Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 203 of 230
Found at i:60666436 original size:204 final size:198
Alignment explanation
Indices: 60665780--60666360 Score: 699
Period size: 205 Copynumber: 2.9 Consensus size: 198
60665770 ATATCATTTA
* * * * *
60665780 ATTAATTAATATACATAGATTACATAACTTACATTAATATTATACATAAATTACATAACTTAATG
1 ATTAA-TATTATACATATA-TAAATAACTTACATTAATATAATACATAAATTACATAACTTAATA
* * * * *
60665845 AATTAATATTATACACAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATTA
64 AATTAATAATATACATAACTTAAATTAATATTATACATAAATTACATAAATTAGTTAATTAA-TA
* * *
60665910 GTATATACATAAATTACATAACTTAAATAATTAATATTATACATAACTTACATTAATATTATACA
128 -T-TATACATAACTTACATAAC-T---T-A--CA-ACT-TACATAACTTACATTAATATTATACA
*
60665975 TAA-ATTACATAACATA-
182 TAATA-TACATAACTTAC
* * *
60665991 ATT-A-ATTA-ATAT-TATACATAACTTACATTAATATTATACATAAATTACATAACTTAATAAA
1 ATTAATATTATACATATATAAATAACTTACATTAATATAATACATAAATTACATAACTTAATAAA
* * *
60666052 TTAATATTATACATAACTTACATTAATATTATACATAAATTACATAACTTAGTTAATTAATATTA
66 TTAATAATATACATAACTTAAATTAATATTATACATAAATTACATAAATTAGTTAATTAATATTA
*
60666117 TACATAACTTACATAACTTACAACTTACATAACTTACATTAATATTATACATATTATACATAACT
131 TACATAACTTACATAACTTACAACTTACATAACTTACATTAATATTATACATAATATACATAACT
60666182 TAC
196 TAC
* * *
60666185 ATTAATATTATACATATTATACATAACTTACATTAATATTATACATAAATTACATAACTTAATTA
1 ATTAATATTATACATA-TATAAATAACTTACATTAATATAATACATAAATTACATAACTTAATAA
60666250 ATATACATAA-ATTACATAACTTAATTAATTAATATTATACATAAATTACATAAATTAGTTAATT
65 AT-TA-ATAATA-TACATAACTT-A--AATTAATATTATACATAAATTACATAAATTAGTTAATT
60666314 AATATTATACATAACTTACATAACTTACAACTTACATAACTTACATT
124 AATATTATACATAACTTACATAACTTACAACTTACATAACTTACATT
60666361 TTTTTAATTA
Statistics
Matches: 341, Mismatches: 16, Indels: 33
0.87 0.04 0.08
Matches are distributed among these distances:
193 38 0.11
194 6 0.02
195 2 0.01
196 4 0.01
197 4 0.01
198 1 0.00
199 49 0.14
200 3 0.01
201 14 0.04
202 19 0.06
203 1 0.00
204 85 0.25
205 104 0.30
206 1 0.00
207 3 0.01
208 3 0.01
210 1 0.00
211 3 0.01
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (198 bp):
ATTAATATTATACATATATAAATAACTTACATTAATATAATACATAAATTACATAACTTAATAAA
TTAATAATATACATAACTTAAATTAATATTATACATAAATTACATAAATTAGTTAATTAATATTA
TACATAACTTACATAACTTACAACTTACATAACTTACATTAATATTATACATAATATACATAACT
TAC
Found at i:60666511 original size:25 final size:25
Alignment explanation
Indices: 60666383--60666519 Score: 120
Period size: 25 Copynumber: 5.6 Consensus size: 25
60666373 CGTAAATTAC
* *
60666383 ATAACTTACTTAATTTGCATAATAA
1 ATAACTTACATAATTTACATAATAA
* *
60666408 ATAACTTACATAACTTACATAATAC
1 ATAACTTACATAATTTACATAATAA
* * *
60666433 ATAACTTATATGACTTACATAACT--
1 ATAACTTACATAATTTACATAA-TAA
* * *
60666457 -T-ACATAGCATAATTTTCATAATAC
1 ATAACTTA-CATAATTTACATAATAA
* *
60666481 ACAACTTACATAATTTTCATAATAA
1 ATAACTTACATAATTTACATAATAA
60666506 ATAACTTACATAAT
1 ATAACTTACATAAT
60666520 ACATAACTTA
Statistics
Matches: 91, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
22 5 0.05
23 11 0.12
25 70 0.77
26 5 0.05
ACGTcount: A:0.45, C:0.16, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAACTTACATAATTTACATAATAA
Found at i:60672078 original size:66 final size:66
Alignment explanation
Indices: 60671961--60672128 Score: 230
Period size: 66 Copynumber: 2.5 Consensus size: 66
60671951 CAAATTACAT
* * *
60671961 AACTTAAAGCAGAGGCAACATCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCAA
1 AACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCAA
60672026 C
66 C
* *
60672027 AACTGAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAG-TATGAAGAACTCCAGCA
1 AACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAGCA
*
60672091 GC
65 AC
* * * *
60672093 AGCTTAAAGCAGATGCGGCAGCAAGAGAAGCAGAGG
1 AACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGG
60672129 CGGTAGCGAG
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
66 86 0.96
67 4 0.04
ACGTcount: A:0.42, C:0.18, G:0.28, T:0.12
Consensus pattern (66 bp):
AACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCAA
C
Found at i:60672125 original size:21 final size:21
Alignment explanation
Indices: 60672099--60672211 Score: 82
Period size: 21 Copynumber: 5.4 Consensus size: 21
60672089 CAGCAGCTTA
*
60672099 AAGCAGATGCGGCAGCAAGAG
1 AAGCAGAGGCGGCAGCAAGAG
* *
60672120 AAGCAGAGGCGGTAGCGAGAG
1 AAGCAGAGGCGGCAGCAAGAG
* * * * *
60672141 AAGTATAGGCTGCAGCGAGGG
1 AAGCAGAGGCGGCAGCAAGAG
*** * *
60672162 AAGCAGAGGCTAAAGCGAGGG
1 AAGCAGAGGCGGCAGCAAGAG
* * *
60672183 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCGGCAGCAAGAG
60672204 AAGCAGAG
1 AAGCAGAG
60672212 CAGCGTCAAA
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 78 1.00
ACGTcount: A:0.35, C:0.16, G:0.43, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCAAGAG
Found at i:60672169 original size:42 final size:42
Alignment explanation
Indices: 60672099--60672211 Score: 136
Period size: 42 Copynumber: 2.7 Consensus size: 42
60672089 CAGCAGCTTA
* * * * **
60672099 AAGCAGATGCGGCAGCAAGAGAAGCAGAGGCGGTAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGGGAAGCAGAGGCGAAAGCGAGAG
* * * *
60672141 AAGTATAGGCTGCAGCGAGGGAAGCAGAGGCTAAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGGAAGCAGAGGCGAAAGCGAGAG
60672183 AAGCAGAGGCTGCAGCGAGGGAAGCAGAG
1 AAGCAGAGGCTGCAGCGAGGGAAGCAGAG
60672212 CAGCGTCAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.35, C:0.16, G:0.43, T:0.06
Consensus pattern (42 bp):
AAGCAGAGGCTGCAGCGAGGGAAGCAGAGGCGAAAGCGAGAG
Found at i:60672610 original size:43 final size:43
Alignment explanation
Indices: 60672563--60672770 Score: 204
Period size: 43 Copynumber: 4.8 Consensus size: 43
60672553 AGGTGTTGGC
* * *
60672563 CTTTAGTGGCGTTTTTGGTAAAAGCGCCGCTAAAGATAAGGTT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATAAGGTT
* * *
60672606 CTTTAGCGGCGTTTGTGGAAAAAGCGCCCCTAAAGATCATGG-T
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAT-AAGGTT
* * *
60672649 CTTTCGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGTT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATAAGGTT
** *** * * *
60672692 CTTTAGTAGCGTTTGTGGTCGAAGCGCCGCTATAGATCAGGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATAAGGTT
* * *
60672735 CTTTTGCGGCGTTT-TAGGGAGAAGCACCGCTAAAGA
1 CTTTAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGA
60672771 CCCTAATCTT
Statistics
Matches: 135, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
42 3 0.02
43 129 0.96
44 3 0.02
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATAAGGTT
Found at i:60672661 original size:86 final size:86
Alignment explanation
Indices: 60672570--60672770 Score: 258
Period size: 86 Copynumber: 2.3 Consensus size: 86
60672560 GGCCTTTAGT
* *
60672570 GGCGTTTTTGGTAAAAGCGCCGCTAAAGATAAGGTTCTTTAGCGGCGTTTGTGGAAAAAGCGCCC
1 GGCGTTTTTGGGAAAAGCGCCGCTAAAGATAAGGTTCTTTAGCAGCGTTTGTGGAAAAAGCGCCC
*
60672635 CTAAAGATCATGGTCTTTCGC
66 CTAAAGATCAGGGTCTTTCGC
* * * * *** *
60672656 GGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGTTCTTTAGTAGCGTTTGTGGTCGAAGCGCCG
1 GGCGTTTTTGGGAAAAGCGCCGCTAAAGATAAGGTTCTTTAGCAGCGTTTGTGGAAAAAGCGCCC
* *
60672721 CTATAGATCAGGGTCTTTTGC
66 CTAAAGATCAGGGTCTTTCGC
* * *
60672742 GGCGTTTTAGGGAGAAGCACCGCTAAAGA
1 GGCGTTTTTGGGAAAAGCGCCGCTAAAGA
60672771 CCCTAATCTT
Statistics
Matches: 97, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
86 97 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.27
Consensus pattern (86 bp):
GGCGTTTTTGGGAAAAGCGCCGCTAAAGATAAGGTTCTTTAGCAGCGTTTGTGGAAAAAGCGCCC
CTAAAGATCAGGGTCTTTCGC
Found at i:60672808 original size:43 final size:42
Alignment explanation
Indices: 60672761--60672941 Score: 182
Period size: 43 Copynumber: 4.2 Consensus size: 42
60672751 GGGAGAAGCA
* *
60672761 CCGCTAAAGACCCTAATCTTTAGCGGCACTTGCCGCAAAAACG
1 CCGCTAAAGACCCTAATCTATAGCGGCACTTGCC-CACAAACG
* * *
60672804 CCGCTAAAGACCCTGATCTATAGCGACACTTCGACCACAAACG
1 CCGCTAAAGACCCTAATCTATAGCGGCACTT-GCCCACAAACG
* * * * *
60672847 CCACTAAAGAACCTAATCTTTAGCGGCGCTTTCCCCACAAACG
1 CCGCTAAAGACCCTAATCTATAGCGGCAC-TTGCCCACAAACG
* * * * *
60672890 CCGCAAAAGACCCTGATCTATAGCAGCGCTTCGACCACAAACG
1 CCGCTAAAGACCCTAATCTATAGCGGCACTT-GCCCACAAACG
*
60672933 CCACTAAAG
1 CCGCTAAAG
60672942 GTCTTAGTCT
Statistics
Matches: 112, Mismatches: 23, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
42 2 0.02
43 106 0.95
44 4 0.04
ACGTcount: A:0.32, C:0.34, G:0.17, T:0.17
Consensus pattern (42 bp):
CCGCTAAAGACCCTAATCTATAGCGGCACTTGCCCACAAACG
Found at i:60672854 original size:86 final size:86
Alignment explanation
Indices: 60672764--60672941 Score: 277
Period size: 86 Copynumber: 2.1 Consensus size: 86
60672754 AGAAGCACCG
* * *
60672764 CTAAAGACCCTAATCTTTAGCGGCACTTGCCGCAAAAACGCCGCTAAAGACCCTGATCTATAGC-
1 CTAAAGAACCTAATCTTTAGCGGCACTTGCCCCAAAAACGCCGCAAAAGACCCTGATCTATAGCA
60672828 GACACTTCGACCACAAACGCCA
66 G-CACTTCGACCACAAACGCCA
* * *
60672850 CTAAAGAACCTAATCTTTAGCGGCGCTTTCCCCACAAACGCCGCAAAAGACCCTGATCTATAGCA
1 CTAAAGAACCTAATCTTTAGCGGCACTTGCCCCAAAAACGCCGCAAAAGACCCTGATCTATAGCA
*
60672915 GCGCTTCGACCACAAACGCCA
66 GCACTTCGACCACAAACGCCA
60672936 CTAAAG
1 CTAAAG
60672942 GTCTTAGTCT
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
86 83 0.99
87 1 0.01
ACGTcount: A:0.33, C:0.34, G:0.16, T:0.17
Consensus pattern (86 bp):
CTAAAGAACCTAATCTTTAGCGGCACTTGCCCCAAAAACGCCGCAAAAGACCCTGATCTATAGCA
GCACTTCGACCACAAACGCCA
Found at i:60677343 original size:48 final size:48
Alignment explanation
Indices: 60677207--60677343 Score: 122
Period size: 47 Copynumber: 2.9 Consensus size: 48
60677197 AAGGTGAAAC
* * * *
60677207 TATGTGGTAGTTTATTTGCATTAAT-GTGACACT-TTCACGATTTTGAT
1 TATGTGGTAGTTTATTTGCATT-TTGGTGACATTGTTCACAATATTGAT
* * * * *
60677254 TATGTGGCAGTATATCTACAATTTTGGTGGC-TTG-TCAACAATATTGAT
1 TATGTGGTAGTTTATTTGC-ATTTTGGTGACATTGTTC-ACAATATTGAT
60677302 TAT-TGGTAGTTTATTTGCGATTTTGGTGACATTGTTCACAAT
1 TATGTGGTAGTTTATTTGC-ATTTTGGTGACATTGTTCACAAT
60677344 TTGGTGTGTT
Statistics
Matches: 69, Mismatches: 15, Indels: 11
0.73 0.16 0.12
Matches are distributed among these distances:
47 40 0.58
48 27 0.39
49 2 0.03
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.45
Consensus pattern (48 bp):
TATGTGGTAGTTTATTTGCATTTTGGTGACATTGTTCACAATATTGAT
Found at i:60687128 original size:139 final size:139
Alignment explanation
Indices: 60686878--60687157 Score: 533
Period size: 139 Copynumber: 2.0 Consensus size: 139
60686868 AAAATTATAT
60686878 TCATAAAATTACTTATAAGTCACAACCATACTTTGCTAATGTAAAGAAATTTAAAAACTACATGA
1 TCATAAAATTACTTATAAGTCACAACCATACTTTGCTAATGTAAAGAAATTTAAAAACTACATGA
60686943 TAAGAAACGGTTGTCAACAAAGAACCAAATAAGTCAATAATATATCATATTATCAGTACGAGGAT
66 TAAGAAACGGTTGTCAACAAAGAACCAAATAAGTCAATAATATATCATATTATCAGTACGAGGAT
*
60687008 ATCGCAATA
131 ATCACAATA
* *
60687017 TCATAAAATTACTTTTAAGTCACAGCCATACTTTGCTAATGTAAAGAAATTTAAAAACTACATGA
1 TCATAAAATTACTTATAAGTCACAACCATACTTTGCTAATGTAAAGAAATTTAAAAACTACATGA
60687082 TAAGAAACGGTTGTCAACAAAGAACCAAATAAGTCAATAATATATCATATTATCAGTACGAGGAT
66 TAAGAAACGGTTGTCAACAAAGAACCAAATAAGTCAATAATATATCATATTATCAGTACGAGGAT
60687147 ATCACAATA
131 ATCACAATA
60687156 TC
1 TC
60687158 TTTAAGTAGA
Statistics
Matches: 138, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
139 138 1.00
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.28
Consensus pattern (139 bp):
TCATAAAATTACTTATAAGTCACAACCATACTTTGCTAATGTAAAGAAATTTAAAAACTACATGA
TAAGAAACGGTTGTCAACAAAGAACCAAATAAGTCAATAATATATCATATTATCAGTACGAGGAT
ATCACAATA
Found at i:60699478 original size:26 final size:26
Alignment explanation
Indices: 60699449--60699504 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
60699439 CTTAATAGCC
*
60699449 TAGTGACTTAAA-TAAAATATTTCAAA
1 TAGTGACTTAAATTAAAACA-TTCAAA
* *
60699475 TAGTTATTTAAATTAAAACATTCAAA
1 TAGTGACTTAAATTAAAACATTCAAA
60699501 TAGT
1 TAGT
60699505 TTAATGCTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (26 bp):
TAGTGACTTAAATTAAAACATTCAAA
Found at i:60699505 original size:26 final size:26
Alignment explanation
Indices: 60699456--60699505 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
60699446 GCCTAGTGAC
*
60699456 TTAAATAAAATATTTCAAATAGTTAT
1 TTAAATAAAACATTTCAAATAGTTAT
60699482 TTAAATTAAAACA-TTCAAATAGTT
1 TTAAA-TAAAACATTTCAAATAGTT
60699506 TAATGCTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (26 bp):
TTAAATAAAACATTTCAAATAGTTAT
Found at i:60701816 original size:6 final size:6
Alignment explanation
Indices: 60701796--60701832 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
60701786 TTCATCAATC
*
60701796 TCTGAT TCATGAT TCTGAT TCTGAT TCTTAT TCTGAT
1 TCTGAT TC-TGAT TCTGAT TCTGAT TCTGAT TCTGAT
60701833 ATGTTTGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (6 bp):
TCTGAT
Found at i:60703627 original size:20 final size:20
Alignment explanation
Indices: 60703602--60703639 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
60703592 ACAATTTAAA
60703602 ATATAAATTTATTAATATGT
1 ATATAAATTTATTAATATGT
60703622 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
60703640 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATATAAATTTATTAATATGT
Found at i:60703779 original size:13 final size:14
Alignment explanation
Indices: 60703751--60703787 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
60703741 CCAAAAAAGT
60703751 AAATCATTTTTCAG
1 AAATCATTTTTCAG
60703765 AAATCATTTTT-AG
1 AAATCATTTTTCAG
*
60703778 AAAACATTTT
1 AAATCATTTT
60703788 ATTGGCAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (14 bp):
AAATCATTTTTCAG
Found at i:60707702 original size:34 final size:35
Alignment explanation
Indices: 60707664--60707730 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
60707654 CATTAAAATA
*
60707664 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
60707698 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
60707731 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:60707704 original size:20 final size:20
Alignment explanation
Indices: 60707679--60707718 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
60707669 CGTAAAATGA
*
60707679 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
60707699 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
60707719 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:60707734 original size:14 final size:15
Alignment explanation
Indices: 60707658--60707734 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
60707648 GATTGCCATT
* *
60707658 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
60707672 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
60707686 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
60707706 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
60707721 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
60707735 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:60710575 original size:40 final size:40
Alignment explanation
Indices: 60710471--60710577 Score: 151
Period size: 40 Copynumber: 2.7 Consensus size: 40
60710461 AGCTTTAGTG
* *
60710471 GCATTAGCGGCGCTTTTTAAAAAACGCCGCAATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAATGCCGCAATAGATCGA
* * *
60710511 GCATTAGCGGCACTATTTGAAAAATGCCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAATGCCGCAATAGATCGA
* *
60710551 GCATTAGTGGCGCTTTTTGGAAAATGC
1 GCATTAGCGGCGCTTTTTGAAAAATGC
60710578 TGTAAAAAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAATGCCGCAATAGATCGA
Found at i:60710646 original size:156 final size:154
Alignment explanation
Indices: 60710376--60710697 Score: 473
Period size: 156 Copynumber: 2.1 Consensus size: 154
60710366 GCGCTTCTAA
* *
60710376 AAAAAAGCTGCTATAGATCGAGCATTAGCAGCGCTTTTCGGAAAATGCCGCAAAAAAGTTGAGCA
1 AAAAAAGCCGCTATAGATCGAGCATTAGCAGCGCTTTTCGGAAAATGCCGAAAAAAAGTTGAGCA
* *
60710441 AAACACATCGTTTGTTGTTGAGCTTTAGTGGCATTAGCGGCGCTTTTTAAAAAACGCCGCAATAG
66 AAACACATCGTTTATTGTTGAGCTTTAGTGGCATTAGCGGCGCTTTTTAAAAAACACCGCAATAG
60710506 ATCGAGCATTAGCGGCACTATTTG
131 ATCGAGCATTAGCGGCACTATTTG
* ** * *
60710530 AAAAATGCCGCTATAGATCGAGCATTAGTGGCGCTTTTTGGAAAATGCTGTAAAAAAAGTTGAGC
1 AAAAAAGCCGCTATAGATCGAGCATTAGCAGCGCTTTTCGGAAAATGCCG-AAAAAAAGTTGAGC
* * * *
60710595 AAAACGACGTCGTTTATTGTTGAGCTTTAGTGGCATTAGTGGCTCTTTTTAAAGAACACCGCAAT
65 AAAAC-ACATCGTTTATTGTTGAGCTTTAGTGGCATTAGCGGCGCTTTTTAAAAAACACCGCAAT
* * *
60710660 AGATTGAGCATTAGCGGCGCTTTTTG
129 AGATCGAGCATTAGCGGCACTATTTG
60710686 AAAAAACGCCGC
1 AAAAAA-GCCGC
60710698 AAAAAATTTG
Statistics
Matches: 148, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
154 44 0.30
155 18 0.12
156 81 0.55
157 5 0.03
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (154 bp):
AAAAAAGCCGCTATAGATCGAGCATTAGCAGCGCTTTTCGGAAAATGCCGAAAAAAAGTTGAGCA
AAACACATCGTTTATTGTTGAGCTTTAGTGGCATTAGCGGCGCTTTTTAAAAAACACCGCAATAG
ATCGAGCATTAGCGGCACTATTTG
Found at i:60710715 original size:116 final size:118
Alignment explanation
Indices: 60710537--60710807 Score: 332
Period size: 116 Copynumber: 2.3 Consensus size: 118
60710527 TTGAAAAATG
* * * * * *
60710537 CCGCTATAGATCGAGCATTAGTGGCGCTTTTTG-GAAAATGCTGTAAAAAAAGTTGAGCAAAACG
1 CCGCAATAGATTGAGCATTAGCGGCGCTTTTTGAAAAAACGCCGTAAAAAAAGTTGAGCAAAACG
* * * * * *
60710601 ACGTCGTTTATTGTTGAGCTTTAGTGGCATTAGTGGCTCTTTT-TAAAGAACA
66 ACATCGTTTATTGTTGAGCATTAGTGGAATTAGCGGCGCTTTTGTAAAAAACA
* *
60710653 CCGCAATAGATTGAGCATTAGCGGCGCTTTTTGAAAAAACGCCG-CAAAAAATTTGAGCAAAACG
1 CCGCAATAGATTGAGCATTAGCGGCGCTTTTTGAAAAAACGCCGTAAAAAAAGTTGAGCAAAACG
* **
60710717 ACATCGTTTGTTGTTGAGCATTAGTGGAATTAGCGGCGCTTTTGTAAAAAATG
66 ACATCGTTTATTGTTGAGCATTAGTGGAATTAGCGGCGCTTTTGTAAAAAACA
* * * *
60710770 CCGCAATAGGTTGAGAATTAGCGGTGCTTGTTGAAAAA
1 CCGCAATAGATTGAGCATTAGCGGCGCTTTTTGAAAAA
60710808 CATCGCTATA
Statistics
Matches: 132, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
116 85 0.64
117 47 0.36
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (118 bp):
CCGCAATAGATTGAGCATTAGCGGCGCTTTTTGAAAAAACGCCGTAAAAAAAGTTGAGCAAAACG
ACATCGTTTATTGTTGAGCATTAGTGGAATTAGCGGCGCTTTTGTAAAAAACA
Found at i:60710957 original size:21 final size:22
Alignment explanation
Indices: 60710932--60710999 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
60710922 AATCATTTTA
60710932 TTTTAGGGTTTA-GTATTTAAGG
1 TTTTAGGGTTTATG-ATTTAAGG
** *
60710954 -TTTAATGTTTATGGTTTAAGG
1 TTTTAGGGTTTATGATTTAAGG
* *
60710975 TTTTAGGGTTTATGATATAATG
1 TTTTAGGGTTTATGATTTAAGG
60710997 TTT
1 TTT
60711000 ATTATTTTGG
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
21 16 0.44
22 20 0.56
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (22 bp):
TTTTAGGGTTTATGATTTAAGG
Found at i:60711029 original size:14 final size:14
Alignment explanation
Indices: 60711012--60711064 Score: 72
Period size: 14 Copynumber: 3.8 Consensus size: 14
60711002 TATTTTGGGA
60711012 TTAGAGTTT-TGAGT
1 TTAGAGTTTATG-GT
*
60711026 TTAGGGTTTATGGT
1 TTAGAGTTTATGGT
60711040 TTAGAGTTTATGGT
1 TTAGAGTTTATGGT
*
60711054 TTAGGGTTTAT
1 TTAGAGTTTAT
60711065 TATATTATAG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
14 33 0.94
15 2 0.06
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.51
Consensus pattern (14 bp):
TTAGAGTTTATGGT
Found at i:60711034 original size:7 final size:7
Alignment explanation
Indices: 60711024--60711063 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
60711014 AGAGTTTTGA
60711024 GTTTAGG
1 GTTTAGG
*
60711031 GTTTATG
1 GTTTAGG
*
60711038 GTTTAGA
1 GTTTAGG
*
60711045 GTTTATG
1 GTTTAGG
60711052 GTTTAGG
1 GTTTAGG
60711059 GTTTA
1 GTTTA
60711064 TTATATTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (7 bp):
GTTTAGG
Found at i:60711046 original size:21 final size:21
Alignment explanation
Indices: 60711012--60711063 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
60711002 TATTTTGGGA
* *
60711012 TTAGAGTTTTGAGTTTAGGGT
1 TTAGGGTTTAGAGTTTAGGGT
* *
60711033 TTATGGTTTAGAGTTTATGGT
1 TTAGGGTTTAGAGTTTAGGGT
60711054 TTAGGGTTTA
1 TTAGGGTTTA
60711064 TTATATTATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (21 bp):
TTAGGGTTTAGAGTTTAGGGT
Found at i:60711232 original size:7 final size:7
Alignment explanation
Indices: 60711222--60711381 Score: 78
Period size: 7 Copynumber: 23.1 Consensus size: 7
60711212 GTAATATATA
60711222 TTTAGGG
1 TTTAGGG
60711229 TTTA-GG
1 TTTAGGG
*
60711235 TGTA-GG
1 TTTAGGG
*
60711241 TTTATGG
1 TTTAGGG
60711248 TTT--GG
1 TTTAGGG
* *
60711253 TGTAGTG
1 TTTAGGG
*
60711260 TTTATGG
1 TTTAGGG
*
60711267 TTTATGG
1 TTTAGGG
60711274 TTTAGGG
1 TTTAGGG
*
60711281 TTTAGCG
1 TTTAGGG
*
60711288 TTTAGTG
1 TTTAGGG
**
60711295 TTTATAG
1 TTTAGGG
60711302 TTTAAGGG
1 TTT-AGGG
*
60711310 -TTAGGAA
1 TTTAGG-G
*
60711317 CTTAGGG
1 TTTAGGG
*
60711324 TTTAAGG
1 TTTAGGG
**
60711331 TTTAAAG
1 TTTAGGG
*
60711338 TTTATGG
1 TTTAGGG
60711345 TTTAGGGG
1 TTTA-GGG
*
60711353 TTTATGG
1 TTTAGGG
*
60711360 TTTATGG
1 TTTAGGG
**
60711367 TTTAATG
1 TTTAGGG
60711374 TTTAGGG
1 TTTAGGG
60711381 T
1 T
60711382 CTGATTTTAA
Statistics
Matches: 119, Mismatches: 27, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
5 4 0.03
6 13 0.11
7 89 0.75
8 13 0.11
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (7 bp):
TTTAGGG
Found at i:60711249 original size:19 final size:19
Alignment explanation
Indices: 60711222--60711284 Score: 74
Period size: 19 Copynumber: 3.2 Consensus size: 19
60711212 GTAATATATA
*
60711222 TTTAGGGTTTAGGTGTAGG
1 TTTATGGTTTAGGTGTAGG
60711241 TTTATGGTTT-GGTGTAGTG
1 TTTATGGTTTAGGTGTAG-G
*
60711260 TTTATGGTTTATGGTTTAGGG
1 TTTATGGTTTA-GGTGTA-GG
60711281 TTTA
1 TTTA
60711285 GCGTTTAGTG
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
18 7 0.18
19 20 0.53
21 10 0.26
22 1 0.03
ACGTcount: A:0.14, C:0.00, G:0.35, T:0.51
Consensus pattern (19 bp):
TTTATGGTTTAGGTGTAGG
Found at i:60711276 original size:14 final size:14
Alignment explanation
Indices: 60711222--60711381 Score: 104
Period size: 14 Copynumber: 11.6 Consensus size: 14
60711212 GTAATATATA
60711222 TTTAGGGTTTA-GG
1 TTTAGGGTTTATGG
*
60711235 TGTA-GGTTTATGG
1 TTTAGGGTTTATGG
*
60711248 TTT--GGTGTA-GTG
1 TTTAGGGTTTATG-G
*
60711260 TTTATGGTTTATGG
1 TTTAGGGTTTATGG
60711274 TTTAGGGTTTA-GCG
1 TTTAGGGTTTATG-G
* *
60711288 TTTAGTGTTTATAG
1 TTTAGGGTTTATGG
60711302 TTTAAGGG-TTA-GG
1 TTT-AGGGTTTATGG
* *
60711315 AACTTAGGGTTTAAGG
1 --TTTAGGGTTTATGG
**
60711331 TTTAAAGTTTATGG
1 TTTAGGGTTTATGG
60711345 TTTAGGGGTTTATGG
1 TTTA-GGGTTTATGG
*
60711360 TTTATGGTTTAAT-G
1 TTTAGGGTTT-ATGG
60711374 TTTAGGGT
1 TTTAGGGT
60711382 CTGATTTTAA
Statistics
Matches: 115, Mismatches: 18, Indels: 27
0.72 0.11 0.17
Matches are distributed among these distances:
11 1 0.01
12 15 0.13
13 9 0.08
14 65 0.57
15 23 0.20
16 2 0.02
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (14 bp):
TTTAGGGTTTATGG
Found at i:60711353 original size:29 final size:29
Alignment explanation
Indices: 60711321--60711380 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
60711311 TAGGAACTTA
60711321 GGGTTTAAGGTTTAAAGTTT-ATGGTTTAG
1 GGGTTTAAGGTTTAAAGTTTAAT-GTTTAG
* **
60711350 GGGTTTATGGTTTATGGTTTAATGTTTAG
1 GGGTTTAAGGTTTAAAGTTTAATGTTTAG
60711379 GG
1 GG
60711381 TCTGATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 25 0.93
30 2 0.07
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (29 bp):
GGGTTTAAGGTTTAAAGTTTAATGTTTAG
Found at i:60711356 original size:22 final size:22
Alignment explanation
Indices: 60711329--60711370 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
60711319 TAGGGTTTAA
60711329 GGTTTAAAGTTTATGGTTTAGG
1 GGTTTAAAGTTTATGGTTTAGG
**
60711351 GGTTTATGGTTTATGGTTTA
1 GGTTTAAAGTTTATGGTTTA
60711371 ATGTTTAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (22 bp):
GGTTTAAAGTTTATGGTTTAGG
Found at i:60711362 original size:36 final size:35
Alignment explanation
Indices: 60711266--60711377 Score: 102
Period size: 36 Copynumber: 3.1 Consensus size: 35
60711256 AGTGTTTATG
*
60711266 GTTTATGGTTTA-GGGTTTAGCGTTT-AGTGTTTATA
1 GTTTATGGTTTAGGGGTTTAG-GTTTAAG-GTTTAAA
* * ***
60711301 GTTTAAGGGTTAGGAACTTAGGGTTTAAGGTTTAAA
1 GTTTATGGTTTAGGGGTTTA-GGTTTAAGGTTTAAA
* *
60711337 GTTTATGGTTTAGGGGTTTATGGTTTATGGTTTAAT
1 GTTTATGGTTTAGGGGTTTA-GGTTTAAGGTTTAAA
60711373 GTTTA
1 GTTTA
60711378 GGGTCTGATT
Statistics
Matches: 60, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
35 10 0.17
36 47 0.78
37 3 0.05
ACGTcount: A:0.21, C:0.02, G:0.29, T:0.47
Consensus pattern (35 bp):
GTTTATGGTTTAGGGGTTTAGGTTTAAGGTTTAAA
Found at i:60712566 original size:43 final size:43
Alignment explanation
Indices: 60712512--60712600 Score: 108
Period size: 43 Copynumber: 2.1 Consensus size: 43
60712502 GTTTTTTCAT
* *
60712512 AAACGCCGCTAAAGAAC-GGTACTTTTAGCGGTGTTTGTGATAA
1 AAACACCGCTAAAGAACAGGTAC-TTTAGCGGTGTTTGTGAAAA
* * * *
60712555 AAACACCGCTAAAGATCATGTTCTTTAGTGGTGTTTGTGAAAA
1 AAACACCGCTAAAGAACAGGTACTTTAGCGGTGTTTGTGAAAA
60712598 AAA
1 AAA
60712601 AGCCACTAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 36 0.92
44 3 0.08
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (43 bp):
AAACACCGCTAAAGAACAGGTACTTTAGCGGTGTTTGTGAAAA
Found at i:60712801 original size:43 final size:43
Alignment explanation
Indices: 60712535--60712804 Score: 296
Period size: 43 Copynumber: 6.3 Consensus size: 43
60712525 GAACGGTACT
* * * *
60712535 TTTAGCGGTGTTTGTGATAAAAACACCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* * * ** * *
60712578 TTTAGTGGTGTTTGTGAAAAAAAAGCCACTAACGGTCAT-TCTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGT-TC
* * * *
60712621 TATAGCGGCATTTGTGATAAAAACGCCGCTAAAGGTCATGCTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
60712664 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTT-
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* *
60712706 TTTAGCGGCGTTTGTGGGT-AAAGCGTCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGT-GATAAAAGCGCCGCTAAAGGTCATGTTC
* * *
60712749 TTTAGCGGCGTGTT-TTATAAAAGCGCCACTAAAGGTCCTGTTC
1 TTTAGCGGCGT-TTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
*
60712792 TATAGCGGCGTTT
1 TTTAGCGGCGTTT
60712805 TTTTCACATA
Statistics
Matches: 193, Mismatches: 28, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
42 41 0.21
43 150 0.78
44 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
Found at i:60716749 original size:23 final size:23
Alignment explanation
Indices: 60716717--60716767 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
60716707 AATTTTGTTA
*
60716717 TATATATATACATGCATATATTTT
1 TATATATATACATACATAT-TTTT
60716741 TATA-ATATACATACATATTTTT
1 TATATATATACATACATATTTTT
60716763 TATAT
1 TATAT
60716768 TTTATATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 8 0.32
23 13 0.52
24 4 0.16
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (23 bp):
TATATATATACATACATATTTTT
Found at i:60716794 original size:12 final size:12
Alignment explanation
Indices: 60716777--60716811 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
60716767 TTTTATATTT
*
60716777 TATATACCTATC
1 TATATACATATC
*
60716789 TATATATATATC
1 TATATACATATC
60716801 TATATACATAT
1 TATATACATAT
60716812 TTTTTAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (12 bp):
TATATACATATC
Found at i:60717625 original size:188 final size:186
Alignment explanation
Indices: 60717297--60717670 Score: 448
Period size: 188 Copynumber: 2.0 Consensus size: 186
60717287 AAACGATCTC
* * * * *
60717297 GGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCTTTTTTTTAATCCGAGATAGC
1 GGGAATTAACAAAAGATCGTGTCCTAACTTACGGGGCATGATCCTTTTTTCTAACCCGAGATAAC
*
60717362 TAAATATCTTTTAAATAAGTAAATTTTTGGCATCCATTTCGCACATCGGGAATTCAAGACATTAT
66 TAAATATCTTTTAAATAAGCAAATTTTTGGCATCCATTTCG-ACATCGGGAATTCAAGACATTAT
* * *
60717427 GTCCTAACTTA-GTGGATACAATTCTCTTTCTCGATTAATGTGAAATATGCTCTTTTTT
130 GTCCTAACTTACG-AGATACAATT-TCTTTCTCGATTAACGTGAAATATGCCCTTTTTT
* *
60717485 GGGAATTAACAAAAGATTGTGTTCTAACTTACGGGGCATGATCC-TTTTTCTAGACCCGAGATAA
1 GGGAATTAACAAAAGATCGTGTCCTAACTTACGGGGCATGATCCTTTTTTCTA-ACCCGAGATAA
* *** ** * *
60717549 TTAAATATCTTTTTAAATAAGCAAATTTTTGGCATTTGTTTTCG-TGTTGTGAATTCAAGACATT
65 CTAAATATC-TTTTAAATAAGCAAATTTTTGGCA-TCCATTTCGACATCGGGAATTCAAGACATT
* * * * * *
60717613 GTGTCTTAACTTACGAGATGCAATTTTTTTCTTGATTAACGTGAAGTATGCCCTTTTT
128 ATGTCCTAACTTACGAGATACAATTTCTTTCTCGATTAACGTGAAATATGCCCTTTTT
60717671 CTTTTCAAAT
Statistics
Matches: 157, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
187 35 0.22
188 92 0.59
189 24 0.15
190 6 0.04
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (186 bp):
GGGAATTAACAAAAGATCGTGTCCTAACTTACGGGGCATGATCCTTTTTTCTAACCCGAGATAAC
TAAATATCTTTTAAATAAGCAAATTTTTGGCATCCATTTCGACATCGGGAATTCAAGACATTATG
TCCTAACTTACGAGATACAATTTCTTTCTCGATTAACGTGAAATATGCCCTTTTTT
Found at i:60719039 original size:221 final size:221
Alignment explanation
Indices: 60718656--60719095 Score: 745
Period size: 221 Copynumber: 2.0 Consensus size: 221
60718646 TTTATTAAGC
* * *
60718656 ATAACAACCTATGTATTCATCAACTATTCAAACATGGTTCTTTATTCACATTTAATATTACAAAC
1 ATAACAACCTATGTATTCATAAACTATTCAAACATGGTTCTTCATTCACATTTAACATTACAAAC
60718721 TCAATCAAAACATATTTAAAATATACCATTCAATTGCTTCAAACATATCCTACCACAATGCCATT
66 TCAATCAAAACATATTTAAAATATACCATTCAATTGCTTCAAACATATCCTACCACAATGCCATT
* * *
60718786 AATGCACATACAAGCTCATCACATAGGACTATCAAAATTCAAGCATTATCAAAAGATCAAAGCTA
131 AATGCACATACAAGCTCACCACATAAGACTATCAAAATACAAGCATTATCAAAAGATCAAAGCTA
60718851 CCATATCCAAGTAATCATATATGATT
196 CCATATCCAAGTAATCATATATGATT
* * *
60718877 ATAACAACCTATGTATTCATAAATTATTCAAATATGGTTCTTCATTCACATTTAACATTCCAAAC
1 ATAACAACCTATGTATTCATAAACTATTCAAACATGGTTCTTCATTCACATTTAACATTACAAAC
* * * *
60718942 TCAGTCAAAACATATTTAAAATATACCATTCAATTGCTTCAAACATATCTTACCACAATTCTATT
66 TCAATCAAAACATATTTAAAATATACCATTCAATTGCTTCAAACATATCCTACCACAATGCCATT
* *
60719007 AATGCACATACAAGCTCACCACATAAGACTATCAAAATACAAGCATTATCTAAATATCAAAGCTA
131 AATGCACATACAAGCTCACCACATAAGACTATCAAAATACAAGCATTATCAAAAGATCAAAGCTA
60719072 CCATATCCAAGTAATCATATATGA
196 CCATATCCAAGTAATCATATATGA
60719096 GCATAACATT
Statistics
Matches: 204, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
221 204 1.00
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.31
Consensus pattern (221 bp):
ATAACAACCTATGTATTCATAAACTATTCAAACATGGTTCTTCATTCACATTTAACATTACAAAC
TCAATCAAAACATATTTAAAATATACCATTCAATTGCTTCAAACATATCCTACCACAATGCCATT
AATGCACATACAAGCTCACCACATAAGACTATCAAAATACAAGCATTATCAAAAGATCAAAGCTA
CCATATCCAAGTAATCATATATGATT
Found at i:60719594 original size:21 final size:20
Alignment explanation
Indices: 60719544--60719607 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
60719534 GTTGATAAAA
*
60719544 CAAAT-AGGGTAACTGAAGTG
1 CAAATCAGGGGAA-TGAAGTG
*
60719564 CATA-CAGGGGAATGAGAGTG
1 CAAATCAGGGGAATGA-AGTG
*
60719584 CAAATCAGGGGCATGAATGTG
1 CAAATCAGGGGAATGAA-GTG
60719605 CAA
1 CAA
60719608 TCAAAGGCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
19 3 0.08
20 17 0.47
21 16 0.44
ACGTcount: A:0.38, C:0.12, G:0.33, T:0.17
Consensus pattern (20 bp):
CAAATCAGGGGAATGAAGTG
Found at i:60723600 original size:23 final size:23
Alignment explanation
Indices: 60723574--60723664 Score: 146
Period size: 23 Copynumber: 4.0 Consensus size: 23
60723564 GTGTTATTGA
*
60723574 TCAGTGGTAGCTTCGGCTACGTT
1 TCAGTGGTAGCTTCGGCTACATT
*
60723597 TCAGTGGTGGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
60723620 TCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
*
60723643 GCAGTGGTAGCTTCGGCTACAT
1 TCAGTGGTAGCTTCGGCTACAT
60723665 AACAGTGTTG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 63 1.00
ACGTcount: A:0.16, C:0.22, G:0.30, T:0.32
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:60731414 original size:20 final size:19
Alignment explanation
Indices: 60731391--60731433 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
60731381 TCGAGAACCA
60731391 TTTTACTTAGTAAATAATGGT
1 TTTTACTTA-TAAAT-ATGGT
*
60731412 TTTTATTTATAAATATGGT
1 TTTTACTTATAAATATGGT
60731431 TTT
1 TTT
60731434 ATTTGGGAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.38
20 5 0.24
21 8 0.38
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.56
Consensus pattern (19 bp):
TTTTACTTATAAATATGGT
Found at i:60731431 original size:19 final size:20
Alignment explanation
Indices: 60731391--60731437 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 20
60731381 TCGAGAACCA
*
60731391 TTTTACTTAGTAAATAATGG
1 TTTTATTTAGTAAATAATGG
60731411 TTTTTATTTA-TAAAT-ATGG
1 -TTTTATTTAGTAAATAATGG
60731430 TTTTATTT
1 TTTTATTT
60731438 GGGAGTTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 8 0.32
19 4 0.16
20 5 0.20
21 8 0.32
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (20 bp):
TTTTATTTAGTAAATAATGG
Found at i:60736693 original size:38 final size:38
Alignment explanation
Indices: 60736648--60736735 Score: 104
Period size: 38 Copynumber: 2.3 Consensus size: 38
60736638 GATCTTTCGA
* * **
60736648 GGCGACACCGTGGCAACGGTTATCTACTGGTCCTTTGG
1 GGCGACACCGTGACAACGATTATCTACTGGTCCTTCAG
* * * *
60736686 GGTGACACTGCGACGACGATTATCTACTGGTCCTTCAG
1 GGCGACACCGTGACAACGATTATCTACTGGTCCTTCAG
60736724 GGCGACACCGTG
1 GGCGACACCGTG
60736736 TAAACGGTAT
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (38 bp):
GGCGACACCGTGACAACGATTATCTACTGGTCCTTCAG
Found at i:60738849 original size:14 final size:15
Alignment explanation
Indices: 60738814--60738853 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
60738804 TTGGGTTAAG
*
60738814 AAAATTATTTAATTGA
1 AAAATTAATTAATT-A
60738830 AAAATTAATTAATT-
1 AAAATTAATTAATTA
60738844 AAAATTAATT
1 AAAATTAATT
60738854 TAATAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.43
16 13 0.57
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
AAAATTAATTAATTA
Found at i:60746872 original size:17 final size:19
Alignment explanation
Indices: 60746844--60746884 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
60746834 AAAATTATAA
60746844 TAAAAGTTATATATTTT-T
1 TAAAAGTTATATATTTTAT
*
60746862 TAAAA-TTATATTTTTTAT
1 TAAAAGTTATATATTTTAT
60746880 TAAAA
1 TAAAA
60746885 ATAACAACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TAAAAGTTATATATTTTAT
Found at i:60747688 original size:17 final size:18
Alignment explanation
Indices: 60747666--60747708 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
60747656 GGAGCTCGCA
60747666 GGTGAGCTCT-CAAGT-TT
1 GGTGAGCTCTGC-AGTCTT
60747683 GGTGAGCT-TGCAGTCTT
1 GGTGAGCTCTGCAGTCTT
60747700 GGTGAGCTC
1 GGTGAGCTC
60747709 GTAATTCTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 4 0.17
17 19 0.83
ACGTcount: A:0.14, C:0.19, G:0.35, T:0.33
Consensus pattern (18 bp):
GGTGAGCTCTGCAGTCTT
Found at i:60747747 original size:17 final size:17
Alignment explanation
Indices: 60747699--60747747 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
60747689 CTTGCAGTCT
* *
60747699 TGGTGAGCTCGTAATTC
1 TGGTGAGCTCGCAATGC
* * *
60747716 TGGAGAGGTCACAATGC
1 TGGTGAGCTCGCAATGC
60747733 TGGTGAGCTCGCAAT
1 TGGTGAGCTCGCAAT
60747748 TCGCACTATT
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.27
Consensus pattern (17 bp):
TGGTGAGCTCGCAATGC
Found at i:60748579 original size:31 final size:31
Alignment explanation
Indices: 60748513--60748586 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
60748503 TTCTATACAT
*
60748513 AAATTTTAATT-TAGTGCAATTATAGACGTA
1 AAATTTTAATTGTAGTGCAAATATAGACGTA
* * * *
60748543 AAATTTTAATTGTAGTTCAAATGTATACTTA
1 AAATTTTAATTGTAGTGCAAATATAGACGTA
60748574 AAATTTTAATTGT
1 AAATTTTAATTGT
60748587 GATTTAATCA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
30 11 0.29
31 27 0.71
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.45
Consensus pattern (31 bp):
AAATTTTAATTGTAGTGCAAATATAGACGTA
Found at i:60755165 original size:20 final size:20
Alignment explanation
Indices: 60755140--60755177 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
60755130 TGTTTTAAAG
60755140 TTACGATTTTATGGTAATGC
1 TTACGATTTTATGGTAATGC
60755160 TTACGATTTTATGGTAAT
1 TTACGATTTTATGGTAAT
60755178 ACTCTGTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.18, T:0.47
Consensus pattern (20 bp):
TTACGATTTTATGGTAATGC
Found at i:60765087 original size:277 final size:277
Alignment explanation
Indices: 60764495--60765321 Score: 1191
Period size: 277 Copynumber: 3.0 Consensus size: 277
60764485 ACGTTACGAT
* ** *
60764495 AAATCGATACGAGGAACACATTGAACGGGACTCAATTTCAAACTCGGGATCAAATTAAAATTTCC
1 AAATCGATACGAGGAACAAATTGAACGGGACTCGGTTTCAAACTCGGGATCAAATTAAAATTTTC
*
60764560 AACAAAAGAAGT-TGAAGA-TTTTATGAAAAGGAAAT-AAGTGAATAACAAAAAAAGATGTATTT
66 AACAAAAGAA-TATGAAGATTTTTATGAAAAGGAAATGAAG-GAATAACAGAAAAAGATGTATTT
* * * * * * *
60764622 AAATAAGGGAAAAGAGAAATTT-TAATTAAGGTTGGAAAGAAGTAAAAATCCACATGTAATTAAG
129 AAAGAAGAGAAAAAAG-AATTTCTAATTAGGGTTGAAAAGAAGTAGAAATCCACATGTAATTAGG
* * *
60764686 AAAATAGATTAAATGGTTAGGGTTTCAGAAATTTAAAGGGTTGAATGGTAAAATACTCATTTTTG
193 AAAATGGATTAAAT-GTTAGGGTTTAAGAAATTTAAGGGGTTGAATGGTAAAATACTCATTTTTG
*
60764751 TCGACATT-AAAAAAAAAGAG
257 TTGACATTGAAAAAAAAAGAG
* * *
60764771 AAATTGATACGAGGAACAAATTGAATGGGACTTGGTTTCAAACTCGGGATCAAATTAAAATTTTC
1 AAATCGATACGAGGAACAAATTGAACGGGACTCGGTTTCAAACTCGGGATCAAATTAAAATTTTC
*
60764836 AACAAAAGAATATGAAGATTTTTATGAAAAGGAAATGAAGGAATAACAGAAAAAGAGGTATTTAA
66 AACAAAAGAATATGAAGATTTTTATGAAAAGGAAATGAAGGAATAACAGAAAAAGATGTATTTAA
*
60764901 AGAAGAGAAAAAAGAATTTCTAATTTGGGTTGAAAAGAAGTAGAAATCCACATGTAATTAGGAAA
131 AGAAGAGAAAAAAGAATTTCTAATTAGGGTTGAAAAGAAGTAGAAATCCACATGTAATTAGGAAA
* * *
60764966 ATGGATTAAATATTAGGGTTTAAGAAATTTAAGGGGTTGAATGGTAAAATACCCCTTTTTGTTGA
196 ATGGATTAAATGTTAGGGTTTAAGAAATTTAAGGGGTTGAATGGTAAAATACTCATTTTTGTTGA
60765031 CATTGAAAAAAAAAGAG
261 CATTGAAAAAAAAAGAG
* * **
60765048 AAATCAATACGAAGAACGGATTGAACGGGACTCGGTTTCAAACTCGGGATCAAATTAAAATTTTC
1 AAATCGATACGAGGAACAAATTGAACGGGACTCGGTTTCAAACTCGGGATCAAATTAAAATTTTC
* * * * *
60765113 AGCAAAAGAAGATGAAGATTTTTATGAAAAAGAAATGAGGGAATAACAGAAAAAGATGCATTTAA
66 AACAAAAGAATATGAAGATTTTTATGAAAAGGAAATGAAGGAATAACAGAAAAAGATGTATTTAA
* * * *
60765178 AGAGGAGAAAAAAGAAATTCTAATTAGGGTTGAAAAGGAGTAGAAATGCACATGTAATTAGGAAA
131 AGAAGAGAAAAAAGAATTTCTAATTAGGGTTGAAAAGAAGTAGAAATCCACATGTAATTAGGAAA
* * *
60765243 ATGGATTAAATTGTTAGGGTTTAA-AAATTTAAGGGG-TAAATGGTAAAATACTCTTTTTTGCTG
196 ATGGATTAAA-TGTTAGGGTTTAAGAAATTTAAGGGGTTGAATGGTAAAATACTCATTTTTGTTG
60765306 ACATTGAAAAATAAAA
260 ACATTGAAAAA-AAAA
60765322 AGTGGGGGAG
Statistics
Matches: 497, Mismatches: 47, Indels: 13
0.89 0.08 0.02
Matches are distributed among these distances:
275 1 0.00
276 165 0.33
277 316 0.64
278 15 0.03
ACGTcount: A:0.46, C:0.08, G:0.20, T:0.26
Consensus pattern (277 bp):
AAATCGATACGAGGAACAAATTGAACGGGACTCGGTTTCAAACTCGGGATCAAATTAAAATTTTC
AACAAAAGAATATGAAGATTTTTATGAAAAGGAAATGAAGGAATAACAGAAAAAGATGTATTTAA
AGAAGAGAAAAAAGAATTTCTAATTAGGGTTGAAAAGAAGTAGAAATCCACATGTAATTAGGAAA
ATGGATTAAATGTTAGGGTTTAAGAAATTTAAGGGGTTGAATGGTAAAATACTCATTTTTGTTGA
CATTGAAAAAAAAAGAG
Found at i:60765470 original size:14 final size:15
Alignment explanation
Indices: 60765451--60765479 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
60765441 CATAGTTGTT
60765451 GAAAAAT-AAAAGAG
1 GAAAAATGAAAAGAG
60765465 GAAAAATGAAAAGAG
1 GAAAAATGAAAAGAG
60765480 TAGGTCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.69, C:0.00, G:0.24, T:0.07
Consensus pattern (15 bp):
GAAAAATGAAAAGAG
Found at i:60768175 original size:5 final size:6
Alignment explanation
Indices: 60768158--60768182 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
60768148 TTTTGTCTCC
60768158 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
60768183 GTCCCAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:60773042 original size:171 final size:173
Alignment explanation
Indices: 60772741--60773084 Score: 485
Period size: 171 Copynumber: 2.0 Consensus size: 173
60772731 TCACGAAATC
* * *
60772741 TTGTCCATTTAAGGTGACTGCTAAAACTTGTGAACTTTAAGGTGGCTGCGGAATCGAGGGTTGTT
1 TTGTCCATTTAAGGTGACTGCTAAAACTCGTGAACTTTAAGGTGGCTGCGGAAACGAAGGTTGTT
* * * * *
60772806 ACAAATGTGGTATAACACATTTGGATCCAGCAACCGGGTCAGATTTGGGGTGTTACACAATATTT
66 ACAAATGTGGTATAACACATTTGAATCAAGCAACCAGGTCAGATTTGAGGCGTTACACAATATTT
* * *
60772871 CTCATTTTTT-TCTTTTAACATTGTAATACAAGTTTTAAGCTT
131 CCCATTTTTTCCCTCTTAACATTGTAATACAAGTTTTAAGCTT
* * *
60772913 TTGTCCATTTAAGTTGGCTGCTAAAACTCGTGAACTTTAAGGTGGCTG-TGAAACGAAGGTTGTT
1 TTGTCCATTTAAGGTGACTGCTAAAACTCGTGAACTTTAAGGTGGCTGCGGAAACGAAGGTTGTT
* * ** *
60772977 ACAAATGTGGTATAATATATTTGAATCAAGCAATTAGGTCAGATTTGAGGCGTTATACAATATTT
66 ACAAATGTGGTATAACACATTTGAATCAAGCAACCAGGTCAGATTTGAGGCGTTACACAATATTT
* *
60773042 CCCCTTTTTTCCCTCTTAATATTGTAATACAAGTTTTAAGCTT
131 CCCATTTTTTCCCTCTTAACATTGTAATACAAGTTTTAAGCTT
60773085 AAAAAAATTG
Statistics
Matches: 150, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
171 76 0.51
172 74 0.49
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (173 bp):
TTGTCCATTTAAGGTGACTGCTAAAACTCGTGAACTTTAAGGTGGCTGCGGAAACGAAGGTTGTT
ACAAATGTGGTATAACACATTTGAATCAAGCAACCAGGTCAGATTTGAGGCGTTACACAATATTT
CCCATTTTTTCCCTCTTAACATTGTAATACAAGTTTTAAGCTT
Found at i:60773640 original size:14 final size:14
Alignment explanation
Indices: 60773618--60773651 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
60773608 CATTATTCTC
*
60773618 ATTTTAACAAATAT
1 ATTTGAACAAATAT
60773632 ATTTGAACAAATAT
1 ATTTGAACAAATAT
60773646 AGTTTG
1 A-TTTG
60773652 TAATCTCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.41
Consensus pattern (14 bp):
ATTTGAACAAATAT
Found at i:60776182 original size:13 final size:13
Alignment explanation
Indices: 60776164--60776194 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
60776154 TAAACAAAAT
60776164 ATAAAATAAAAGA
1 ATAAAATAAAAGA
60776177 ATAAAATAAAAGA
1 ATAAAATAAAAGA
*
60776190 GTAAA
1 ATAAA
60776195 GAGAATGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.16
Consensus pattern (13 bp):
ATAAAATAAAAGA
Found at i:60778964 original size:12 final size:13
Alignment explanation
Indices: 60778931--60778975 Score: 58
Period size: 12 Copynumber: 3.6 Consensus size: 13
60778921 TTTAAAAATA
60778931 ATTATT-TGATTT
1 ATTATTATGATTT
*
60778943 ATTTTTATGATTT
1 ATTATTATGATTT
60778956 -TTATTATGATTT
1 ATTATTATGATTT
*
60778968 ATTGTTAT
1 ATTATTAT
60778976 TACTTTCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 16 0.57
13 12 0.43
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (13 bp):
ATTATTATGATTT
Found at i:60781704 original size:30 final size:30
Alignment explanation
Indices: 60781668--60781724 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
60781658 TTCATATCAG
*
60781668 AAACTAAAAAATTATGACTATAGAAAAATA
1 AAACTAAAAAATTACGACTATAGAAAAATA
*
60781698 AAACTAAAAAATTCCGACTATAGAAAA
1 AAACTAAAAAATTACGACTATAGAAAA
60781725 CTATGTCTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.61, C:0.11, G:0.07, T:0.21
Consensus pattern (30 bp):
AAACTAAAAAATTACGACTATAGAAAAATA
Found at i:60786386 original size:25 final size:25
Alignment explanation
Indices: 60786327--60786439 Score: 113
Period size: 25 Copynumber: 4.6 Consensus size: 25
60786317 ATTCATGTAC
* ***
60786327 GCTCATACGAGCTGTA-AACACTAA
1 GCTCATACGAGCTGAATAACGGGAA
* *
60786351 GCTCTTTCGAGCTGAATAACGGGAA
1 GCTCATACGAGCTGAATAACGGGAA
60786376 GCTCATACGAGCTGAATAACGGGAA
1 GCTCATACGAGCTGAATAACGGGAA
* * *
60786401 GGTCATGCGAGCT-AAGTATCGGGAA
1 GCTCATACGAGCTGAA-TAACGGGAA
*
60786426 GCTCATAAGAGCTG
1 GCTCATACGAGCTG
60786440 TGGTGTGTCT
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
24 15 0.21
25 57 0.79
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.20
Consensus pattern (25 bp):
GCTCATACGAGCTGAATAACGGGAA
Found at i:60786763 original size:15 final size:16
Alignment explanation
Indices: 60786743--60786776 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
60786733 TATATGAATG
60786743 AATATAACTCA-ATTC
1 AATATAACTCATATTC
*
60786758 AATATAATTCATATTC
1 AATATAACTCATATTC
60786774 AAT
1 AAT
60786777 TTAGTCCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (16 bp):
AATATAACTCATATTC
Found at i:60786797 original size:30 final size:30
Alignment explanation
Indices: 60786761--60786820 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
60786751 TCAATTCAAT
60786761 ATAATTCATATTCAATTTAGTCCAACACAC
1 ATAATTCATATTCAATTTAGTCCAACACAC
*
60786791 ATAATTCATGTTCAATTTAGTCCAACACAC
1 ATAATTCATATTCAATTTAGTCCAACACAC
60786821 TTTTTTTGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.33
Consensus pattern (30 bp):
ATAATTCATATTCAATTTAGTCCAACACAC
Found at i:60790189 original size:27 final size:27
Alignment explanation
Indices: 60790151--60790218 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
60790141 ATCATCAGGC
*
60790151 TATAACGGTCATTTCAT-CTCCTAGGGG
1 TATAACAGTCATTTCATCCT-CTAGGGG
* * *
60790178 TATAACAGTCATTTTATCCTGTGGGGG
1 TATAACAGTCATTTCATCCTCTAGGGG
*
60790205 TATTACAGTCATTT
1 TATAACAGTCATTT
60790219 TACCCTTCGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 33 0.94
28 2 0.06
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.38
Consensus pattern (27 bp):
TATAACAGTCATTTCATCCTCTAGGGG
Found at i:60790235 original size:27 final size:27
Alignment explanation
Indices: 60790183--60790412 Score: 268
Period size: 27 Copynumber: 8.5 Consensus size: 27
60790173 AGGGGTATAA
* * *
60790183 CAGTCATTTTATCCTGT-GGGGGTATTA
1 CAGTCATTTTACCCT-TCGAGGGTATTT
*
60790210 CAGTCATTTTACCCTTCGAGGTTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
** *
60790237 TGGTCATTTT-CCCATTCAAGGGTATTT
1 CAGTCATTTTACCC-TTCGAGGGTATTT
* *
60790264 CAGTCATTTTACCTTTCAAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
** *
60790291 TGGTCATTTTACCCTTCAAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
60790318 CAGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
60790345 CAGTCATTTTACCCTTCGAAGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
60790372 CAGTCATTTTACCCTTTGAGAGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
60790399 -TGATCATTTTACCC
1 CAG-TCATTTTACCC
60790413 ATTTTCGCCG
Statistics
Matches: 177, Mismatches: 22, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
26 5 0.03
27 170 0.96
28 2 0.01
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (27 bp):
CAGTCATTTTACCCTTCGAGGGTATTT
Found at i:60790260 original size:54 final size:54
Alignment explanation
Indices: 60790202--60790412 Score: 309
Period size: 54 Copynumber: 3.9 Consensus size: 54
60790192 TATCCTGTGG
* *
60790202 GGGTATTACAGTCATTTTACCCTTCGAGGTTATTTTGGTCATTTT-CCCATTCAA
1 GGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCC-TTCAA
* *
60790256 GGGTATTTCAGTCATTTTACCTTTCAAGGGTATTTTGGTCATTTTACCCTTCAA
1 GGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCAA
**
60790310 GGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAA
1 GGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTC-AA
* * *
60790365 -GGTATTTCAGTCATTTTACCCTTTGAGAGTATTTTGATCATTTTACCC
1 GGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCC
60790413 ATTTTCGCCG
Statistics
Matches: 142, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
54 137 0.96
55 5 0.04
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (54 bp):
GGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCAA
Found at i:60791205 original size:18 final size:19
Alignment explanation
Indices: 60791169--60791211 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
60791159 GCAAAAACGC
*
60791169 AAAACTGACCGAAACAAAA
1 AAAACTGACCAAAACAAAA
*
60791188 AAAACTGA-CAAAAGAAAA
1 AAAACTGACCAAAACAAAA
*
60791206 ACAACT
1 AAAACT
60791212 TCAAAAATCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.65, C:0.19, G:0.09, T:0.07
Consensus pattern (19 bp):
AAAACTGACCAAAACAAAA
Found at i:60796502 original size:50 final size:50
Alignment explanation
Indices: 60796448--60796548 Score: 141
Period size: 50 Copynumber: 2.0 Consensus size: 50
60796438 CTCTTTCAAA
*
60796448 CTAAATAATGGGAAGCTCATGCAAGCTGAA-TAACGGAAAGCTCATACGAG
1 CTAAATAATGGGAAGCTCATGCAAGCT-AAGTAACGGAAAGCTCATAAGAG
* * * *
60796498 CTAAATAATGGGAAGGTCATGCGAGCTAAGTATCGGGAAGCTCATAAGAG
1 CTAAATAATGGGAAGCTCATGCAAGCTAAGTAACGGAAAGCTCATAAGAG
60796548 C
1 C
60796549 CGTGGTGTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
49 2 0.04
50 43 0.96
ACGTcount: A:0.38, C:0.17, G:0.27, T:0.19
Consensus pattern (50 bp):
CTAAATAATGGGAAGCTCATGCAAGCTAAGTAACGGAAAGCTCATAAGAG
Found at i:60796548 original size:25 final size:25
Alignment explanation
Indices: 60796448--60796548 Score: 105
Period size: 25 Copynumber: 4.0 Consensus size: 25
60796438 CTCTTTCAAA
* *
60796448 CTAAATAATGGGAAGCTCATGCAAG
1 CTAAATAATGGGAAGCTCATACGAG
* * *
60796473 CTGAATAACGGAAAGCTCATACGAG
1 CTAAATAATGGGAAGCTCATACGAG
* *
60796498 CTAAATAATGGGAAGGTCATGCGAG
1 CTAAATAATGGGAAGCTCATACGAG
* *
60796523 CTAAGT-ATCGGGAAGCTCATAAGAG
1 CTAAATAAT-GGGAAGCTCATACGAG
60796548 C
1 C
60796549 CGTGGTGTGT
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
24 2 0.03
25 59 0.97
ACGTcount: A:0.38, C:0.17, G:0.27, T:0.19
Consensus pattern (25 bp):
CTAAATAATGGGAAGCTCATACGAG
Found at i:60797204 original size:24 final size:24
Alignment explanation
Indices: 60797172--60797252 Score: 117
Period size: 24 Copynumber: 3.4 Consensus size: 24
60797162 AAATTGAAGC
*
60797172 ATACTCATCAAAGGCAAAACCTTA
1 ATACTCATCAATGGCAAAACCTTA
*
60797196 ATACCCATCAATGGCAAAACCTTA
1 ATACTCATCAATGGCAAAACCTTA
* * *
60797220 ATACTCATCATTGGAAAAACCCTA
1 ATACTCATCAATGGCAAAACCTTA
60797244 ATACTCATC
1 ATACTCATC
60797253 CCCAAGTTAG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.42, C:0.27, G:0.07, T:0.23
Consensus pattern (24 bp):
ATACTCATCAATGGCAAAACCTTA
Found at i:60804692 original size:9 final size:9
Alignment explanation
Indices: 60804678--60804707 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
60804668 ATTAAAGTAT
60804678 TAATTAAAC
1 TAATTAAAC
60804687 TAATTAAAC
1 TAATTAAAC
*
60804696 TAATTAATC
1 TAATTAAAC
60804705 TAA
1 TAA
60804708 ACGAACCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (9 bp):
TAATTAAAC
Found at i:60810010 original size:28 final size:26
Alignment explanation
Indices: 60809955--60810010 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
60809945 TAATCTCTGC
*
60809955 AATTCTCTGCAATTTTTTTAAAGTGA
1 AATTCTCTGCAATTTTTTTAAAGAGA
*
60809981 AATTCTCTGTAATTTTTTTCAAAGAAGA
1 AATTCTCTGCAATTTTTTT-AAAG-AGA
60810009 AA
1 AA
60810011 AACAAATGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 18 0.69
27 4 0.15
28 4 0.15
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.43
Consensus pattern (26 bp):
AATTCTCTGCAATTTTTTTAAAGAGA
Found at i:60816498 original size:12 final size:11
Alignment explanation
Indices: 60816474--60816508 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 11
60816464 TTTCAACAAG
60816474 TTTTCC-TTCA
1 TTTTCCTTTCA
60816484 TTTTCCTTGTCA
1 TTTTCCTT-TCA
60816496 TTTTCCTTTCA
1 TTTTCCTTTCA
60816507 TT
1 TT
60816509 GTCTGCAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.26
11 6 0.26
12 11 0.48
ACGTcount: A:0.09, C:0.26, G:0.03, T:0.63
Consensus pattern (11 bp):
TTTTCCTTTCA
Found at i:60822094 original size:20 final size:21
Alignment explanation
Indices: 60822069--60822111 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
60822059 AAGTCTTGGA
*
60822069 GCAAAACTG-CCTTCGATGTC
1 GCAAAACCGACCTTCGATGTC
*
60822089 GCAAAACCGACCTTCGTTGTC
1 GCAAAACCGACCTTCGATGTC
60822110 GC
1 GC
60822112 GACATCAGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (21 bp):
GCAAAACCGACCTTCGATGTC
Found at i:60824567 original size:34 final size:35
Alignment explanation
Indices: 60824523--60824590 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 35
60824513 GCACAGTTGA
* *
60824523 ACAGTCTTGGGCCTAAGCCCTTTTCAGTATCAGTG
1 ACAGTCTTGGGCCTAAGCCCATTACAGTATCAGTG
*
60824558 ACAGT-TTGGGCCTTAGCCCATTACAGTATCAGT
1 ACAGTCTTGGGCCTAAGCCCATTACAGTATCAGT
60824591 AGCAATAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 25 0.83
35 5 0.17
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (35 bp):
ACAGTCTTGGGCCTAAGCCCATTACAGTATCAGTG
Found at i:60830808 original size:50 final size:50
Alignment explanation
Indices: 60830693--60830941 Score: 327
Period size: 50 Copynumber: 4.8 Consensus size: 50
60830683 GATAATAACA
* **
60830693 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * *
60830744 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
60830794 TGCCAACGCCATGTCCCAGACATGGTCTTACACGAGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
60830844 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC--GG
* * *
60830899 ATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGATCTCT
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
60830942 TTACCCAAAT
Statistics
Matches: 176, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
50 97 0.55
51 33 0.19
53 5 0.03
55 2 0.01
56 39 0.22
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:60837488 original size:50 final size:50
Alignment explanation
Indices: 60837373--60837616 Score: 326
Period size: 50 Copynumber: 4.7 Consensus size: 50
60837363 GATAATAACA
* **
60837373 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * *
60837424 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
60837474 TGCCAACGCCATGTCCCAAACATGGTCTTATATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
60837524 TGCCAACGCCATGTCCCAGACATGTTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC--GG
*
60837579 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
60837617 TCTATTTTCC
Statistics
Matches: 172, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
50 97 0.56
51 33 0.19
53 5 0.03
55 2 0.01
56 35 0.20
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:60837994 original size:30 final size:30
Alignment explanation
Indices: 60837959--60838016 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
60837949 CCTCGACTCT
*
60837959 AACTTTTTCAAAATTACGA-TTTTGCCCCTA
1 AACTTTTACAAAATTAC-ATTTTTGCCCCTA
*
60837989 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACATTTTTGCCCC
60838017 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACATTTTTGCCCCTA
Found at i:60840756 original size:18 final size:19
Alignment explanation
Indices: 60840733--60840771 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
60840723 TTTAACCCTT
*
60840733 AATCCC-CAAACTCTCTTA
1 AATCCCTCAAACCCTCTTA
*
60840751 AATCCCTCAGACCCTCTTA
1 AATCCCTCAAACCCTCTTA
60840770 AA
1 AA
60840772 CTTTAAATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.33, C:0.38, G:0.03, T:0.26
Consensus pattern (19 bp):
AATCCCTCAAACCCTCTTA
Found at i:60848476 original size:25 final size:25
Alignment explanation
Indices: 60848446--60848568 Score: 228
Period size: 25 Copynumber: 4.9 Consensus size: 25
60848436 GGGAGTTTAG
60848446 AGTGCTCTCTGATTACTAGCACGTC
1 AGTGCTCTCTGATTACTAGCACGTC
*
60848471 AATGCTCTCTGATTACTAGCACGTC
1 AGTGCTCTCTGATTACTAGCACGTC
60848496 AGTGCTCTCTGATTACTAGCACGTC
1 AGTGCTCTCTGATTACTAGCACGTC
60848521 AGTGCTCTCTGATTACTAGCACGTC
1 AGTGCTCTCTGATTACTAGCACGTC
*
60848546 AGTGCTCTTTGATTACTAGCACG
1 AGTGCTCTCTGATTACTAGCACG
60848569 CTCTCTATTT
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 95 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.33
Consensus pattern (25 bp):
AGTGCTCTCTGATTACTAGCACGTC
Found at i:60848593 original size:22 final size:22
Alignment explanation
Indices: 60848568--60848623 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
60848558 TTACTAGCAC
*
60848568 GCTCTCTATTTAGCACATTT-GT
1 GCTCTCTGTTTAGCAC-TTTAGT
*
60848590 GCTCTCTGTATAGCACTTTAGT
1 GCTCTCTGTTTAGCACTTTAGT
60848612 GCTCTCTGTTTA
1 GCTCTCTGTTTA
60848624 ATAGTGCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 3 0.10
22 27 0.90
ACGTcount: A:0.16, C:0.23, G:0.16, T:0.45
Consensus pattern (22 bp):
GCTCTCTGTTTAGCACTTTAGT
Found at i:60849931 original size:47 final size:48
Alignment explanation
Indices: 60849880--60849999 Score: 154
Period size: 49 Copynumber: 2.5 Consensus size: 48
60849870 GATTTCCGTA
*
60849880 TAAGACCATAGTTGGGCTATGGCATCGG-TGTGATAAGTG-CTACTTTG
1 TAAGACCATAGTTGGGCTATGGCATCGGATGTGATAAGTGACTAC-ATG
* * * *
60849927 TAAGACCATAGTTGGGCTATGACATCGGTATGTGTTATGTGATTACATG
1 TAAGACCATAGTTGGGCTATGGCATCGG-ATGTGATAAGTGACTACATG
*
60849976 TAAGACCATAGTTGGACTATGGCA
1 TAAGACCATAGTTGGGCTATGGCA
60850000 ATGTGAAAAC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
47 27 0.43
49 33 0.52
50 3 0.05
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.32
Consensus pattern (48 bp):
TAAGACCATAGTTGGGCTATGGCATCGGATGTGATAAGTGACTACATG
Found at i:60856800 original size:9 final size:9
Alignment explanation
Indices: 60856786--60856822 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
60856776 AATACGAAAT
60856786 AATAATAAA
1 AATAATAAA
60856795 AATAATAAA
1 AATAATAAA
* *
60856804 TATAATAGA
1 AATAATAAA
60856813 AATAATAAA
1 AATAATAAA
60856822 A
1 A
60856823 GTAAAGGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (9 bp):
AATAATAAA
Found at i:60856810 original size:18 final size:19
Alignment explanation
Indices: 60856782--60856821 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
60856772 TAATAATACG
60856782 AAATAATAATAAAAATAAT
1 AAATAATAATAAAAATAAT
*
60856801 AAAT-ATAATAGAAATAAT
1 AAATAATAATAAAAATAAT
60856819 AAA
1 AAA
60856822 AGTAAAGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (19 bp):
AAATAATAATAAAAATAAT
Found at i:60865359 original size:60 final size:56
Alignment explanation
Indices: 60865295--60865440 Score: 143
Period size: 60 Copynumber: 2.5 Consensus size: 56
60865285 CGTCAACATG
*
60865295 CCTTTTCATTTTTCGATGGTCGTCACCATCTCTTCTCATAATTTGATAG-CTGAAGCTATC
1 CCTTTTCATATTTCGATGGTCGTCACC-T-T-TTC-CATAATTTGATAGTC-GAAGCTATC
* * * *
60865355 CCTTTTCATAGTTCGATAGCCAAAGTCATCCTTTTCCATAGTTTGATAGTCGAAGCTATC
1 CCTTTTCATATTTCGATGGTC---GTCA-CCTTTTCCATAATTTGATAGTCGAAGCTATC
60865415 CCTTTTCATAGTTT-GATGGTCGTCAC
1 CCTTTTCATA-TTTCGATGGTCGTCAC
60865441 TATCCCTTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
56 1 0.01
57 4 0.06
60 53 0.74
61 6 0.08
62 1 0.01
63 5 0.07
64 2 0.03
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (56 bp):
CCTTTTCATATTTCGATGGTCGTCACCTTTTCCATAATTTGATAGTCGAAGCTATC
Found at i:60865373 original size:30 final size:30
Alignment explanation
Indices: 60865330--60865540 Score: 127
Period size: 30 Copynumber: 7.1 Consensus size: 30
60865320 CCATCTCTTC
* *
60865330 TCATAATTTGATAGCTGAAGCTATCCCTTT
1 TCATAGTTCGATAGCTGAAGCTATCCCTTT
**
60865360 TCATAGTTCGATAGCCAAAG-TCAT-CCTTT
1 TCATAGTTCGATAGCTGAAGCT-ATCCCTTT
*
60865389 TCCATAGTTTGATAG-TCGAAGCTATCCCTTT
1 T-CATAGTTCGATAGCT-GAAGCTATCCCTTT
* * *
60865420 TCATAGTTTGAT-GGTCGTCA-CTATCCCTTT
1 TCATAGTTCGATAGCT-G-AAGCTATCCCTTT
* * * * *
60865450 TCATTGTT-AATGGTCAT-CA-CCATCCCTTT
1 TCATAGTTCGATAG-C-TGAAGCTATCCCTTT
* *
60865479 TCATA-ATCGATAGCGGAAGCTATCCCTTT
1 TCATAGTTCGATAGCTGAAGCTATCCCTTT
* * *
60865508 TCGTA-TTCGATAACTGAAGCTATCCTTTT
1 TCATAGTTCGATAGCTGAAGCTATCCCTTT
60865537 TCAT
1 TCAT
60865541 TTGTCGATGA
Statistics
Matches: 143, Mismatches: 25, Indels: 27
0.73 0.13 0.14
Matches are distributed among these distances:
28 3 0.02
29 64 0.45
30 67 0.47
31 8 0.06
32 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (30 bp):
TCATAGTTCGATAGCTGAAGCTATCCCTTT
Found at i:60865474 original size:29 final size:30
Alignment explanation
Indices: 60865412--60865483 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 30
60865402 AGTCGAAGCT
* * *
60865412 ATCCCTTTTCATAGTTTGATGGTCGTCACT
1 ATCCCTTTTCATAGTTTAATGGTCATCACC
*
60865442 ATCCCTTTTCATTG-TTAATGGTCATCACC
1 ATCCCTTTTCATAGTTTAATGGTCATCACC
60865471 ATCCCTTTTCATA
1 ATCCCTTTTCATA
60865484 ATCGATAGCG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 24 0.65
30 13 0.35
ACGTcount: A:0.19, C:0.26, G:0.11, T:0.43
Consensus pattern (30 bp):
ATCCCTTTTCATAGTTTAATGGTCATCACC
Found at i:60865503 original size:29 final size:29
Alignment explanation
Indices: 60865471--60865540 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
60865461 GGTCATCACC
*
60865471 ATCCCTTTTCATAATCGATAGCGGAAGCT
1 ATCCCTTTTCATAATCGATAACGGAAGCT
* * *
60865500 ATCCCTTTTCGTATTCGATAACTGAAGCT
1 ATCCCTTTTCATAATCGATAACGGAAGCT
*
60865529 ATCCTTTTTCAT
1 ATCCCTTTTCAT
60865541 TTGTCGATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAACGGAAGCT
Found at i:60869877 original size:42 final size:42
Alignment explanation
Indices: 60869777--60869877 Score: 98
Period size: 42 Copynumber: 2.4 Consensus size: 42
60869767 TCTTAAACCG
* * * * *
60869777 TGTAACTCACTGATTTAGGTCACACGGCTGTGTCATAGGCCA
1 TGTAACTCATTGACTTAGGTCACACGGCCGTATCATAGACCA
* * *
60869819 TGTAACTC-TCTAACTTATGTCACACGGCCGTATGC-TAGACTA
1 TGTAACTCAT-TGACTTAGGTCACACGGCCGTAT-CATAGACCA
60869861 TGTAACTCATTGACTTA
1 TGTAACTCATTGACTTA
60869878 ATACACACGG
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
42 45 0.96
43 2 0.04
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (42 bp):
TGTAACTCATTGACTTAGGTCACACGGCCGTATCATAGACCA
Found at i:60871362 original size:27 final size:27
Alignment explanation
Indices: 60871329--60871395 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
60871319 ACGTAAGGCC
* *
60871329 ATAACAGTCATTTCATCTCCTAGGGGT
1 ATAACAGTCATTTCACCTCATAGGGGT
* *
60871356 ATAACAGTCATTTTACCTTATAGGGGT
1 ATAACAGTCATTTCACCTCATAGGGGT
**
60871383 ATTTCAGTCATTT
1 ATAACAGTCATTT
60871396 TATCCTATGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (27 bp):
ATAACAGTCATTTCACCTCATAGGGGT
Found at i:60871456 original size:26 final size:27
Alignment explanation
Indices: 60871351--60871453 Score: 143
Period size: 27 Copynumber: 3.8 Consensus size: 27
60871341 TCATCTCCTA
** * *
60871351 GGGGTATAACAGTCATTTTACCTTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
*
60871378 GGGGTATTTCAGTCATTTTATCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
*
60871405 GGGGTATTTTAGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
*
60871432 GGGGTATTTCAATCATTTTACC
1 GGGGTATTTCAGTCATTTTACC
60871454 TATTTTAGGG
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTATG
Found at i:60881267 original size:21 final size:20
Alignment explanation
Indices: 60881243--60881285 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
60881233 GTCTGATGTC
*
60881243 GCGACAACGAAGGTCGGTTTT
1 GCGACAACGAAGG-CAGTTTT
**
60881264 GCGACTTCGAAGGCAGTTTT
1 GCGACAACGAAGGCAGTTTT
60881284 GC
1 GC
60881286 TCCAAGACTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.26
Consensus pattern (20 bp):
GCGACAACGAAGGCAGTTTT
Found at i:60886878 original size:10 final size:11
Alignment explanation
Indices: 60886846--60886880 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 11
60886836 ATTTGCAGAC
60886846 AATGAAAGGAA
1 AATGAAAGGAA
60886857 AATGACAAGGAA
1 AATGA-AAGGAA
60886869 AATG-AAGGAA
1 AATGAAAGGAA
60886879 AA
1 AA
60886881 CTTGTTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 8 0.35
11 5 0.22
12 10 0.43
ACGTcount: A:0.63, C:0.03, G:0.26, T:0.09
Consensus pattern (11 bp):
AATGAAAGGAA
Found at i:60894980 original size:9 final size:9
Alignment explanation
Indices: 60894943--60894972 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
60894933 AAACTAATAA
*
60894943 ATTATTATT
1 ATTAATATT
60894952 ATTAATATT
1 ATTAATATT
60894961 ATTAATATT
1 ATTAATATT
60894970 ATT
1 ATT
60894973 GTTATTATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
ATTAATATT
Found at i:60898618 original size:42 final size:43
Alignment explanation
Indices: 60898552--60898662 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 43
60898542 AAACTCGTAC
* *
60898552 AATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATC-AATAT
1 AATGCCAACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT
*
60898593 CGATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCAAATAT
1 -AATGCCAACTGTCCCAGACAGGGTCTTACACGAAATCAAATAT
* * *
60898636 AATGCCGA-TGTCTCAGACATGGTCTTA
1 AATGCCAACTGTCCCAGACAGGGTCTTA
60898663 TACATAAATC
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
41 2 0.03
42 50 0.85
43 7 0.12
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
AATGCCAACTGTCCCAGACAGGGTCTTACACGAAATCAAATAT
Found at i:60900093 original size:27 final size:27
Alignment explanation
Indices: 60900063--60900262 Score: 188
Period size: 27 Copynumber: 7.4 Consensus size: 27
60900053 ATATTGAGCC
* * *
60900063 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCCACATAATCAACT
* *
60900090 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACATAATCAACT
*
60900117 CGCACACTTAGTGCCACATAGTCAGACT
1 CGCACACTTAGTGCCACATAATCA-ACT
* ** *
60900145 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACATAATCAACT
* **
60900172 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CATAATCAACT
* * **
60900199 CGCACACTTAGTGCAACATATTCATTT
1 CGCACACTTAGTGCCACATAATCAACT
* *
60900226 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCCACATAATC-AACT
60900253 CGCACACTTA
1 CGCACACTTA
60900263 CTGCTGTACA
Statistics
Matches: 151, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.01
27 124 0.82
28 26 0.17
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCCACATAATCAACT
Found at i:60900228 original size:54 final size:54
Alignment explanation
Indices: 60900063--60900262 Score: 217
Period size: 54 Copynumber: 3.7 Consensus size: 54
60900053 ATATTGAGCC
* * * *
60900063 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAGTCAACTCGCACACTTAGTGCCACATAATCAATT
* **
60900117 CGCACACTTAGTGCCA-CATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTG-CATCATAGTCA-ACTCGCACACTTAGTGCCACATAATCAATT
* ** * * *
60900172 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATATTCATTT
1 CGCACACTTAGTGCATCATAGTCAACTCGCACACTTAGTGCCACATAATCAATT
*
60900226 CGCACACTTAGTGCAACATAGTCGAA-TCGCACACTTA
1 CGCACACTTAGTGCATCATAGTC-AACTCGCACACTTA
60900263 CTGCTGTACA
Statistics
Matches: 123, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
54 76 0.62
55 47 0.38
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAGTCAACTCGCACACTTAGTGCCACATAATCAATT
Found at i:60908155 original size:27 final size:27
Alignment explanation
Indices: 60908125--60908324 Score: 188
Period size: 27 Copynumber: 7.4 Consensus size: 27
60908115 ATATTGAGCC
* * *
60908125 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCCACATAATCAACT
* *
60908152 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACATAATCAACT
*
60908179 CGCACACTTAGTGCCACATAGTCAGACT
1 CGCACACTTAGTGCCACATAATCA-ACT
* ** *
60908207 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACATAATCAACT
* **
60908234 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CATAATCAACT
* * **
60908261 CGCACACTTAGTGCAACATATTCATTT
1 CGCACACTTAGTGCCACATAATCAACT
* *
60908288 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCCACATAATC-AACT
60908315 CGCACACTTA
1 CGCACACTTA
60908325 CTGCTGTACA
Statistics
Matches: 151, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.01
27 124 0.82
28 26 0.17
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCCACATAATCAACT
Found at i:60908290 original size:54 final size:54
Alignment explanation
Indices: 60908125--60908324 Score: 217
Period size: 54 Copynumber: 3.7 Consensus size: 54
60908115 ATATTGAGCC
* * * *
60908125 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAGTCAACTCGCACACTTAGTGCCACATAATCAATT
* **
60908179 CGCACACTTAGTGCCA-CATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTG-CATCATAGTCA-ACTCGCACACTTAGTGCCACATAATCAATT
* ** * * *
60908234 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATATTCATTT
1 CGCACACTTAGTGCATCATAGTCAACTCGCACACTTAGTGCCACATAATCAATT
*
60908288 CGCACACTTAGTGCAACATAGTCGAA-TCGCACACTTA
1 CGCACACTTAGTGCATCATAGTC-AACTCGCACACTTA
60908325 CTGCTGTACA
Statistics
Matches: 123, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
54 76 0.62
55 47 0.38
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAGTCAACTCGCACACTTAGTGCCACATAATCAATT
Found at i:60911905 original size:31 final size:30
Alignment explanation
Indices: 60911839--60911906 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
60911829 TTGCCCAAGA
** ***
60911839 GTAAATACTCAAAATTTGAAGGGTTAAAGT
1 GTAAATACAAAAAATTTGAAGGACCAAAGT
60911869 GTAAATACAAAAAATTTGAAGGACCAAAGGT
1 GTAAATACAAAAAATTTGAAGGACCAAA-GT
60911900 GTAAATA
1 GTAAATA
60911907 TTTTAAGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 23 0.72
31 9 0.28
ACGTcount: A:0.49, C:0.07, G:0.19, T:0.25
Consensus pattern (30 bp):
GTAAATACAAAAAATTTGAAGGACCAAAGT
Found at i:60920274 original size:24 final size:24
Alignment explanation
Indices: 60920231--60920277 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
60920221 CCATCTGCTT
*
60920231 CTGATATGTATGATATGAGATGAA
1 CTGATATGAATGATATGAGATGAA
60920255 CTGATATGAAGTGATA-GAGATGA
1 CTGATATGAA-TGATATGAGATGA
60920278 GGAGATACGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.38, C:0.04, G:0.28, T:0.30
Consensus pattern (24 bp):
CTGATATGAATGATATGAGATGAA
Found at i:60922242 original size:33 final size:33
Alignment explanation
Indices: 60922169--60922245 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 33
60922159 GCTAATGTGC
* *
60922169 TTGATTTCCAACAGCAGATACAATGACAAATTG
1 TTGATTTCCAACAGCAAATACAATGACAAATCG
* *
60922202 TTAATTTCCAACAGCAAATACAATGGCAAACTCG
1 TTGATTTCCAACAGCAAATACAATGACAAA-TCG
60922236 -TGATTTCCAA
1 TTGATTTCCAA
60922246 AAGGAAACAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
33 36 0.95
34 2 0.05
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (33 bp):
TTGATTTCCAACAGCAAATACAATGACAAATCG
Found at i:60927359 original size:23 final size:23
Alignment explanation
Indices: 60927333--60927408 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
60927323 AGTGTTATTG
60927333 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
60927356 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
60927379 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
60927402 ATCAGTG
1 ATCAGTG
60927409 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:60927580 original size:38 final size:37
Alignment explanation
Indices: 60927538--60927610 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
60927528 ATGTGTGGAA
* *
60927538 TTGAATTGAATATTGACTTGAAAA-TGGAAAAGTGAATT
1 TTGAATTGAATAGTGA-TT-AAAAGTGAAAAAGTGAATT
60927576 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
60927611 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.45, C:0.01, G:0.22, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAATT
Found at i:60933472 original size:27 final size:27
Alignment explanation
Indices: 60933434--60933561 Score: 161
Period size: 27 Copynumber: 4.7 Consensus size: 27
60933424 GTGAGGTCAA
*
60933434 TAAAATAATCGAAATACCCCTATAGGG
1 TAAAATGATCGAAATACCCCTATAGGG
*
60933461 TAAAATGATCGAAATACCCTTATAGGG
1 TAAAATGATCGAAATACCCCTATAGGG
* * *
60933488 TAAAATAACCGAAATACCCCCATAGGG
1 TAAAATGATCGAAATACCCCTATAGGG
*
60933515 TAAAATGAGT-GAAATA-CCCTGATATGG
1 TAAAATGA-TCGAAATACCCCT-ATAGGG
*
60933542 TAAAATGACCGAAATACCCC
1 TAAAATGATCGAAATACCCC
60933562 CATAAGTTAA
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
26 3 0.03
27 80 0.93
28 3 0.03
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (27 bp):
TAAAATGATCGAAATACCCCTATAGGG
Found at i:60933516 original size:54 final size:54
Alignment explanation
Indices: 60933434--60933574 Score: 203
Period size: 54 Copynumber: 2.6 Consensus size: 54
60933424 GTGAGGTCAA
* * *
60933434 TAAAATAATCGAAATACCCCTATAGGGTAAAATGA-TCGAAATACCCTTATAGGG
1 TAAAATAACCGAAATACCCCCATAGGGTAAAATGAGT-GAAATACCCTGATAGGG
*
60933488 TAAAATAACCGAAATACCCCCATAGGGTAAAATGAGTGAAATACCCTGATATGG
1 TAAAATAACCGAAATACCCCCATAGGGTAAAATGAGTGAAATACCCTGATAGGG
* * *
60933542 TAAAATGACCGAAATACCCCCATAAGTTAAAAT
1 TAAAATAACCGAAATACCCCCATAGGGTAAAAT
60933575 AACTGTTATA
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 78 0.99
55 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.22
Consensus pattern (54 bp):
TAAAATAACCGAAATACCCCCATAGGGTAAAATGAGTGAAATACCCTGATAGGG
Found at i:60933785 original size:26 final size:26
Alignment explanation
Indices: 60933732--60933786 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
60933722 TCTGGCACAT
* *
60933732 ATACTGTTACTGGCAGCTTTGTTACG
1 ATACTGATACTGGCAGCTTTGCTACG
*
60933758 ATACTGATACTGGCAGCTTTGCTGCG
1 ATACTGATACTGGCAGCTTTGCTACG
60933784 ATA
1 ATA
60933787 TTGGTGTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.35
Consensus pattern (26 bp):
ATACTGATACTGGCAGCTTTGCTACG
Found at i:60940877 original size:27 final size:28
Alignment explanation
Indices: 60940839--60940903 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
60940829 TGAGGTTAAT
*
60940839 AAAATGACTGAAATATCCC-T-ATAGGGC
1 AAAATGATTGAAATA-CCCTTCATAGGGC
*
60940866 AAAATGATTGAAATACCCTTCATAGGGT
1 AAAATGATTGAAATACCCTTCATAGGGC
60940894 AAAATGATTG
1 AAAATGATTG
60940904 TTATACCCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 3 0.09
27 15 0.44
28 16 0.47
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (28 bp):
AAAATGATTGAAATACCCTTCATAGGGC
Found at i:60941292 original size:33 final size:34
Alignment explanation
Indices: 60941227--60941297 Score: 81
Period size: 33 Copynumber: 2.1 Consensus size: 34
60941217 GCATTATTAC
* * * *
60941227 ACTGTTACTGTATTGGGCTAAGGCCTACACTG-T
1 ACTGATACTGAATAGGGCTAAGGCCCACACTGTT
* *
60941260 ACTGATACTGAATAGGGCTCAGGCCCAGACTGTT
1 ACTGATACTGAATAGGGCTAAGGCCCACACTGTT
60941294 ACTG
1 ACTG
60941298 CATGTTGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
33 26 0.84
34 5 0.16
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (34 bp):
ACTGATACTGAATAGGGCTAAGGCCCACACTGTT
Found at i:60948070 original size:6 final size:6
Alignment explanation
Indices: 60948059--60948118 Score: 72
Period size: 6 Copynumber: 10.3 Consensus size: 6
60948049 GCAACCCAAA
* *
60948059 TTTATT TTTATT TTTATT TTT-TA TATA-T TTTATT TTTATT TTCTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT-TATT
60948106 TTTA-T TTTATT TT
1 TTTATT TTTATT TT
60948119 ATTGCATGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 11 0.24
6 29 0.63
7 6 0.13
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:60948081 original size:13 final size:13
Alignment explanation
Indices: 60948059--60948113 Score: 67
Period size: 13 Copynumber: 4.1 Consensus size: 13
60948049 GCAACCCAAA
60948059 TTTATTTTTA-TT
1 TTTATTTTTATTT
60948071 TTTATTTTTTATATAT
1 TTTA-TTTTTAT-T-T
60948087 TTTATTTTTATTT
1 TTTATTTTTATTT
*
60948100 TCTATTTTTATTT
1 TTTATTTTTATTT
60948113 T
1 T
60948114 ATTTTATTGC
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
12 4 0.11
13 20 0.53
14 1 0.03
15 8 0.21
16 5 0.13
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTATTTTTATTT
Found at i:60948091 original size:22 final size:24
Alignment explanation
Indices: 60948064--60948118 Score: 78
Period size: 22 Copynumber: 2.4 Consensus size: 24
60948054 CCAAATTTAT
60948064 TTTTATTTTTATTTT-T-TATATA
1 TTTTATTTTTATTTTCTATATATA
* *
60948086 TTTTATTTTTATTTTCTATTTTTA
1 TTTTATTTTTATTTTCTATATATA
60948110 TTTTATTTT
1 TTTTATTTT
60948119 ATTGCATGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 15 0.52
23 1 0.03
24 13 0.45
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (24 bp):
TTTTATTTTTATTTTCTATATATA
Found at i:60948097 original size:28 final size:29
Alignment explanation
Indices: 60948059--60948121 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
60948049 GCAACCCAAA
60948059 TTTATTTTTATTTT-TATTTTT-TATATAT
1 TTTATTTTTATTTTCTATTTTTAT-TATAT
*
60948087 TTTATTTTTATTTTCTATTTTTATTTTAT
1 TTTATTTTTATTTTCTATTTTTATTATAT
60948116 TTTATT
1 TTTATT
60948122 GCATGTTAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 14 0.44
29 17 0.53
30 1 0.03
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (29 bp):
TTTATTTTTATTTTCTATTTTTATTATAT
Found at i:60950833 original size:19 final size:20
Alignment explanation
Indices: 60950811--60950849 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
60950801 TCTTAATTTT
*
60950811 ATTTC-TTTTTACAATTTCG
1 ATTTCATTTATACAATTTCG
60950830 ATTTCAATTTATACAATTTC
1 ATTTC-ATTTATACAATTTC
60950850 AACCCCTCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
21 12 0.71
ACGTcount: A:0.28, C:0.15, G:0.03, T:0.54
Consensus pattern (20 bp):
ATTTCATTTATACAATTTCG
Found at i:60956153 original size:4 final size:4
Alignment explanation
Indices: 60956144--60956174 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
60956134 TTCAAACTTC
60956144 AATT AATT AATT AATT AATT AATT AA-T AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT
60956175 CAGAAAATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:60961380 original size:18 final size:18
Alignment explanation
Indices: 60961359--60961407 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
60961349 CTATTATAAC
60961359 TATTTATATATATCATCT
1 TATTTATATATATCATCT
*
60961377 TATTATATATTTAT-ATCT
1 TATT-TATATATATCATCT
60961395 TA-TTATATATATC
1 TATTTATATATATC
60961408 TATATATCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.30
17 1 0.04
18 10 0.37
19 8 0.30
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTATATATATCATCT
Found at i:60961575 original size:30 final size:29
Alignment explanation
Indices: 60961540--60961596 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
60961530 TTTTATATAT
*
60961540 ATATACATACTTACACTGTTTTATTTTACG
1 ATATACATACTTACA-TCTTTTATTTTACG
*
60961570 ATATACATACTTATATCTTTTATTTTA
1 ATATACATACTTACATCTTTTATTTTA
60961597 TGTAATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.32, C:0.14, G:0.04, T:0.51
Consensus pattern (29 bp):
ATATACATACTTACATCTTTTATTTTACG
Found at i:60965808 original size:11 final size:11
Alignment explanation
Indices: 60965788--60965874 Score: 72
Period size: 11 Copynumber: 7.8 Consensus size: 11
60965778 ACAATGGAGG
*
60965788 CAAAATAAAAA
1 CAAAAAAAAAA
60965799 C-AAAAAAAAA
1 CAAAAAAAAAA
60965809 CAAAAAAGAGAAA
1 CAAAAAA-A-AAA
**
60965822 -AAAAGAGCAAA
1 CAAAA-AAAAAA
*
60965833 -AAAAACAAAA
1 CAAAAAAAAAA
*
60965843 CAAAATAAAAA
1 CAAAAAAAAAA
60965854 CAAAATAAAAAA
1 CAAAA-AAAAAA
60965866 CAAAAAAAA
1 CAAAAAAAA
60965875 CTCTACCGGG
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
10 13 0.21
11 30 0.48
12 15 0.24
13 4 0.06
ACGTcount: A:0.83, C:0.09, G:0.05, T:0.03
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:60966329 original size:17 final size:17
Alignment explanation
Indices: 60966307--60966339 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
60966297 ACTTCACTTG
60966307 AAAAAAA-AAAGAGAAAT
1 AAAAAAAGAAA-AGAAAT
60966324 AAAAAAAGAAAAGAAA
1 AAAAAAAGAAAAGAAA
60966340 AGAAGAACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (17 bp):
AAAAAAAGAAAAGAAAT
Found at i:60966877 original size:108 final size:108
Alignment explanation
Indices: 60966688--60966884 Score: 290
Period size: 108 Copynumber: 1.8 Consensus size: 108
60966678 TCCCATTTTG
* *
60966688 TAGCAAAATTTGCTATCTTGATTAATTTTTTCATTTAGGGCTTTGCTCTCAATAAATTTCCATCT
1 TAGCAAAATTTGCTATCTTGATTAATTTTTTCATTTAGAGCTTTGCTCTCAAAAAATTTCCATCT
60966753 TATCCATTGTGATAATCTTTTTCATCTTATTCATCTCATATCT
66 TATCCATTGTGATAATCTTTTTCATCTTATTCATCTCATATCT
* * * *
60966796 TAGCAAAATTTGCTATCTTGATTGATTTATTT-GTTTAGAGTTTTTCTCTCAACAAAATTT-CAT
1 TAGCAAAATTTGCTATCTTGATTAATTT-TTTCATTTAGAGCTTTGCTCTCAA-AAAATTTCCAT
* *
60966859 CTTGTCCATTTTGATAATCTTTTTCA
64 CTTATCCATTGTGATAATCTTTTTCA
60966885 AGCGTTTTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
108 70 0.89
109 9 0.11
ACGTcount: A:0.25, C:0.17, G:0.09, T:0.49
Consensus pattern (108 bp):
TAGCAAAATTTGCTATCTTGATTAATTTTTTCATTTAGAGCTTTGCTCTCAAAAAATTTCCATCT
TATCCATTGTGATAATCTTTTTCATCTTATTCATCTCATATCT
Found at i:60967845 original size:46 final size:46
Alignment explanation
Indices: 60967779--60968511 Score: 1030
Period size: 46 Copynumber: 15.9 Consensus size: 46
60967769 TAGAAGCAGC
* *
60967779 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATTGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGT
* * * * *
60967825 AGAACTTGTCTTCCTATATTTGGCAGCGGAGTAGATCGAAAATTGT
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGT
* * * * *
60967871 AGAACTTGCCTTCCTGTATTTGGTAGCGAAGTAGATCGAAGATTGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGT
*
60967917 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGT
* *
60967963 AGATCTTGTCTTCCTGTATTTGGCAGTGGAGTAGATCGAAGATTA-T
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGA-TAGT
*
60968009 AGATCTTGTCTTCCTGTATTTGGCAG-TAGAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTGTATTTGGCAGCGA-AGTAGATCGAAGATAGT
* *
60968055 AGATCTTGTCTTCCTGTATTTGGCAGTGGAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGT
* *
60968101 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGGTCGAAGATTA-C
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGA-TAGT
* * *
60968147 AGATCTTGTCTTCCTGTATTTGGCAGTGGAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGT
*
60968193 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTA-AGTCGAAGATTA-C
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGA-TCGAAGA-TAGT
* * *
60968239 AGATCTTGTCTTCCTATATTTGGCAGCGGAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGT
* *
60968285 AGATCTTGTCTTCCTGTATTTGGCAGTGGAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGT
*
60968331 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGGTCGAAGATTA-T
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGA-TAGT
* *
60968377 AGATCTTGTCTTCCTATATTTGGCAGCGGAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGT
* *
60968423 AGATCTTGTCTTCCTGTATTTGGCAGC-AGAGCAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGA-AGTAGATCGAAGATAGT
* *
60968469 AGGTCTTATCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGAT
1 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGAT
60968512 TGCAGATTCT
Statistics
Matches: 622, Mismatches: 51, Indels: 28
0.89 0.07 0.04
Matches are distributed among these distances:
45 9 0.01
46 603 0.97
47 10 0.02
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (46 bp):
AGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGT
Found at i:60968874 original size:128 final size:128
Alignment explanation
Indices: 60968732--60969418 Score: 1043
Period size: 128 Copynumber: 5.4 Consensus size: 128
60968722 TATTTAAGCC
* * * *
60968732 ATCAGTCCTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAACCCCAGATCTTATCTCTCTGAAG
1 ATCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAG
* *
60968797 TTGCAGTAGAGCAGATCGCATCTAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAA
66 TTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACGAAAGAA
* * *
60968860 ATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAACAAATCTTATCTCTCTGAAG
1 ATCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAG
60968925 TTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACGAAAGAA
66 TTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACGAAAGAA
* * * * *
60968988 ATCAATCCTATCTCTCTGAAGTTGCAATAGAGCAGATTAAAACCACAGATCTTATCTCTCTAAAG
1 ATCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAG
** * *
60969053 TTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAAAAGTAATGGAGTAGACGGAAGAA
66 TTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACGAAAGAA
* * *
60969116 ATCAATCCTATCTCCCTGAAGTTACAGTGGGGCGGATTAAAACCCCAGATCTTATCTCTCTGAAG
1 ATCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAG
* *
60969181 TTGCAATAGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACGAAAGAA
66 TTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACGAAAGAA
* *
60969244 ATCAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTTAAG
1 ATCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAG
* * * ** * *
60969309 TTACAGTAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC-AGAAGAA
66 TTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCT-AAGCAGTAGTGGAGTAGACGA-AAGAA
* *
60969373 ACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATGAAAACCAC
1 ATCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAC
60969419 GAATCTCGTC
Statistics
Matches: 508, Mismatches: 49, Indels: 3
0.91 0.09 0.01
Matches are distributed among these distances:
128 445 0.88
129 63 0.12
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (128 bp):
ATCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAG
TTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACGAAAGAA
Found at i:60969351 original size:41 final size:44
Alignment explanation
Indices: 60968740--60969418 Score: 186
Period size: 44 Copynumber: 15.9 Consensus size: 44
60968730 CCATCAGTCC
** ** *
60968740 TATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAACCCCAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCT
* * * *** * *
60968784 TATCTCTCTGAAGTTGCAGTAGAGCAGA-TCGCATC-TAG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCT
* * ** *
60968825 TATCTCCCT-AAG-CAGTAGTGGAGCAGACGAAAGA-AATCA-ATCT
1 TATCTCCCTGAAGTTA-CAGTGGAGCAGATTAAA-ACCA-CAGATCT
* * * *
60968868 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAACAAATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCT
* * * *** *
60968912 TATCTCTCTGAAGTTGCAGTAGAGCAGA-TCGCATCA-AG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCT
* * * ** * *
60968953 TATCTCCCT-AAG-CAGTAGTGGAGTAGACGAAAGA-AATCA-ATCC
1 TATCTCCCTGAAGTTA-CAGTGGAGCAGATTAAA-ACCA-CAGATCT
* * * *
60968996 TATCTCTCTGAAGTTGCAATAGAGCAGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCT
* * * * *** *
60969040 TATCTCTCTAAAGTTGCAGTAGAGCAGA-TCGCATCA-AG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCT
* * ** *
60969081 TATCTCCCTAAAAAG-TA-A-TGGAGTAGACGGAAGAA--ATCA-ATCC
1 TATCTCCCT--GAAGTTACAGTGGAGCAGA-TTAA-AACCA-CAGATCT
* * *
60969124 TATCTCCCTGAAGTTACAGTGGGGCGGATTAAAACCCCAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCT
* * * * *** *
60969168 TATCTCTCTGAAGTTGCAATAGAGCAGA-TCGCATC-CAG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCT
* * * ** * *
60969209 TATCTCCCT-AAG-CAGTAGTGGAGTAGACGAAAGA-AATCA-ATCC
1 TATCTCCCTGAAGTTA-CAGTGGAGCAGATTAAA-ACCA-CAGATCT
*
60969252 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCT
* * * * * * *
60969296 TATCTCTCTTAAGTTACAGTAGAGCAGA-TCACATC-TAG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCT
* ** * *
60969337 TATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAAC-CA-ATCC
1 TATCTCCCTGAAGTTACAGTGGAGCAGA-TTAA-AACCACAGATCT
* * *
60969381 TATCTCCCTGAAGTTGCAGTGGAGCGGATGAAAACCAC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCAC
60969419 GAATCTCGTC
Statistics
Matches: 452, Mismatches: 134, Indels: 99
0.66 0.20 0.14
Matches are distributed among these distances:
40 43 0.10
41 77 0.17
42 21 0.05
43 90 0.20
44 220 0.49
45 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (44 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCT
Done.