATTTT-TGATTAATTAATT
1 ATTTTATGAATAATTAATT
58743780 AAATAACCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
ATTTTATGAATAATTAATTT
Found at i:58743893 original size:31 final size:29
Alignment explanation
Indices: 58742928--58744011 Score: 246
Period size: 32 Copynumber: 36.8 Consensus size: 29
58742918 ATTATATGAG
* **
58742928 TAATTAATTAATTTTCAATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * *
58742955 TAAATAATCATATTTTAT-AATAATTTTAGGAA
1 TAATTAAT-TTATTTT-TGATTAA-TTTA-GAA
*
58742987 TAATTAATTAATTTTTGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* ** * * *
58743014 TAAATAATCAAATTTCAT-AATAATTCTACAAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
58743046 TAATTAATTTATTTTTGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* ** * * *
58743073 TAAATAATCAAATTTCAT-AATAATTCTACAAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
58743105 TAATTAATTTATTTTTGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
58743132 TAAATAATCATATTTCAT-AATAATTCTATGAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
*
58743164 TAATTAATTTATTTTAGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
58743191 TAAAT-ATTCATATTTCATAATAATTATACGAA
1 TAATTAATTTATTTTTGAT--TAATT-TA-GAA
* *
58743223 TAATTAATTAATTTTTTATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
58743250 TAAATAATCATATTTTAT-AATAGTTTTATGAA
1 TAATTAAT-TTATTTT-TGATTA-ATTTA-GAA
* * *
58743282 TAATTAATTCATTTTAGATCAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
58743309 TAAATAATCATATTTCAT-AATAATTCTATGAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
*
58743341 TAATTAATTTATTTTAGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
58743368 TAAAT-ATTCATATTTCATAATAATTATATGAA
1 TAATTAATTTATTTTTGAT--TAATT-TA-GAA
*
58743400 TAATTAATTAATTTTTGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* *
58743427 TAAATAA-TCATTTTT-ATAATAATTTTAAGAA
1 TAATTAATTTATTTTTGAT--TAA-TTT-AGAA
*
58743458 TAATTAATTTATTTTAGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
58743485 TAAGTAATCATATTTCAT-AATAATTATATGAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
**
58743517 TAATTAATTTATTTTCAATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * *
58743544 TAAATAATCATATTTTAT-AATAATTTTATGAA
1 TAATTAAT-TTATTTT-TGATTAA-TTTA-GAA
* * *
58743576 TAATTGATTTATTTTAGATT-AGTTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
58743603 TAAATAATCATATTTCAT-AATAATTCTATGAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
*
58743635 TAATTAATTTATTTTAGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * ** *
58743662 TAAAT-ATTCATAATTCATAATAATTATACGAA
1 TAATTAATTTATTTTTGAT--TAATT-TA-GAA
*
58743694 TAATTAA-TTATTTTTTATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * *
58743720 TAAATAATCATATTTTAT-AATAATTTTATGAA
1 TAATTAAT-TTATTTT-TGATTAA-TTTA-GAA
*
58743752 TAATTAATTTATTTTTGATTAA-TTA-AT
1 TAATTAATTTATTTTTGATTAATTTAGAA
* ** ** *
58743779 TAAATAACCATATCTCAT-AATAATTCTATGAA
1 TAATTAA-TTTAT-TTTTGATTAATT-TA-GAA
58743811 TAATTAATTTATTTTTGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * *
58743838 TAAATAATCATATTTTAT-AATAATTGTAGGAA
1 TAATTAAT-TTATTTT-TGATTAATT-TA-GAA
58743870 TAATTAATTTATTTTTGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
58743897 TAAATAATCATATTTAAT-AATAATTCTATGAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
* * *
58743929 TAATTAATTAATTGTCGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
58743956 TAAAT-ATTCATATTTCATAATAATTCTATGAA
1 TAATTAATTTATTTTTGAT--TAATT-TA-GAA
*
58743988 TAATTTATTTATTTTTGATTAATT
1 TAATTAATTTATTTTTGATTAATT
58744012 AAATAAATAA
Statistics
Matches: 755, Mismatches: 174, Indels: 252
0.64 0.15 0.21
Matches are distributed among these distances:
25 2 0.00
26 49 0.06
27 138 0.18
28 127 0.17
29 62 0.08
30 61 0.08
31 132 0.17
32 151 0.20
33 33 0.04
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (29 bp):
TAATTAATTTATTTTTGATTAATTTAGAA
Found at i:58750275 original size:43 final size:43
Alignment explanation
Indices: 58750211--58750292 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
58750201 CAAAAACGCA
** *
58750211 TTTGTGGGAAAAGTGCCGCTAAAGGTCATGTTCTATAGCGACG
1 TTTGTGGGAAAAGCACAGCTAAAGGTCATGTTCTATAGCGACG
58750254 TTTGTGGGAAAAGCACAGCTAAAGGTCATGTTCTATAGC
1 TTTGTGGGAAAAGCACAGCTAAAGGTCATGTTCTATAGC
58750293 AGTGTTTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (43 bp):
TTTGTGGGAAAAGCACAGCTAAAGGTCATGTTCTATAGCGACG
Found at i:58753297 original size:23 final size:22
Alignment explanation
Indices: 58753254--58753311 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
58753244 AACGGGTATC
* *
58753254 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
58753275 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
58753298 TGCATATCATATCT
1 TACAAATCATATCT
58753312 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:58753879 original size:132 final size:132
Alignment explanation
Indices: 58753636--58756787 Score: 5198
Period size: 132 Copynumber: 23.9 Consensus size: 132
58753626 GCAACTTCAC
* * * **
58753636 GGAGATAAGA-CTTACAATTTTCAACCTATTCCACTACTGTCCAGGG-AGATATG-ATTACTGGC
1 GGAGATAAGATCTGA-AATCTTCAATCTATTCCACTGTTGTCCAGGGAAG-TA-GAATTACTGGC
* **
58753698 TTCAATGTACTCCACTTTAACCACAGGGAGGTAAAATCTACCATCTTCGATCTGCTCCACTACTG
63 TTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTG
58753763 CTTAG
128 CTTAG
*
58753768 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58753833 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATTTTCGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58753898 AG
131 AG
*
58753900 GGAGATAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58753965 AATGTACTCCACTGTAACCACAGCGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58754030 AG
131 AG
* * * *
58754032 GGAGATAAGACCTGAAATCTTCAATATATTCCAATGTTGTCCAGGGAAGTAGAATTATTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * * *
58754097 AATATAGTCCACTATAACCACAGGGAGGTAAAATCCTCTATCTTCGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58754162 AG
131 AG
*
58754164 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCTA-GGAAGTAGAATTATTGGCTT
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCC-AGGGAAGTAGAATTACTGGCTT
* * *
58754228 CAATGTACTCTACTATAACCACATGGAGGTAAAATCCGCCATCTTCGATCTGCTTCACTACTGCT
65 CAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCT
58754293 TAG
130 TAG
* * * *
58754296 GGAGATAAGCTCTAAAATCTTCAATCTATTCTATTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * *
58754361 AATGTACTCCACTGTAACCACAGGGAGCTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58754426 AG
131 AG
* *
58754428 GGAGATAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCTAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58754493 AATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGATCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58754558 AG
131 AG
* * *
58754560 GGAGATAAGATCTAAAATCTTCAATCTATTCCACTGTTGTTCAGGGAAGTAGAATTACTGGCTTT
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58754625 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATGTTCGATCTGCTCCACTACAGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58754690 AG
131 AG
* *
58754692 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58754757 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGTTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58754822 AG
131 AG
* *
58754824 GGAGATAAGACCTGAAATCTTCAATCTATTCTACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * * *
58754889 AATGTACTCCACTATAACCACAGGAAGGTAAAATCTGCCATCTTCGATCTGATCCACTACAGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58754954 AG
131 AG
* * *
58754956 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCCAGGGAAGTAGAATTACTAGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58755021 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGTTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58755086 AG
131 AG
* *
58755088 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58755153 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGTTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58755218 AG
131 AG
*
58755220 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58755285 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATTTTCGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58755350 AG
131 AG
* *
58755352 GGAGATAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGACTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58755417 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTACTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58755482 AG
131 AG
* *
58755484 GGAGATAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGAAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * *
58755549 AATATACTCCACTATAACCACAGGGAGGTAAAATCCTCTATCTTCGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58755614 AG
131 AG
*
58755616 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCTGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58755681 AATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58755746 AG
131 AG
* * * * *
58755748 GGAGATAAGCTCTGAAATCTTCAATCCATTCTATTGTTGTCCAAGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
*
58755813 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58755878 AG
131 AG
* *
58755880 GGAGATAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCTAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58755945 AATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGATCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58756010 AG
131 AG
* * *
58756012 GGAGATAAGATCTAAAATCTTCAATCTATTCCACTGTTGTTCAGGGAAGTAGAATTACTGGCTTT
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * *
58756077 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATGTTCGATCTGCTCCACTACAGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58756142 AG
131 AG
* *
58756144 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58756209 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGTTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58756274 AG
131 AG
*
58756276 GGAGATAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
58756341 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGATCCACTATTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58756406 AG
131 AG
* * *
58756408 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTTCAGGAAAGTAGAATTACTGGCTTT
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * *
58756473 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACAGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
58756538 AG
131 AG
* * * *
58756540 GGAAATAAGATCTGAAATCTTTAATCTATTCCACTATTG-CCGAGGGAAGTAGAATTACTAGCTT
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCC-AGGGAAGTAGAATTACTGGCTT
*
58756604 CAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCT
65 CAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCT
58756669 TAG
130 TAG
*
58756672 GGAGATAAGATATGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * *
58756737 AATGTACTCCATTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTG
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTG
58756788 ATTCGTTGTC
Statistics
Matches: 2825, Mismatches: 188, Indels: 14
0.93 0.06 0.00
Matches are distributed among these distances:
131 3 0.00
132 2814 1.00
133 8 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (132 bp):
GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
AG
Found at i:58760748 original size:24 final size:24
Alignment explanation
Indices: 58760720--58760765 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
58760710 ATCATTTTTT
* *
58760720 GCTGCTCATTCATTTGCTTTTGAA
1 GCTGCTCATGCATTTCCTTTTGAA
*
58760744 GCTGCTCCTGCATTTCCTTTTG
1 GCTGCTCATGCATTTCCTTTTG
58760766 GGATTGTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (24 bp):
GCTGCTCATGCATTTCCTTTTGAA
Found at i:58763658 original size:22 final size:21
Alignment explanation
Indices: 58763623--58763737 Score: 71
Period size: 19 Copynumber: 5.7 Consensus size: 21
58763613 AACGGGTATC
* *
58763623 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
58763644 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
58763667 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
58763686 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
58763705 TATATATGATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
58763724 TGCATATCATATCT
1 TACAAATCATATCT
58763738 AAGATTGCAT
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
19 51 0.64
21 4 0.05
22 15 0.19
23 10 0.12
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:58763666 original size:23 final size:22
Alignment explanation
Indices: 58763623--58763680 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
58763613 AACGGGTATC
* *
58763623 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
58763644 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
58763667 TGCATATCATATCT
1 TACAAATCATATCT
58763681 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:58763683 original size:19 final size:19
Alignment explanation
Indices: 58763659--58763750 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
58763649 AATCATATCT
58763659 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
58763678 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
** *
58763697 TCTAAGATTATATATGATA
1 TCTAAGATTGCATATCATA
58763716 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
58763735 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
58763751 CCTGAAGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:58763717 original size:38 final size:38
Alignment explanation
Indices: 58763636--58763750 Score: 131
Period size: 38 Copynumber: 2.9 Consensus size: 38
58763626 AAATTAAATC
* *
58763636 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTACATATCATA
* * *
58763678 TCTAAGATTATATATCATATCTAAGATTATATATGATA
1 TCTAAGATTACATATCATATCTAAGATTACATATCATA
* *
58763716 TCTAAGATTGCATATCATATCTAAGATTGCATATC
1 TCTAAGATTACATATCATATCTAAGATTACATATC
58763751 CCTGAAGATT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
38 46 0.73
41 7 0.11
42 10 0.16
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTACATATCATA
Found at i:58764860 original size:19 final size:20
Alignment explanation
Indices: 58764838--58764890 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
58764828 TAATTATTTC
58764838 AAATATCATTATTTTTA-GT-
1 AAATAT-ATTATTTTTATGTG
58764857 AAATATATT-TTTTATATGTG
1 AAATATATTATTTT-TATGTG
58764877 AAATAT-TTATTTTT
1 AAATATATTATTTTT
58764891 CTTCCATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 4 0.13
18 5 0.17
19 11 0.37
20 10 0.33
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.57
Consensus pattern (20 bp):
AAATATATTATTTTTATGTG
Found at i:58765106 original size:103 final size:103
Alignment explanation
Indices: 58764958--58765150 Score: 275
Period size: 106 Copynumber: 1.9 Consensus size: 103
58764948 GAAATAATTA
* *
58764958 TTTGAAATATTTCACATATAAAAATAATAATATTTGAAATTATTA-TT-TTTTATAATATTAGAA
1 TTTGAAATATTTCACATATAAAAATAATAATATTTGAAATAATTATTTATTTTATAATATTAAAA
* *
58765021 TTTATCATACCCGCAATATAGGTGAAAATATAATGATC
66 TTTAACATACCCACAATATAGGTGAAAATATAATGATC
*
58765059 TTTGAAATAATTT-ACATATAAAATAATAATGATATTTGAAATAATTATTTGATTTTATAATATT
1 TTTGAAAT-ATTTCACATAT-AAA-AATAATAATATTTGAAATAATTATTT-ATTTTATAATATT
*
58765123 AAAATTTAACATACCCACAATGTAGGTG
62 AAAATTTAACATACCCACAATATAGGTG
58765151 GAAAGAATAA
Statistics
Matches: 80, Mismatches: 6, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
101 14 0.17
102 7 0.09
103 21 0.26
104 2 0.03
106 36 0.45
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.40
Consensus pattern (103 bp):
TTTGAAATATTTCACATATAAAAATAATAATATTTGAAATAATTATTTATTTTATAATATTAAAA
TTTAACATACCCACAATATAGGTGAAAATATAATGATC
Found at i:58773007 original size:20 final size:20
Alignment explanation
Indices: 58772984--58773022 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
58772974 ATGAATAAAT
* *
58772984 AATTTTTTAAATATGTTTTC
1 AATTTTTAAAATATATTTTC
58773004 AATTTTTAAAATATATTTT
1 AATTTTTAAAATATATTTT
58773023 TAAGTAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
AATTTTTAAAATATATTTTC
Found at i:58773317 original size:21 final size:21
Alignment explanation
Indices: 58773291--58773332 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
58773281 GAACATTCAT
58773291 CCAATTATATATGCTAATAAG
1 CCAATTATATATGCTAATAAG
58773312 CCAATTATATATGCTAATAAG
1 CCAATTATATATGCTAATAAG
58773333 TATCATTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (21 bp):
CCAATTATATATGCTAATAAG
Found at i:58791125 original size:68 final size:67
Alignment explanation
Indices: 58791013--58791144 Score: 221
Period size: 68 Copynumber: 2.0 Consensus size: 67
58791003 AAGCATATAT
58791013 TTAGCCAATTTGTTTTAGGGTTCATAAGAAATTAGGGATCTTTTTAGTTTGTTTGATTTTTGTGT
1 TTAGCCAATTTGTTTTAGGGTTCATAAGAAATTAGGGATCTTTTTAGTTTGTTTGA-TTTTGTGT
58791078 CAG
65 CAG
* *
58791081 TTAGCCAATTTGTTTTTGGGTTCATAAGAAATT-GGAGATTTTTTTAGTTTGTTTGATTTTGTGT
1 TTAGCCAATTTGTTTTAGGGTTCATAAGAAATTAGG-GATCTTTTTAGTTTGTTTGATTTTGTGT
58791145 TGGCTGGAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
67 10 0.16
68 51 0.84
ACGTcount: A:0.21, C:0.06, G:0.22, T:0.51
Consensus pattern (67 bp):
TTAGCCAATTTGTTTTAGGGTTCATAAGAAATTAGGGATCTTTTTAGTTTGTTTGATTTTGTGTC
AG
Found at i:58798243 original size:24 final size:25
Alignment explanation
Indices: 58798216--58798271 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 25
58798206 TTTAAGTATA
*
58798216 AATTTTTTTTAAAAATATAT-TTTT
1 AATTTTTTTGAAAAATATATATTTT
* *
58798240 AA-TTTATTGAAAAATATTTATTTT
1 AATTTTTTTGAAAAATATATATTTT
*
58798264 AATGTTTT
1 AATTTTTT
58798272 AAGTGTATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 14 0.56
24 8 0.32
25 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.59
Consensus pattern (25 bp):
AATTTTTTTGAAAAATATATATTTT
Found at i:58798752 original size:6 final size:6
Alignment explanation
Indices: 58798741--58798768 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
58798731 TGGGTTATTA
58798741 GGTTAG GGTTAG GGTTAG GGTTAG GGTT
1 GGTTAG GGTTAG GGTTAG GGTTAG GGTT
58798769 TTGGTGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.50, T:0.36
Consensus pattern (6 bp):
GGTTAG
Found at i:58799000 original size:96 final size:96
Alignment explanation
Indices: 58798892--58799121 Score: 286
Period size: 96 Copynumber: 2.4 Consensus size: 96
58798882 TGTTTATTGT
*
58798892 TTTTTAA-TAAAAAT-AAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATTAAAAATTAT
1 TTTTTAAGTAAAAATCAAA-TAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAATT-T
*
58798955 TTA-AAAATCAGATAAGGGTTTAGAGTTAAGGG
64 TTATAAAATCAGATAAGGGTTTAGAGTTAAGGA
* * * **
58798987 TTTTTAAGGAAAAATCAAATAAACTAGGGTTCAGGGTTACTTGAGTAAATTAATTATCAATTTTT
1 TTTTTAAGTAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAATTTTT
** * * *
58799052 ATAAAATTTGATTAGGGTTTAGGGTTTAGGA
66 ATAAAATCAGATAAGGGTTTAGAGTTAAGGA
* *
58799083 TTTTTAAGTAAAAACTCAAATAAATTAGAGTTTCGGGTT
1 TTTTTAAGTAAAAA-TCAAATAAATTAGGGTTTAGGGTT
58799122 TAGGGTTACT
Statistics
Matches: 114, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
95 11 0.10
96 80 0.70
97 23 0.20
ACGTcount: A:0.39, C:0.04, G:0.18, T:0.38
Consensus pattern (96 bp):
TTTTTAAGTAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAATTTTT
ATAAAATCAGATAAGGGTTTAGAGTTAAGGA
Found at i:58799152 original size:16 final size:16
Alignment explanation
Indices: 58799131--58799183 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
58799121 TTAGGGTTAC
58799131 TTAATTAAATTATTTG
1 TTAATTAAATTATTTG
*
58799147 TTAATTTAAAGTTA---C
1 TTAA-TTAAA-TTATTTG
58799162 TTAATTAAATTATTTG
1 TTAATTAAATTATTTG
58799178 TTAATT
1 TTAATT
58799184 TAAAGAAGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
13 3 0.10
14 5 0.17
15 4 0.13
16 10 0.33
17 5 0.17
18 3 0.10
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.55
Consensus pattern (16 bp):
TTAATTAAATTATTTG
Found at i:58799163 original size:31 final size:31
Alignment explanation
Indices: 58799126--58799188 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
58799116 CGGGTTTAGG
58799126 GTTACTTAATTAAATTATTTGTTAATTTAAA
1 GTTACTTAATTAAATTATTTGTTAATTTAAA
58799157 GTTACTTAATTAAATTATTTGTTAATTTAAA
1 GTTACTTAATTAAATTATTTGTTAATTTAAA
58799188 G
1 G
58799189 AAGCTCCCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (31 bp):
GTTACTTAATTAAATTATTTGTTAATTTAAA
Found at i:58799342 original size:126 final size:126
Alignment explanation
Indices: 58799185--58799601 Score: 726
Period size: 126 Copynumber: 3.3 Consensus size: 126
58799175 TTGTTAATTT
58799185 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
* * *
58799250 GTTTTTGAGCAAATAGTGTCAAAAACGCTTTAAGCAAGATTCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTG
* *
58799311 AAAGAAGCTCCCACGTGGACGTGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCAAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
* *
58799376 GTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAAGGTGCTTTGTCAGTAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTG
* *
58799437 AAAGAAGCTCCCACGTGGACACGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAT
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
*
58799502 GTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTG
* *
58799563 GAAGAAGCTCCCACGTGGACGCGCTTTTTCTACAGTAGC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGC
58799602 GCATGTTTGT
Statistics
Matches: 274, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 274 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
GTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTG
Found at i:58803319 original size:18 final size:18
Alignment explanation
Indices: 58803278--58803320 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
58803268 GGCTAGAAAA
* * *
58803278 AGGAGACATATAAGGGTT
1 AGGATACATAAAAGGGCT
*
58803296 ATGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
58803314 AGGATAC
1 AGGATAC
58803321 GCACCTGGCA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:58805000 original size:22 final size:22
Alignment explanation
Indices: 58804937--58805002 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
58804927 TGCACTAATG
* *
58804937 AACAGAGAGCACTAAAATGCTA
1 AACAGAGAGCACTGAAGTGCTA
* * * *
58804959 TACAGAGACCACAGATGTGCTA
1 AACAGAGAGCACTGAAGTGCTA
*
58804981 AACAGAGAGCACTGACGTGCTA
1 AACAGAGAGCACTGAAGTGCTA
58805003 TATATCGGAG
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.41, C:0.21, G:0.23, T:0.15
Consensus pattern (22 bp):
AACAGAGAGCACTGAAGTGCTA
Found at i:58805407 original size:15 final size:15
Alignment explanation
Indices: 58805387--58805416 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58805377 AATATAGACA
*
58805387 TTTAAATAAAATAAT
1 TTTAAAAAAAATAAT
58805402 TTTAAAAAAAATAAT
1 TTTAAAAAAAATAAT
58805417 CTTGTAGTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TTTAAAAAAAATAAT
Found at i:58806081 original size:11 final size:11
Alignment explanation
Indices: 58806065--58806090 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
58806055 TCTTTCTTTC
58806065 TTTCTCCCCTG
1 TTTCTCCCCTG
58806076 TTTCTCCCCTG
1 TTTCTCCCCTG
58806087 TTTC
1 TTTC
58806091 GATTATGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.50
Consensus pattern (11 bp):
TTTCTCCCCTG
Found at i:58811668 original size:25 final size:25
Alignment explanation
Indices: 58811640--58811724 Score: 118
Period size: 25 Copynumber: 3.4 Consensus size: 25
58811630 TTATACAGAA
**
58811640 CAGAGAGCACTGACGTGCT-ATATAT
1 CAGAGAGCACCAACGTGCTAATA-AT
58811665 CAGAGAGCACCAACGTGCTAATAAT
1 CAGAGAGCACCAACGTGCTAATAAT
* *
58811690 TAGAGAGCACCAATGTGCTAATAAT
1 CAGAGAGCACCAACGTGCTAATAAT
58811715 CAGAGAGCAC
1 CAGAGAGCAC
58811725 GCTAAAGTTC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
25 51 0.94
26 3 0.06
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (25 bp):
CAGAGAGCACCAACGTGCTAATAAT
Found at i:58812026 original size:5 final size:5
Alignment explanation
Indices: 58812012--58812044 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
58812002 TTCCATAATC
*
58812012 TTTTA TTTTA CTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
58812045 CTAAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:58815352 original size:41 final size:41
Alignment explanation
Indices: 58815290--58815395 Score: 158
Period size: 41 Copynumber: 2.6 Consensus size: 41
58815280 AATGAGATAA
* * *
58815290 TTCAAACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
* *
58815331 TTCAGACTTTACGTCTAGCAGGATTGACGTCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
*
58815372 TTCGGACTTTACGTCTAGCAGGCT
1 TTCAGACTTTACGTCTAGCAGGCT
58815396 AATTGCCAGT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
Found at i:58822218 original size:126 final size:126
Alignment explanation
Indices: 58822039--58822326 Score: 477
Period size: 126 Copynumber: 2.3 Consensus size: 126
58822029 AATTTAAAAT
* * * *
58822039 AGCTTCCACATGGACGCTCTTTTGTTACAGTAACTCTTGAAAAAATAATTTCGAGAAGACGTTTC
1 AGCTCCCACGTGGACGCGCTTTTGTTACAGTAGCTCTTGAAAAAATAATTTCGAGAAGACGTTTC
58822104 TGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
66 TGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
* *
58822165 AGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGACGTTTC
1 AGCTCCCACGTGGACGCGCTTTTGTTACAGTAGCTCTTGAAAAAATAATTTCGAGAAGACGTTTC
* *
58822230 TGAGCAAATAGTGTCAAAAATGCTTTAAGCAGGATGCTTTGTCAGTAAAAGTACTGAAAGA
66 TGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
** *
58822291 AGCTCCTTCGTGGACGCGCTTTGGTTACAGTAGCTC
1 AGCTCCCACGTGGACGCGCTTTTGTTACAGTAGCTC
58822327 CTGTTTGGCC
Statistics
Matches: 150, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 150 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (126 bp):
AGCTCCCACGTGGACGCGCTTTTGTTACAGTAGCTCTTGAAAAAATAATTTCGAGAAGACGTTTC
TGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
Found at i:58825658 original size:21 final size:21
Alignment explanation
Indices: 58825625--58825681 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
58825615 CAGCTTCTGA
* *
58825625 CGGGGGTTATGGTTGCTCCGG
1 CGGGGATTCTGGTTGCTCCGG
* *
58825646 CGGGGATTCTGGTTCCTCTGG
1 CGGGGATTCTGGTTGCTCCGG
58825667 CAGGGGA-TCTGGTTG
1 C-GGGGATTCTGGTTG
58825682 TCGATGTTGG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 25 0.83
22 5 0.17
ACGTcount: A:0.07, C:0.19, G:0.44, T:0.30
Consensus pattern (21 bp):
CGGGGATTCTGGTTGCTCCGG
Found at i:58827825 original size:10 final size:10
Alignment explanation
Indices: 58827787--58827829 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
58827777 TAAGAGGAAC
*
58827787 TTGAGAGGAAT
1 TTGAGA-GAAA
58827798 TTGAGAGAATA
1 TTGAGAGAA-A
58827809 TTGGAGAGAAA
1 TT-GAGAGAAA
58827820 TTGAGAGAAA
1 TTGAGAGAAA
58827830 GGATTTAGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 11 0.38
11 11 0.38
12 7 0.24
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.23
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:58850237 original size:29 final size:30
Alignment explanation
Indices: 58850202--58850282 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 30
58850192 TAATTCAAGT
*
58850202 TTCATGTAT-ATAATTG-TATTAAATCAAAA
1 TTCATGTATCAT-ATTGATATTAAAACAAAA
58850231 TTCATGTATCATATTGCATATTAAAACAAAA
1 TTCATGTATCATATTG-ATATTAAAACAAAA
* * * *
58850262 TTTATATATAATTTTGATATT
1 TTCATGTATCATATTGATATT
58850283 TATCCTTATA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 13 0.30
30 7 0.16
31 24 0.55
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.44
Consensus pattern (30 bp):
TTCATGTATCATATTGATATTAAAACAAAA
Found at i:58855077 original size:19 final size:19
Alignment explanation
Indices: 58855055--58855092 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
58855045 TGTTGTTTTC
*
58855055 TCACAATTTTGTTGCTATT
1 TCACAATTATGTTGCTATT
*
58855074 TCACTATTATGTTGCTATT
1 TCACAATTATGTTGCTATT
58855093 ATTTTGTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.16, G:0.11, T:0.53
Consensus pattern (19 bp):
TCACAATTATGTTGCTATT
Found at i:58857815 original size:34 final size:35
Alignment explanation
Indices: 58857757--58857823 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
58857747 CAAACACCAG
58857757 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
58857792 AAAATATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
58857824 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:58863139 original size:21 final size:22
Alignment explanation
Indices: 58863104--58863144 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
58863094 TTTATTTTTA
*
58863104 TTTTATTTTATGAATCTTATAG
1 TTTTATTTTAAGAATCTTATAG
*
58863126 TTTT-TTTTAAGAATTTTAT
1 TTTTATTTTAAGAATCTTAT
58863145 GAAAATTTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (22 bp):
TTTTATTTTAAGAATCTTATAG
Found at i:58863611 original size:13 final size:13
Alignment explanation
Indices: 58863593--58863656 Score: 60
Period size: 13 Copynumber: 4.9 Consensus size: 13
58863583 AGTTCTTCAT
58863593 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
58863606 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
58863619 TGC-TGTGAAAAAG
1 TGCTTTTG-AAAAG
*
58863632 TACTTTT-AAGAAG
1 TGCTTTTGAA-AAG
*
58863645 TACTTTTGAAAA
1 TGCTTTTGAAAA
58863657 ATTTGAGTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
12 5 0.12
13 33 0.79
14 4 0.10
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:58863656 original size:26 final size:26
Alignment explanation
Indices: 58863595--58863656 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
58863585 TTCTTCATTG
* * *
58863595 CTTTTGAAAAGTGCTTTTGAGAAGTG
1 CTTTTGAAAAGTACTTTTAAGAAGTA
*
58863621 C-TGTGAAAAAGTACTTTTAAGAAGTA
1 CTTTTG-AAAAGTACTTTTAAGAAGTA
58863647 CTTTTGAAAA
1 CTTTTGAAAA
58863657 ATTTGAGTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
25 3 0.10
26 23 0.79
27 3 0.10
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.35
Consensus pattern (26 bp):
CTTTTGAAAAGTACTTTTAAGAAGTA
Found at i:58865951 original size:27 final size:27
Alignment explanation
Indices: 58865921--58865972 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
58865911 AAGACAAGGA
* *
58865921 GAGAAAGAAATATTGAAACAAGAAAGC
1 GAGAAAGAAAGATTAAAACAAGAAAGC
*
58865948 GAGAAAGGAAGATTAAAACAAGAAA
1 GAGAAAGAAAGATTAAAACAAGAAA
58865973 AGAAACCATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.62, C:0.06, G:0.23, T:0.10
Consensus pattern (27 bp):
GAGAAAGAAAGATTAAAACAAGAAAGC
Found at i:58867244 original size:24 final size:24
Alignment explanation
Indices: 58867204--58867250 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
58867194 AAAGGAAAAT
*
58867204 AAGAGAAAGTGATGGAAAATGTTG
1 AAGAGAAAGTGAAGGAAAATGTTG
*
58867228 AAGAGAAAG-GAAAGGAAAGTGTT
1 AAGAGAAAGTG-AAGGAAAATGTT
58867251 ATAAATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.49, C:0.00, G:0.34, T:0.17
Consensus pattern (24 bp):
AAGAGAAAGTGAAGGAAAATGTTG
Found at i:58871152 original size:19 final size:19
Alignment explanation
Indices: 58871130--58871181 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
58871120 TTTTTTCATC
*
58871130 AAAATAATTAAAAAATCT-T
1 AAAAT-ATTAAAAAAACTAT
*
58871149 AAAATTATAAAAAAAACTAT
1 AAAA-TATTAAAAAAACTAT
*
58871169 TAAATATTAAAAA
1 AAAATATTAAAAA
58871182 TATGAAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 22 0.81
20 5 0.19
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAATATTAAAAAAACTAT
Found at i:58871216 original size:9 final size:9
Alignment explanation
Indices: 58871202--58871242 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
58871192 GATATCAACT
58871202 TATAAAAAA
1 TATAAAAAA
* *
58871211 TATAAATAC
1 TATAAAAAA
58871220 TATAAAAAA
1 TATAAAAAA
*
58871229 TATTAAAAA
1 TATAAAAAA
58871238 TATAA
1 TATAA
58871243 TAATTTATAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (9 bp):
TATAAAAAA
Found at i:58871292 original size:21 final size:19
Alignment explanation
Indices: 58871268--58871314 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
58871258 CATAAAATTA
*
58871268 ATAAAACATATTTAGAATTTT
1 ATAAAACATA-TTA-AATTCT
58871289 ATAAAAACATATTAAATTCT
1 AT-AAAACATATTAAATTCT
58871309 ATAAAA
1 ATAAAA
58871315 ATCATAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 4 0.17
20 7 0.29
21 5 0.21
22 8 0.33
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.36
Consensus pattern (19 bp):
ATAAAACATATTAAATTCT
Found at i:58871320 original size:21 final size:22
Alignment explanation
Indices: 58871270--58871320 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
58871260 TAAAATTAAT
*
58871270 AAAACATATTTAGAATTTTATA
1 AAAACATATTTAGAATTCTATA
58871292 AAAACATA-TTA-AATTCTATA
1 AAAACATATTTAGAATTCTATA
58871312 AAAATCATA
1 AAAA-CATA
58871321 AAAGTATTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 12 0.44
21 7 0.26
22 8 0.30
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (22 bp):
AAAACATATTTAGAATTCTATA
Found at i:58871892 original size:21 final size:20
Alignment explanation
Indices: 58871868--58871908 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
58871858 TTAAGAAATC
58871868 TAGTATGTTTTATTAATTTTA
1 TAGTATGTTTTA-TAATTTTA
* *
58871889 TAGTTTTTTTTATAATTTTA
1 TAGTATGTTTTATAATTTTA
58871909 ATAAGATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (20 bp):
TAGTATGTTTTATAATTTTA
Found at i:58872660 original size:2 final size:2
Alignment explanation
Indices: 58872653--58872690 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
58872643 CATGTAATAA
*
58872653 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
58872691 GCAGACACTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.50, G:0.03, T:0.00
Consensus pattern (2 bp):
AC
Found at i:58872698 original size:8 final size:8
Alignment explanation
Indices: 58872653--58872698 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
58872643 CATGTAATAA
*
58872653 ACACACAC
1 ACACACGC
*
58872661 ACACACAC
1 ACACACGC
*
58872669 ACACACAC
1 ACACACGC
58872677 ACACACGC
1 ACACACGC
58872685 ACACACGC
1 ACACACGC
*
58872693 AGACAC
1 ACACAC
58872699 TCTCTCTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.46, C:0.48, G:0.07, T:0.00
Consensus pattern (8 bp):
ACACACGC
Found at i:58883382 original size:13 final size:13
Alignment explanation
Indices: 58883364--58883389 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58883354 TAACTTCCTT
58883364 AACTGTTAACTGC
1 AACTGTTAACTGC
58883377 AACTGTTAACTGC
1 AACTGTTAACTGC
58883390 TATTATTCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
AACTGTTAACTGC
Found at i:58887858 original size:13 final size:13
Alignment explanation
Indices: 58887840--58887865 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58887830 TAACTTCCTT
58887840 AACTGTTAACTGC
1 AACTGTTAACTGC
58887853 AACTGTTAACTGC
1 AACTGTTAACTGC
58887866 TATTATTCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
AACTGTTAACTGC
Found at i:58892751 original size:16 final size:16
Alignment explanation
Indices: 58892723--58892768 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
58892713 AATAATAGCC
58892723 TTATATATAAAATATA
1 TTATATATAAAATATA
58892739 TTATCATAT-AAATAT-
1 TTAT-ATATAAAATATA
58892754 TTGATATA-AAAATAT
1 TT-ATATATAAAATAT
58892769 TCAAAAGGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 11 0.41
16 12 0.44
17 4 0.15
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (16 bp):
TTATATATAAAATATA
Found at i:58893468 original size:9 final size:9
Alignment explanation
Indices: 58893454--58893478 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
58893444 ATTCAGGCAT
58893454 AAATAAAAA
1 AAATAAAAA
58893463 AAATAAAAA
1 AAATAAAAA
58893472 AAATAAA
1 AAATAAA
58893479 CCCTAAACGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAATAAAAA
Found at i:58912624 original size:2 final size:2
Alignment explanation
Indices: 58912617--58912645 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
58912607 AGACAAAGGC
58912617 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
58912646 GTTATCACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:58914566 original size:6 final size:6
Alignment explanation
Indices: 58914555--58914611 Score: 114
Period size: 6 Copynumber: 9.5 Consensus size: 6
58914545 TTAAATTCCT
58914555 CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC
1 CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC
58914603 CTTCTC CTT
1 CTTCTC CTT
58914612 TTTCTACTCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 51 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (6 bp):
CTTCTC
Found at i:58917345 original size:17 final size:17
Alignment explanation
Indices: 58917323--58917358 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
58917313 ATTTTTTTTC
58917323 ATTTT-AAAAATACAATT
1 ATTTTAAAAAATA-AATT
58917340 ATTTTAAAAAATAAATT
1 ATTTTAAAAAATAAATT
58917357 AT
1 AT
58917359 AATATATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
ATTTTAAAAAATAAATT
Found at i:58917615 original size:24 final size:24
Alignment explanation
Indices: 58917583--58917633 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
58917573 CCGTCGTATG
58917583 ATTCATTTACCCTATTATGGTTTA
1 ATTCATTTACCCTATTATGGTTTA
58917607 ATTCATTTACCCTATTATGGTTTA
1 ATTCATTTACCCTATTATGGTTTA
58917631 ATT
1 ATT
58917634 TCCAAATGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.25, C:0.16, G:0.08, T:0.51
Consensus pattern (24 bp):
ATTCATTTACCCTATTATGGTTTA
Found at i:58919417 original size:10 final size:9
Alignment explanation
Indices: 58919393--58919435 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
58919383 TAAAAATAAA
58919393 AAAATATTTT
1 AAAAT-TTTT
58919403 AAAAATATTTT
1 -AAAAT-TTTT
*
58919414 AAAATTTTA
1 AAAATTTTT
58919423 AAAATTTTT
1 AAAATTTTT
58919432 AAAA
1 AAAA
58919436 AATATATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 15 0.50
10 5 0.17
11 10 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
AAAATTTTT
Found at i:58919420 original size:19 final size:18
Alignment explanation
Indices: 58919398--58919435 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 18
58919388 ATAAAAAAAT
58919398 ATTTTAAAAATATTTTAAA
1 ATTTTAAAAAT-TTTTAAA
58919417 ATTTTAAAAATTTTTAAA
1 ATTTTAAAAATTTTTAAA
58919435 A
1 A
58919436 AATATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTTTAAAAATTTTTAAA
Found at i:58919438 original size:11 final size:11
Alignment explanation
Indices: 58919392--58919436 Score: 62
Period size: 10 Copynumber: 4.5 Consensus size: 11
58919382 TTAAAAATAA
58919392 AAAAATATTTT
1 AAAAATATTTT
58919403 AAAAATATTTT
1 AAAAATATTTT
58919414 --AAA-ATTTT
1 AAAAATATTTT
58919422 AAAAAT-TTTT
1 AAAAATATTTT
58919432 AAAAA
1 AAAAA
58919437 ATATATATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 5 0.16
9 3 0.10
10 12 0.39
11 11 0.35
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:58919440 original size:30 final size:30
Alignment explanation
Indices: 58919378--58919436 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
58919368 ACCAAAAATT
58919378 TATTTTAAAAATAAAAAAATATTTTAAAAA
1 TATTTTAAAAATAAAAAAATATTTTAAAAA
* **
58919408 TATTTTAAAATTTTAAAAAT-TTTTAAAAA
1 TATTTTAAAAATAAAAAAATATTTTAAAAA
58919437 ATATATATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (30 bp):
TATTTTAAAAATAAAAAAATATTTTAAAAA
Found at i:58920380 original size:55 final size:55
Alignment explanation
Indices: 58920313--58920420 Score: 162
Period size: 55 Copynumber: 2.0 Consensus size: 55
58920303 AATGCGAAAG
* *
58920313 TCACATAATTGGGTGCTCAACCACCGGAATGAAATATACGAATTAGTGCATTGAA
1 TCACATAATTGGGTGCTCAACCACCAGAATGAAATATACGAATGAGTGCATTGAA
* * * *
58920368 TCACATCATTGGGTGCTCAACTACTAGAATGAAATATACGAATGGGTGCATTG
1 TCACATAATTGGGTGCTCAACCACCAGAATGAAATATACGAATGAGTGCATTG
58920421 GATCTGTCAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (55 bp):
TCACATAATTGGGTGCTCAACCACCAGAATGAAATATACGAATGAGTGCATTGAA
Found at i:58924810 original size:16 final size:16
Alignment explanation
Indices: 58924789--58924822 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
58924779 TTTATTTTAA
58924789 TATTTATATTTATATT
1 TATTTATATTTATATT
* *
58924805 TATTTATTTTTATCTT
1 TATTTATATTTATATT
58924821 TA
1 TA
58924823 AATTTGACGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTATATTTATATT
Found at i:58930639 original size:20 final size:23
Alignment explanation
Indices: 58930604--58930644 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
58930594 GTGACGGAGC
58930604 GATCATCTTGCTTGAA-AGCATT
1 GATCATCTTGCTTGAAGAGCATT
58930626 GATC-TCTT-CTTGAAGAGCA
1 GATCATCTTGCTTGAAGAGCA
58930645 GAAATGGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (23 bp):
GATCATCTTGCTTGAAGAGCATT
Found at i:58934411 original size:28 final size:28
Alignment explanation
Indices: 58934358--58934411 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
58934348 CAACTTCCCT
**
58934358 TTGAGTTTTTCTTTTTTAAGAATTTTTC
1 TTGAGTTTTTCTTTTAGAAGAATTTTTC
*
58934386 TTGAG-TTTTCTTTTAGAAGAGTTTTT
1 TTGAGTTTTTCTTTTAGAAGAATTTTT
58934412 ACAATCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.19, C:0.06, G:0.15, T:0.61
Consensus pattern (28 bp):
TTGAGTTTTTCTTTTAGAAGAATTTTTC
Found at i:58936381 original size:45 final size:45
Alignment explanation
Indices: 58936326--58936415 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
58936316 ATTTAGACCT
*
58936326 TAATTATCCTCTTAAATAGTTGTATTATGATGAATTCAATTTACA
1 TAATTATCCTCTTAAAGAGTTGTATTATGATGAATTCAATTTACA
58936371 TAATTATCCTCTTAAAGAGTTGTATTATGATGAATTCAATTTACA
1 TAATTATCCTCTTAAAGAGTTGTATTATGATGAATTCAATTTACA
58936416 AACTTTTTGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.43
Consensus pattern (45 bp):
TAATTATCCTCTTAAAGAGTTGTATTATGATGAATTCAATTTACA
Found at i:58936590 original size:14 final size:14
Alignment explanation
Indices: 58936571--58936600 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
58936561 ACATTGAAAA
*
58936571 AAAGAATCTATTTG
1 AAAGAATCTACTTG
58936585 AAAGAATCTACTTG
1 AAAGAATCTACTTG
58936599 AA
1 AA
58936601 TTTGTCTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.30
Consensus pattern (14 bp):
AAAGAATCTACTTG
Found at i:58937828 original size:21 final size:21
Alignment explanation
Indices: 58937804--58937844 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
58937794 TCTACTCTAC
* *
58937804 TTCCATCGCTGCTGCCTCTGT
1 TTCCATCACTGCTGCATCTGT
*
58937825 TTCCTTCACTGCTGCATCTG
1 TTCCATCACTGCTGCATCTG
58937845 CTTTAAGTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.37, G:0.17, T:0.39
Consensus pattern (21 bp):
TTCCATCACTGCTGCATCTGT
Found at i:58941296 original size:17 final size:17
Alignment explanation
Indices: 58941274--58941308 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
58941264 CTTTATATCC
58941274 TTCAAATACGAACTTGA
1 TTCAAATACGAACTTGA
*
58941291 TTCAAATATGAACTTGA
1 TTCAAATACGAACTTGA
58941308 T
1 T
58941309 AAGAAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (17 bp):
TTCAAATACGAACTTGA
Found at i:58942593 original size:18 final size:18
Alignment explanation
Indices: 58942564--58942621 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
58942554 TTGACTTTTA
*
58942564 ATATTAATATATGATATG
1 ATATAAATATATGATATG
*
58942582 ATATAAGA-ATATGGTATTG
1 ATATAA-ATATATGATA-TG
58942601 A-ATAAATATATGATATG
1 ATATAAATATATGATATG
58942618 ATAT
1 ATAT
58942622 TGAATAAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
17 4 0.12
18 25 0.76
19 4 0.12
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.40
Consensus pattern (18 bp):
ATATAAATATATGATATG
Found at i:58943299 original size:30 final size:29
Alignment explanation
Indices: 58943265--58943341 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
58943255 TTCCTGTAAA
* *
58943265 CCTTAAACCCTAAACCCTAAGCCCCCTGAC
1 CCTTAAACCTTAAACCCTAAG-CCACTGAC
* *
58943295 CCTTAAACCTTAAACCTTAAGCCATTGAC
1 CCTTAAACCTTAAACCCTAAGCCACTGAC
*
58943324 CCCTAAACCTTAAACCCT
1 CCTTAAACCTTAAACCCT
58943342 TAACAAACAC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 22 0.54
30 19 0.46
ACGTcount: A:0.32, C:0.40, G:0.05, T:0.22
Consensus pattern (29 bp):
CCTTAAACCTTAAACCCTAAGCCACTGAC
Found at i:58943333 original size:29 final size:30
Alignment explanation
Indices: 58943268--58943344 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 30
58943258 CTGTAAACCT
* * * *
58943268 TAAACCCTAAACCCTAAGCCCCCTGACCCT
1 TAAACCTTAAACCTTAAGCCCACTGACCCC
*
58943298 TAAACCTTAAACCTTAAG-CCATTGACCCC
1 TAAACCTTAAACCTTAAGCCCACTGACCCC
58943327 TAAACCTTAAACCCTTAA
1 TAAACCTTAAA-CCTTAA
58943345 CAAACACCCT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
29 19 0.46
30 22 0.54
ACGTcount: A:0.35, C:0.38, G:0.05, T:0.22
Consensus pattern (30 bp):
TAAACCTTAAACCTTAAGCCCACTGACCCC
Found at i:58943497 original size:7 final size:7
Alignment explanation
Indices: 58943495--58943561 Score: 62
Period size: 7 Copynumber: 9.6 Consensus size: 7
58943485 TATTAAACTT
58943495 TAAACCC
1 TAAACCC
58943502 TAAACCC
1 TAAACCC
**
58943509 TAAACAT
1 TAAACCC
*
58943516 TAAACTC
1 TAAACCC
58943523 TAAACCC
1 TAAACCC
**
58943530 TAAATAC
1 TAAACCC
* *
58943537 TAAATCA
1 TAAACCC
58943544 TAAACCC
1 TAAACCC
*
58943551 TAAACAC
1 TAAACCC
58943558 TAAA
1 TAAA
58943562 AGTAATTAAA
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
7 48 1.00
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:58943512 original size:21 final size:21
Alignment explanation
Indices: 58943488--58943555 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
58943478 TCTTAAATAT
58943488 TAAACTTTAAACCCTAAACCC
1 TAAACTTTAAACCCTAAACCC
* *
58943509 TAAACATTAAACTCTAAACCC
1 TAAACTTTAAACCCTAAACCC
* * *
58943530 TAAA-TACTAAATCATAAACCC
1 TAAACT-TTAAACCCTAAACCC
58943551 TAAAC
1 TAAAC
58943556 ACTAAAAGTA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.24
Consensus pattern (21 bp):
TAAACTTTAAACCCTAAACCC
Found at i:58943539 original size:28 final size:28
Alignment explanation
Indices: 58943481--58943561 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
58943471 AAAATAATCT
* * *
58943481 TAAATATTAAACTTTAAACCCTAAACCC
1 TAAACATTAAACTCTAAACCCTAAACAC
*
58943509 TAAACATTAAACTCTAAACCCTAAATAC
1 TAAACATTAAACTCTAAACCCTAAACAC
* *
58943537 TAAATCA-TAAACCCTAAACACTAAA
1 TAAA-CATTAAACTCTAAACCCTAAA
58943562 AGTAATTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 44 0.96
29 2 0.04
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.25
Consensus pattern (28 bp):
TAAACATTAAACTCTAAACCCTAAACAC
Found at i:58943559 original size:21 final size:21
Alignment explanation
Indices: 58943495--58943561 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
58943485 TATTAAACTT
* *
58943495 TAAACCCTAAACCCTAAACAT
1 TAAACTCTAAACCCTAAACAC
*
58943516 TAAACTCTAAACCCTAAATAC
1 TAAACTCTAAACCCTAAACAC
58943537 TAAA-TCATAAACCCTAAACAC
1 TAAACTC-TAAACCCTAAACAC
58943558 TAAA
1 TAAA
58943562 AGTAATTAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
20 2 0.05
21 39 0.95
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (21 bp):
TAAACTCTAAACCCTAAACAC
Found at i:58943654 original size:21 final size:21
Alignment explanation
Indices: 58943630--58943703 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 21
58943620 CTTCAAACTC
*
58943630 TAAAACCTAAACACTAAATCG
1 TAAAACCTAAACACTAAATCA
*** *
58943651 TAAATTATAAACACTAAACCA
1 TAAAACCTAAACACTAAATCA
58943672 -AAAACCCTAAATC-CTAAATCA
1 TAAAA-CCTAAA-CACTAAATCA
*
58943693 TAAACCCTAAA
1 TAAAACCTAAA
58943704 ATAAAACTTA
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
20 3 0.08
21 33 0.82
22 4 0.10
ACGTcount: A:0.54, C:0.24, G:0.01, T:0.20
Consensus pattern (21 bp):
TAAAACCTAAACACTAAATCA
Found at i:58946179 original size:91 final size:90
Alignment explanation
Indices: 58946024--58946239 Score: 258
Period size: 91 Copynumber: 2.4 Consensus size: 90
58946014 TTTTGGAGGT
* * * *
58946024 TCTGGCGTGTTATCAGTTGAAAAGCTTTTATGAGTAATTTGGCGTGTTATTAGGAGAGAATATTT
1 TCTGGCGTGTTATCAGTTG-AAAGCTCTTATGAGCAATTTGACATGTTATTAGGAGAGAATATTT
*
58946089 AGCCTACGA-GCTTTGTACTATGTGCA
65 AGCCTA-GAGGCTTTGGACTATGTGCA
* *
58946115 TCTGGTGTGTTATCGGTTAGAAAGCTCTTATGAGCAATTTGACATGTTATCGTA-G-GAGAATAT
1 TCTGGCGTGTTATCAGTT-GAAAGCTCTTATGAGCAATTTGACATGTTAT--TAGGAGAGAATAT
*
58946178 TTAGCCTATAGGCTTTGGACTATGTGCA
63 TTAGCCTAGAGGCTTTGGACTATGTGCA
* *
58946206 TCTAGCGTGTTATCAGTTGGAATAACTCTTATGA
1 TCTGGCGTGTTATCAGTT-GAA-AGCTCTTATGA
58946240 TCAAACTGGT
Statistics
Matches: 107, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
90 1 0.01
91 92 0.86
92 12 0.11
93 2 0.02
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (90 bp):
TCTGGCGTGTTATCAGTTGAAAGCTCTTATGAGCAATTTGACATGTTATTAGGAGAGAATATTTA
GCCTAGAGGCTTTGGACTATGTGCA
Found at i:58949381 original size:21 final size:22
Alignment explanation
Indices: 58949355--58949401 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
58949345 CTCTGCTCAA
*
58949355 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
58949376 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
58949398 ACTC
1 ACTC
58949402 ACTCCTTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:58955539 original size:18 final size:17
Alignment explanation
Indices: 58955500--58955541 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
58955490 TAATTTTAAA
*
58955500 ATATATT-TACAAATTC
1 ATATATTATAAAAATTC
*
58955516 AAATATTATAAAAATTAC
1 ATATATTATAAAAATT-C
58955534 ATATATTA
1 ATATATTA
58955542 AACCCCATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 6 0.29
17 7 0.33
18 8 0.38
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATATTATAAAAATTC
Found at i:58956037 original size:18 final size:18
Alignment explanation
Indices: 58955971--58956037 Score: 61
Period size: 16 Copynumber: 3.9 Consensus size: 18
58955961 AAATTATAAA
* *
58955971 AATAAAAATACCAAAATA
1 AATAAAAATATCAAAATT
*
58955989 AAT-CAAA-ATCAAAATT
1 AATAAAAATATCAAAATT
*
58956005 AA-AAAAATATAAAAAGTT
1 AATAAAAATATCAAAA-TT
58956023 AATAAAAAT-TCAAAA
1 AATAAAAATATCAAAA
58956038 AAAATAGCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
16 12 0.31
17 9 0.23
18 12 0.31
19 6 0.15
ACGTcount: A:0.70, C:0.07, G:0.01, T:0.21
Consensus pattern (18 bp):
AATAAAAATATCAAAATT
Found at i:58957487 original size:25 final size:25
Alignment explanation
Indices: 58957440--58957492 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
58957430 TACATTAATC
*
58957440 AAAGTTTAAGTGGGAAACTAAAAAT
1 AAAGTTTAAGTGGGAAACGAAAAAT
* *
58957465 AAAGTTTAATTGGGAGAA-GAAAAGT
1 AAAGTTTAAGTGGGA-AACGAAAAAT
58957490 AAA
1 AAA
58957493 AAAATACGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.53, C:0.02, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAGTTTAAGTGGGAAACGAAAAAT
Found at i:58967243 original size:20 final size:21
Alignment explanation
Indices: 58967215--58967253 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
58967205 TTAGGTCAGT
58967215 AAGCGACTTCT-GTCTATCTG
1 AAGCGACTTCTAGTCTATCTG
* *
58967235 AAGCTACTTTTAGTCTATC
1 AAGCGACTTCTAGTCTATC
58967254 CCGAGTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (21 bp):
AAGCGACTTCTAGTCTATCTG
Found at i:58989021 original size:11 final size:12
Alignment explanation
Indices: 58989005--58989033 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
58988995 AAACTACCTG
58989005 AAATAAAA-TAA
1 AAATAAAACTAA
58989016 AAATAAAACTAA
1 AAATAAAACTAA
58989028 AAATAA
1 AAATAA
58989034 GAAATAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.17
Consensus pattern (12 bp):
AAATAAAACTAA
Found at i:59002266 original size:18 final size:18
Alignment explanation
Indices: 59002243--59002278 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
59002233 ATCCCAAGGA
59002243 GAAAACATTGTTAATCAC
1 GAAAACATTGTTAATCAC
59002261 GAAAACATTGTTAATCAC
1 GAAAACATTGTTAATCAC
59002279 CAAATGACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.28
Consensus pattern (18 bp):
GAAAACATTGTTAATCAC
Found at i:59002904 original size:8 final size:8
Alignment explanation
Indices: 59002891--59002919 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
59002881 TAACAACCAC
59002891 AATTTTGT
1 AATTTTGT
59002899 AATTTTGT
1 AATTTTGT
59002907 AATTTTGT
1 AATTTTGT
59002915 AATTT
1 AATTT
59002920 CAAAAGTACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (8 bp):
AATTTTGT
Found at i:59003562 original size:18 final size:18
Alignment explanation
Indices: 59003541--59003575 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
59003531 ATTAAAAAGA
*
59003541 AAAATATTTTTAATAATG
1 AAAATATATTTAATAATG
*
59003559 AAAATATATTTGATAAT
1 AAAATATATTTAATAAT
59003576 TATTATTCTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (18 bp):
AAAATATATTTAATAATG
Found at i:59004551 original size:28 final size:27
Alignment explanation
Indices: 59004519--59004579 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
59004509 AAAAAATAAT
* * *
59004519 CAAAATATTATAACTTTTTTTATTTAC
1 CAAAAAATTATAAATTTATTTATTTAC
59004546 CAAAAAATTATAAATTTATTTATTTAC
1 CAAAAAATTATAAATTTATTTATTTAC
59004573 CAAAAAA
1 CAAAAAA
59004580 AACTTAACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.43
Consensus pattern (27 bp):
CAAAAAATTATAAATTTATTTATTTAC
Found at i:59004649 original size:27 final size:27
Alignment explanation
Indices: 59004611--59004662 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
59004601 GGCTAATCAC
*
59004611 ATTGGCTGCACCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
*
59004638 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAAAGGTGCCAAAG
59004663 GACTAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAGAG
Found at i:59005257 original size:19 final size:19
Alignment explanation
Indices: 59005233--59005328 Score: 115
Period size: 19 Copynumber: 5.2 Consensus size: 19
59005223 TCTAATTAAG
*
59005233 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTCATT
* *
59005252 TAATAAAT-TATTCTCATT
1 TAATAACTCTATTTTCATT
* *
59005270 TAACAACTCTATTTTAATT
1 TAATAACTCTATTTTCATT
* *
59005289 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTCATT
59005307 TAATAACTCTATTTTCATT
1 TAATAACTCTATTTTCATT
59005326 TAA
1 TAA
59005329 AATATAAAAT
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
18 29 0.47
19 33 0.53
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATAACTCTATTTTCATT
Found at i:59005278 original size:37 final size:37
Alignment explanation
Indices: 59005237--59005328 Score: 157
Period size: 37 Copynumber: 2.5 Consensus size: 37
59005227 ATTAAGTAAT
*
59005237 AACTCTATTTTAATTTAATAAATTATTCTCATTTAAC
1 AACTCTATTTTAATTTAATAAACTATTCTCATTTAAC
*
59005274 AACTCTATTTTAATTTAATAAACTATTCTCATTTAAT
1 AACTCTATTTTAATTTAATAAACTATTCTCATTTAAC
*
59005311 AACTCTATTTTCATTTAA
1 AACTCTATTTTAATTTAA
59005329 AATATAAAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (37 bp):
AACTCTATTTTAATTTAATAAACTATTCTCATTTAAC
Found at i:59005576 original size:19 final size:19
Alignment explanation
Indices: 59005554--59005619 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
59005544 TTTAATTTTT
59005554 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
59005573 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
*
59005591 TTACATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
59005610 TTAAATTAAA
1 TTAAATTAAA
59005620 CTATTTTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 14 0.37
19 24 0.63
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:59006017 original size:27 final size:27
Alignment explanation
Indices: 59005933--59006018 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 27
59005923 TTTTAGTCCT
*
59005933 TTGGCACCATTGGTGCCGCCAATCACA
1 TTGGCACCATTGGTGCCGCCAATCTCA
* *
59005960 TTGGCACCATTGATGCCGCCAATCTCT
1 TTGGCACCATTGGTGCCGCCAATCTCA
* * *
59005987 TTGGCACCTTTGGTGCCGCCAATGTGA
1 TTGGCACCATTGGTGCCGCCAATCTCA
59006014 TTGGC
1 TTGGC
59006019 CTGATCAGGC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.17, C:0.30, G:0.24, T:0.28
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCTCA
Found at i:59006122 original size:20 final size:20
Alignment explanation
Indices: 59006078--59006115 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
59006068 GCGATTCAAT
59006078 ATATATAATAATTATTTAAC
1 ATATATAATAATTATTTAAC
59006098 ATATATAATTAATT-TTTA
1 ATATATAA-TAATTATTTA
59006116 TAATATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATATAATAATTATTTAAC
Found at i:59009065 original size:14 final size:14
Alignment explanation
Indices: 59009046--59009080 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
59009036 AAACCCCAAA
59009046 CTTAAATCTCGAAC
1 CTTAAATCTCGAAC
* *
59009060 CTTAAACCTTGAAC
1 CTTAAATCTCGAAC
59009074 CTTAAAT
1 CTTAAAT
59009081 TTTAAACCCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (14 bp):
CTTAAATCTCGAAC
Found at i:59012643 original size:10 final size:10
Alignment explanation
Indices: 59012628--59012663 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
59012618 TGAAATGAAA
59012628 TAGAAAATTT
1 TAGAAAATTT
*
59012638 TAGAAAAATT
1 TAGAAAATTT
59012648 TA-AAAATTT
1 TAGAAAATTT
59012657 TAGAAAA
1 TAGAAAA
59012664 AAAGGTCACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (10 bp):
TAGAAAATTT
Found at i:59019192 original size:12 final size:12
Alignment explanation
Indices: 59019175--59019200 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
59019165 ATTTTTATGA
59019175 TTTTTATAATTT
1 TTTTTATAATTT
59019187 TTTTTATAATTT
1 TTTTTATAATTT
59019199 TT
1 TT
59019201 ACGATTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTATAATTT
Found at i:59019199 original size:9 final size:9
Alignment explanation
Indices: 59019158--59019291 Score: 69
Period size: 9 Copynumber: 14.4 Consensus size: 9
59019148 TTTTGTTGCA
*
59019158 TTTTATTAT
1 TTTTATAAT
*
59019167 TTTTATGAT
1 TTTTATAAT
59019176 TTTTATAATTTT
1 TTTTATAA---T
59019188 TTTTATAAT
1 TTTTATAAT
**
59019197 TTTTACGA-
1 TTTTATAAT
59019205 TTTTATAAT
1 TTTTATAAT
*
59019214 TTTTAATAAA
1 TTTT-ATAAT
*
59019224 TTTTAGATAT
1 TTTTATA-AT
*
59019234 TTTTATTAAAA
1 TTTTA-T-AAT
* *
59019245 TTTAATCAT
1 TTTTATAAT
*
59019254 TTTTATAAC
1 TTTTATAAT
*
59019263 TTTTATTGAT
1 TTTTA-TAAT
59019273 TTTTAT--T
1 TTTTATAAT
59019280 TTTTAT-AT
1 TTTTATAAT
59019288 TTTT
1 TTTT
59019292 TTTGTCACAT
Statistics
Matches: 96, Mismatches: 19, Indels: 21
0.71 0.14 0.15
Matches are distributed among these distances:
7 7 0.07
8 11 0.11
9 41 0.43
10 22 0.23
11 5 0.05
12 10 0.10
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (9 bp):
TTTTATAAT
Found at i:59019199 original size:29 final size:30
Alignment explanation
Indices: 59019158--59019217 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 30
59019148 TTTTGTTGCA
*
59019158 TTTTATT-ATTTTTATGATTTTTATAATTTT
1 TTTTATTAATTTTTACGA-TTTTATAATTTT
59019188 TTTTA-TAATTTTTACGATTTTATAATTTT
1 TTTTATTAATTTTTACGATTTTATAATTTT
59019217 T
1 T
59019218 AATAAATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 14 0.50
30 14 0.50
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (30 bp):
TTTTATTAATTTTTACGATTTTATAATTTT
Found at i:59019199 original size:30 final size:29
Alignment explanation
Indices: 59019158--59019217 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
59019148 TTTTGTTGCA
* *
59019158 TTTTATTATTTTTATGATTTTTATAATTTT
1 TTTTATAATTTTTACGA-TTTTATAATTTT
59019188 TTTTATAATTTTTACGATTTTATAATTTT
1 TTTTATAATTTTTACGATTTTATAATTTT
59019217 T
1 T
59019218 AATAAATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 13 0.46
30 15 0.54
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (29 bp):
TTTTATAATTTTTACGATTTTATAATTTT
Found at i:59019207 original size:21 final size:21
Alignment explanation
Indices: 59019166--59019208 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
59019156 CATTTTATTA
* *
59019166 TTTTTATGATTTTTATAATTT
1 TTTTTATAATTTTTACAATTT
*
59019187 TTTTTATAATTTTTACGATTT
1 TTTTTATAATTTTTACAATTT
59019208 T
1 T
59019209 ATAATTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (21 bp):
TTTTTATAATTTTTACAATTT
Found at i:59019226 original size:19 final size:19
Alignment explanation
Indices: 59019204--59019268 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 19
59019194 AATTTTTACG
59019204 ATTTTATAATTTTTAATAA
1 ATTTTATAATTTTTAATAA
* *
59019223 ATTTTAGATATTTTTATTAAA
1 ATTTTATA-ATTTTTAAT-AA
* *
59019244 ATTTAATCATTTTT-ATAA
1 ATTTTATAATTTTTAATAA
*
59019262 CTTTTAT
1 ATTTTAT
59019269 TGATTTTTAT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
18 7 0.19
19 8 0.22
20 14 0.39
21 7 0.19
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (19 bp):
ATTTTATAATTTTTAATAA
Found at i:59019237 original size:20 final size:20
Alignment explanation
Indices: 59019212--59019277 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
59019202 CGATTTTATA
59019212 ATTTTTAATAAATTTTAGAT-
1 ATTTTTAATAAATTTTA-ATC
* *
59019232 ATTTTTATTAAAATTTAATC
1 ATTTTTAATAAATTTTAATC
* * *
59019252 ATTTTT-ATAACTTTTATTG
1 ATTTTTAATAAATTTTAATC
59019271 ATTTTTA
1 ATTTTTA
59019278 TTTTTTATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 16 0.43
20 21 0.57
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
ATTTTTAATAAATTTTAATC
Found at i:59036620 original size:131 final size:131
Alignment explanation
Indices: 59036445--59036743 Score: 493
Period size: 131 Copynumber: 2.3 Consensus size: 131
59036435 ATTTACAAAT
* *
59036445 GTAACCAATTGAATTTTCCAATTAA---TCATACAATCATAATCAAATCAGAGTTTGTTCAAATA
1 GTAATCAATTGAATTATCCAATTAATTGTCATACAATCATAATCAAATCAGAGTTTGTTCAAATA
* *
59036507 TAAACCCAAAACTCATGTACTCATTTCTTGAACTATGAACGTAATTCCTTAAAAATAATTATGAA
66 TAAACCCAAAACTCATGTACTCATTTCTTAAACTATGAACATAATTCCTTAAAAATAATTATGAA
59036572 C
131 C
*
59036573 GTAATCAATTGAATTATCCAATTAATTGTCATACAATCATAATCAAATCAGAGTTTGTTTAAATA
1 GTAATCAATTGAATTATCCAATTAATTGTCATACAATCATAATCAAATCAGAGTTTGTTCAAATA
* *
59036638 TATACCCAAAACTCATGTACTCATTTCTTAAATTATGAACATAATTCCTTAAAAATAATTATGAA
66 TAAACCCAAAACTCATGTACTCATTTCTTAAACTATGAACATAATTCCTTAAAAATAATTATGAA
59036703 C
131 C
59036704 GTAATCAATTGAATTATCCAATTAATTG---TACAATCATAAT
1 GTAATCAATTGAATTATCCAATTAATTGTCATACAATCATAAT
59036744 TTTACAGTTG
Statistics
Matches: 161, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
128 35 0.22
131 126 0.78
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.35
Consensus pattern (131 bp):
GTAATCAATTGAATTATCCAATTAATTGTCATACAATCATAATCAAATCAGAGTTTGTTCAAATA
TAAACCCAAAACTCATGTACTCATTTCTTAAACTATGAACATAATTCCTTAAAAATAATTATGAA
C
Found at i:59036911 original size:110 final size:110
Alignment explanation
Indices: 59036711--59036911 Score: 246
Period size: 110 Copynumber: 1.8 Consensus size: 110
59036701 AACGTAATCA
**
59036711 ATTGAATTATCCAATTAATTGTACAATCATAATTTTACAGTTGGAACATAATTTGTTCGAATATA
1 ATTGAATTATCCAATTAATTGTACAATCATAAACTTACAGTTGGAACATAATTTGTTCGAATATA
* **
59036776 AGCCCTAAACACATATACACGTGTCTTGAATTACTAACATAATTG
66 AACCCTAAACACATATACAAATGTCTTGAATTACTAACATAATTG
* * * * *
59036821 ATTGAATTA-CTCAATTGATTGTACACTCATAAACTTATAGTT-GAATCGA-ATTTTGTTTGAAT
1 ATTGAATTATC-CAATTAATTGTACAATCATAAACTTACAGTTGGAA-C-ATAATTTGTTCGAAT
* *
59036883 ATAAACCCTAAACTCATATATAAATGTCT
63 ATAAACCCTAAACACATATACAAATGTCT
59036912 CAAATTACGA
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
109 4 0.05
110 71 0.93
111 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (110 bp):
ATTGAATTATCCAATTAATTGTACAATCATAAACTTACAGTTGGAACATAATTTGTTCGAATATA
AACCCTAAACACATATACAAATGTCTTGAATTACTAACATAATTG
Found at i:59037199 original size:132 final size:131
Alignment explanation
Indices: 59037031--59037273 Score: 335
Period size: 132 Copynumber: 1.8 Consensus size: 131
59037021 ATTGATTGCA
* *
59037031 TTATTCAATTAATCTATAATCATAAAGTTACAATTGAATCGAAAGTTGTT-AAAGTGTAAACCCT
1 TTATCCAATTAATCTATAATCATAAAGTTACAATTGAATCGAAAGTTGTTCAAA-TATAAACCCT
* ** * *
59037095 ACACTCATATCCACATGTCTTGAATTATGAACGTAACCGATTGAATTCTAATTAATTGTACAATC
65 AAACTCATATCCACATGTCTCAAATTATGAACATAACCAATTGAATTCTAATTAATTGTACAATC
59037160 AT
130 AT
* * * *
59037162 TTATCCAATTAATCGTATAATCATGAATTTACAATTGAATCGAAATTTGTTCAAATATGAACCCT
1 TTATCCAATTAATC-TATAATCATAAAGTTACAATTGAATCGAAAGTTGTTCAAATATAAACCCT
** *
59037227 AAACTCATATGTACATGTCTCAAATTTTGAACATAACCAATTGAATT
65 AAACTCATATCCACATGTCTCAAATTATGAACATAACCAATTGAATT
59037274 ATCCAATTAA
Statistics
Matches: 96, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
131 13 0.14
132 80 0.83
133 3 0.03
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (131 bp):
TTATCCAATTAATCTATAATCATAAAGTTACAATTGAATCGAAAGTTGTTCAAATATAAACCCTA
AACTCATATCCACATGTCTCAAATTATGAACATAACCAATTGAATTCTAATTAATTGTACAATCA
T
Found at i:59037654 original size:18 final size:17
Alignment explanation
Indices: 59037606--59037654 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 17
59037596 TTAATCCTAC
59037606 AATCATAAATTTATATTTG
1 AATCA-AAATTT-TATTTG
59037625 AATCAAAA-TTTATTTG
1 AATCAAAATTTTATTTG
*
59037641 AATATAAAATTTTA
1 AAT-CAAAATTTTA
59037655 AGTGTGTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 9 0.33
17 6 0.22
18 7 0.26
19 5 0.19
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (17 bp):
AATCAAAATTTTATTTG
Found at i:59037988 original size:24 final size:24
Alignment explanation
Indices: 59037945--59038006 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
59037935 CCCTTCAAAG
*
59037945 ATAATGAAATTATAAGTTAATATA
1 ATAATAAAATTATAAGTTAATATA
* * *
59037969 ATGATAAAATTGTAATTTAATATA
1 ATAATAAAATTATAAGTTAATATA
*
59037993 ATAATAAAACTATA
1 ATAATAAAATTATA
59038007 CTTTTAATCC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (24 bp):
ATAATAAAATTATAAGTTAATATA
Done.