Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 199 of 230
Found at i:59818310 original size:15 final size:15
Alignment explanation
Indices: 59818276--59818315 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
59818266 TTATTTATTT
*
59818276 TAGTAAA-ATAAAAA
1 TAGTAAACAAAAAAA
59818290 TA-TAAACAAAAAAA
1 TAGTAAACAAAAAAA
59818304 TAGTAAACAAAA
1 TAGTAAACAAAA
59818316 GTAAGCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 4 0.17
14 10 0.43
15 9 0.39
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.17
Consensus pattern (15 bp):
TAGTAAACAAAAAAA
Found at i:59821246 original size:55 final size:55
Alignment explanation
Indices: 59821185--59821295 Score: 161
Period size: 55 Copynumber: 2.0 Consensus size: 55
59821175 TTGTCTTAAT
* *
59821185 TGTTGGAATACTGCTTCTTTTAAATAT-ATTTTTTATATGTTTAAATCGATTGTTA
1 TGTTGGAATACTGCTTCTTTTAAAT-TGATTGTTTATATGTTTAAATCGACTGTTA
** *
59821240 TGTTGGAATACTGCTTCTTTTGGATTGATTGTTTATATGTTTAAATTGACTGTTA
1 TGTTGGAATACTGCTTCTTTTAAATTGATTGTTTATATGTTTAAATCGACTGTTA
59821295 T
1 T
59821296 AGCACTTCTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
54 1 0.02
55 49 0.98
ACGTcount: A:0.24, C:0.07, G:0.16, T:0.52
Consensus pattern (55 bp):
TGTTGGAATACTGCTTCTTTTAAATTGATTGTTTATATGTTTAAATCGACTGTTA
Found at i:59822564 original size:25 final size:22
Alignment explanation
Indices: 59822521--59822566 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
59822511 GATGTTTAGA
*
59822521 ATTTTACTCAAATAATAACTTT
1 ATTTTACTCAAAAAATAACTTT
59822543 ATTTTACATCAATAAAATTAACTT
1 ATTTTAC-TCAA-AAAA-TAACTT
59822567 AACTTTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 7 0.35
23 4 0.20
24 3 0.15
25 6 0.30
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTTTACTCAAAAAATAACTTT
Found at i:59826769 original size:5 final size:5
Alignment explanation
Indices: 59826759--59826784 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
59826749 TAAATATATA
59826759 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
59826785 TTAGTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:59827516 original size:20 final size:20
Alignment explanation
Indices: 59827460--59827519 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
59827450 AGACAGATCA
59827460 TATTGAATTAATCAATTTTAT
1 TATTGAATTAATCAATTTT-T
* ** * *
59827481 GATT-TCTTATTTAATTTTT
1 TATTGAATTAATCAATTTTT
59827500 TATTGAATTAATCAATTTTT
1 TATTGAATTAATCAATTTTT
59827520 AGTGAATTTT
Statistics
Matches: 28, Mismatches: 10, Indels: 3
0.68 0.24 0.07
Matches are distributed among these distances:
19 4 0.14
20 21 0.75
21 3 0.11
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (20 bp):
TATTGAATTAATCAATTTTT
Found at i:59830538 original size:22 final size:23
Alignment explanation
Indices: 59830480--59830524 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
59830470 ATGCAATCTT
*
59830480 ATATATGA-TATGTAATCTTAGA
1 ATATATGATTCTGTAATCTTAGA
59830502 ATATATGATTCTGTAATCTTAGA
1 ATATATGATTCTGTAATCTTAGA
59830525 GATTTGATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.42
Consensus pattern (23 bp):
ATATATGATTCTGTAATCTTAGA
Found at i:59831528 original size:29 final size:31
Alignment explanation
Indices: 59831496--59831562 Score: 84
Period size: 29 Copynumber: 2.2 Consensus size: 31
59831486 AAATTAATAT
59831496 TTCATGTATAAAATCACACA-AAAT-CAAAA
1 TTCATGTATAAAATCACACATAAATCCAAAA
* * * *
59831525 TTCATGTATAACATTACATATTAATCCAAAA
1 TTCATGTATAAAATCACACATAAATCCAAAA
59831556 TTCATGT
1 TTCATGT
59831563 TTAATTTTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 17 0.53
30 3 0.09
31 12 0.38
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.33
Consensus pattern (31 bp):
TTCATGTATAAAATCACACATAAATCCAAAA
Found at i:59831597 original size:19 final size:19
Alignment explanation
Indices: 59831553--59831598 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
59831543 TATTAATCCA
*
59831553 AAATTCATGTTTAATTTTG
1 AAATTCTTGTTTAATTTTG
59831572 AAATTCTTGTTTAATTTTG
1 AAATTCTTGTTTAATTTTG
59831591 AAATTCTT
1 AAATTCTT
59831599 CCTTATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.30, C:0.07, G:0.09, T:0.54
Consensus pattern (19 bp):
AAATTCTTGTTTAATTTTG
Found at i:59839670 original size:48 final size:52
Alignment explanation
Indices: 59839610--59839826 Score: 171
Period size: 62 Copynumber: 3.9 Consensus size: 52
59839600 CCAATGTACC
*
59839610 TAATTTATATTAC-AAAGT-TT-G-TTCCAAGTTTTAATGTTGTAATGTATT
1 TAATTTATATTACAAAAATATTAGTTTCCAAGTTTTAATGTTGTAATGTATT
*
59839658 TAATTTATATTACAAAACTAATATTACAAAGTTTGTTTCAAGTTTTAATGTTGTAATGTATT
1 TAATTTATATTAC-AAA--AATATT----AG--T-TTCCAAGTTTTAATGTTGTAATGTATT
59839720 TAATTTATATTACAAAATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATT
1 TAATTTATATTACAAAA---ATATT----AG--T-TTCCAAGTTTTAATGTTGTAATGTATT
*
59839782 TAATTTATATTAC-AAAGT-TT-G-TTCCAAGTTTTAATGTTGTAATGT
1 TAATTTATATTACAAAAATATTAGTTTCCAAGTTTTAATGTTGTAATGT
59839827 TGTAATGTTG
Statistics
Matches: 148, Mismatches: 4, Indels: 34
0.80 0.02 0.18
Matches are distributed among these distances:
48 37 0.25
50 2 0.01
52 3 0.02
53 2 0.01
57 2 0.01
58 2 0.01
59 1 0.01
61 6 0.04
62 93 0.63
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.48
Consensus pattern (52 bp):
TAATTTATATTACAAAAATATTAGTTTCCAAGTTTTAATGTTGTAATGTATT
Found at i:59839692 original size:62 final size:62
Alignment explanation
Indices: 59839616--59839797 Score: 337
Period size: 62 Copynumber: 2.9 Consensus size: 62
59839606 TACCTAATTT
59839616 ATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAAAACTA
1 ATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAAAACTA
* * *
59839678 ATATTACAAAGTTTGTTTCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAAAATTT
1 ATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAAAACTA
59839740 ATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAAA
1 ATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAAA
59839798 GTTTGTTCCA
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.47
Consensus pattern (62 bp):
ATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATTACAAAACTA
Found at i:59839740 original size:14 final size:14
Alignment explanation
Indices: 59839721--59839749 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
59839711 TAATGTATTT
59839721 AATTTATATTACAA
1 AATTTATATTACAA
59839735 AATTTATATTACAA
1 AATTTATATTACAA
59839749 A
1 A
59839750 GTTTGTTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:59839826 original size:8 final size:8
Alignment explanation
Indices: 59839813--59839848 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
59839803 TTCCAAGTTT
59839813 TAATGTTG
1 TAATGTTG
59839821 TAATGTTG
1 TAATGTTG
59839829 TAATGTTG
1 TAATGTTG
59839837 TAATGTTG
1 TAATGTTG
59839845 TAAT
1 TAAT
59839849 ATTGCAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.28, C:0.00, G:0.22, T:0.50
Consensus pattern (8 bp):
TAATGTTG
Found at i:59841664 original size:4 final size:4
Alignment explanation
Indices: 59841649--59841685 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
59841639 TAATAGAACT
*
59841649 AGTA AATA AGTA AGTA AGTA AGTA AGTA AGTA AGTA A
1 AGTA AGTA AGTA AGTA AGTA AGTA AGTA AGTA AGTA A
59841686 TAATAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.54, C:0.00, G:0.22, T:0.24
Consensus pattern (4 bp):
AGTA
Found at i:59841754 original size:23 final size:23
Alignment explanation
Indices: 59841711--59841754 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
59841701 TAATAAAAGG
*
59841711 CTAATAATAAAAATATTAATAAA
1 CTAATAATAAAAATATCAATAAA
*
59841734 CTAATATTAAACAA-ATCAATA
1 CTAATAATAAA-AATATCAATA
59841755 GAAAACAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.89
24 2 0.11
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (23 bp):
CTAATAATAAAAATATCAATAAA
Found at i:59845239 original size:12 final size:12
Alignment explanation
Indices: 59845222--59845246 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
59845212 TTATAATATT
59845222 TATAAAATAAAA
1 TATAAAATAAAA
59845234 TATAAAATAAAA
1 TATAAAATAAAA
59845246 T
1 T
59845247 TTTAAAACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
TATAAAATAAAA
Found at i:59845348 original size:23 final size:24
Alignment explanation
Indices: 59845322--59845378 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 24
59845312 TCTTAATTTA
59845322 TCTCAT-AAATTCCA-ACTCAATGG
1 TCTCATCAAATTCCATA-TCAATGG
59845345 TCTCATTCACAAATTCCATATCAATGG
1 TCTCA-T--CAAATTCCATATCAATGG
59845372 TCTCATC
1 TCTCATC
59845379 TTTTACCTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
23 5 0.17
24 2 0.07
26 1 0.03
27 20 0.69
28 1 0.03
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (24 bp):
TCTCATCAAATTCCATATCAATGG
Found at i:59846816 original size:40 final size:40
Alignment explanation
Indices: 59846739--59846872 Score: 196
Period size: 40 Copynumber: 3.3 Consensus size: 40
59846729 AGCGGCACTT
* * *
59846739 TTAGCGGCGTTTGGAGCAAAAACGCTGCTAAAGAGTGAGCA
1 TTAGCGGCGTTT-AAGCAAAAGCGCCGCTAAAGAGTGAGCA
*
59846780 TTAGCGGCGTTTAAGTAAAAGCGCCGCTAAAGAGTGAGCA
1 TTAGCGGCGTTTAAGCAAAAGCGCCGCTAAAGAGTGAGCA
* *
59846820 TTAGTGGCGTTTAAGGAAAAGCGCCGCTAAAGAGTGAGCA
1 TTAGCGGCGTTTAAGCAAAAGCGCCGCTAAAGAGTGAGCA
*
59846860 TTAGCAGCGTTTA
1 TTAGCGGCGTTTA
59846873 TAAAAAACGC
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 73 0.86
41 12 0.14
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.22
Consensus pattern (40 bp):
TTAGCGGCGTTTAAGCAAAAGCGCCGCTAAAGAGTGAGCA
Found at i:59847018 original size:112 final size:112
Alignment explanation
Indices: 59846819--59847525 Score: 1153
Period size: 112 Copynumber: 6.3 Consensus size: 112
59846809 AAGAGTGAGC
** * *
59846819 ATTAGTGGCGTTTAAGGAAAAGCGCCGCTAAAGAGTGAGCATTAGCAGCGTTTATAAAAAACGCC
1 ATTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
*
59846884 GCAAATAATACACCCAGACGGTGCCGTTCTGTGGCCTTTGGGGGGGA
66 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
*
59846931 AATAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
1 ATTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
* * * *
59846996 GGAAATAATACTCCCAAACGGTGCCATTTTGTGGCCTTTGGGGGGGA
66 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
*
59847043 GGACTTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGACTGAACATTAGCAGCGTTTATAAAAAAC
1 --A-TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAAC
* * *
59847108 GCCACAAATAATACACCCAAACGGTGTCGTTTTGTGGCCTTTGGGGGGGA
63 GCCGCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
*
59847158 CTTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
1 ATTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
* *
59847223 GCAAATAATACACCCAGACGGTGCCATTTTGTGGCCTTTGGGGGAGA
66 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
* *
59847270 ATTGGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATGAAAAACGCC
1 ATTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
*
59847335 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTAGGGGGGA
66 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
**
59847382 CCTAGTGGCGTTTATTGTAAAGCGCCGCTAAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGC
1 ATTAGTGGCGTTTATTGTAAAGCGCCGCT-AAAGAGTGAACATTAGCAGCGTTTATAAAAAACGC
* *
59847447 CGCAAATAATACACCCAGACGGTGCCGTTTTGTGTCCTTTGGGGGGGC
65 CGCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
*
59847495 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAA
1 ATTAGTGGCGTTTATTGTAAAGCGCCGCTAA
59847526 TCTAGGTGTT
Statistics
Matches: 551, Mismatches: 40, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
112 341 0.62
113 105 0.19
114 1 0.00
115 104 0.19
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (112 bp):
ATTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
Found at i:59847215 original size:227 final size:225
Alignment explanation
Indices: 59846819--59847525 Score: 1166
Period size: 227 Copynumber: 3.1 Consensus size: 225
59846809 AAGAGTGAGC
** * *
59846819 ATTAGTGGCGTTTAAGGAAAAGCGCCGCTAAAGAGTGAGCATTAGCAGCGTTTATAAAAAACGCC
1 ATTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
* *
59846884 GCAAATAATACACCCAGACGGTGCCGTTCTGTGGCCTTTGGGGGGGAAATAGTGGCGTTTATTGT
66 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGACATAGTGGCGTTTATTGT
* * *
59846949 AAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCCGGAAATAATACTCCCAAA
131 AAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCCGCAAATAATACACCCAGA
59847014 CGGTGCCATTTTGTGGCCTTTGGGGGGGAGG
196 CGGTGCCATTTTGTGGCCTTT-GGGGGGAGG
*
59847045 ACTTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGACTGAACATTAGCAGCGTTTATAAAAAACGC
1 A-TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGC
* * * *
59847110 CACAAATAATACACCCAAACGGTGTCGTTTTGTGGCCTTTGGGGGGGACTTAGTGGCGTTTATTG
65 CGCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGACATAGTGGCGTTTATTG
59847175 TAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCCGCAAATAATACACCCAG
130 TAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCCGCAAATAATACACCCAG
*
59847240 ACGGTGCCATTTTGTGGCCTTT-GGGGGAGA
195 ACGGTGCCATTTTGTGGCCTTTGGGGGGAGG
* *
59847270 ATTGGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATGAAAAACGCC
1 ATTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
* *
59847335 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTAGGGGGGACCTAGTGGCGTTTATTGT
66 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGACATAGTGGCGTTTATTGT
59847400 AAAGCGCCGCTAAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCCGCAAATAATACACCCAG
131 AAAGCGCCGCT-AAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCCGCAAATAATACACCCAG
* * *
59847465 ACGGTGCCGTTTTGTGTCCTTTGGGGGG-GC
195 ACGGTGCCATTTTGTGGCCTTTGGGGGGAGG
*
59847495 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAA
1 ATTAGTGGCGTTTATTGTAAAGCGCCGCTAA
59847526 TCTAGGTGTT
Statistics
Matches: 450, Mismatches: 28, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
224 132 0.29
225 111 0.25
226 6 0.01
227 201 0.45
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (225 bp):
ATTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGACATAGTGGCGTTTATTGT
AAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCCGCAAATAATACACCCAGA
CGGTGCCATTTTGTGGCCTTTGGGGGGAGG
Found at i:59849347 original size:84 final size:84
Alignment explanation
Indices: 59849246--59849442 Score: 349
Period size: 84 Copynumber: 2.3 Consensus size: 84
59849236 TAAACTTTTG
*
59849246 GTGGCGTTTTTAGGAAAACGCCACAAATAATGCAATTCCAGACCACGAAAACGGTGTCGCTTCTG
1 GTGGCGTTTTTAGGAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGCTTCTG
59849311 TTCACAGCTGTAATATTTA
66 TTCACAGCTGTAATATTTA
*
59849330 GTGGCGTTTTTAGGAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTTTCTG
1 GTGGCGTTTTTAGGAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGCTTCTG
59849395 TTCACAGCTGTAATATTTA
66 TTCACAGCTGTAATATTTA
**
59849414 GTGGCGTTTTTACCAAAAACGCCACAAAA
1 GTGGCGTTTTTA-GGAAAACGCCACAAAA
59849443 CGGTGTTAAT
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
84 94 0.87
85 14 0.13
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (84 bp):
GTGGCGTTTTTAGGAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGCTTCTG
TTCACAGCTGTAATATTTA
Found at i:59851084 original size:11 final size:11
Alignment explanation
Indices: 59851064--59851092 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
59851054 GAATATCTCA
59851064 AACT-ATGGGT
1 AACTAATGGGT
59851074 AACTAATGGGT
1 AACTAATGGGT
59851085 AACTAATG
1 AACTAATG
59851093 TATTATCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (11 bp):
AACTAATGGGT
Found at i:59851862 original size:17 final size:17
Alignment explanation
Indices: 59851840--59851941 Score: 96
Period size: 17 Copynumber: 5.6 Consensus size: 17
59851830 TGTTAAATTT
59851840 ATTACTAAAATACATTA
1 ATTACTAAAATACATTA
*
59851857 ATTACTAAAATAAATTA
1 ATTACTAAAATACATTA
* * *
59851874 CTTACTAAAATTTGTTTAAATTT
1 ATTACTAAAA------TACATTA
59851897 ATTACTAAAATACATTA
1 ATTACTAAAATACATTA
*
59851914 CTTACTAAAATACATTA
1 ATTACTAAAATACATTA
*
59851931 CTTACTAAAAT
1 ATTACTAAAAT
59851942 TTGTTTAAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
17 57 0.79
23 15 0.21
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (17 bp):
ATTACTAAAATACATTA
Found at i:59851974 original size:57 final size:57
Alignment explanation
Indices: 59851832--59851964 Score: 239
Period size: 57 Copynumber: 2.3 Consensus size: 57
59851822 CGATTGAATG
*
59851832 TTAAATTTATTACTAAAATACATTAATTACTAAAATAAATTACTTACTAAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTAAAATTTGT
*
59851889 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTAAAATTTGT
59851946 TTAAATTTATTACTTAAAA
1 TTAAATTTATTAC-TAAAA
59851965 ATGTTACTTA
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
57 68 0.93
58 5 0.07
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.43
Consensus pattern (57 bp):
TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTAAAATTTGT
Found at i:59851984 original size:13 final size:13
Alignment explanation
Indices: 59851946--59851990 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
59851936 TAAAATTTGT
59851946 TTAAATTTATTAC
1 TTAAATTTATTAC
** *
59851959 TTAAAAATGTTAC
1 TTAAATTTATTAC
59851972 TTAAATTTATTAC
1 TTAAATTTATTAC
59851985 TTAAAT
1 TTAAAT
59851991 GATTATAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.49
Consensus pattern (13 bp):
TTAAATTTATTAC
Found at i:59852219 original size:72 final size:72
Alignment explanation
Indices: 59852140--59852285 Score: 265
Period size: 72 Copynumber: 2.0 Consensus size: 72
59852130 AATAAAATAT
* **
59852140 TAAAAAATATGTGGAATATTAATATTGACTATTAAAATAGCATGTTATTTTATTAAATATTATTA
1 TAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTA
59852205 ATAATTA
66 ATAATTA
59852212 TAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTA
1 TAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTA
59852277 ATAATTA
66 ATAATTA
59852284 TA
1 TA
59852286 TTAGTAATGT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (72 bp):
TAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTA
ATAATTA
Found at i:59852364 original size:25 final size:25
Alignment explanation
Indices: 59852322--59852454 Score: 203
Period size: 25 Copynumber: 5.2 Consensus size: 25
59852312 ATTTTATTAA
*
59852322 ATAATACATAATAACTTACAACTTAC
1 ATAATACAT-TTAACTTACAACTTAC
*
59852348 ACAATACATTTAACTTACAACTTAC
1 ATAATACATTTAACTTACAACTTAC
59852373 ATAATACATTTAACTTACAACTTAC
1 ATAATACATTTAACTTACAACTTAC
*
59852398 ATAATACATAATAACTTACAACTTAC
1 ATAATACAT-TTAACTTACAACTTAC
59852424 ATAATACATTTAACTTACATAACTTAC
1 ATAATACATTTAACTTAC--AACTTAC
59852451 ATAA
1 ATAA
59852455 CTTACCATTG
Statistics
Matches: 99, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
25 56 0.57
26 32 0.32
27 11 0.11
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (25 bp):
ATAATACATTTAACTTACAACTTAC
Found at i:59857944 original size:21 final size:21
Alignment explanation
Indices: 59857915--59857989 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 21
59857905 CTACAACTTA
59857915 AAGCAGAGGCAGAAGCGAGGG
1 AAGCAGAGGCAGAAGCGAGGG
* * *
59857936 AAGCGGAGGCTGCAGCGAGGG
1 AAGCAGAGGCAGAAGCGAGGG
* * * *
59857957 AAGCGGAGGCTGCAGCGAGAG
1 AAGCAGAGGCAGAAGCGAGGG
59857978 AAGCAGA-GCAGA
1 AAGCAGAGGCAGA
59857990 GCAAAAAGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
20 3 0.06
21 44 0.94
ACGTcount: A:0.33, C:0.17, G:0.47, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCAGAAGCGAGGG
Found at i:59858390 original size:42 final size:42
Alignment explanation
Indices: 59858282--59858419 Score: 179
Period size: 42 Copynumber: 3.2 Consensus size: 42
59858272 CCAAAATAGT
* *
59858282 GGCGTTTTTGTATAAAAGCGCCACTAAAGAACATGGTCTTTAGC
1 GGCGTTTTT-T-TTAAAGCGCCGCTAAAGAACATGGTCTTTAGC
* * **
59858326 GGCGTTTTTTTTACAAACGCCGCGAAAGAACATATTCTTTAGC
1 GGCGTTTTTTTTA-AAGCGCCGCTAAAGAACATGGTCTTTAGC
59858369 GGCGTTTTTTTCT-AAGCGCCGCTAAAGAACATGGTCTTTAGC
1 GGCGTTTTTTT-TAAAGCGCCGCTAAAGAACATGGTCTTTAGC
59858411 GGCGTTTTT
1 GGCGTTTTT
59858420 GTTTGTAAAC
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
42 36 0.44
43 36 0.44
44 10 0.12
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (42 bp):
GGCGTTTTTTTTAAAGCGCCGCTAAAGAACATGGTCTTTAGC
Found at i:59859062 original size:20 final size:20
Alignment explanation
Indices: 59859009--59859078 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
59858999 GTATTTTTCA
59859009 AAATAAAAATAAAA-ATAAATT
1 AAAT-AAAATAAAATAT-AATT
* * *
59859030 -AATTAATTAAAATGT-ATT
1 AAATAAAATAAAATATAATT
59859048 ACAATAAAATAAAATATAATT
1 A-AATAAAATAAAATATAATT
59859069 AAATAAAATA
1 AAATAAAATA
59859079 GTTTAAAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 7 0.18
20 25 0.64
21 4 0.10
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.30
Consensus pattern (20 bp):
AAATAAAATAAAATATAATT
Found at i:59861018 original size:3 final size:3
Alignment explanation
Indices: 59861010--59861069 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
59861000 TAATTTCATG
59861010 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
59861058 TAA TAA TAA TAA
1 TAA TAA TAA TAA
59861070 CAACAAGAAC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:59862665 original size:50 final size:50
Alignment explanation
Indices: 59862611--59862705 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 50
59862601 TCTATATTTG
* * *
59862611 GCTCATAAGAGCTTCCTGA-TATACAGCTCGTATGAGCTTCCCGTTACTTA
1 GCTCACAAGAGCTTCCT-ATTATACAGCTCGGAAGAGCTTCCCGTTACTTA
* **
59862661 GCTCACATGAGCTTCCTATTATATGGCTCGGAAGAGCTTCCCGTT
1 GCTCACAAGAGCTTCCTATTATACAGCTCGGAAGAGCTTCCCGTT
59862706 TACATGCTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
49 1 0.03
50 37 0.97
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (50 bp):
GCTCACAAGAGCTTCCTATTATACAGCTCGGAAGAGCTTCCCGTTACTTA
Found at i:59874128 original size:30 final size:31
Alignment explanation
Indices: 59874094--59874195 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
59874084 TAAAAAATAA
*
59874094 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
59874124 AAATTTCATTTTGACCCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
59874154 AAATTTCACTTAGACCCCTAAAC-TTTCAT-T
1 AAATTTCATTTTGACCCCTAAACTTTTC-TCT
59874184 AAATTTCATTTT
1 AAATTTCATTTT
59874196 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.06
30 57 0.92
31 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAACTTTTCTCT
Found at i:59874779 original size:14 final size:13
Alignment explanation
Indices: 59874756--59874814 Score: 70
Period size: 12 Copynumber: 4.7 Consensus size: 13
59874746 GCTTTGAGAC
*
59874756 AAGAAGAAGAGAAG
1 AAGAAAAAGA-AAG
59874770 AAGAAAAAGAAAG
1 AAGAAAAAGAAAG
*
59874783 AA-AAAAAGAGA-
1 AAGAAAAAGAAAG
59874794 AAGAAAAAGAAAG
1 AAGAAAAAGAAAG
59874807 AA-AAAAAG
1 AAGAAAAAG
59874815 TAATTAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
11 2 0.05
12 22 0.55
13 7 0.17
14 9 0.22
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AAGAAAAAGAAAG
Found at i:59874785 original size:10 final size:10
Alignment explanation
Indices: 59874760--59874811 Score: 54
Period size: 10 Copynumber: 5.1 Consensus size: 10
59874750 TGAGACAAGA
*
59874760 AGAAGAGAAGA
1 AGAA-AGAAAA
59874771 AGAAA-AAGAA
1 AGAAAGAA-AA
59874781 AGAAA-AAAA
1 AGAAAGAAAA
59874790 GAGAAAGAAAA
1 -AGAAAGAAAA
59874801 AGAAAGAAAA
1 AGAAAGAAAA
59874811 A
1 A
59874812 AAGTAATTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
9 4 0.11
10 25 0.68
11 8 0.22
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (10 bp):
AGAAAGAAAA
Found at i:59874823 original size:11 final size:11
Alignment explanation
Indices: 59874809--59874835 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
59874799 AAAGAAAGAA
59874809 AAAAAGTAATT
1 AAAAAGTAATT
59874820 AAAAAGTAATT
1 AAAAAGTAATT
59874831 AAAAA
1 AAAAA
59874836 ATAAAAACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.22
Consensus pattern (11 bp):
AAAAAGTAATT
Found at i:59875473 original size:38 final size:37
Alignment explanation
Indices: 59875422--59875749 Score: 206
Period size: 36 Copynumber: 9.1 Consensus size: 37
59875412 TCGCGTTTTC
* * *
59875422 AAAATTCTAGTGTTTCAAAAATTTTCTTGTTTTCAGAA
1 AAAATTTTCGTGTTTCAAAAATTTTCGTGTTTTCA-AA
* * * *
59875460 AAAATTTTCGTGTTTTATAAATTTCCGTATTTTCAAA
1 AAAATTTTCGTGTTTCAAAAATTTTCGTGTTTTCAAA
** *
59875497 AAAATCAT-GTCTTTCAAAAATTTTCGTGTTTTCAAAA
1 AAAATTTTCGTGTTTCAAAAATTTTCGTGTTTTC-AAA
*** * * **
59875534 AAAATGACCGTGTTTCAAAAATTTCCATG-TTAAAAA
1 AAAATTTTCGTGTTTCAAAAATTTTCGTGTTTTCAAA
* *
59875570 AAAATCTTCGTATTTTCAAAAAATTTTCGTG-TTTC--A
1 AAAATTTTCGT-GTTTC-AAAAATTTTCGTGTTTTCAAA
59875606 AAAATTTTCGTGTTTTCAAAAA-TTTCG-GTGTTTC--A
1 AAAATTTTCGTG-TTTCAAAAATTTTCGTGT-TTTCAAA
** *
59875641 AGGATTTTCGTGTTTTCAAAAA-CTTCGGTGATTTT-AAA
1 AAAATTTTCGTG-TTTCAAAAATTTTC-GTG-TTTTCAAA
* *
59875679 AAAA--ATCGT-TTTCTAAAAAATTTCCGTG-TTTC--A
1 AAAATTTTCGTGTTTC--AAAAATTTTCGTGTTTTCAAA
*
59875712 AAAATTTTCGTGTTTTAAAAATTTTCGTGTTTT-AAA
1 AAAATTTTCGTGTTTCAAAAATTTTCGTGTTTTCAAA
59875748 AA
1 AA
59875750 TTCTCGTATT
Statistics
Matches: 226, Mismatches: 42, Indels: 46
0.72 0.13 0.15
Matches are distributed among these distances:
33 6 0.03
34 24 0.11
35 40 0.18
36 65 0.29
37 29 0.13
38 62 0.27
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.43
Consensus pattern (37 bp):
AAAATTTTCGTGTTTCAAAAATTTTCGTGTTTTCAAA
Found at i:59875529 original size:18 final size:18
Alignment explanation
Indices: 59875416--59875898 Score: 239
Period size: 17 Copynumber: 27.6 Consensus size: 18
59875406 GAAAAATCGC
* *
59875416 GTTTTC-AAAATTCTAGT
1 GTTTTCAAAAATTTTCGT
*
59875433 G-TTTCAAAAATTTTCTT
1 GTTTTCAAAAATTTTCGT
59875450 GTTTTCAGAAAAAATTTTCGT
1 GTTTTC---AAAAATTTTCGT
* *
59875471 GTTTT-ATAAATTTCCGT
1 GTTTTCAAAAATTTTCGT
* ** *
59875488 ATTTTCAAAAA-AATCAT
1 GTTTTCAAAAATTTTCGT
59875505 GTCTTTCAAAAATTTTCGT
1 GT-TTTCAAAAATTTTCGT
***
59875524 GTTTTCAAAAAAAATGACCGT
1 GTTTTC---AAAAATTTTCGT
* *
59875545 G-TTTCAAAAATTTCCAT
1 GTTTTCAAAAATTTTCGT
*** *
59875562 GTTAAAAAAAAATCTTCGT
1 GTT-TTCAAAAATTTTCGT
*
59875581 ATTTTCAAAAAATTTTCGT
1 GTTTTC-AAAAATTTTCGT
59875600 G-TTTCAAAAATTTTCGT
1 GTTTTCAAAAATTTTCGT
59875617 GTTTTCAAAAA-TTTCG-
1 GTTTTCAAAAATTTTCGT
**
59875633 GTGTTTCAAGGATTTTCGT
1 GT-TTTCAAAAATTTTCGT
*
59875652 GTTTTCAAAAA-CTTCGGT
1 GTTTTCAAAAATTTTC-GT
***
59875670 GATTTT-AAAAAAAATCGT
1 G-TTTTCAAAAATTTTCGT
* *
59875688 -TTTCTAAAAAATTTCCGT
1 GTTT-TCAAAAATTTTCGT
59875706 G-TTTCAAAAATTTTCGT
1 GTTTTCAAAAATTTTCGT
59875723 GTTTT-AAAAATTTTCGT
1 GTTTTCAAAAATTTTCGT
*
59875740 GTTTT-AAAAATTCTCGT
1 GTTTTCAAAAATTTTCGT
*
59875757 ATTTT---AAATTTT--T
1 GTTTTCAAAAATTTTCGT
*** **
59875770 -TTAAGAAAAAAATT-GT
1 GTTTTCAAAAATTTTCGT
* * *
59875786 G-TTTCAAAAAATGTCTT
1 GTTTTCAAAAATTTTCGT
*
59875803 GTTTT-AAAAATTCTCGT
1 GTTTTCAAAAATTTTCGT
* *
59875820 G-TTTCAAAAAAATGTCGT
1 GTTTTC-AAAAATTTTCGT
59875838 GTTTT-AAAAATTTTCGT
1 GTTTTCAAAAATTTTCGT
*** *
59875855 GTTTTTTGAAATTTCCGT
1 GTTTTCAAAAATTTTCGT
*
59875873 G-TTT-AAAAATTCTCGT
1 GTTTTCAAAAATTTTCGT
59875889 GTTTT-AAAAA
1 GTTTTCAAAAA
59875899 AAAACTTTCA
Statistics
Matches: 355, Mismatches: 74, Indels: 74
0.71 0.15 0.15
Matches are distributed among these distances:
12 2 0.01
13 1 0.00
15 11 0.03
16 30 0.08
17 149 0.42
18 94 0.26
19 38 0.11
20 4 0.01
21 26 0.07
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (18 bp):
GTTTTCAAAAATTTTCGT
Found at i:59875536 original size:74 final size:74
Alignment explanation
Indices: 59875434--59875631 Score: 210
Period size: 74 Copynumber: 2.7 Consensus size: 74
59875424 AATTCTAGTG
* * **
59875434 TTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCGTGTTTTATAAATTTCCGTAT-TTTCAAAA
1 TTTCAAAAATTTTCGTGTTTTCA-AAAAAATTTTCGTGTTTTAAAAATTTCC--ATGTTAAAAAA
59875498 AAATCAT-GT-C
63 AAATCATCGTAC
*** *
59875508 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAATTTCCATGTTAAAAAAAA
1 TTTCAAAAATTTTCGTGTTTTC-AAAAAAATTTTCGTGTTTTAAAAATTTCCATGTTAAAAAAAA
* *
59875573 ATCTTCGTAT
65 ATCATCGTAC
59875583 TTTCAAAAAATTTTCGTG-TTTC--AAAAATTTTCGTGTTTTCAAAAATTTC
1 TTTC-AAAAATTTTCGTGTTTTCAAAAAAATTTTCGTGTTTT-AAAAATTTC
59875632 GGTGTTTCAA
Statistics
Matches: 104, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
72 15 0.14
73 21 0.20
74 46 0.44
75 9 0.09
76 13 0.12
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.43
Consensus pattern (74 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAATTTTCGTGTTTTAAAAATTTCCATGTTAAAAAAAAA
TCATCGTAC
Found at i:59875637 original size:35 final size:34
Alignment explanation
Indices: 59875459--59875899 Score: 219
Period size: 35 Copynumber: 12.7 Consensus size: 34
59875449 TGTTTTCAGA
* *
59875459 AAAAATTTTCGTGTTTT-ATAAATTTCCGTATTTT
1 AAAAATTTTCGTGTTTTCAAAAATTT-CGTGTTTT
** *
59875493 CAAAAA-AATCATGTCTTTCAAAAATTTTCGTGTTTT
1 -AAAAATTTTCGTGT-TTTCAAAAA-TTTCGTGTTTT
*** * **
59875529 CAAAAAAAATGACCGTG-TTTCAAAAATTTCCATGTTAAAA
1 ----AAAAATTTTCGTGTTTTCAAAAATTT-CGTGTT--TT
* * *
59875569 AAAAATCTTCGTATTTTCAAAAAATTTTCGTGTTTC
1 AAAAATTTTCGTGTTTTC-AAAAA-TTTCGTGTTTT
*
59875605 AAAAATTTTCGTGTTTTCAAAAATTTCGGTGTTTC
1 AAAAATTTTCGTGTTTTCAAAAATTTC-GTGTTTT
** *
59875640 AAGGATTTTCGTGTTTTCAAAAACTTCGGTGATTTT
1 AAAAATTTTCGTGTTTTCAAAAATTTC-GTG-TTTT
*** * *
59875676 AAAAAAAATCGT-TTTCTAAAAAATTTCCGTGTTTC
1 AAAAATTTTCGTGTTT-TCAAAAATTT-CGTGTTTT
59875711 AAAAATTTTCGTGTTTT-AAAAATTTTCGTGTTTT
1 AAAAATTTTCGTGTTTTCAAAAA-TTTCGTGTTTT
* * *
59875745 AAAAATTCTCGTATTTT---AAATTT--T-TTTAAG
1 AAAAATTTTCGTGTTTTCAAAAATTTCGTGTTT--T
** * *
59875775 AAAAAAATT-GTG-TTTCAAAAAATGTCTTGTTTT
1 AAAAATTTTCGTGTTTTC-AAAAATTTCGTGTTTT
* *
59875808 AAAAATTCTCGTG-TTTCAAAAAAATGTCGTGTTTT
1 AAAAATTTTCGTGTTTTC--AAAAATTTCGTGTTTT
***
59875843 AAAAATTTTCGTGTTTTTTGAAATTTCCGTG-TTT
1 AAAAATTTTCGTGTTTTCAAAAATTT-CGTGTTTT
* *
59875877 AAAAATTCTCGTGTTTTAAAAAA
1 AAAAATTTTCGTGTTTTCAAAAA
59875900 AAACTTTCAT
Statistics
Matches: 315, Mismatches: 59, Indels: 65
0.72 0.13 0.15
Matches are distributed among these distances:
28 6 0.02
29 3 0.01
30 6 0.02
31 3 0.01
32 8 0.03
33 6 0.02
34 71 0.23
35 102 0.32
36 63 0.20
37 11 0.03
38 24 0.08
39 8 0.03
40 4 0.01
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (34 bp):
AAAAATTTTCGTGTTTTCAAAAATTTCGTGTTTT
Found at i:59877283 original size:20 final size:20
Alignment explanation
Indices: 59877251--59877288 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
59877241 ATGAAGGGTT
*
59877251 TTAAAAACATAAATAAATAA
1 TTAAAAACATAAAAAAATAA
59877271 TTAAAAA-ATTAAAAAAAT
1 TTAAAAACA-TAAAAAAAT
59877289 GAAGTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.06
20 15 0.94
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (20 bp):
TTAAAAACATAAAAAAATAA
Found at i:59877635 original size:16 final size:16
Alignment explanation
Indices: 59877594--59877625 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
59877584 TTAATTATAT
59877594 ATAAAAAATATAATAA
1 ATAAAAAATATAATAA
59877610 ATAAAAAATATAATAA
1 ATAAAAAATATAATAA
59877626 TACAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (16 bp):
ATAAAAAATATAATAA
Found at i:59878675 original size:28 final size:30
Alignment explanation
Indices: 59878644--59878710 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 30
59878634 GACTTCTGGT
*
59878644 TTAGGCTAGTTGGG-CTAGGGTA-TTGGGC
1 TTAGGCTAGTTGGGTCTAGGCTAGTTGGGC
* * *
59878672 TTAGGCTAATTGGGTTTAGGCTAGTTGGGT
1 TTAGGCTAGTTGGGTCTAGGCTAGTTGGGC
59878702 TTAGGCTAG
1 TTAGGCTAG
59878711 GTTAGAGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 13 0.41
29 6 0.19
30 13 0.41
ACGTcount: A:0.16, C:0.09, G:0.39, T:0.36
Consensus pattern (30 bp):
TTAGGCTAGTTGGGTCTAGGCTAGTTGGGC
Found at i:59878710 original size:15 final size:15
Alignment explanation
Indices: 59878641--59878710 Score: 90
Period size: 15 Copynumber: 4.8 Consensus size: 15
59878631 TCTGACTTCT
59878641 GGTTTAGGCTAGTTG
1 GGTTTAGGCTAGTTG
* *
59878656 GG-CTAGGGTA-TTG
1 GGTTTAGGCTAGTTG
* *
59878669 GGCTTAGGCTAATTG
1 GGTTTAGGCTAGTTG
59878684 GGTTTAGGCTAGTTG
1 GGTTTAGGCTAGTTG
59878699 GGTTTAGGCTAG
1 GGTTTAGGCTAG
59878711 GTTAGAGTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
13 5 0.11
14 12 0.26
15 30 0.64
ACGTcount: A:0.16, C:0.09, G:0.40, T:0.36
Consensus pattern (15 bp):
GGTTTAGGCTAGTTG
Found at i:59886858 original size:15 final size:15
Alignment explanation
Indices: 59886834--59886871 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
59886824 AAACTCTAGC
59886834 CTAGCCTAAACCCAA
1 CTAGCCTAAACCCAA
*
59886849 CTAGCTTAAACCCAA
1 CTAGCCTAAACCCAA
*
59886864 TTAGCCTA
1 CTAGCCTA
59886872 GCCTCATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.34, G:0.08, T:0.21
Consensus pattern (15 bp):
CTAGCCTAAACCCAA
Found at i:59889695 original size:45 final size:46
Alignment explanation
Indices: 59889628--59889751 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
59889618 CATATGACCT
*
59889628 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
59889671 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
59889717 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
59889752 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:59889734 original size:46 final size:45
Alignment explanation
Indices: 59889628--59889862 Score: 207
Period size: 37 Copynumber: 5.8 Consensus size: 45
59889618 CATATGACCT
*
59889628 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
59889671 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
59889717 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
59889754 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
59889791 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
59889828 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
59889863 CACTTATCAC
Statistics
Matches: 177, Mismatches: 7, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
37 101 0.57
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.05
44 6 0.03
45 21 0.12
46 34 0.19
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:59889755 original size:37 final size:37
Alignment explanation
Indices: 59889713--59889889 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
59889703 AGCTGAAGCT
* **
59889713 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
59889750 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
59889787 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
59889824 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
59889861 GCCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
59889890 AGTACTCAAA
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:59895260 original size:19 final size:19
Alignment explanation
Indices: 59895236--59895276 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
59895226 TGATTTATTC
*
59895236 TAAGATTTATCTATCTAAA
1 TAAGATTTATCTACCTAAA
59895255 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
59895274 TAA
1 TAA
59895277 CTTTAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.39
Consensus pattern (19 bp):
TAAGATTTATCTACCTAAA
Found at i:59901378 original size:11 final size:11
Alignment explanation
Indices: 59901280--59901379 Score: 56
Period size: 11 Copynumber: 8.7 Consensus size: 11
59901270 GTTTTCTCAC
*
59901280 TATTTTATTAC
1 TATTTTATTAT
* *
59901291 CATTTCATTAT
1 TATTTTATTAT
* ** *
59901302 TATATTGCTAC
1 TATTTTATTAT
*
59901313 TATTTTATTGT
1 TATTTTATTAT
*
59901324 TATTATTTAGATAT
1 TA-T-TTTA-TTAT
* * *
59901338 TATATAATTGT
1 TATTTTATTAT
59901349 TATTTTATTAT
1 TATTTTATTAT
59901360 TAATTTTATTAT
1 T-ATTTTATTAT
59901372 TATTTTAT
1 TATTTTAT
59901380 AAGCATTTGC
Statistics
Matches: 62, Mismatches: 23, Indels: 8
0.67 0.25 0.09
Matches are distributed among these distances:
11 39 0.63
12 14 0.23
13 5 0.08
14 4 0.06
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:59902281 original size:24 final size:22
Alignment explanation
Indices: 59902214--59902281 Score: 54
Period size: 24 Copynumber: 3.1 Consensus size: 22
59902204 TATATCCAAT
59902214 TTTTTAAATTAATAGAAAATGATA
1 TTTTTAAATTAATAG-AAAT-ATA
* *
59902238 TTTTAAAATT-AT---AATCTA
1 TTTTTAAATTAATAGAAATATA
59902256 TTTTTAAATTAATAGAAGATAATA
1 TTTTTAAATTAATAGAA-AT-ATA
59902280 TT
1 TT
59902282 AAACTTATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
18 11 0.32
19 5 0.15
22 1 0.03
23 4 0.12
24 13 0.38
ACGTcount: A:0.47, C:0.01, G:0.06, T:0.46
Consensus pattern (22 bp):
TTTTTAAATTAATAGAAATATA
Found at i:59902299 original size:42 final size:42
Alignment explanation
Indices: 59902214--59902302 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
59902204 TATATCCAAT
* *
59902214 TTTTTAAATTAATAGAAAATGATATTTTAAAATTATAATCTA
1 TTTTTAAATTAATAGAAAATGATATATTAAAATTATAAACTA
* *
59902256 TTTTTAAATTAATAGAAGAT-A-ATATTAAACTTATAAAAACTA
1 TTTTTAAATTAATAGAAAATGATATATTAAAATTAT--AAACTA
59902298 TTTTT
1 TTTTT
59902303 TTCACGCTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 11 0.27
41 1 0.02
42 29 0.71
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.45
Consensus pattern (42 bp):
TTTTTAAATTAATAGAAAATGATATATTAAAATTATAAACTA
Found at i:59903875 original size:25 final size:25
Alignment explanation
Indices: 59903847--59903926 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 25
59903837 AGGTTATCCC
59903847 AAAAATTAGCCACTACA-GCTTTTCA
1 AAAAATTAGCCACTA-AGGCTTTTCA
* * *
59903872 AAAAATTTGCCATTAAGGTTTTTCA
1 AAAAATTAGCCACTAAGGCTTTTCA
* *
59903897 GAAGATTAGCCACTAAGGCTTTTCA
1 AAAAATTAGCCACTAAGGCTTTTCA
*
59903922 GAAAA
1 AAAAA
59903927 CTTACCGACT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 1 0.02
25 44 0.98
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (25 bp):
AAAAATTAGCCACTAAGGCTTTTCA
Found at i:59908074 original size:5 final size:5
Alignment explanation
Indices: 59908064--59908089 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
59908054 TGAGCATTCG
59908064 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
59908090 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:59909096 original size:9 final size:9
Alignment explanation
Indices: 59909082--59909118 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
59909072 TATAGTTTGA
59909082 TATTCGAAT
1 TATTCGAAT
59909091 TATTCGAAT
1 TATTCGAAT
*
59909100 TATTCGAGT
1 TATTCGAAT
59909109 TATTCGAAT
1 TATTCGAAT
59909118 T
1 T
59909119 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:59909193 original size:18 final size:18
Alignment explanation
Indices: 59909170--59909204 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
59909160 ATTCAAGTTG
59909170 ATTCGAATAACTCGATTA
1 ATTCGAATAACTCGATTA
59909188 ATTCGAATAACTCGATT
1 ATTCGAATAACTCGATT
59909205 CGTTTAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.34
Consensus pattern (18 bp):
ATTCGAATAACTCGATTA
Found at i:59910646 original size:21 final size:21
Alignment explanation
Indices: 59910620--59910671 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
59910610 ATTGAGGCTT
*
59910620 AAGGATTGAGATAGATGGTTG
1 AAGGATTGAGACAGATGGTTG
*
59910641 AAGGATAGAGACAGATGGTTG
1 AAGGATTGAGACAGATGGTTG
*
59910662 GAGGA-TGAGA
1 AAGGATTGAGA
59910672 AAGAGATCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.37, C:0.02, G:0.40, T:0.21
Consensus pattern (21 bp):
AAGGATTGAGACAGATGGTTG
Found at i:59914609 original size:45 final size:44
Alignment explanation
Indices: 59914541--59914693 Score: 155
Period size: 45 Copynumber: 3.4 Consensus size: 44
59914531 AGCACCACCC
* * * *
59914541 TTATAGTCAATGATACTCGGTGGAATCAACACATAGCAACTACCT
1 TTATAATCAATG-TACCCAGTGGAATCAACACACAGCAACTACCT
* * * *
59914586 TCATAATCAATAGTACCCAGTGGAATCAGCACACAGTAACCACCT
1 TTATAATCAAT-GTACCCAGTGGAATCAACACACAGCAACTACCT
* *
59914631 TTATAATCAATGATACTCGGTGGAATCAACACACAGCAA-TCACCT
1 TTATAATCAATG-TACCCAGTGGAATCAACACACAGCAACT-ACCT
*
59914676 TTATAATTAATGGTACCC
1 TTATAATCAAT-GTACCC
59914694 GGTACACGTA
Statistics
Matches: 88, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
44 1 0.01
45 85 0.97
46 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (44 bp):
TTATAATCAATGTACCCAGTGGAATCAACACACAGCAACTACCT
Found at i:59914651 original size:90 final size:88
Alignment explanation
Indices: 59914517--59914693 Score: 248
Period size: 90 Copynumber: 2.0 Consensus size: 88
59914507 CAGATACACG
* * * *
59914517 GTGGATCAGCACATAGCACCACCCTTATAGTCAATGATACTCGGTGGAATCAACACATAGCAA-C
1 GTGGATCAGCACACAGAACCACCCTTATAATCAATGATACTCGGTGGAATCAACACACAGCAATC
59914581 TACCTTCATAATCAATAGTACCCA
66 -ACCTTCATAATCAATAGTACCCA
*
59914605 GTGGAATCAGCACACAGTAACCACCTTTATAATCAATGATACTCGGTGGAATCAACACACAGCAA
1 GTGG-ATCAGCACACAG-AACCACCCTTATAATCAATGATACTCGGTGGAATCAACACACAGCAA
* * *
59914670 TCACCTTTATAATTAATGGTACCC
64 TCACCTTCATAATCAATAGTACCC
59914694 GGTACACGTA
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
88 4 0.05
89 11 0.14
90 62 0.79
91 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.24
Consensus pattern (88 bp):
GTGGATCAGCACACAGAACCACCCTTATAATCAATGATACTCGGTGGAATCAACACACAGCAATC
ACCTTCATAATCAATAGTACCCA
Found at i:59921466 original size:9 final size:9
Alignment explanation
Indices: 59921452--59921488 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
59921442 TATAGTTTGA
59921452 TATTCGAAT
1 TATTCGAAT
59921461 TATTCGAAT
1 TATTCGAAT
* *
59921470 TATTTGAGT
1 TATTCGAAT
59921479 TATTCGAAT
1 TATTCGAAT
59921488 T
1 T
59921489 TGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:59921558 original size:9 final size:9
Alignment explanation
Indices: 59921541--59921571 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
59921531 TCAAGTTGAT
59921541 TCGAATAAC
1 TCGAATAAC
*
59921550 TCGATTAAC
1 TCGAATAAC
59921559 TCGAATAAC
1 TCGAATAAC
59921568 TCGA
1 TCGA
59921572 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:59926345 original size:15 final size:16
Alignment explanation
Indices: 59926319--59926348 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
59926309 CTTGAAAGTA
59926319 AGATTAAGATTAGATG
1 AGATTAAGATTAGATG
59926335 AGATT-AGATTAGAT
1 AGATTAAGATTAGAT
59926349 TAATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (16 bp):
AGATTAAGATTAGATG
Found at i:59926730 original size:9 final size:9
Alignment explanation
Indices: 59926711--59926764 Score: 63
Period size: 9 Copynumber: 5.9 Consensus size: 9
59926701 TAAAAAAACC
*
59926711 TAAATTATA
1 TAAAATATA
*
59926720 TAACATATA
1 TAAAATATA
59926729 TAAAATATA
1 TAAAATATA
*
59926738 TATATATATA
1 TA-AAATATA
59926748 TAAAATATA
1 TAAAATATA
*
59926757 TAACATAT
1 TAAAATAT
59926765 TCACTTTTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
9 30 0.79
10 8 0.21
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (9 bp):
TAAAATATA
Found at i:59926746 original size:17 final size:17
Alignment explanation
Indices: 59926724--59926758 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
59926714 ATTATATAAC
59926724 ATATATA-AAATATATAT
1 ATATATATAAA-ATATAT
59926741 ATATATATAAAATATAT
1 ATATATATAAAATATAT
59926758 A
1 A
59926759 ACATATTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.82
18 3 0.18
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATATATAAAATATAT
Found at i:59927066 original size:22 final size:22
Alignment explanation
Indices: 59927009--59927067 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
59926999 AAAAAAAACT
* *
59927009 ATTGTTTTGCTGCTGTTTTTCC
1 ATTGTTTTGCTGCTATTTTCCC
* *
59927031 ACTGTTTTACTGCTATTTTCCC
1 ATTGTTTTGCTGCTATTTTCCC
*
59927053 ATTGTTTTGTTGCTA
1 ATTGTTTTGCTGCTA
59927068 CTATTTTGTT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.10, C:0.19, G:0.15, T:0.56
Consensus pattern (22 bp):
ATTGTTTTGCTGCTATTTTCCC
Found at i:59935193 original size:26 final size:26
Alignment explanation
Indices: 59935136--59935186 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
59935126 CTTGATATAT
*
59935136 GGCTCTTCGTGAGCTTCCCGATTAAA
1 GGCTCTTCGTGAGCTTCCCAATTAAA
* *
59935162 GGCTCTTTGTGAGCTTCCTAATTAA
1 GGCTCTTCGTGAGCTTCCCAATTAA
59935187 TTGCTCTCCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCAATTAAA
Found at i:59935296 original size:24 final size:24
Alignment explanation
Indices: 59935245--59935297 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
59935235 TGGCTATCCG
* *
59935245 GAGCTTCCCGTTAATGGCTCTTCA
1 GAGCTACCCGTTAATGGCTCTGCA
*
59935269 GAGCTACCCGTTATTGGCTC-GCA
1 GAGCTACCCGTTAATGGCTCTGCA
59935292 TGAGCT
1 -GAGCT
59935298 TCTTGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 23 0.92
ACGTcount: A:0.17, C:0.28, G:0.25, T:0.30
Consensus pattern (24 bp):
GAGCTACCCGTTAATGGCTCTGCA
Found at i:59936072 original size:18 final size:18
Alignment explanation
Indices: 59936037--59936074 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
59936027 AGAAAAGAAT
*
59936037 AAAAAGAAAAACGGTTCA
1 AAAAAGAAAAACGATTCA
59936055 AAAAAGAGAAAA-GATTCA
1 AAAAAGA-AAAACGATTCA
59936073 AA
1 AA
59936075 GGTTGCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.66, C:0.08, G:0.16, T:0.11
Consensus pattern (18 bp):
AAAAAGAAAAACGATTCA
Found at i:59936952 original size:7 final size:7
Alignment explanation
Indices: 59936937--59936970 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
59936927 ACTTACATAC
59936937 TTATATT
1 TTATATT
*
59936944 TTATTTT
1 TTATATT
59936951 TTATATT
1 TTATATT
*
59936958 TTATAAT
1 TTATATT
59936965 TTATAT
1 TTATAT
59936971 ATCTATATCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTATATT
Found at i:59937247 original size:4 final size:4
Alignment explanation
Indices: 59937238--59937283 Score: 51
Period size: 4 Copynumber: 12.0 Consensus size: 4
59937228 TTTTATTTTC
* * *
59937238 ATTT ATTT ATTT ATTT ATAT GTCT A-TT -TTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
59937284 GTTATTGTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
3 3 0.09
4 32 0.91
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (4 bp):
ATTT
Found at i:59937268 original size:26 final size:25
Alignment explanation
Indices: 59937239--59937289 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
59937229 TTTATTTTCA
59937239 TTTATTTATTTATTTATATGTCTATT
1 TTTATTTATTTATTTATATGT-TATT
*
59937265 TTTATTTATTTATTTATTTGTTATT
1 TTTATTTATTTATTTATATGTTATT
59937290 GTATATACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.73
Consensus pattern (25 bp):
TTTATTTATTTATTTATATGTTATT
Found at i:59937602 original size:109 final size:109
Alignment explanation
Indices: 59937411--59937825 Score: 604
Period size: 109 Copynumber: 3.8 Consensus size: 109
59937401 CAAAAGAAAT
* * *
59937411 TTTTTTAAATGAGGCAATGTTTAGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
1 TTTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
*
59937476 TCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAA
66 TCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTCAAAA
* * *
59937520 TTTTTAAAATAAGACAATGTTTTGCGTTTGGACATTCGAGAAAACATGTCCTAAGGTGCTGGGTG
1 TTTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
* *
59937585 TCGATTTTTCTCGTTCAACCAAATGGCTTTATATCATCTTCAGAAA
66 TCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCT-TTCA-AAA
*
59937631 -TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
1 TTTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
* *
59937695 TCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAA
66 TCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTCAAAA
* * * * *
59937739 ATTTCAAAATAAGGCAATGTTTTTGCGTTTGAAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGT
1 TTTTTAAAATAAGGCAATG-TTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGT
* *
59937803 TTCGA--TTTCTCGTTTAACCAAAT
65 GTCGATTTTTCTCGTTCAACCAAAT
59937826 TGCCAAATAT
Statistics
Matches: 278, Mismatches: 24, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
107 17 0.06
108 3 0.01
109 139 0.50
110 116 0.42
111 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (109 bp):
TTTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
TCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTCAAAA
Found at i:59937801 original size:219 final size:217
Alignment explanation
Indices: 59937412--59937825 Score: 641
Period size: 219 Copynumber: 1.9 Consensus size: 217
59937402 AAAAGAAATT
* * *
59937412 TTTTTAAATGAGGCAATGTTTAGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATATTTAGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* * * * *
59937477 CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAATTTTTAAAATAAGACAATGTTT
66 CGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTTCAAAATAAGACAATGTTT
* * *
59937542 TGCGTTTGGACATTCGAGAAAACATGTCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAA
131 TGCGTTTGAAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGA--TTTCTCGTTCAACCAA
59937607 ATGGCTTTATATCATCTTCAGAAA
194 ATGGCTTTATATCATCTTCAGAAA
*
59937631 TTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATATTTAGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
*
59937696 CGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTTCAAAATAAGGCAATGTTT
66 CGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTTCAAAATAAGACAATG-TT
* * * *
59937761 TTGCGTTTGAAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTTTCGATTTCTCGTTTAACCAAA
130 TTGCGTTTGAAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTCTCGTTCAACCAAA
59937825 T
195 T
59937826 TGCCAAATAT
Statistics
Matches: 177, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
217 17 0.10
219 141 0.80
220 19 0.11
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (217 bp):
TTTTAAAATAAGGCAATATTTAGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
CGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTTCAAAATAAGACAATGTTT
TGCGTTTGAAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTCTCGTTCAACCAAAT
GGCTTTATATCATCTTCAGAAA
Found at i:59941530 original size:51 final size:50
Alignment explanation
Indices: 59941341--59941534 Score: 153
Period size: 51 Copynumber: 3.9 Consensus size: 50
59941331 ATGTGAAAGT
* *
59941341 GAAAGTGAT-GGTCACGTGTGTAGTGCTATGTGCAGGCTACTACATGTAC
1 GAAAGTGATAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTAC
* ** * * * * *
59941390 CAAAAAGATAGGTCGCTTGTGTAGTACTGTGTGCAGGCTACTATGCGTACC
1 GAAAGTGATAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-C
* * * * * *
59941441 GGATAGCT--TCGATCACGTGTGTAGTACTATATACAGGCTACTACGTGTATT
1 -GAAAG-TGATAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-C
* *
59941492 GAATAGTGAT-GGTCACATGTGTAGTACTATGTGTAGGCTACTA
1 GAA-AGTGATAGGTCACGTGTGTAGTACTATGTGCAGGCTACTA
59941535 TGTGAACCCG
Statistics
Matches: 107, Mismatches: 31, Indels: 12
0.71 0.21 0.08
Matches are distributed among these distances:
49 6 0.06
50 35 0.33
51 63 0.59
52 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (50 bp):
GAAAGTGATAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTAC
Found at i:59941632 original size:42 final size:42
Alignment explanation
Indices: 59941542--59941799 Score: 306
Period size: 42 Copynumber: 6.1 Consensus size: 42
59941532 CTATGTGAAC
* *
59941542 CCGTATCATTGATTATAAGGTGGTTGCTAAATGCTGATTCCA
1 CCGTATCCTTGATTATAAGGTGGTTGCTAAGTGCTGATTCCA
* * * * *
59941584 CTGTATCCTTGATTGTGAAAGAGGTTGCTATGTGCTGATTCC-
1 CCGTATCCTTGATTAT-AAGGTGGTTGCTAAGTGCTGATTCCA
*
59941626 CCGTATCCTTGATTATAAGGTGGTTGCTAAATGCTGATTCCA
1 CCGTATCCTTGATTATAAGGTGGTTGCTAAGTGCTGATTCCA
* *
59941668 CCGTATCCTTGATTGTGAAAGG-GGTTGCTATGTGCTGATTCC-
1 CCGTATCCTTGATTAT--AAGGTGGTTGCTAAGTGCTGATTCCA
* * *
59941710 CCATATCATTGATTATAAGGTGGTTCCTAAGTGCTGATTCCA
1 CCGTATCCTTGATTATAAGGTGGTTGCTAAGTGCTGATTCCA
* * *
59941752 CCGGGATCCTTTGAATATGAGGTGGTTGCTAAGTGCTGATTCCA
1 CC-GTATCC-TTGATTATAAGGTGGTTGCTAAGTGCTGATTCCA
59941796 CCGT
1 CCGT
59941800 GTAATGGTTA
Statistics
Matches: 180, Mismatches: 28, Indels: 15
0.81 0.13 0.07
Matches are distributed among these distances:
40 4 0.02
41 39 0.22
42 57 0.32
43 43 0.24
44 37 0.21
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (42 bp):
CCGTATCCTTGATTATAAGGTGGTTGCTAAGTGCTGATTCCA
Found at i:59941682 original size:84 final size:84
Alignment explanation
Indices: 59941541--59941799 Score: 376
Period size: 84 Copynumber: 3.1 Consensus size: 84
59941531 ACTATGTGAA
*
59941541 CCCGTATCATTGATTATAAGGTGGTTGCTAAATGCTGATTCCACTGTATCCTTGATTGTGAAAGA
1 CCCGTATCATTGATTATAAGGTGGTTGCTAAATGCTGATTCCACCGTATCCTTGATTGTGAAAGA
59941606 GGTTGCTATGTGCTGATTC
66 GGTTGCTATGTGCTGATTC
* *
59941625 CCCGTATCCTTGATTATAAGGTGGTTGCTAAATGCTGATTCCACCGTATCCTTGATTGTGAAAGG
1 CCCGTATCATTGATTATAAGGTGGTTGCTAAATGCTGATTCCACCGTATCCTTGATTGTGAAAGA
59941690 GGTTGCTATGTGCTGATTC
66 GGTTGCTATGTGCTGATTC
* * * * * * *
59941709 CCCATATCATTGATTATAAGGTGGTTCCTAAGTGCTGATTCCACCGGGATCCTTTGAATATG-AG
1 CCCGTATCATTGATTATAAGGTGGTTGCTAAATGCTGATTCCACC-GTATCC-TTGATTGTGAAA
* *
59941773 GTGGTTGCTAAGTGCTGATTC
64 GAGGTTGCTATGTGCTGATTC
59941794 CACCGT
1 C-CCGT
59941800 GTAATGGTTA
Statistics
Matches: 158, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
84 122 0.77
85 26 0.16
86 10 0.06
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (84 bp):
CCCGTATCATTGATTATAAGGTGGTTGCTAAATGCTGATTCCACCGTATCCTTGATTGTGAAAGA
GGTTGCTATGTGCTGATTC
Found at i:59941813 original size:44 final size:44
Alignment explanation
Indices: 59941606--59941798 Score: 127
Period size: 44 Copynumber: 4.5 Consensus size: 44
59941596 TTGTGAAAGA
* * * * *
59941606 GGTTGCTATGTGCTGATTCC-CC-GTATCC-TTGATTATAAGGT
1 GGTTCCTAAGTGCTGATTCCACCGGAATCCGTTGAATATGAGGT
* * * * *
59941647 GGTTGCTAAATGCTGATTCCACC-GTATCC-TTGATTGTGAAAGG-
1 GGTTCCTAAGTGCTGATTCCACCGGAATCCGTTGAATATG--AGGT
* * * * *
59941690 GGTTGCTATGTGCTGATTCC-CC--ATAT-CATTGATTATAAGGT
1 GGTTCCTAAGTGCTGATTCCACCGGA-ATCCGTTGAATATGAGGT
* *
59941731 GGTTCCTAAGTGCTGATTCCACCGGGATCCTTTGAATATGAGGT
1 GGTTCCTAAGTGCTGATTCCACCGGAATCCGTTGAATATGAGGT
*
59941775 GGTTGCTAAGTGCTGATTCCACCG
1 GGTTCCTAAGTGCTGATTCCACCG
59941799 TGTAATGGTT
Statistics
Matches: 126, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
40 3 0.02
41 37 0.29
42 28 0.22
43 20 0.16
44 38 0.30
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (44 bp):
GGTTCCTAAGTGCTGATTCCACCGGAATCCGTTGAATATGAGGT
Found at i:59949074 original size:26 final size:26
Alignment explanation
Indices: 59949025--59949075 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
59949015 CCCGATATAT
*
59949025 GGCTCTTCGTGAGCTTCCCGATTAAA
1 GGCTCTTCGTGAGCTTCCCAATTAAA
* *
59949051 GGCTCTTTGTGAGCTTCCTAATTAA
1 GGCTCTTCGTGAGCTTCCCAATTAA
59949076 TGTCTTTCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCAATTAAA
Found at i:59949140 original size:25 final size:25
Alignment explanation
Indices: 59949112--59949176 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 25
59949102 CTTCCCTGAA
* *
59949112 CTTCCCGGTATATGGCTATTCGGAG
1 CTTCCCGTTATATGGCTATTCAGAG
*
59949137 CTTCCCGTTA-ATGGCTCTTCAGAG
1 CTTCCCGTTATATGGCTATTCAGAG
*
59949161 CTACCCGTTAT-TGGCT
1 CTTCCCGTTATATGGCT
59949177 CGCATGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 26 0.74
25 9 0.26
ACGTcount: A:0.15, C:0.28, G:0.23, T:0.34
Consensus pattern (25 bp):
CTTCCCGTTATATGGCTATTCAGAG
Found at i:59949234 original size:25 final size:25
Alignment explanation
Indices: 59949204--59949270 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
59949194 TATGGCTCTT
* *
59949204 ATAAGCTTCCTGTTATGCAGCCCAG
1 ATAAGCTTCCTGTTATACAGCCCAC
*
59949229 ATAAGCTT-CTCGTTATACAGCTCAC
1 ATAAGCTTCCT-GTTATACAGCCCAC
*
59949254 ATGAGCTTCCTGTTATA
1 ATAAGCTTCCTGTTATA
59949271 TGGCTCGAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 2 0.06
25 32 0.89
26 2 0.06
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (25 bp):
ATAAGCTTCCTGTTATACAGCCCAC
Found at i:59949276 original size:25 final size:25
Alignment explanation
Indices: 59949134--59949276 Score: 71
Period size: 24 Copynumber: 5.8 Consensus size: 25
59949124 TGGCTATTCG
* *
59949134 GAGCTTCCCGTTA-ATGGCTCTTCA-
1 GAGCTTCCTGTTATATGGCTC-ACAT
* * *
59949158 GAGCTACCCGTTAT-TGGCTCGCAT
1 GAGCTTCCTGTTATATGGCTCACAT
* * **
59949182 GAGCTTCTTG-AATATGGCTCTTAT
1 GAGCTTCCTGTTATATGGCTCACAT
* *** * *
59949206 AAGCTTCCTGTTATGCAGCCCAGAT
1 GAGCTTCCTGTTATATGGCTCACAT
* **
59949231 AAGCTT-CTCGTTATACAGCTCACAT
1 GAGCTTCCT-GTTATATGGCTCACAT
59949256 GAGCTTCCTGTTATATGGCTC
1 GAGCTTCCTGTTATATGGCTC
59949277 GAGAGAGGGC
Statistics
Matches: 90, Mismatches: 23, Indels: 11
0.73 0.19 0.09
Matches are distributed among these distances:
23 4 0.04
24 43 0.48
25 41 0.46
26 2 0.02
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (25 bp):
GAGCTTCCTGTTATATGGCTCACAT
Found at i:59951537 original size:20 final size:20
Alignment explanation
Indices: 59951512--59951555 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
59951502 TAATATGGTA
59951512 AGAAAAGTGGAGAATTCTCT
1 AGAAAAGTGGAGAATTCTCT
59951532 AGAAAAGTGGAGAATTCTCT
1 AGAAAAGTGGAGAATTCTCT
59951552 AGAA
1 AGAA
59951556 TGTGTTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.43, C:0.09, G:0.25, T:0.23
Consensus pattern (20 bp):
AGAAAAGTGGAGAATTCTCT
Found at i:59954323 original size:30 final size:30
Alignment explanation
Indices: 59954289--59954414 Score: 135
Period size: 30 Copynumber: 4.2 Consensus size: 30
59954279 AACAGTGAGT
* *
59954289 TACACAGCCTGGAAACACGGCCGTGCAACC
1 TACACGGCCTGGAAACACGGCCGTGTAACC
* * *
59954319 TACACGGCTTGGCAACATGGCCGTGTAACC
1 TACACGGCCTGGAAACACGGCCGTGTAACC
* ** * *
59954349 TACACGACCTGGCGACACGGTCATGTAACC
1 TACACGGCCTGGAAACACGGCCGTGTAACC
* * *
59954379 TACACGGCTTGGAGACACGGTCGTGTAACC
1 TACACGGCCTGGAAACACGGCCGTGTAACC
59954409 TACACG
1 TACACG
59954415 AACTAGACAC
Statistics
Matches: 81, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 81 1.00
ACGTcount: A:0.26, C:0.32, G:0.25, T:0.17
Consensus pattern (30 bp):
TACACGGCCTGGAAACACGGCCGTGTAACC
Found at i:59954434 original size:60 final size:60
Alignment explanation
Indices: 59954315--59954434 Score: 147
Period size: 60 Copynumber: 2.0 Consensus size: 60
59954305 ACGGCCGTGC
* * * *
59954315 AACCTACACGGCTTGGCAACATGGCCGTGTAACCTACACGACCTGGCGACACGGTCATGT
1 AACCTACACGGCTTGGCAACACGGCCGTGTAACCTACACGAACTGACGACAAGGTCATGT
*
59954375 AACCTACACGGCTTGG-AGACACGGTCGTGTAACCTACACGAACTAGAC-ACATAGG-CATGT
1 AACCTACACGGCTTGGCA-ACACGGCCGTGTAACCTACACGAACT-GACGACA-AGGTCATGT
59954435 CCTTCGCCGT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
59 1 0.02
60 47 0.90
61 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.18
Consensus pattern (60 bp):
AACCTACACGGCTTGGCAACACGGCCGTGTAACCTACACGAACTGACGACAAGGTCATGT
Found at i:59955247 original size:17 final size:17
Alignment explanation
Indices: 59955209--59955257 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
59955199 TATCTGTTCA
59955209 TTTTTATTAT-TTT-TT
1 TTTTTATTATGTTTATT
* *
59955224 TTCTTATTCTGTTTATT
1 TTTTTATTATGTTTATT
59955241 TTTTTATTATGTTTATT
1 TTTTTATTATGTTTATT
59955258 CCTGGTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 8 0.29
16 3 0.11
17 17 0.61
ACGTcount: A:0.14, C:0.04, G:0.04, T:0.78
Consensus pattern (17 bp):
TTTTTATTATGTTTATT
Found at i:59955997 original size:13 final size:13
Alignment explanation
Indices: 59955979--59956004 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59955969 ATCGAGCCCA
59955979 CATATATGGAGCT
1 CATATATGGAGCT
59955992 CATATATGGAGCT
1 CATATATGGAGCT
59956005 TACTTTGGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
CATATATGGAGCT
Found at i:59956958 original size:23 final size:23
Alignment explanation
Indices: 59956927--59956975 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 23
59956917 CCATTGAGTC
59956927 TTTTTGTTT-TGTTTTATT-TTAT
1 TTTTTGTTTATG-TTTATTGTTAT
59956949 TTTTATGTTTATGTTTATTGTTAT
1 TTTT-TGTTTATGTTTATTGTTAT
59956973 TTT
1 TTT
59956976 CTTAAACTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.17
23 11 0.46
24 9 0.38
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (23 bp):
TTTTTGTTTATGTTTATTGTTAT
Found at i:59956965 original size:18 final size:17
Alignment explanation
Indices: 59956939--59956972 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
59956929 TTTGTTTTGT
*
59956939 TTTATTTTATTTTTATG
1 TTTATTTTATTGTTATG
59956956 TTTATGTTTATTGTTAT
1 TTTAT-TTTATTGTTAT
59956973 TTTCTTAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.74
Consensus pattern (17 bp):
TTTATTTTATTGTTATG
Found at i:59961510 original size:30 final size:30
Alignment explanation
Indices: 59961453--59961537 Score: 82
Period size: 30 Copynumber: 2.9 Consensus size: 30
59961443 GGGTAAATAA
* **
59961453 GTTGCTCACACAAGTTGGCATTATATCAGG
1 GTTGCTCACACAAGCTAACATTATATCAGG
* **
59961483 GTTGCTCACACAAGCTAACATTTTATCAAA
1 GTTGCTCACACAAGCTAACATTATATCAGG
** *
59961513 GTTTTTTACACAAGCTAAC-TTATAT
1 GTTGCTCACACAAGCTAACATTATAT
59961538 TAGGTTACCC
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
29 5 0.11
30 40 0.89
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (30 bp):
GTTGCTCACACAAGCTAACATTATATCAGG
Found at i:59964227 original size:18 final size:18
Alignment explanation
Indices: 59964188--59964399 Score: 203
Period size: 18 Copynumber: 11.8 Consensus size: 18
59964178 TTTCGGTGGT
* *
59964188 GGTTCTTTTGG-TTTCTCA
1 GGTTCTTTAGGCTTT-TCG
*
59964206 GGTTCCTTAGGCTTTTCG
1 GGTTCTTTAGGCTTTTCG
* *
59964224 GGTTCTTTCGGTTTTTCG
1 GGTTCTTTAGGCTTTTCG
*
59964242 GGTTGTTTAGG-TTTCTCG
1 GGTTCTTTAGGCTTT-TCG
* *
59964260 GGTTCTTTGGGTTTTTCG
1 GGTTCTTTAGGCTTTTCG
* *
59964278 GGTTCTTTTGGTTTTTCG
1 GGTTCTTTAGGCTTTTCG
*
59964296 GGTGCTTTAGGCTTTTCG
1 GGTTCTTTAGGCTTTTCG
* * *
59964314 GGTTCTTTTGGTTTTTCT
1 GGTTCTTTAGGCTTTTCG
* * *
59964332 GGTACTTTAGGCTTCTCT
1 GGTTCTTTAGGCTTTTCG
* * *
59964350 GGTTCTTTGGGTTTTTCA
1 GGTTCTTTAGGCTTTTCG
*
59964368 GGTTCTTTGGGCTTTTCG
1 GGTTCTTTAGGCTTTTCG
59964386 GGTTCTTTAGGCTT
1 GGTTCTTTAGGCTT
59964400 CTCAGGCTCC
Statistics
Matches: 161, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
17 3 0.02
18 152 0.94
19 6 0.04
ACGTcount: A:0.04, C:0.15, G:0.28, T:0.53
Consensus pattern (18 bp):
GGTTCTTTAGGCTTTTCG
Found at i:59964264 original size:54 final size:54
Alignment explanation
Indices: 59964188--59964396 Score: 231
Period size: 54 Copynumber: 3.9 Consensus size: 54
59964178 TTTCGGTGGT
* * * *
59964188 GGTTCTTTTGGTTTCTCAGGTTCCTTAGGCTTTTCGGGTTCTTTCGGTTTTTCG
1 GGTTCTTTAGGTTTCTCAGGTTCTTTGGGCTTTTCGGGTTCTTTAGGTTTTTCG
* * * *
59964242 GGTTGTTTAGGTTTCTCGGGTTCTTTGGGTTTTTCGGGTTCTTTTGGTTTTTCG
1 GGTTCTTTAGGTTTCTCAGGTTCTTTGGGCTTTTCGGGTTCTTTAGGTTTTTCG
* * * * * * * * *
59964296 GGTGCTTTAGGCTTT-TCGGGTTCTTTTGGTTTTTCTGGTACTTTAGGCTTCTCT
1 GGTTCTTTAGG-TTTCTCAGGTTCTTTGGGCTTTTCGGGTTCTTTAGGTTTTTCG
* *
59964350 GGTTCTTTGGGTTTTTCAGGTTCTTTGGGCTTTTCGGGTTCTTTAGG
1 GGTTCTTTAGGTTTCTCAGGTTCTTTGGGCTTTTCGGGTTCTTTAGG
59964397 CTTCTCAGGC
Statistics
Matches: 130, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
53 3 0.02
54 124 0.95
55 3 0.02
ACGTcount: A:0.04, C:0.15, G:0.29, T:0.53
Consensus pattern (54 bp):
GGTTCTTTAGGTTTCTCAGGTTCTTTGGGCTTTTCGGGTTCTTTAGGTTTTTCG
Found at i:59968781 original size:28 final size:29
Alignment explanation
Indices: 59968745--59968805 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
59968735 AATAGAATTT
*
59968745 TTTTTAAAATT-TTTATAAATATTTTG-AA
1 TTTTAAAAATTATTT-TAAATATTTTGTAA
* *
59968773 TTTTAAAAATTATTTTGATTATTTTGTAA
1 TTTTAAAAATTATTTTAAATATTTTGTAA
59968802 TTTT
1 TTTT
59968806 TGTTAAGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (29 bp):
TTTTAAAAATTATTTTAAATATTTTGTAA
Found at i:59968782 original size:18 final size:19
Alignment explanation
Indices: 59968755--59968790 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
59968745 TTTTTAAAAT
*
59968755 TTTTATAAA-TATTTTGAA
1 TTTTAAAAATTATTTTGAA
59968773 TTTTAAAAATTATTTTGA
1 TTTTAAAAATTATTTTGA
59968791 TTATTTTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:59968889 original size:9 final size:9
Alignment explanation
Indices: 59968875--59968904 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
59968865 ATACTAATCT
59968875 ATTATTCGA
1 ATTATTCGA
59968884 ATTATTCGA
1 ATTATTCGA
*
59968893 GTTATTCGA
1 ATTATTCGA
59968902 ATT
1 ATT
59968905 GTAAAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.47
Consensus pattern (9 bp):
ATTATTCGA
Found at i:59970597 original size:3 final size:3
Alignment explanation
Indices: 59970571--59970622 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
59970561 ATTAATAAAT
* * * * *
59970571 TTA TTC TTA TTG TTA TCA TCA TTA TTA TTA TTA TTA TTA TTA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
59970619 TTA T
1 TTA T
59970623 ATGCTCATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:59970946 original size:43 final size:43
Alignment explanation
Indices: 59970885--59970982 Score: 178
Period size: 43 Copynumber: 2.3 Consensus size: 43
59970875 ACCGATCTTT
*
59970885 AACGCCGCTAAAGAACATGATCTTTAACGGTGCTTTTATCACA
1 AACGCCGCTAAAGAACATGATCTTTAACGGCGCTTTTATCACA
*
59970928 AACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACA
1 AACGCCGCTAAAGAACATGATCTTTAACGGCGCTTTTATCACA
59970971 AACGCCGCTAAA
1 AACGCCGCTAAA
59970983 AGTACGATTC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (43 bp):
AACGCCGCTAAAGAACATGATCTTTAACGGCGCTTTTATCACA
Found at i:59976814 original size:16 final size:17
Alignment explanation
Indices: 59976793--59976825 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
59976783 ATGTCTAGGT
59976793 AAATT-ATTAATTGAGA
1 AAATTAATTAATTGAGA
59976809 AAATTAGATTAATTGAG
1 AAATTA-ATTAATTGAG
59976826 GGGTTAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
18 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
AAATTAATTAATTGAGA
Found at i:59977909 original size:46 final size:45
Alignment explanation
Indices: 59977829--59978255 Score: 188
Period size: 46 Copynumber: 9.3 Consensus size: 45
59977819 AGTACTTCTA
* *
59977829 ATCAAGTGACAAAGT-GATAAGTGGT-AGCTTTAGCTACACTTATCTG
1 ATCAAGTGAC-AAGTGGA-AAGTGATAAG-TATAGCTACACTTATCTG
*
59977875 ATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTG
1 ATCAAGTGACAAGTGGAAAGTGATAAGT-ATA------GCTACACTTATCTG
* * *
59977927 ATCAAGTGAAAAAGT-GATAAGTGAT-AGCT-TCGGCTATACTTATCTG
1 ATCAAGTG-ACAAGTGGA-AAGTGATAAG-TAT-AGCTACACTTATCTG
59977973 ATCAAGTGACAAAGT-GATAAGTGAT-AGCT-TCAGCTACACTTATCTG
1 ATCAAGTGAC-AAGTGGA-AAGTGATAAG-TAT-AGCTACACTTATCTG
*
59978019 ATCAAGTGACAAAATGGAAAGTGATAAGTGATAGCTTCGGTTACACTTATCTG
1 ATCAAGTGAC-AAGTGGAAAGTGATAAGT-ATAG---C---TACACTTATCTG
* *
59978072 ATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATAC-G
1 ATCAAGTGACAAGTGGAAAGTGATAAGT-ATA------GCTACACTTAT-CTG
* *
59978124 ATCAAGAGACAAAGT-GATAAGTGAT-AGCTTTAGCTACACTTATCTG
1 ATCAAGTGAC-AAGTGGA-AAGTGATAAG-TATAGCTACACTTATCTG
* *
59978170 ATCAAGAGAC------AAAGTGATAAG--TGGCTACACTTATCTG
1 ATCAAGTGACAAGTGGAAAGTGATAAGTATAGCTACACTTATCTG
* *
59978207 ATCAAGAGAC------AAAGTGATAAG--TGGCTACACTTATCTG
1 ATCAAGTGACAAGTGGAAAGTGATAAGTATAGCTACACTTATCTG
*
59978244 ATCAAGAGACAA
1 ATCAAGTGACAA
59978256 AGTGATAAGT
Statistics
Matches: 326, Mismatches: 17, Indels: 83
0.77 0.04 0.19
Matches are distributed among these distances:
37 62 0.19
39 7 0.02
40 3 0.01
45 13 0.04
46 114 0.35
47 6 0.02
48 1 0.00
50 1 0.00
51 1 0.00
52 68 0.21
53 48 0.15
55 1 0.00
58 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (45 bp):
ATCAAGTGACAAGTGGAAAGTGATAAGTATAGCTACACTTATCTG
Found at i:59977995 original size:53 final size:50
Alignment explanation
Indices: 59977839--59978181 Score: 406
Period size: 46 Copynumber: 7.0 Consensus size: 50
59977829 ATCAAGTGAC
* **
59977839 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA-T-G
* *
59977891 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTG--AA--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAATG
*
59977937 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC----
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAATG
*
59977983 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAAATGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC--AAT-G
*
59978036 AAAGTGATAAGTGATAGCTTCGGTTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA-TG
* *
59978087 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATAC-GATCAAGAGAC----
1 -AAAGTGATAAGTGATAGCTTCGGCTACACTTAT-CTGATCAAGTGACAATG
** *
59978134 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
59978182 AGTGATAAGT
Statistics
Matches: 260, Mismatches: 16, Indels: 34
0.84 0.05 0.11
Matches are distributed among these distances:
45 1 0.00
46 128 0.49
50 2 0.01
51 3 0.01
52 81 0.31
53 45 0.17
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (50 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAATG
Found at i:59978192 original size:151 final size:145
Alignment explanation
Indices: 59977829--59978185 Score: 565
Period size: 151 Copynumber: 2.4 Consensus size: 145
59977819 AGTACTTCTA
*
59977829 ATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGTGGAA
1 ATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGGAA
*
59977893 AGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAAAAAGTGATAAGTGATAGCTTC
66 AGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGATAGCTTC
59977958 GGCTATACTTATCTG
131 GGCTATACTTATCTG
* *
59977973 ATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAAATGGAA
1 ATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGGAA
* *
59978038 AGTGATAAGTGATAGCTTCGGTTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTGAT
66 AGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTG---A---AAAAGTGATAAGTGAT
59978103 AGCTTCGGCTATACTTATAC-G
125 AGCTTCGGCTATACTTAT-CTG
* *
59978124 ATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTG
1 ATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTG
59978186 ATAAGTGGCT
Statistics
Matches: 195, Mismatches: 10, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
144 54 0.28
145 46 0.24
148 1 0.01
151 93 0.48
152 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (145 bp):
ATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGGAA
AGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGATAGCTTC
GGCTATACTTATCTG
Found at i:59978200 original size:37 final size:37
Alignment explanation
Indices: 59978156--59978338 Score: 334
Period size: 37 Copynumber: 5.0 Consensus size: 37
59978146 GATAGCTTTA
59978156 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
59978193 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
59978230 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
59978267 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
59978304 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
59978339 ATCATACGTA
Statistics
Matches: 143, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
35 12 0.08
36 4 0.03
37 127 0.89
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:59980971 original size:110 final size:110
Alignment explanation
Indices: 59980778--59981232 Score: 596
Period size: 110 Copynumber: 4.1 Consensus size: 110
59980768 TATGCATACT
* * *
59980778 AATATCCTTTTAAAAAATTTCAAAATAAGGCAATGCTCTGGGTTTGGAAATTCGAGAAAACGTGC
1 AATATCCTTTTAAAAAATTTCAAAATAAGGCAATGTTTTGTGTTTGGAAATTCGAGAAAACGTGC
59980843 CCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
66 CCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
* *
59980888 AATATCCTTTTAAAAAATTTCAAAATAAGGCAATGTTTTATGTTTGGAAATTCGAGAAATCGTGC
1 AATATCCTTTTAAAAAATTTCAAAATAAGGCAATGTTTTGTGTTTGGAAATTCGAGAAAACGTGC
* *
59980953 CCTAATGTGCTGGGTTTCGATCTTTC-CTGTTCGGCCAAATAGCCA
66 CCTAATGTGCTGGGTTTCGATTTTTCTC-GTTCGACCAAATAGCCA
* **** * *
59980998 AATATCCTCTTCAATTTTTTTTTTCAAAATGAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAAC
1 AATATCCT-TTTAA---AAAATTTCAAAATAAGGCAATGTTTTGTGTTTGGAAATTCGAGAAAAC
*
59981063 ATGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAAT-GACCA
62 GTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAG-CCA
* * *
59981112 AATATCCTTTT-AAAAACTTCAAAATAAAGCAATGTTTTGTGTTTGAAAATTCGAGAAAACGTGC
1 AATATCCTTTTAAAAAATTTCAAAATAAGGCAATGTTTTGTGTTTGGAAATTCGAGAAAACGTGC
*** * * *
59981176 CCTAATGCATTGGATTTCGA--TTTCTCGTTGGACCAAATAGCCG
66 CCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
*
59981219 AATATCCTCTTAAA
1 AATATCCTTTTAAA
59981233 TCTTAATCCA
Statistics
Matches: 299, Mismatches: 37, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
107 29 0.10
108 3 0.01
109 59 0.20
110 109 0.36
111 4 0.01
112 1 0.00
113 3 0.01
114 90 0.30
115 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (110 bp):
AATATCCTTTTAAAAAATTTCAAAATAAGGCAATGTTTTGTGTTTGGAAATTCGAGAAAACGTGC
CCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
Found at i:59982038 original size:3 final size:3
Alignment explanation
Indices: 59982030--59982054 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
59982020 ACCACATGAT
59982030 CCA CCA CCA CCA CCA CCA CCA CCA C
1 CCA CCA CCA CCA CCA CCA CCA CCA C
59982055 AACCCTTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:59982584 original size:6 final size:6
Alignment explanation
Indices: 59982573--59982608 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
59982563 CTTAGGAGGC
59982573 TTATCT TTATCT TTATCT TTATCT TTATCT TTATCT
1 TTATCT TTATCT TTATCT TTATCT TTATCT TTATCT
59982609 GTTGTTTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (6 bp):
TTATCT
Found at i:59983035 original size:16 final size:17
Alignment explanation
Indices: 59983014--59983077 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 17
59983004 AAAAGCATAT
59983014 ATATATATATAT-ACAC
1 ATATATATATATCACAC
59983030 ATATATAT-TATCACAC
1 ATATATATATATCACAC
* *
59983046 TACTATAAATTTATCACAC
1 -A-TATATATATATCACAC
*
59983065 AGATATCATATAT
1 ATATAT-ATATAT
59983078 TTAAATTAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
15 3 0.08
16 12 0.31
17 4 0.10
18 12 0.31
19 8 0.21
ACGTcount: A:0.45, C:0.16, G:0.02, T:0.38
Consensus pattern (17 bp):
ATATATATATATCACAC
Found at i:59984146 original size:18 final size:18
Alignment explanation
Indices: 59984123--59984159 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
59984113 TGAAAAAATT
59984123 TGTATAATAAA-ATTAAAA
1 TGTATAA-AAATATTAAAA
59984141 TGTATAAAAATATTAAAA
1 TGTATAAAAATATTAAAA
59984159 T
1 T
59984160 TAAAGCTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (18 bp):
TGTATAAAAATATTAAAA
Found at i:59992875 original size:152 final size:148
Alignment explanation
Indices: 59992609--59992926 Score: 399
Period size: 152 Copynumber: 2.1 Consensus size: 148
59992599 AGAAAAGTTC
* * ** * *
59992609 TGATTTTTTTT--AAAAAGAGAAAATTTAGATTTTTAAAAATAAAATTTGTTTTTTAGTCATTTT
1 TGATTTTTTTTAAAAAAATAGAAAATTTAGATTCTTAAAAATAAAAAATGTTTTTTAGCCATTTC
* * * * *
59992672 AAAGGAAATTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTCAACTATTTCGGAATAAAAGCTT
66 AAAGGAAATTTTAAA-TTTTAAAAAAAAGTTTTAATTTTTTTCAACCATTTCGAAATAAAACCTT
*
59992737 TGATATTTAAGAAAAACAG
130 TCATATTTAAGAAAAACAG
*
59992756 TGATTTTTTTTAAAAAAATAGAAAGTTTAGATTCTTAAAAATAAAAAAAAATGTTTTTTAGCCAT
1 TGATTTTTTTTAAAAAAATAGAAAATTTAGATTCTTAAAAAT---AAAAAATGTTTTTTAGCCAT
59992821 TTCAAAGGAAATTTTAAA-TTTAAAAAAGAAGTTTTAATTTTTTTTCAACCATTTCGAAATAAAA
63 TTCAAAGGAAATTTTAAATTTTAAAAAA-AAGTTTTAA-TTTTTTTCAACCATTTCGAAATAAAA
* **
59992885 CCTTTCATCTTTAAGAAAAGTAG
126 CCTTTCATATTTAAGAAAAACAG
**
59992908 TGATTTTTTAAAAAAAAAT
1 TGATTTTTTTTAAAAAAAT
59992927 CACATATCCG
Statistics
Matches: 146, Mismatches: 18, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
147 11 0.08
149 26 0.18
150 8 0.05
151 8 0.05
152 93 0.64
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.42
Consensus pattern (148 bp):
TGATTTTTTTTAAAAAAATAGAAAATTTAGATTCTTAAAAATAAAAAATGTTTTTTAGCCATTTC
AAAGGAAATTTTAAATTTTAAAAAAAAGTTTTAATTTTTTTCAACCATTTCGAAATAAAACCTTT
CATATTTAAGAAAAACAG
Found at i:59993240 original size:25 final size:25
Alignment explanation
Indices: 59993171--59993249 Score: 88
Period size: 27 Copynumber: 3.1 Consensus size: 25
59993161 AGATATATGA
* *
59993171 CTCTTCGGAGCTTCCCGATTAAAGG
1 CTCTTCGGAGCTTCTCGATTAATGG
*
59993196 CTCTTTCATGAGCTTCTCGATTAATGG
1 CTC-TTC-GGAGCTTCTCGATTAATGG
* *
59993223 CTCTTCGGAGCTTTTCGA-TATTGG
1 CTCTTCGGAGCTTCTCGATTAATGG
59993247 CTC
1 CTC
59993250 GCTTGAACTT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
24 8 0.17
25 13 0.28
26 6 0.13
27 19 0.41
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (25 bp):
CTCTTCGGAGCTTCTCGATTAATGG
Found at i:59993331 original size:25 final size:25
Alignment explanation
Indices: 59993278--59993332 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
59993268 TGGCTTGTAT
*
59993278 GAGCTTCCCATTAATGGCTCTTCAA
1 GAGCTTCCCATTAATGGCTCTACAA
* *
59993303 -AGCTTCTCTTTACATGGCTC-ACAA
1 GAGCTTCCCATTA-ATGGCTCTACAA
59993327 GAGCTT
1 GAGCTT
59993333 TCCGTTTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCATTAATGGCTCTACAA
Found at i:60000646 original size:24 final size:24
Alignment explanation
Indices: 60000618--60000676 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
60000608 ACAGCTCAAT
*
60000618 AGAGCATCCCGTTATTAGCTC-TC
1 AGAGCATCCCGTTAATAGCTCTTC
*
60000641 ATGAGCTTCCCGTTAATAGCTCTTC
1 A-GAGCATCCCGTTAATAGCTCTTC
60000666 AGAGCATCCCG
1 AGAGCATCCCG
60000677 ATTTGGTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.03
24 27 0.87
25 3 0.10
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.29
Consensus pattern (24 bp):
AGAGCATCCCGTTAATAGCTCTTC
Found at i:60000902 original size:25 final size:24
Alignment explanation
Indices: 60000849--60000907 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 24
60000839 TAGCTCGTAT
*
60000849 GAGCTTCCCGTTAATGGATCTTCGA
1 GAGCTTCCCGTTAATGGA-CTTAGA
60000874 -AGCTTCCCGTTACATGG-CTTAGAA
1 GAGCTTCCCGTTA-ATGGACTTAG-A
60000898 GAGCTTCCCG
1 GAGCTTCCCG
60000908 ATTATATGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
23 4 0.13
24 13 0.43
25 13 0.43
ACGTcount: A:0.20, C:0.27, G:0.24, T:0.29
Consensus pattern (24 bp):
GAGCTTCCCGTTAATGGACTTAGA
Found at i:60001400 original size:28 final size:28
Alignment explanation
Indices: 60001369--60001471 Score: 103
Period size: 28 Copynumber: 3.8 Consensus size: 28
60001359 TTATTTTTTT
60001369 ATTTTT-ATTTTAAAATACTTTTTTTAAA
1 ATTTTTAATTTTAAAATA-TTTTTTTAAA
60001397 ATTTTTTTAATTTT-AAA-ATTTTTTTAAA
1 A--TTTTTAATTTTAAAATATTTTTTTAAA
* *
60001425 A--TTT--TTTTAAAATACTTTTTTAAT
1 ATTTTTAATTTTAAAATATTTTTTTAAA
*
60001449 TTTTTTAATTTTAAAATATTTTT
1 ATTTTTAATTTTAAAATATTTTT
60001472 AAAATACTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
22 4 0.06
23 3 0.05
24 12 0.19
26 3 0.05
28 26 0.42
29 1 0.02
30 8 0.13
31 5 0.08
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (28 bp):
ATTTTTAATTTTAAAATATTTTTTTAAA
Found at i:60001401 original size:11 final size:11
Alignment explanation
Indices: 60001387--60001456 Score: 73
Period size: 11 Copynumber: 6.8 Consensus size: 11
60001377 TTTAAAATAC
60001387 TTTTTTTAAAA
1 TTTTTTTAAAA
60001398 TTTTTTT--AA
1 TTTTTTTAAAA
60001407 ---TTTTAAAA
1 TTTTTTTAAAA
60001415 TTTTTTTAAAA
1 TTTTTTTAAAA
60001426 TTTTTTTAAAA
1 TTTTTTTAAAA
60001437 TACTTTTTT--AA
1 T--TTTTTTAAAA
60001448 TTTTTTTAA
1 TTTTTTTAA
60001457 TTTTAAAATA
Statistics
Matches: 50, Mismatches: 0, Indels: 18
0.74 0.00 0.26
Matches are distributed among these distances:
6 4 0.08
8 2 0.04
9 8 0.16
11 30 0.60
13 6 0.12
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTTTTTAAAA
Found at i:60001410 original size:17 final size:17
Alignment explanation
Indices: 60001390--60001423 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
60001380 AAAATACTTT
60001390 TTTTAAAATTTTTTTAA
1 TTTTAAAATTTTTTTAA
60001407 TTTTAAAATTTTTTTAA
1 TTTTAAAATTTTTTTAA
60001424 AATTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTAAAATTTTTTTAA
Found at i:60001411 original size:50 final size:47
Alignment explanation
Indices: 60001357--60001461 Score: 122
Period size: 50 Copynumber: 2.1 Consensus size: 47
60001347 TAATAAATAT
**
60001357 TTTTATTTTTTT-ATTTTTATTTTAAAATACTTTTTTTAAAATTTTTTTAA
1 TTTTATTTTTTTAAAATTT-TTTTAAAATAC-TTTTTT--AATTTTTTTAA
60001407 TTTTAAAATTTTTTTAAAATTTTTTTAAAATACTTTTTTAATTTTTTTAA
1 TTTT---ATTTTTTTAAAATTTTTTTAAAATACTTTTTTAATTTTTTTAA
60001457 TTTTA
1 TTTTA
60001462 AAATATTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
47 1 0.02
50 19 0.39
52 6 0.12
53 19 0.39
54 4 0.08
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (47 bp):
TTTTATTTTTTTAAAATTTTTTTAAAATACTTTTTTAATTTTTTTAA
Found at i:60001430 original size:39 final size:39
Alignment explanation
Indices: 60001372--60001495 Score: 130
Period size: 39 Copynumber: 3.1 Consensus size: 39
60001362 TTTTTTTATT
*
60001372 TTTATTTTAAAATACTTTTTTTAAA-ATTTTTTTAATTTTAAAA
1 TTTATTTTAAAAT--TTTTTTAAAATA-TTTTTTAATTTT--AA
60001415 TTT-TTTTAAAATTTTTTTAAAATACTTTTTTAATTTT--
1 TTTATTTTAAAATTTTTTTAAAATA-TTTTTTAATTTTAA
*
60001452 TTTAATTTTAAAATATTTTTAAAATACTTTTTTAATTTTAA
1 TTT-ATTTTAAAATTTTTTTAAAATA-TTTTTTAATTTTAA
60001493 TTT
1 TTT
60001496 TAATTTTTAA
Statistics
Matches: 73, Mismatches: 3, Indels: 12
0.83 0.03 0.14
Matches are distributed among these distances:
37 3 0.04
39 33 0.45
40 9 0.12
41 16 0.22
42 9 0.12
43 3 0.04
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (39 bp):
TTTATTTTAAAATTTTTTTAAAATATTTTTTAATTTTAA
Found at i:60001453 original size:8 final size:9
Alignment explanation
Indices: 60001396--60001460 Score: 51
Period size: 9 Copynumber: 6.7 Consensus size: 9
60001386 CTTTTTTTAA
60001396 AATTTTTTT
1 AATTTTTTT
**
60001405 AA-TTTTAA
1 AATTTTTTT
60001413 AATTTTTTT
1 AATTTTTTT
60001422 AAAATTTTTTT
1 --AATTTTTTT
60001433 AAAATACTTTTTT
1 --AAT--TTTTTT
60001446 AATTTTTTT
1 AATTTTTTT
60001455 AATTTT
1 AATTTT
60001461 AAAATATTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
8 6 0.13
9 18 0.38
11 17 0.36
13 6 0.13
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (9 bp):
AATTTTTTT
Found at i:60001509 original size:32 final size:30
Alignment explanation
Indices: 60001429--60001492 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
60001419 TTTAAAATTT
*
60001429 TTTTAAAATACTTTTT-TAAT--TTTTTTAA
1 TTTTAAAATA-TTTTTAAAATACTTTTTTAA
60001457 TTTTAAAATATTTTTAAAATACTTTTTTAA
1 TTTTAAAATATTTTTAAAATACTTTTTTAA
60001487 TTTTAA
1 TTTTAA
60001493 TTTTAATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 5 0.16
28 13 0.41
30 14 0.44
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (30 bp):
TTTTAAAATATTTTTAAAATACTTTTTTAA
Found at i:60001516 original size:32 final size:30
Alignment explanation
Indices: 60001450--60001516 Score: 80
Period size: 32 Copynumber: 2.2 Consensus size: 30
60001440 TTTTTTAATT
**
60001450 TTTTTAATTTTAAAATATTTTTAAAATACT
1 TTTTTAATTTTAAAATATTTTTAAAATAAA
**
60001480 TTTTTAATTTTAATTTTAATTTTTAAAATAAA
1 TTTTTAATTTTAA-AAT-ATTTTTAAAATAAA
60001512 TTTTT
1 TTTTT
60001517 GGTATTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 13 0.42
31 1 0.03
32 17 0.55
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (30 bp):
TTTTTAATTTTAAAATATTTTTAAAATAAA
Found at i:60003223 original size:24 final size:24
Alignment explanation
Indices: 60003178--60003224 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
60003168 TATATATACC
60003178 AATTCAATCAATATAAATTCAATA
1 AATTCAATCAATATAAATTCAATA
60003202 AATTC-ATCACATACTAAA-TCAAT
1 AATTCAATCA-ATA-TAAATTCAAT
60003225 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATATAAATTCAATA
Found at i:60003947 original size:15 final size:14
Alignment explanation
Indices: 60003923--60003952 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
60003913 TCTCTGTTTC
60003923 TTTCTCTATTTCTT
1 TTTCTCTATTTCTT
60003937 TTTCTTCTATTTCTT
1 TTTC-TCTATTTCTT
60003952 T
1 T
60003953 GTTTTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTCTCTATTTCTT
Done.