Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 215 of 230
Found at i:63824384 original size:13 final size:13
Alignment explanation
Indices: 63824366--63824390 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63824356 TTTTACTTTG
63824366 TTTTAATTTTAAT
1 TTTTAATTTTAAT
63824379 TTTTAATTTTAA
1 TTTTAATTTTAA
63824391 AATCTTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTAATTTTAAT
Found at i:63826455 original size:20 final size:22
Alignment explanation
Indices: 63826347--63826575 Score: 118
Period size: 21 Copynumber: 10.3 Consensus size: 22
63826337 CAAATGTATA
* *
63826347 TTTTAAATGTTTTATAATATTAT
1 TTTTTAATATTTTA-AATATTAT
*
63826370 TTTTTAAAAATTTTAAATA-TAT
1 TTTTT-AATATTTTAAATATTAT
63826392 TTTTCTAA-A-TTTAAATATTAT
1 TTTT-TAATATTTTAAATATTAT
63826413 TTTTTAAT-TTTTAAATATTAT
1 TTTTTAATATTTTAAATATTAT
* *
63826434 TTTTTAATATTATAAAATATTTAA
1 TTTTTAATATT-TTAAATA-TTAT
** * * * *
63826458 AATATATTATTTTTAAAAATATGAC
1 TTTTTAATA-TTTT-AA-ATATTAT
* * *
63826483 CTTTCAA-A-TTT-ATTATT-T
1 TTTTTAATATTTTAAATATTAT
63826501 GTTTTATAATATTTTAAATA-TAT
1 -TTTT-TAATATTTTAAATATTAT
* * *
63826524 ATTTAAAAATTTTTAAATA-TAT
1 TTTTTAATA-TTTTAAATATTAT
*
63826546 TTTTTAAAATTTTAAATATATAT
1 TTTTTAATATTTTAAATAT-TAT
63826569 TTTTTAA
1 TTTTTAA
63826576 ATTATTTTTA
Statistics
Matches: 158, Mismatches: 28, Indels: 40
0.70 0.12 0.18
Matches are distributed among these distances:
19 6 0.04
20 14 0.09
21 41 0.26
22 40 0.25
23 29 0.18
24 17 0.11
25 8 0.05
26 3 0.02
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (22 bp):
TTTTTAATATTTTAAATATTAT
Found at i:63826552 original size:23 final size:23
Alignment explanation
Indices: 63826512--63826593 Score: 96
Period size: 22 Copynumber: 3.6 Consensus size: 23
63826502 TTTTATAATA
*
63826512 TTTTAAATATA-TATTTAAAAAT
1 TTTTAAATATATTTTTTAAAAAT
63826534 TTTTAAATATATTTTTT-AAAAT
1 TTTTAAATATATTTTTTAAAAAT
* *
63826556 TTTAAATATATATTTTTTAAATTAT
1 TTTTAA-ATATATTTTTTAAA-AAT
*
63826581 TTTTAAAGATATT
1 TTTTAAATATATT
63826594 CAAACATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
22 21 0.41
23 15 0.29
24 8 0.16
25 7 0.14
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (23 bp):
TTTTAAATATATTTTTTAAAAAT
Found at i:63826578 original size:22 final size:22
Alignment explanation
Indices: 63826502--63826571 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
63826492 TTATTATTTG
*
63826502 TTTTATAATATTTTAAATATATA
1 TTTTA-AAAATTTTAAATATATA
63826525 -TTTAAAAATTTTTAAATATAT-
1 TTTTAAAAA-TTTTAAATATATA
*
63826546 TTTTTAAAATTTTAAATATATA
1 TTTTAAAAATTTTAAATATATA
63826568 TTTT
1 TTTT
63826572 TTAAATTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
21 15 0.36
22 27 0.64
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTAAAAATTTTAAATATATA
Found at i:63830444 original size:43 final size:43
Alignment explanation
Indices: 63830397--63830496 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 43
63830387 GACAGGGTCA
63830397 TACACATAAACACAAGTCGATGCCAACATCCCAGACGTGGCCT
1 TACACATAAACACAAGTCGATGCCAACATCCCAGACGTGGCCT
* * * *
63830440 TACACGTAATA-ACAAGTCGATGTCAACGTCCCAGACGTGGTCT
1 TACACATAA-ACACAAGTCGATGCCAACATCCCAGACGTGGCCT
63830483 TACACA-AAATCACA
1 TACACATAAA-CACA
63830497 TATTGGAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.02
42 2 0.04
43 45 0.92
44 1 0.02
ACGTcount: A:0.36, C:0.29, G:0.16, T:0.19
Consensus pattern (43 bp):
TACACATAAACACAAGTCGATGCCAACATCCCAGACGTGGCCT
Found at i:63836949 original size:21 final size:20
Alignment explanation
Indices: 63836902--63836946 Score: 74
Period size: 19 Copynumber: 2.2 Consensus size: 20
63836892 CAAACCCCAC
63836902 CTTCTTAAATAGAATGTTCTT
1 CTTCTTAAATA-AATGTTCTT
63836923 CTTCTTAAAT-AATGTTCTT
1 CTTCTTAAATAAATGTTCTT
63836942 CTTCT
1 CTTCT
63836947 CTTTTTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 14 0.58
21 10 0.42
ACGTcount: A:0.24, C:0.18, G:0.07, T:0.51
Consensus pattern (20 bp):
CTTCTTAAATAAATGTTCTT
Found at i:63837329 original size:24 final size:25
Alignment explanation
Indices: 63837283--63837329 Score: 62
Period size: 23 Copynumber: 1.9 Consensus size: 25
63837273 TTACCCAATC
*
63837283 ATAAAAATTACAAATAAATTAATAA
1 ATAAAAATTACAAAAAAATTAATAA
63837308 ATAAAAA-TA-AAAAAAATATAAT
1 ATAAAAATTACAAAAAAAT-TAAT
63837330 TTTCGGGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 6 0.30
25 7 0.35
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (25 bp):
ATAAAAATTACAAAAAAATTAATAA
Found at i:63837738 original size:13 final size:13
Alignment explanation
Indices: 63837703--63837761 Score: 82
Period size: 13 Copynumber: 4.2 Consensus size: 13
63837693 GAATATCTTT
63837703 AAAAATAATTTTA
1 AAAAATAATTTTA
63837716 AAAATCATAATTTTA
1 AAAA--ATAATTTTA
63837731 AAAAATAATTTTA
1 AAAAATAATTTTA
63837744 AAAAATATATATTTA
1 AAAAATA-AT-TTTA
63837759 AAA
1 AAA
63837762 TTAAAAATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
13 20 0.48
14 2 0.05
15 20 0.48
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (13 bp):
AAAAATAATTTTA
Found at i:63837758 original size:28 final size:28
Alignment explanation
Indices: 63837695--63837761 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 28
63837685 AAACGTTTGA
*
63837695 ATATCTTT-AAAAATAATTTTAAAAATC
1 ATATATTTAAAAAATAATTTTAAAAATC
63837722 ATA-ATTTTAAAAAATAATTTTAAAAAAT-
1 ATATA-TTTAAAAAATAATTTT-AAAAATC
63837750 ATATATTTAAAA
1 ATATATTTAAAA
63837762 TTAAAAATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
27 6 0.17
28 22 0.63
29 7 0.20
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (28 bp):
ATATATTTAAAAAATAATTTTAAAAATC
Found at i:63837773 original size:19 final size:20
Alignment explanation
Indices: 63837744--63837782 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
63837734 AATAATTTTA
63837744 AAAAATATATATTTAAAATT
1 AAAAATATATATTTAAAATT
63837764 AAAAAT-TATATTTAAAATT
1 AAAAATATATATTTAAAATT
63837783 TTTAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAAATATATATTTAAAATT
Found at i:63837780 original size:13 final size:14
Alignment explanation
Indices: 63837695--63837761 Score: 59
Period size: 15 Copynumber: 4.8 Consensus size: 14
63837685 AAACGTTTGA
63837695 ATATCTTTAAAAA-T
1 ATAT-TTTAAAAATT
*
63837709 A-ATTTTAAAAATC
1 ATATTTTAAAAATT
*
63837722 ATAATTTTAAAAAAT
1 AT-ATTTTAAAAATT
*
63837737 A-ATTTTAAAAAAT
1 ATATTTTAAAAATT
63837750 ATATATTTAAAA
1 ATAT-TTTAAAA
63837762 TTAAAAATTA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
12 8 0.18
13 16 0.36
14 3 0.07
15 18 0.40
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (14 bp):
ATATTTTAAAAATT
Found at i:63837789 original size:21 final size:21
Alignment explanation
Indices: 63837745--63837813 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 21
63837735 ATAATTTTAA
*
63837745 AAAATATATATTTAAAA--TTA
1 AAAAT-TATATTTAAAATTTTT
63837765 AAAATTATATTTAAAATTTTT
1 AAAATTATATTTAAAATTTTT
*
63837786 AAAA-TATGCATTTAAAATATTAT
1 AAAATTAT--ATTTAAAAT-TTTT
63837809 AAAAT
1 AAAAT
63837814 AAATAATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 11 0.27
20 8 0.20
21 6 0.15
22 9 0.22
23 7 0.17
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (21 bp):
AAAATTATATTTAAAATTTTT
Found at i:63837989 original size:25 final size:23
Alignment explanation
Indices: 63837972--63838017 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
63837962 TAAAACCAAT
*
63837972 AATAAATAAA-ACAAATAAAATA
1 AATAAATAAAGACAAATAAAAAA
63837994 AATAAATAAAGGACAAATAAAAAA
1 AATAAATAAA-GACAAATAAAAAA
63838018 CTTAAAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.48
24 11 0.52
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.15
Consensus pattern (23 bp):
AATAAATAAAGACAAATAAAAAA
Found at i:63840675 original size:114 final size:111
Alignment explanation
Indices: 63840362--63841028 Score: 581
Period size: 114 Copynumber: 5.9 Consensus size: 111
63840352 TTACCACAAT
* * * * * *
63840362 GCGCCGCGAAATCTCTTAACCAAAACGC-TGTGTTTTCGTCTTGATGTATCTTAAAATTAGTGGC
1 GCGCCGCAAAATATCTTAA-CAAAACGCAT-AGTTTTGGTCTTGATGTAT-ATAGAATTAGTGGC
* * ** * * *
63840426 GTTTACGCG-AAACGCCATTAAAGGACAGTAATAGCGGCGCTTTCTGGAA
63 GCTTATG-GTAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAA
* * * * *
63840475 ACGCCGCAAAATAGCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTATCTTAGAATTAGTGGCG
1 GCGCCGCAAAATATCTTAA-CAAAACGCATAGTTTTGGTCTTGATGTAT-ATAGAATTAGTGGCG
* * * * * * *
63840539 TTTATAGGAAAACGCCGTTAAAGTACAGTAATAGCGACGCTTTATGGAA
64 CTTAT-GGTAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAA
* * * * * *
63840588 GCGCCGCAAACTATCTTAAGCGAAACACATCGTTTTGGTCTTGATTTATACTAGAACTAGTGGCG
1 GCGCCGCAAAATATCTTAA-CAAAACGCATAGTTTTGGTCTTGATGTATA-TAGAATTAGTGGCG
* * * **
63840653 CATATGGTCAAACGCCGCTAAAGAATAGTATTAGCGGCGATTTGTAGCTA
64 CTTATGGT-AAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGT-GGAA
* ** * * *
63840703 GCGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGC
1 GCGCCGCAAAATATCTTAAC-AAAACGCATAGTTTTGGTCTTGATGTATATAGAATTAGTGGCGC
* *
63840768 TTACGGTAAACCGCCGCTAAAGAATATTAATAGCGGCGCTTTGTGAGAA
65 TTATGGTAAA-CGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTG-GAA
* * *
63840817 GCGCCGCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCG
1 GCGCCGCAAAATATCTTAA-CAAAACGCATAGTTTTGGTCTTGATGTATA-TAGAATTAGTGGCG
* * * * **
63840882 CTTA--GTGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTGTAGCTA
64 CTTATGGT-AAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGT-GGAA
* * *
63840930 GCGCCGCAAAATATCTTAACAAAAACGCAGT-GTTTTGATCTTAATGTATATAAAATTAGTGGCG
1 GCGCCGCAAAATATCTTAAC-AAAACGCA-TAGTTTTGGTCTTGATGTATATAGAATTAGTGGCG
* *
63840994 CTTACGGTAAACCGCCGCTAAAGAATATTAATAGC
64 CTTATGGTAAA-CGCCGCTAAAGAATAGTAATAGC
63841029 AGCAAAATAT
Statistics
Matches: 454, Mismatches: 81, Indels: 37
0.79 0.14 0.06
Matches are distributed among these distances:
112 52 0.11
113 167 0.37
114 175 0.39
115 60 0.13
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (111 bp):
GCGCCGCAAAATATCTTAACAAAACGCATAGTTTTGGTCTTGATGTATATAGAATTAGTGGCGCT
TATGGTAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAA
Found at i:63840930 original size:227 final size:226
Alignment explanation
Indices: 63840362--63841259 Score: 843
Period size: 227 Copynumber: 4.0 Consensus size: 226
63840352 TTACCACAAT
* * ** * * * ** *
63840362 GCGCCGCGAAATCTCTTAACCAAAACGC-TGTGTTTTCGTCTTGATGTATCTTAAAATTAGTGGC
1 GCGCCGCAAAATATCTTAACCAAAACGCAT-AATTTTGGCCTCGATGTATAGTAGAATTAGTGGC
* * * * * * * * * * * *
63840426 GTTTACGCGAAACGCCATTAAAGGACAGTAATAGCGGCGCTTTCT-GGAAACGCCGCAAAATAGC
65 GCTTA-GTGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTGTAGCAAGCGCCACAAAATATC
* * * * * * * * *
63840490 TTAACCAAAACGCAGAG-TTTGGTCTTGAGGTATCTTAGAATTAGTGGCGTTTATAGG-AAAACG
129 TTAACAAAAACGCAGCGTTTTGATCTTAATGTAT-ATAAAATTAGTGGCGCTTA-CGGTAAAACG
* * * * *
63840553 CCGTTAAAGTACAGTAATAGCGACGCTTTATGGAA
192 CCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAA
* * * * ** * * * * *
63840588 GCGCCGCAAACTATCTTAAGCGAAACACATCGTTTTGGTCTTGATTTATACTAGAACTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCG
* * * * *
63840653 CATATGGTCAAACGCCGCTAAAGAATAGTATTAGCGGCGATTTGTAGCTAGCGCCACAAAATATC
66 C-T-TAGTGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTGTAGCAAGCGCCACAAAATATC
*
63840718 TTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGCTTACGGTAAACCGCC
129 TTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGCTTACGGTAAAACGCC
*
63840783 GCTAAAGAATATTAATAGCGGCGCTTTGTGAGAA
194 GCTAAAGAATAGTAATAGCGGCGCTTTGTG-GAA
63840817 GCGCCGCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCG
* *
63840882 CTTAGTGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTGTAGCTAGCGCCGCAAAATATCTT
66 CTTAGTGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTGTAGCAAGCGCCACAAAATATCTT
* *
63840947 AACAAAAACGCAGTGTTTTGATCTTAATGTATATAAAATTAGTGGCGCTTACGGTAAACCGCCGC
131 AACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGCTTACGGTAAAACGCCGC
*
63841012 TAAAGAATATTAATA-----GC--------A
196 TAAAGAATAGTAATAGCGGCGCTTTGTGGAA
63841030 -----GCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCG
* * * * *
63841090 CTTAGTGAAACGCCGTTAAAGCATAGTATTAGCGGCGCTTGGATA-AAAGCGCCACCAAGTATCT
66 CTTAGTGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTG-TAGCAAGCGCCACAAAATATCT
* * * * * ** * * *
63841154 GAACCAAAACGCATCGTTTTGGTCTTGATGTATACTTGATTTAGTGGCGATTTCGGTAAAACGCC
130 TAACAAAAACGCAGCGTTTTGATCTTAATGTATA-TAAAATTAGTGGCGCTTACGGTAAAACGCC
* * * *
63841219 GCTAAAGCATAGTATTAGCGGCGATTTGTTGATA
194 GCTAAAGAATAGTAATAGCGGCGCTTTGTGGA-A
63841253 GCGCCGC
1 GCGCCGC
63841260 GACTTACCAT
Statistics
Matches: 559, Mismatches: 85, Indels: 54
0.80 0.12 0.08
Matches are distributed among these distances:
208 142 0.25
209 40 0.07
213 1 0.00
214 1 0.00
222 2 0.00
223 1 0.00
226 50 0.09
227 171 0.31
228 80 0.14
229 71 0.13
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (226 bp):
GCGCCGCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCG
CTTAGTGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTGTAGCAAGCGCCACAAAATATCTT
AACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGCTTACGGTAAAACGCCGC
TAAAGAATAGTAATAGCGGCGCTTTGTGGAA
Found at i:63841187 original size:208 final size:209
Alignment explanation
Indices: 63840822--63841225 Score: 616
Period size: 208 Copynumber: 1.9 Consensus size: 209
63840812 GAGAAGCGCC
63840822 GCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAG
1 GCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAG
* ** * *
63840887 TGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTGTAGCTAGCGCCGCAAAATATCTTAACAA
66 TGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTGGTAGAAAGCGCCACAAAATATCTGAACAA
* *
63840952 AAACGCAGTGTTTTGATCTTAATGTATA-TAAAATTAGTGGCGCTTACGGTAAACCGCCGCTAAA
131 AAACGCAGTGTTTTGATCTTAATGTATACTAAAATTAGTGGCGATTACGGTAAAACGCCGCTAAA
63841016 GAATATTAATAGCA
196 GAATATTAATAGCA
63841030 GCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAG
1 GCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAG
* * * *
63841095 TGAAACGCCGTTAAAGCATAGTATTAGCGGCGCTTGGATA-AAAGCGCCACCAAGTATCTGAACC
66 TGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTGG-TAGAAAGCGCCACAAAATATCTGAACA
* * ** * *
63841159 AAAACGCA-TCGTTTTGGTCTTGATGTATACTTGATTTAGTGGCGATTTCGGTAAAACGCCGCTA
130 AAAACGCAGT-GTTTTGATCTTAATGTATACTAAAATTAGTGGCGATTACGGTAAAACGCCGCTA
63841223 AAG
194 AAG
63841226 CATAGTATTA
Statistics
Matches: 176, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
207 1 0.01
208 142 0.81
209 33 0.19
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (209 bp):
GCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAG
TGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTGGTAGAAAGCGCCACAAAATATCTGAACAA
AAACGCAGTGTTTTGATCTTAATGTATACTAAAATTAGTGGCGATTACGGTAAAACGCCGCTAAA
GAATATTAATAGCA
Found at i:63841547 original size:14 final size:14
Alignment explanation
Indices: 63841478--63841548 Score: 56
Period size: 14 Copynumber: 5.0 Consensus size: 14
63841468 ACAGTGTAAA
*
63841478 GTTTAAAGTTTAGG
1 GTTTAAGGTTTAGG
* * *
63841492 GTTTACGATGTA-G
1 GTTTAAGGTTTAGG
63841505 GTTTAAGG-TTAGG
1 GTTTAAGGTTTAGG
*
63841518 GTATTAGGGTGTTTAGG
1 GT-TTA-AG-GTTTAGG
63841535 GTTTAAGGTTTAGG
1 GTTTAAGGTTTAGG
63841549 AGTCTGGGGT
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
12 2 0.05
13 10 0.23
14 18 0.42
15 2 0.05
16 4 0.09
17 7 0.16
ACGTcount: A:0.23, C:0.01, G:0.35, T:0.41
Consensus pattern (14 bp):
GTTTAAGGTTTAGG
Found at i:63842715 original size:22 final size:22
Alignment explanation
Indices: 63842689--63842735 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
63842679 ACTATTCCGA
*
63842689 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
63842711 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
63842733 TTA
1 TTA
63842736 TTACAGCCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:63843117 original size:36 final size:36
Alignment explanation
Indices: 63843075--63843190 Score: 114
Period size: 36 Copynumber: 3.2 Consensus size: 36
63843065 GTTGTTATGT
63843075 TCTGAAATATGCTTTGGATTTGAAATAATTTCTGAG
1 TCTGAAATATGCTTTGGATTTGAAATAATTTCTGAG
* ** * * *
63843111 TCTGAAATA--ATTTGTTTTTG--ATTATGTTGTTATG
1 TCTGAAATATGCTTTGGATTTGAAATAAT-TTCTGA-G
*
63843145 TTCTGAAATATGCTTTGGATTTGAAATAATTTTTGAG
1 -TCTGAAATATGCTTTGGATTTGAAATAATTTCTGAG
63843182 TCTGAAATA
1 TCTGAAATA
63843191 ATTTGTTTTT
Statistics
Matches: 61, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
32 4 0.07
33 4 0.07
34 9 0.15
35 9 0.15
36 18 0.30
37 9 0.15
38 4 0.07
39 4 0.07
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (36 bp):
TCTGAAATATGCTTTGGATTTGAAATAATTTCTGAG
Found at i:63843141 original size:71 final size:71
Alignment explanation
Indices: 63843042--63843242 Score: 368
Period size: 71 Copynumber: 2.8 Consensus size: 71
63843032 TGAGTGGATT
63843042 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
63843107 TGAGTC
66 TGAGTC
*
63843113 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTT
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
63843178 TGAGTC
66 TGAGTC
*
63843184 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAATTATGCTTTGG-TTCTGAAAT
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATT-TGAAAT
63843243 CTGGATCTGG
Statistics
Matches: 127, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
70 2 0.02
71 125 0.98
ACGTcount: A:0.26, C:0.05, G:0.18, T:0.51
Consensus pattern (71 bp):
TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
TGAGTC
Found at i:63843397 original size:14 final size:14
Alignment explanation
Indices: 63843378--63843407 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
63843368 ATAAAAGGTT
63843378 TTTAGTTAATCATC
1 TTTAGTTAATCATC
63843392 TTTAGTTAATCATC
1 TTTAGTTAATCATC
63843406 TT
1 TT
63843408 GCTGTTCGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (14 bp):
TTTAGTTAATCATC
Found at i:63844155 original size:29 final size:31
Alignment explanation
Indices: 63844087--63844165 Score: 117
Period size: 29 Copynumber: 2.6 Consensus size: 31
63844077 ATATTTAAAT
*
63844087 TTTAAATTTAATAAATTATTTATAACAATTA
1 TTTAAATTTAATAAATAATTTATAACAATTA
63844118 TTTAAATTTAATAAATAATTTA-AA-AATTA
1 TTTAAATTTAATAAATAATTTATAACAATTA
* *
63844147 TTTAAATTTTATTAATAAT
1 TTTAAATTTAATAAATAAT
63844166 AAATTTATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 22 0.49
30 2 0.04
31 21 0.47
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (31 bp):
TTTAAATTTAATAAATAATTTATAACAATTA
Found at i:63844457 original size:9 final size:9
Alignment explanation
Indices: 63844434--63844669 Score: 117
Period size: 9 Copynumber: 27.9 Consensus size: 9
63844424 ATATATTCAT
63844434 TTACATAAC
1 TTACATAAC
63844443 --ACATAAC
1 TTACATAAC
63844450 TTACATAAC
1 TTACATAAC
*
63844459 TTTCATAA-
1 TTACATAAC
*
63844467 -TACACAAC
1 TTACATAAC
** *
63844475 TTACGCATC
1 TTACATAAC
63844484 TTACATAA-
1 TTACATAAC
*
63844492 -GACATAAC
1 TTACATAAC
*
63844500 TTACAT--G
1 TTACATAAC
*
63844507 TGTAAATAA-
1 T-TACATAAC
* *
63844516 -TACAAAAA
1 TTACATAAC
63844524 TTACATAAC
1 TTACATAAC
*
63844533 TAACATAA-
1 TTACATAAC
*
63844541 -GACATAAC
1 TTACATAAC
*
63844549 TTACATAAG
1 TTACATAAC
*
63844558 TTTCATAA-
1 TTACATAAC
* *
63844566 -TACACATC
1 TTACATAAC
**
63844574 TTACGCAAC
1 TTACATAAC
*
63844583 TTACACAAC
1 TTACATAAC
63844592 TTACATAAC
1 TTACATAAC
*
63844601 TTACATAAG
1 TTACATAAC
*
63844610 TTTCATAA-
1 TTACATAAC
* *
63844618 -TACACATC
1 TTACATAAC
**
63844626 TTACGCAAC
1 TTACATAAC
*
63844635 TTACACAAC
1 TTACATAAC
63844644 TTACATAAC
1 TTACATAAC
63844653 TTACATAAC
1 TTACATAAC
63844662 TTACATAA
1 TTACATAA
63844670 TGTATATCTT
Statistics
Matches: 173, Mismatches: 37, Indels: 34
0.71 0.15 0.14
Matches are distributed among these distances:
7 38 0.22
8 4 0.02
9 131 0.76
ACGTcount: A:0.44, C:0.22, G:0.04, T:0.30
Consensus pattern (9 bp):
TTACATAAC
Found at i:63844475 original size:25 final size:25
Alignment explanation
Indices: 63844434--63844670 Score: 172
Period size: 25 Copynumber: 9.4 Consensus size: 25
63844424 ATATATTCAT
*
63844434 TTACATAACACATAACTTACATAAC
1 TTACATAATACATAACTTACATAAC
* * ** *
63844459 TTTCATAATACACAACTTACGCATC
1 TTACATAATACATAACTTACATAAC
* *
63844484 TTACATAAGACATAACTTACAT--G
1 TTACATAATACATAACTTACATAAC
* * *
63844507 TGTAAATAATACAAAAATTACATAAC
1 T-TACATAATACATAACTTACATAAC
* * *
63844533 TAACATAAGACATAACTTACATAAG
1 TTACATAATACATAACTTACATAAC
* * * **
63844558 TTTCATAATACACATCTTACGCAAC
1 TTACATAATACATAACTTACATAAC
* *
63844583 TTACACAACTTACATAACTTACATAAG
1 TTACATAA--TACATAACTTACATAAC
* * * **
63844610 TTTCATAATACACATCTTACGCAAC
1 TTACATAATACATAACTTACATAAC
*
63844635 TTACACAACTTACATAACTTACATAAC
1 TTACATAA--TACATAACTTACATAAC
63844662 TTACATAAT
1 TTACATAAT
63844671 GTATATCTTG
Statistics
Matches: 153, Mismatches: 52, Indels: 14
0.70 0.24 0.06
Matches are distributed among these distances:
23 1 0.01
24 17 0.11
25 96 0.63
26 1 0.01
27 38 0.25
ACGTcount: A:0.44, C:0.22, G:0.04, T:0.30
Consensus pattern (25 bp):
TTACATAATACATAACTTACATAAC
Found at i:63844545 original size:16 final size:16
Alignment explanation
Indices: 63844526--63844557 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63844516 TACAAAAATT
63844526 ACATAACTAACATAAG
1 ACATAACTAACATAAG
*
63844542 ACATAACTTACATAAG
1 ACATAACTAACATAAG
63844558 TTTCATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.19, G:0.06, T:0.22
Consensus pattern (16 bp):
ACATAACTAACATAAG
Found at i:63844679 original size:52 final size:52
Alignment explanation
Indices: 63844443--63844670 Score: 252
Period size: 52 Copynumber: 4.5 Consensus size: 52
63844433 TTTACATAAC
* * * * *
63844443 ACATAACTTACATAACTTTCATAATACACAACTTACGCATCTTACATAA--G
1 ACATAACTTACATAAGTTTCATAATACACATCTTACGCAACTTACACAACTT
** * ** ** * * *
63844493 ACATAACTTACAT--GTGTAAATAATACAAAAATTACATAACTAACATAA--G
1 ACATAACTTACATAAGT-TTCATAATACACATCTTACGCAACTTACACAACTT
63844542 ACATAACTTACATAAGTTTCATAATACACATCTTACGCAACTTACACAACTT
1 ACATAACTTACATAAGTTTCATAATACACATCTTACGCAACTTACACAACTT
63844594 ACATAACTTACATAAGTTTCATAATACACATCTTACGCAACTTACACAACTT
1 ACATAACTTACATAAGTTTCATAATACACATCTTACGCAACTTACACAACTT
* *
63844646 ACATAACTTACATAACTTACATAAT
1 ACATAACTTACATAAGTTTCATAAT
63844671 GTATATCTTG
Statistics
Matches: 152, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
48 1 0.01
49 38 0.25
50 36 0.24
51 2 0.01
52 75 0.49
ACGTcount: A:0.44, C:0.22, G:0.04, T:0.30
Consensus pattern (52 bp):
ACATAACTTACATAAGTTTCATAATACACATCTTACGCAACTTACACAACTT
Found at i:63848399 original size:21 final size:21
Alignment explanation
Indices: 63848373--63848443 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
63848363 CTACAACTTA
* *
63848373 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
63848394 AAGCAGCGACTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
63848415 AAGCGGAGGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
63848436 AAGCAGAG
1 AAGCAGAG
63848444 CAGAGCAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.45, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:63848909 original size:126 final size:125
Alignment explanation
Indices: 63848769--63849094 Score: 348
Period size: 126 Copynumber: 2.6 Consensus size: 125
63848759 TTTTGTATAA
* * * *
63848769 AAGCGCCACTAAAGAACATGTTCTTTTGCGGCGTTTTTAAAAAATGCCACTAAAGAACATGTTCT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTAAAAAACGCCACTAAAGAACATGGTCT
63848834 TTAGCGGCGATTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCC-CTT
66 TTAGCGGCG-TTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCTC-T
*** * *
63848895 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGGTC
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTAAAAAACGCCACTAAAGAACATGGTC
******* * * **
63848960 TTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
65 TTTAGCGGCGTTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCTCT
* * *** * * *
63849021 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTTCTAAGCGCCGCTAAAGAACATGGTA
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGC-GTTTTTAAAAAACGCCACTAAAGAACATGGTC
*
63849086 TTTAACGGC
65 TTTAGCGGC
63849095 CTTTTTGTTT
Statistics
Matches: 172, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
126 137 0.80
127 35 0.20
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (125 bp):
AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTAAAAAACGCCACTAAAGAACATGGTCT
TTAGCGGCGTTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCTCT
Found at i:63848920 original size:42 final size:41
Alignment explanation
Indices: 63848769--63849082 Score: 308
Period size: 42 Copynumber: 7.5 Consensus size: 41
63848759 TTTTGTATAA
* * ****
63848769 AAGCGCCACTAAAGAACATGTTCTTTTGCGGCGTTTTTAAA
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCCTT
** * ******
63848810 AAATGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGAAAAA
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG-TT-TTCCTT
* *
63848853 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCTT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTT-CCTT
63848895 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCC-T
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG--TTTTCCTT
*
63848937 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCC-T
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG--TTTTCCTT
* **
63848979 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCCT-T
* * **
63849021 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTTCT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCCT-T
63849063 AAGCGCCGCTAAAGAACATG
1 AAGCGCCGCTAAAGAACATG
63849083 GTATTTAACG
Statistics
Matches: 244, Mismatches: 22, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
40 4 0.02
41 30 0.12
42 171 0.70
43 35 0.14
44 4 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCCTT
Found at i:63849100 original size:42 final size:42
Alignment explanation
Indices: 63848856--63849100 Score: 384
Period size: 42 Copynumber: 5.8 Consensus size: 42
63848846 AGAAAAAAAA
* *
63848856 CGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTCCCTTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCC-TAAG
*
63848898 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCCTAAG
63848940 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCCTAAG
*
63848982 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCCTAAG
* * *
63849024 CGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCCTAAG
* * *
63849066 CGCCGCTAAAGAACATGGTATTTAACGGCCTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
63849101 GTTTGTAAAC
Statistics
Matches: 192, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
42 186 0.97
43 6 0.03
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCCTAAG
Found at i:63849235 original size:22 final size:22
Alignment explanation
Indices: 63849192--63849235 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
63849182 TAGTGGCGTT
* **
63849192 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAACGCCGCTAAAAACCTA
63849214 AAAAAACGCCGCTAAAAACCTA
1 AAAAAACGCCGCTAAAAACCTA
63849236 TTTTGGTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.27, G:0.16, T:0.09
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAAACCTA
Found at i:63868943 original size:12 final size:12
Alignment explanation
Indices: 63868914--63868951 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
63868904 AGGAATACTG
63868914 TAATAATAATA-
1 TAATAATAATAT
63868925 TATATAATAATAT
1 TA-ATAATAATAT
*
63868938 TAATAATCATAT
1 TAATAATAATAT
63868950 TA
1 TA
63868952 TAGTGAGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 2 0.08
12 20 0.83
13 2 0.08
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (12 bp):
TAATAATAATAT
Found at i:63876563 original size:9 final size:9
Alignment explanation
Indices: 63876549--63876629 Score: 60
Period size: 9 Copynumber: 8.7 Consensus size: 9
63876539 TTTAAAATAC
63876549 TTTTTTAAA
1 TTTTTTAAA
63876558 TTTTTTAAA
1 TTTTTTAAA
63876567 --TTTTAAA
1 TTTTTTAAA
63876574 TTTTTTTAAAA
1 -TTTTTT-AAA
63876585 TTTTTTTAAATA
1 -TTTTTT-AA-A
*
63876597 CTTTTTTTAA
1 -TTTTTTAAA
*
63876607 TTTTTTTAA
1 TTTTTTAAA
*
63876616 -TTTTAAAA
1 TTTTTTAAA
63876624 TTTTTT
1 TTTTTT
63876630 TAAAATACTT
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
7 7 0.11
8 6 0.10
9 22 0.36
10 5 0.08
11 14 0.23
12 7 0.11
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:63876570 original size:17 final size:19
Alignment explanation
Indices: 63876550--63876589 Score: 59
Period size: 16 Copynumber: 2.3 Consensus size: 19
63876540 TTAAAATACT
63876550 TTTTTAAA-TTTTTT-AAA
1 TTTTTAAATTTTTTTAAAA
63876567 -TTTTAAATTTTTTTAAAA
1 TTTTTAAATTTTTTTAAAA
63876585 TTTTT
1 TTTTT
63876590 TTAAATACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 7 0.35
17 6 0.30
18 3 0.15
19 4 0.20
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTTAAATTTTTTTAAAA
Found at i:63876587 original size:11 final size:11
Alignment explanation
Indices: 63876567--63876635 Score: 64
Period size: 11 Copynumber: 6.8 Consensus size: 11
63876557 ATTTTTTAAA
63876567 TTTT-AAATTT
1 TTTTAAAATTT
63876577 TTTTAAAATTT
1 TTTTAAAATTT
63876588 TTTTAAATACTTT
1 TTTTAAA-A-TTT
63876601 TTTT--AATTT
1 TTTTAAAATTT
63876610 TTTT--AA---
1 TTTTAAAATTT
63876616 TTTTAAAATTT
1 TTTTAAAATTT
63876627 TTTTAAAAT
1 TTTTAAAAT
63876636 ACTTTTTTTA
Statistics
Matches: 51, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
6 4 0.08
8 2 0.04
9 9 0.18
10 5 0.10
11 23 0.45
12 1 0.02
13 7 0.14
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:63876603 original size:50 final size:51
Alignment explanation
Indices: 63876534--63876635 Score: 156
Period size: 50 Copynumber: 2.0 Consensus size: 51
63876524 TTTTTATTTT
63876534 TTTTATTTAAAATACTTTTTTAAATTTTTTAAATTTT-AAATTTTTTTAAAA
1 TTTTATTTAAAATACTTTTTT-AATTTTTTAAATTTTAAAATTTTTTTAAAA
*
63876585 TTTT-TTT-AAATACTTTTTTTAATTTTTTTAATTTTAAAATTTTTTTAAAA
1 TTTTATTTAAAATAC-TTTTTTAATTTTTTAAATTTTAAAATTTTTTTAAAA
63876635 T
1 T
63876636 ACTTTTTTTA
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
49 20 0.42
50 24 0.50
51 4 0.08
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (51 bp):
TTTTATTTAAAATACTTTTTTAATTTTTTAAATTTTAAAATTTTTTTAAAA
Found at i:63876612 original size:49 final size:50
Alignment explanation
Indices: 63876534--63876668 Score: 166
Period size: 49 Copynumber: 2.6 Consensus size: 50
63876524 TTTTTATTTT
*
63876534 TTTTATTTAAAATACTTTTTTAAATTTTTTAAATTTT-AAATTTTTTTAAAA
1 TTTT-TTT-AAATACTTTTTTTAATTTTTTAAATTTTAAAATTTTTTTAAAA
*
63876585 TTTTTTTAAATACTTTTTTTAATTTTTTTAATTTTAAAATTTTTTTAAAA
1 TTTTTTTAAATACTTTTTTTAATTTTTTAAATTTTAAAATTTTTTTAAAA
* * *
63876635 TACTTTTTTTAAT-TTTTATTTTAATTTTTAAAAT
1 T--TTTTTTAAATACTTT-TTTTAATTTTTTAAAT
63876669 AAATTTTTGG
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
49 26 0.35
50 18 0.24
51 7 0.09
52 23 0.31
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (50 bp):
TTTTTTTAAATACTTTTTTTAATTTTTTAAATTTTAAAATTTTTTTAAAA
Found at i:63876665 original size:50 final size:48
Alignment explanation
Indices: 63876534--63876663 Score: 154
Period size: 50 Copynumber: 2.6 Consensus size: 48
63876524 TTTTTATTTT
*
63876534 TTTTATTTAAAATACTTTTTTAAATTTTTTAAATTTTAAATTTTTTTAAAA
1 TTTT-TTT-AAATACTTTTTTTAATTTTTT-AATTTTAAATTTTTTTAAAA
63876585 TTTTTTTAAATACTTTTTTTAATTTTTTTAATTTTAAAATTTTTTTAAAA
1 TTTTTTTAAATACTTTTTTTAA-TTTTTTAATTTT-AAATTTTTTTAAAA
* *
63876635 TACTTTTTTTAAT-TTTTATTTTAATTTTT
1 T--TTTTTTAAATACTTT-TTTTAATTTTT
63876664 AAAATAAATT
Statistics
Matches: 71, Mismatches: 3, Indels: 10
0.85 0.04 0.12
Matches are distributed among these distances:
49 20 0.28
50 24 0.34
51 12 0.17
52 15 0.21
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (48 bp):
TTTTTTTAAATACTTTTTTTAATTTTTTAATTTTAAATTTTTTTAAAA
Found at i:63883116 original size:22 final size:24
Alignment explanation
Indices: 63883090--63883144 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
63883080 TTTATAAATT
63883090 TAATTTAA-AAAATATAAT-ACAA
1 TAATTTAAGAAAATATAATAACAA
* * *
63883112 TAATTTCAAGCATATTTAATAACAA
1 TAATTT-AAGAAAATATAATAACAA
63883137 TAATTTAA
1 TAATTTAA
63883145 TCATAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 6 0.22
23 2 0.07
24 9 0.33
25 10 0.37
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (24 bp):
TAATTTAAGAAAATATAATAACAA
Found at i:63887384 original size:25 final size:25
Alignment explanation
Indices: 63887333--63887385 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
63887323 ATTTCTCACC
* *
63887333 CAAATTGACATCAACCTAGCCCCAA
1 CAAATTGACATCAACCAAGCCACAA
*
63887358 CAAATTGCACATCAA-CAAGCCATAA
1 CAAATTG-ACATCAACCAAGCCACAA
63887383 CAA
1 CAA
63887386 GGCATTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.45, C:0.32, G:0.08, T:0.15
Consensus pattern (25 bp):
CAAATTGACATCAACCAAGCCACAA
Found at i:63892995 original size:51 final size:51
Alignment explanation
Indices: 63892882--63893198 Score: 382
Period size: 50 Copynumber: 6.3 Consensus size: 51
63892872 CTTGCATATG
* * *
63892882 ATCACTTATCACTTTTCACTGATCAGATAAGTGTAGTTG-GGCTACCACTT
1 ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
*
63892932 ATCACTTATCACTTGTCACTGATCAAATAAGTGTAGCTGAAGCT---AC--
1 ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
*
63892978 --CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTG-GGCTACCACTT
1 ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
*
63893026 ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
1 ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
* * *
63893077 ATCACTTATCACTTGTCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTATCACTT
1 ATCAC-T-T-A----TCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
** * * *
63893135 ATCACTTGCCACTTTTCACTGATTAGATAAGTGTAGCTGAAGCTATCACTT
1 ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
63893186 ATCACTTATCACT
1 ATCACTTATCACT
63893199 GATCAGAAGT
Statistics
Matches: 233, Mismatches: 18, Indels: 31
0.83 0.06 0.11
Matches are distributed among these distances:
43 3 0.01
44 36 0.15
46 2 0.01
48 2 0.01
50 72 0.31
51 67 0.29
52 1 0.00
53 1 0.00
54 1 0.00
56 1 0.00
57 1 0.00
58 46 0.20
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (51 bp):
ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
Found at i:63893001 original size:94 final size:94
Alignment explanation
Indices: 63892884--63893089 Score: 367
Period size: 94 Copynumber: 2.2 Consensus size: 94
63892874 TGCATATGAT
* *
63892884 CACTTATCACTTTTCACTGATCAGATAAGTGTAGTTGGGCTACCACTTATCACTTATCACTTGTC
1 CACTTATCACTTATCACTGATCAGATAAGTGTAGCTGGGCTACCACTTATCACTTATCACTTGTC
*
63892949 ACTGATCAAATAAGTGTAGCTGAAGCTAC
66 ACTGATCAAATAAGTGTAGCTAAAGCTAC
*
63892978 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGGGCTACCACTTATCACTTATCACTTGTC
1 CACTTATCACTTATCACTGATCAGATAAGTGTAGCTGGGCTACCACTTATCACTTATCACTTGTC
*
63893043 ACTGATCAGATAAGTGTAGCTAAAGCTAC
66 ACTGATCAAATAAGTGTAGCTAAAGCTAC
63893072 CACTTATCACTTATCACT
1 CACTTATCACTTATCACT
63893090 TGTCACTTGT
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 107 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.33
Consensus pattern (94 bp):
CACTTATCACTTATCACTGATCAGATAAGTGTAGCTGGGCTACCACTTATCACTTATCACTTGTC
ACTGATCAAATAAGTGTAGCTAAAGCTAC
Found at i:63893088 original size:58 final size:57
Alignment explanation
Indices: 63892978--63893203 Score: 253
Period size: 58 Copynumber: 4.2 Consensus size: 57
63892968 CTGAAGCTAC
**
63892978 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCT-GGGCT--AC----CACTTAT
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACACTTATCACTTAT
63893028 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTAT
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTA-CACTTATCACTTAT
* *
63893086 CACTTGTCACTTGTCACTGATCAGATAAATGTAGCTAAAG-----C-TATCACTTAT
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACACTTATCACTTAT
** * * *
63893137 CACTTGCCACTTTTCACTGATTAGATAAGTGTAGCTGAAGCTATCACTTATCACTTAT
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTA-CACTTATCACTTAT
*
63893195 CACTGATCA
1 CACTTATCA
63893204 GAAGTACTCA
Statistics
Matches: 149, Mismatches: 12, Indels: 22
0.81 0.07 0.12
Matches are distributed among these distances:
50 36 0.24
51 48 0.32
52 1 0.01
54 2 0.01
57 1 0.01
58 61 0.41
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.33
Consensus pattern (57 bp):
CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACACTTATCACTTAT
Found at i:63904666 original size:24 final size:24
Alignment explanation
Indices: 63904634--63904681 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
63904624 AAATCTCAAA
63904634 TATCCTGCAACAACTATACTTAAG
1 TATCCTGCAACAACTATACTTAAG
63904658 TATCCTGCAACAACTATACTTAAG
1 TATCCTGCAACAACTATACTTAAG
63904682 ATTCATGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (24 bp):
TATCCTGCAACAACTATACTTAAG
Found at i:63906328 original size:166 final size:165
Alignment explanation
Indices: 63906034--63906387 Score: 422
Period size: 166 Copynumber: 2.1 Consensus size: 165
63906024 GGATACTGCA
* * * **
63906034 AACCATACTCACCAACATGAACACACAAAGCAAGCACTTGAAACATAAATCAAGATCGGTATTTA
1 AACCATACTCACCTAGATGAACACACAAAGCAAGCACTTGAAACATAAATCAAGAGCCATATTTA
* * ** * *
63906099 AGCTAGCAATCAAAAACAATAATAAGACTTTACTTACTAGTAATAATAATGTCATCATAGGTAAA
66 AACTAGCAATAAAAAACAATAATAAGACTCCACTTACTAGTAATAACAATGTCACCATAGGTAAA
** * * **
63906164 AGTTTAAGCTTTAATACAAGAATGCGACTACATTT
131 AGCCTAAGCTTTAATACAAGAATGCAACCACATCG
* * *
63906199 AACCATACTCACCTAGATGAGCATACAATGCAAGCA-TATGAAACATAAATCAAGAAGCCATATT
1 AACCATACTCACCTAGATGAACACACAAAGCAAGCACT-TGAAACATAAATCAAG-AGCCATATT
* * ** * *
63906263 TAAACTAGTAATAAAAAATAATAATACTACTCCACTTACTAGTAATAGCAATGTTACCATAGGTA
64 TAAACTAGCAATAAAAAACAATAATAAGACTCCACTTACTAGTAATAACAATGTCACCATAGGTA
* *
63906328 AAAGCCTAAGCTTTAATACTAGTATGCAACCACATCG
129 AAAGCCTAAGCTTTAATACAAGAATGCAACCACATCG
*
63906365 AACCATACTCACCTAGACGAACA
1 AACCATACTCACCTAGATGAACA
63906388 TGCATTTTTT
Statistics
Matches: 157, Mismatches: 30, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
164 1 0.01
165 47 0.30
166 109 0.69
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.24
Consensus pattern (165 bp):
AACCATACTCACCTAGATGAACACACAAAGCAAGCACTTGAAACATAAATCAAGAGCCATATTTA
AACTAGCAATAAAAAACAATAATAAGACTCCACTTACTAGTAATAACAATGTCACCATAGGTAAA
AGCCTAAGCTTTAATACAAGAATGCAACCACATCG
Found at i:63908880 original size:3 final size:3
Alignment explanation
Indices: 63908872--63908905 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
63908862 GATGTGTACG
63908872 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
63908906 TGAATGATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:63910596 original size:25 final size:26
Alignment explanation
Indices: 63910568--63910630 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 26
63910558 TGATTAAAGA
*
63910568 ATTTTAATTGAACTTAA-TAAAATAT
1 ATTTTAATTAAACTTAATTAAAATAT
* *
63910593 A-TTTATTTAAATTTAATTAAAATAT
1 ATTTTAATTAAACTTAATTAAAATAT
*
63910618 ATATTAATATAAA
1 ATTTTAAT-TAAA
63910631 ATAAATTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
24 12 0.40
25 10 0.33
26 4 0.13
27 4 0.13
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (26 bp):
ATTTTAATTAAACTTAATTAAAATAT
Found at i:63910630 original size:27 final size:24
Alignment explanation
Indices: 63910581--63910630 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
63910571 TTAATTGAAC
*
63910581 TTAATAAAATATATTTATTTAAAT
1 TTAATAAAATATATTTATATAAAT
63910605 TTAATTAAAATATATATTAATATAAA
1 TTAA-TAAAATATAT-TT-ATATAAA
63910631 ATAAATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 4 0.18
25 10 0.45
26 2 0.09
27 6 0.27
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
TTAATAAAATATATTTATATAAAT
Found at i:63910637 original size:27 final size:25
Alignment explanation
Indices: 63910585--63910637 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 25
63910575 TTGAACTTAA
* * *
63910585 TAAAATATATTTATTTAAATTTAAT
1 TAAAATATATTTATATAAAATAAAT
63910610 TAAAATATATATTAATATAAAATAAAT
1 TAAAATATAT-TT-ATATAAAATAAAT
63910637 T
1 T
63910638 TTAAAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 10 0.43
26 2 0.09
27 11 0.48
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
TAAAATATATTTATATAAAATAAAT
Found at i:63910641 original size:17 final size:16
Alignment explanation
Indices: 63910600--63910641 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
63910590 TATATTTATT
63910600 TAAA-TTTAATTAAAA
1 TAAATTTTAATTAAAA
* *
63910615 TATATATTAATATAAAA
1 TAAATTTTAAT-TAAAA
63910632 TAAATTTTAA
1 TAAATTTTAA
63910642 AATTTAAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 3 0.14
16 5 0.24
17 13 0.62
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TAAATTTTAATTAAAA
Found at i:63910849 original size:36 final size:36
Alignment explanation
Indices: 63910802--63910874 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
63910792 GTCATGCGCC
*
63910802 ATTATTTAATTATTCCATTAGTCACATTAATTTTTA
1 ATTATTTAATTATTCCATTAGCCACATTAATTTTTA
*
63910838 ATTATTTAATTATTCCATTGGCCACATTAATTTTTA
1 ATTATTTAATTATTCCATTAGCCACATTAATTTTTA
63910874 A
1 A
63910875 CGGTACAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.33, C:0.12, G:0.04, T:0.51
Consensus pattern (36 bp):
ATTATTTAATTATTCCATTAGCCACATTAATTTTTA
Found at i:63913191 original size:19 final size:19
Alignment explanation
Indices: 63913163--63913199 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
63913153 ATACAGCTTG
* *
63913163 TACACGGGTGTGTGGACCC
1 TACACAGGTGTGTAGACCC
63913182 TACACAGGTGTGTAGACC
1 TACACAGGTGTGTAGACC
63913200 TCCACACGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.24, G:0.32, T:0.22
Consensus pattern (19 bp):
TACACAGGTGTGTAGACCC
Found at i:63916248 original size:16 final size:16
Alignment explanation
Indices: 63916229--63916263 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
63916219 ATATGTAGGT
*
63916229 ATATAAAAATTATAAA
1 ATATAAAAATAATAAA
*
63916245 ATATGAAAATAATAAA
1 ATATAAAAATAATAAA
63916261 ATA
1 ATA
63916264 CATATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
ATATAAAAATAATAAA
Found at i:63918183 original size:85 final size:84
Alignment explanation
Indices: 63918043--63918207 Score: 201
Period size: 85 Copynumber: 2.0 Consensus size: 84
63918033 GTGGTTTTAG
*
63918043 TCTGCTCCACTACAACGTCAGGGAGATAAGACTTGTATTTTCAACCTGCTCCACTGCAACTTCAG
1 TCTGCTCCACTACAACGTCAGAGAGATAAGACTTGTATTTTCAACCTGCTCCACTGCAACTTCAG
* *
63918108 GGAGATAAGGTTTGATGCGA
66 GAAGAT-AGGATTGATGCGA
* * * * *
63918128 TCTGCTCTACTGCAACGTTAGAGAGATAAGATCTATG-GTTTT-AATCC-GCTTCACTGCAACTT
1 TCTGCTCCACTACAACGTCAGAGAGATAAGA-CT-TGTATTTTCAA-CCTGCTCCACTGCAACTT
63918190 CAGGAAGATAGGATTGAT
63 CAGGAAGATAGGATTGAT
63918208 TTCTTTCGTC
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
84 8 0.12
85 51 0.74
86 8 0.12
87 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (84 bp):
TCTGCTCCACTACAACGTCAGAGAGATAAGACTTGTATTTTCAACCTGCTCCACTGCAACTTCAG
GAAGATAGGATTGATGCGA
Found at i:63918254 original size:129 final size:129
Alignment explanation
Indices: 63918088--63918328 Score: 333
Period size: 129 Copynumber: 1.9 Consensus size: 129
63918078 TATTTTCAAC
* ** *
63918088 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGATGCGA-TCTGCTCTACTGCAACGTT-AGAG
1 CTGCTCCACTGCAACTTCAAGGAGATAAGACTGGATGC-ATTCTGCTCTACTGCAAC-TTCAGAG
** *
63918151 AGATAAGATCTATGGTTTTAATCCGCTTCACTGCAACTTCAGGAAGATAGGATTGATTTCTTTCG
64 AGATAAGATCTATGACTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTGATTTCTTTCG
63918216 T
129 T
*
63918217 CTGCTCCACTGTAACTTCAAGGAGATAAGACTGGATGCATTCTGCTCTACTGCAACTTCAGAGAG
1 CTGCTCCACTGCAACTTCAAGGAGATAAGACTGGATGCATTCTGCTCTACTGCAACTTCAGAGAG
* * * * *
63918282 ATAAGATCTATTACTTTAATTCGCTCCTCTTCAACTTCAGGGAGATA
66 ATAAGATCTATGACTTTAATCCGCTCCACTGCAACTTCAGGAAGATA
63918329 AAATTTGCCA
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
128 3 0.03
129 94 0.97
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (129 bp):
CTGCTCCACTGCAACTTCAAGGAGATAAGACTGGATGCATTCTGCTCTACTGCAACTTCAGAGAG
ATAAGATCTATGACTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTGATTTCTTTCGT
Found at i:63918308 original size:85 final size:85
Alignment explanation
Indices: 63918219--63918502 Score: 236
Period size: 85 Copynumber: 3.3 Consensus size: 85
63918209 TCTTTCGTCT
* *
63918219 GCTCCACTGTAACTTCAAGGAGATAAGACTGGATGCATTCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCATTCTGCTCTACTGCAACTTCAGAGAGAT
63918284 AAGATCTATTACTTTAATTC
66 AAGATCTATTACTTTAATTC
* * * * * * * * *
63918304 GCTCCTCTTCAACTTCAGGGAGATAAAATTTGCCAT-CTTCGATCTGCCCCACTGCAACTTCAGG
1 GCTCCACTGCAACTTCAGGGAGATAAGA-CTG-GATGCAT---TCTGCTCTACTGCAACTTCAGA
* * * * *
63918368 GGGATAA-AACTTGTTTAC--TCAGTC
61 GAGATAAGATC-T-ATTACTTTAATTC
* * * **
63918392 TGCTCTACTACAACTTCAGGGAGATAAGACTTGATGCGA-TCCACTCTACTGCAACTTCAGAGAG
1 -GCTCCACTGCAACTTCAGGGAGATAAGACTGGATGC-ATTCTGCTCTACTGCAACTTCAGAGAG
63918456 ATAAGATCTATTACTTTAATTC
64 ATAAGATCTATTACTTTAATTC
* * *
63918478 ACTTCTCTGCAACTTCAGGGAGATA
1 GCTCCACTGCAACTTCAGGGAGATA
63918503 TTATCGGCTT
Statistics
Matches: 147, Mismatches: 39, Indels: 26
0.69 0.18 0.12
Matches are distributed among these distances:
84 4 0.03
85 67 0.46
86 10 0.07
87 4 0.03
88 8 0.05
89 50 0.34
90 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (85 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCATTCTGCTCTACTGCAACTTCAGAGAGAT
AAGATCTATTACTTTAATTC
Found at i:63918941 original size:46 final size:46
Alignment explanation
Indices: 63918883--63921476 Score: 3654
Period size: 46 Copynumber: 56.4 Consensus size: 46
63918873 GCTGTCAATG
* * *
63918883 CAGGAAGGCAAGATTTGCTTTCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63918929 CAGGAAGACAAGATCTACTATCTTCGATCCCCTTCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
63918975 CAGG-AGAACAAGATCTGCTATCTTCGATCCCCTCTGCTGCCAAATA
1 CAGGAAG-ACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63919021 CAGGAGGACAAGATCTGCTATCTTCGATCCCCTTCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
63919067 CAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
63919113 CAGGAAGACAAGATCTGCT-TCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
63919158 CAGAAAGATAAGATCTGCTATCTTTGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
63919204 CAGGAAGACAAGATCTACTATTTTCGATCCCATCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * ** ** * *
63919250 CAAGAAGACAAGATCTGCTTTCTTTTATCTACTCTGCTGCCTAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * * **
63919296 CAGGAAGATAAGATTTACTTTTTTTAATCTCCC-CCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATC-CCCTCCGCTGCCAAATA
* * * * *
63919342 TAGGAAGACAAGATCTACTATCTTTGATCTCCTCCACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * *
63919388 CAAGAAGACAAGATCTACTATCTTCGATCCCC-CCACTGCAAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
63919433 CAGGAAGACAAGATCTGCTTTCTTTGGTCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63919479 CAGGAAGACAAGATCTCTGCTATCTTTGATCCCCTCCGCTGCCAACTA
1 CAGGAAGACAAGA--TCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
63919527 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
63919573 CAGGAAGACAAGATCTGCTATCTTCGATCACATTCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * *
63919619 CAGGAAAACAAGATCTGCTATCTTAGATACCCTCCGCTGTCAAATG
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
63919665 CAGGAAGACAAGATCTGCTATCTTCGATCCCTTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
63919711 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
**
63919757 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63919803 CAGGAAGACAAGATCTGCTATATTCGACCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
63919849 TAGGAAGACAAGATCTTCTATCTTCGATCCCCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
63919895 CAGGAAGACAAGATCTGTTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* ** *
63919941 TAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTACTACCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63919987 CAGGAAGACAAGATCTGCTTTCTTCGATCCCCTCCGCTACCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * ** **
63920033 CAAGAAGACAAGATCTGTTATCTTCGATCTACTCTACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63920079 CAGGAAGACAAAATCTGCTATCTTCGATCCCCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * * ** * *
63920125 TAGGAAGACAATATATGCTTTCTTTGATCTACTCCGTTGCCTAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * * *
63920171 CAAGAAGATAAGATCTGCTTTCTTCGATCTCCTCTGTTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * **
63920217 TAGAAAGACAAGATCTGCTATCTTCGATCCCCTCTACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63920263 CAGGAAGACAAGATCTGCTATATTCGATCCCCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
63920309 CAGGAAGACAAGATCTTCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
63920355 CAGGAAGACAAGATCTGCTATATTCGATCCCCTCTGCTACCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * *
63920401 CAAG-AGACAAGATCTACTTTCTTCGATCCTCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
** *
63920446 CAGGAAGACAAGATCTGCTATCTTCGATCTACTCCACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
63920492 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * ** *
63920538 CAGGAAGACAATATCTGC-ATTCTTTGATCTACTCCGCTGCCTAATA
1 CAGGAAGACAAGATCTGCTA-TCTTCGATCCCCTCCGCTGCCAAATA
* * * * *
63920584 CAGGAAGATAAGATCTGCTTTCTTCAATCTCCTCCGTTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * *
63920630 TAGAAAGACAAGATCTGCTATCTTTGATCTCCTCCACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63920676 TAGGAAGACAATATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
63920722 CAGGAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
63920768 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTACCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63920814 CAGGAAAACATGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * *
63920860 TAGGAAGACAATATCTGCTATATTCGAT-CCCTCCGCTGCCAAATG
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63920905 TAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAGATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
63920951 CAGGAAGACAAGATCTGCTATATTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63920997 CAGGAAGACAAGATCTGCTATCTTCGATCCCTTTCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
63921043 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
63921089 TAGGAAGACAAGATCTACTATCTTCGATCCCCTCCACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63921135 CAGGAAGACAAGATCTACTATCTTCGATCCCTTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * *
63921181 CAGGAATACAAGATCTTCTATCTTCAATCCCCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
63921227 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
63921273 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTGCTACCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * *
63921319 CAGGAATACAAGATCTGCTTTCTTTGATCCCCTCCGCTGTCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * ** *
63921365 TAGGAAGACAAGATCTGCTATGTTCGATCTACTCCACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
63921411 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
63921457 CAGGAAGACAAGATCTGCTA
1 CAGGAAGACAAGATCTGCTA
63921477 CTTTTAGTCC
Statistics
Matches: 2263, Mismatches: 273, Indels: 24
0.88 0.11 0.01
Matches are distributed among these distances:
45 167 0.07
46 2051 0.91
47 2 0.00
48 43 0.02
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (46 bp):
CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
Found at i:63922530 original size:96 final size:97
Alignment explanation
Indices: 63922363--63922649 Score: 398
Period size: 96 Copynumber: 3.0 Consensus size: 97
63922353 GAAAAATGCT
* * * *
63922363 TGAAAAAGATTATTACAATGGACAAGATGAAATTTTATTGAGAACAAGGCTCGAGATGAATAAAT
1 TGAAAAAGATTATCACAATGGATAAGAAGAAATTTTATTGAGAACAAGGCTCGAAATGAATAAAT
* *
63922428 TAATCAAGATAGAAAATTTTGCTAAGATATGA
66 TAATCAAGATAGCAAATTTTGCTAAGATAAGA
* * *
63922460 TG-AAAAGATTATCACAATGGATAAGAAGAAATTTTATTAAGAACAAAGCTCAAAATGAATAAAT
1 TGAAAAAGATTATCACAATGGATAAGAAGAAATTTTATTGAGAACAAGGCTCGAAATGAATAAAT
**
63922524 TAATCAAGATAGCAAATTTCACTAAGATAAGA
66 TAATCAAGATAGCAAATTTTGCTAAGATAAGA
* ** * *
63922556 TGAAAAAGATTATCACAATGGATAA-AATGAAAATTTATTGAGGGCACGGCTCGAAGTGAATAAA
1 TGAAAAAGATTATCACAATGGATAAGAA-GAAATTTTATTGAGAACAAGGCTCGAAATGAATAAA
*
63922620 TTAATCAAGATAGCAAATTTTGCTAGGATA
65 TTAATCAAGATAGCAAATTTTGCTAAGATA
63922650 CGAAATGAAT
Statistics
Matches: 166, Mismatches: 22, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
96 87 0.52
97 79 0.48
ACGTcount: A:0.47, C:0.09, G:0.17, T:0.26
Consensus pattern (97 bp):
TGAAAAAGATTATCACAATGGATAAGAAGAAATTTTATTGAGAACAAGGCTCGAAATGAATAAAT
TAATCAAGATAGCAAATTTTGCTAAGATAAGA
Found at i:63922945 original size:8 final size:8
Alignment explanation
Indices: 63922932--63922983 Score: 61
Period size: 8 Copynumber: 6.6 Consensus size: 8
63922922 TGGCCTCTCC
63922932 TTTTTCTT
1 TTTTTCTT
63922940 TTTTTCTT
1 TTTTTCTT
*
63922948 CTTTTCTT
1 TTTTTCTT
*
63922956 CTTTT-TT
1 TTTTTCTT
* *
63922963 CTATTCTT
1 TTTTTCTT
63922971 TTTTTCTT
1 TTTTTCTT
63922979 TTTTT
1 TTTTT
63922984 GTTTGTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
7 6 0.15
8 33 0.85
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTCTT
Found at i:63922992 original size:20 final size:19
Alignment explanation
Indices: 63922932--63922999 Score: 82
Period size: 20 Copynumber: 3.5 Consensus size: 19
63922922 TGGCCTCTCC
*
63922932 TTTTTCTTTTTTTCTTCTT
1 TTTTTCTTTTTTTATTCTT
*
63922951 TTCTTCTTTTTTCTATTCTT
1 TTTTTCTTTTTT-TATTCTT
* *
63922971 TTTTTCTTTTTTTGTTTGTT
1 TTTTTCTTTTTTT-ATTCTT
63922991 TTTTTCTTT
1 TTTTTCTTT
63923000 GAACATTCTT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
19 12 0.29
20 30 0.71
ACGTcount: A:0.01, C:0.13, G:0.03, T:0.82
Consensus pattern (19 bp):
TTTTTCTTTTTTTATTCTT
Found at i:63923387 original size:11 final size:11
Alignment explanation
Indices: 63923373--63923410 Score: 58
Period size: 11 Copynumber: 3.3 Consensus size: 11
63923363 TTTTCCTCTC
63923373 TTTTTGTTTTT
1 TTTTTGTTTTT
63923384 TTTTTGTTTTTAT
1 TTTTTG-TTTT-T
63923397 TTTTTGTTTTT
1 TTTTTGTTTTT
63923408 TTT
1 TTT
63923411 GCTCCCACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.40
12 8 0.32
13 7 0.28
ACGTcount: A:0.03, C:0.00, G:0.08, T:0.89
Consensus pattern (11 bp):
TTTTTGTTTTT
Found at i:63923401 original size:13 final size:12
Alignment explanation
Indices: 63923373--63923410 Score: 60
Period size: 13 Copynumber: 3.2 Consensus size: 12
63923363 TTTTCCTCTC
63923373 TTTTTG-TTTTT
1 TTTTTGTTTTTT
63923384 TTTTTGTTTTTAT
1 TTTTTGTTTTT-T
63923397 TTTTTGTTTTTT
1 TTTTTGTTTTTT
63923409 TT
1 TT
63923411 GCTCCCACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 6 0.24
12 7 0.28
13 12 0.48
ACGTcount: A:0.03, C:0.00, G:0.08, T:0.89
Consensus pattern (12 bp):
TTTTTGTTTTTT
Found at i:63927602 original size:16 final size:16
Alignment explanation
Indices: 63927583--63927617 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
63927573 ATATGTAGGT
*
63927583 ATATAAAAATTATAAA
1 ATATAAAAATAATAAA
*
63927599 ATATGAAAATAATAAA
1 ATATAAAAATAATAAA
63927615 ATA
1 ATA
63927618 CATATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
ATATAAAAATAATAAA
Found at i:63929472 original size:41 final size:41
Alignment explanation
Indices: 63929373--63929831 Score: 162
Period size: 44 Copynumber: 10.7 Consensus size: 41
63929363 CTGGTTTTAG
* * * * * *
63929373 TCTGCTCCACTACAACGTCAGGGAGATAAGACTTGTATTTTCAA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG-A--TGCGA
* * *
63929417 CCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGATGCGA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGATGCGA
*
63929458 TCTGCTCTACTGCAACGTT-AGAGAGATAAGATTTG-TG-GTTTTAA
1 TCTGCTCTACTGCAAC-TTCAGGGAGATAAGATTTGATGCG-----A
* * ** *
63929502 TCCGCT-TCACTGCAACTTCAGGAAGATAGGATTGATTTCTTTCG-
1 TCTGCTCT-ACTGCAACTTCAGGGAGATA--A--GATTTGATGCGA
* * * * *
63929546 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGCAA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGATGCGA
* * ***
63929587 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGAT-T-TGA-TGCGA
* * * *
63929631 T-TCGCTCCT-CTTCAACTTCAGGGAGATAAAATTTTCCATCTTCGA
1 TCT-GCT-CTACTGCAACTTCAGGGAGATAAGA-TTT-GA--TGCGA
* * * ** * * *
63929676 TCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTCA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG-ATGC-GA
* * *
63929719 GTCTGCTCCACTACAACTTCA-GGAGATAAGACTTGATGCGA
1 -TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGATGCGA
** * * ***
63929760 TCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGAT-T-TGA-TGCGA
63929804 TCTGCTTCT-CTGCAACTTCAGGGAGATA
1 TCTGC-TCTACTGCAACTTCAGGGAGATA
63929832 GAATTATCGG
Statistics
Matches: 310, Mismatches: 71, Indels: 68
0.69 0.16 0.15
Matches are distributed among these distances:
39 1 0.00
40 23 0.07
41 69 0.22
42 9 0.03
43 22 0.07
44 145 0.47
45 32 0.10
46 2 0.01
48 5 0.02
49 1 0.00
50 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (41 bp):
TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGATGCGA
Found at i:63929513 original size:85 final size:84
Alignment explanation
Indices: 63929373--63929537 Score: 208
Period size: 85 Copynumber: 2.0 Consensus size: 84
63929363 CTGGTTTTAG
*
63929373 TCTGCTCCACTACAACGTCAGGGAGATAAGACTTGTATTTTCAACCTGCTCCACTGCAACTTCAG
1 TCTGCTCCACTACAACGTCAGAGAGATAAGACTTGTATTTTCAACCTGCTCCACTGCAACTTCAG
* *
63929438 GGAGATAAGGTTTGATGCGA
66 GAAGAT-AGGATTGATGCGA
* * * * * *
63929458 TCTGCTCTACTGCAACGTTAGAGAGATAAGATTTGTGGTTTT-AATCC-GCTTCACTGCAACTTC
1 TCTGCTCCACTACAACGTCAGAGAGATAAGACTTGT-ATTTTCAA-CCTGCTCCACTGCAACTTC
63929521 AGGAAGATAGGATTGAT
64 AGGAAGATAGGATTGAT
63929538 TTCTTTCGTC
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
84 8 0.12
85 55 0.80
86 6 0.09
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (84 bp):
TCTGCTCCACTACAACGTCAGAGAGATAAGACTTGTATTTTCAACCTGCTCCACTGCAACTTCAG
GAAGATAGGATTGATGCGA
Found at i:63929630 original size:129 final size:130
Alignment explanation
Indices: 63929418--63929707 Score: 345
Period size: 129 Copynumber: 2.2 Consensus size: 130
63929408 TATTTTCAAC
** * *
63929418 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGATGCGATCTGCTCTACTGCAACGTTAGAGAG
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACGTTAGAGAG
* * ** * ** *
63929483 ATAAGATTTGTGGTTTTAATCCGCTTCACTGCAACTTCAGGAAGATAGGATTGATTTC-T-TTCG
66 ATAAGATCTATGACTTTAATCCGCTCCACTGCAACTTCAGGAAGATAAAATT--TTCCATCTTCG
63929546 -T
129 AT
*
63929547 CTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAAC-TTCAGAGA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACGTT-AGAGA
* * * * *
63929611 GATAAGATCTATTACTTTAATTCGCTCCTCTTCAACTTCAGGGAGATAAAATTTTCCATCTTCGA
65 GATAAGATCTATGACTTTAATCCGCTCCACTGCAACTTCAGGAAGATAAAATTTTCCATCTTCGA
63929676 T
130 T
* *
63929677 CTGCCCCACTGCAACTTCAGGGGGATAAGAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGAC
63929708 CTGCTTACTC
Statistics
Matches: 136, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
127 3 0.02
128 3 0.02
129 101 0.74
130 29 0.21
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (130 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACGTTAGAGAG
ATAAGATCTATGACTTTAATCCGCTCCACTGCAACTTCAGGAAGATAAAATTTTCCATCTTCGAT
Found at i:63929659 original size:173 final size:173
Alignment explanation
Indices: 63929500--63929836 Score: 446
Period size: 173 Copynumber: 1.9 Consensus size: 173
63929490 TTGTGGTTTT
** * * * **
63929500 AATCCGCTTCACTGCAACTTCAGGAAGATAGGA-TTGATTTCTTTC-GTCTGCTCCACTGTAACT
1 AATCCGCCCCACTGCAACTTCAGGAAGATAAGACCTGATTAC--TCAGTCTGCTCCACTACAACT
**
63929563 TCAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
64 TCA-GGAGATAAGACTGGATGCAATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
*
63929628 TAAT-TCGCTCCTCTTCAACTTCAGGGAGATAAAATTTTCCATCTTC
128 TAATCT-GCTCCTCTGCAACTTCAGGGAGATAAAATTTTCCATCTTC
* * ** *
63929674 GATCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTCAGTCTGCTCCACTACAACTTC
1 AATCCGCCCCACTGCAACTTCAGGAAGATAAGACCTGATTACTCAGTCTGCTCCACTACAACTTC
* *
63929739 AGGAGATAAGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
66 AGGAGATAAGACTGGATGCAATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
* *
63929804 TCTGCTTCTCTGCAACTTCAGGGAGATAGAATT
131 TCTGCTCCTCTGCAACTTCAGGGAGATAAAATT
63929837 ATCGGCTTCA
Statistics
Matches: 141, Mismatches: 19, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
173 90 0.64
174 46 0.33
175 5 0.04
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (173 bp):
AATCCGCCCCACTGCAACTTCAGGAAGATAAGACCTGATTACTCAGTCTGCTCCACTACAACTTC
AGGAGATAAGACTGGATGCAATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
TCTGCTCCTCTGCAACTTCAGGGAGATAAAATTTTCCATCTTC
Found at i:63929899 original size:173 final size:174
Alignment explanation
Indices: 63929546--63929903 Score: 422
Period size: 173 Copynumber: 2.1 Consensus size: 174
63929536 ATTTCTTTCG
** **
63929546 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCAATCCACTCTACTGCAACTTCAGAGA
* * * *
63929611 GATAAGATCTATTACTTTAATTCGCTCCTCTTCAACTTCAGGGAGATAAAATTTTCCATCTTCGA
66 GATAAGATCTATTACTTTAATTCGCTCCTCTGCAACTTCAGGGAGATAAAATTATCCAGCTTCAA
* * * * *
63929676 TCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTCAG
131 TCTACCCCACTGCAACTACAGGGGGATAAAACCTGCATACTCAA
* *
63929720 TCTGCTCCACTACAACTTCA-GGAGATAAGACTTGATGCGATCCACTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCAATCCACTCTACTGCAACTTCAGAGA
* * *
63929784 GATAAGATCTATTACTTTAA-TCTGCTTCTCTGCAACTTCAGGGAGATAGAATTAT-CGGCTTCA
66 GATAAGATCTATTACTTTAATTC-GCTCCTCTGCAACTTCAGGGAGATAAAATTATCCAGCTTCA
* * * * *
63929847 ATGTACTCTACTGTAA-TCACAGGGAGG-TAAAATCTGCCAT-CTTCAA
130 ATCTACCCCACTGCAACT-ACAGGG-GGATAAAACCTG-CATAC-TCAA
63929893 TCTGCTCCACT
1 TCTGCTCCACT
63929904 TTTGGGAGAT
Statistics
Matches: 156, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
171 1 0.01
172 31 0.20
173 106 0.68
174 18 0.12
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (174 bp):
TCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCAATCCACTCTACTGCAACTTCAGAGA
GATAAGATCTATTACTTTAATTCGCTCCTCTGCAACTTCAGGGAGATAAAATTATCCAGCTTCAA
TCTACCCCACTGCAACTACAGGGGGATAAAACCTGCATACTCAA
Found at i:63940578 original size:28 final size:29
Alignment explanation
Indices: 63940538--63940594 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
63940528 TGTGTCTTAT
*
63940538 CCAATGATAAACAAGCCA-TTGGAAACAA
1 CCAATGATAAACAAACCAGTTGGAAACAA
* *
63940566 CCAATGGTAAACAAACTAGTTGGAAACAA
1 CCAATGATAAACAAACCAGTTGGAAACAA
63940595 TTTTTCAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.49, C:0.19, G:0.16, T:0.16
Consensus pattern (29 bp):
CCAATGATAAACAAACCAGTTGGAAACAA
Found at i:63946698 original size:24 final size:25
Alignment explanation
Indices: 63946649--63946702 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
63946639 AATTTTAATA
** *
63946649 ATGTAATTATTTTTTATTTTTTTAT
1 ATGTAATTATTTTTTATTAATCTAT
63946674 ATGTAATTATTTTTTA-TAATCTAT
1 ATGTAATTATTTTTTATTAATCTAT
63946698 ATGTA
1 ATGTA
63946703 TATATTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.63
Consensus pattern (25 bp):
ATGTAATTATTTTTTATTAATCTAT
Found at i:63950253 original size:108 final size:105
Alignment explanation
Indices: 63950054--63950259 Score: 313
Period size: 108 Copynumber: 1.9 Consensus size: 105
63950044 AAAATTCAAG
*
63950054 AGGATATTTGGCTATTTGGTTAAACGAGAAATCCAAACCCAACACATTAGGGCATGTTCCTCGAA
1 AGGATATTTGGCTATTTGGTTAAACGAGAAATCCAAACCCAACACATTAGGGCACGTTCCTCGAA
* *
63950119 TTTCCGAACGCGAAACATTGCCTTATTTTGAAATTTTGAA
66 TTTCCAAACGCGAAACATTGCCTTATTTAGAAATTTTGAA
* * *
63950159 AGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTCCTC
1 AGGATATTTGGCTATTTGGTTAAACGAG--AAATCCAAACCCAACACATTAGGGCACG-TTCCTC
* *
63950224 GAATTTCCAAACGCTAAATATTGCCTTATTTAGAAA
63 GAATTTCCAAACGCGAAACATTGCCTTATTTAGAAA
63950260 AATCCTCATC
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
105 27 0.30
107 25 0.28
108 38 0.42
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (105 bp):
AGGATATTTGGCTATTTGGTTAAACGAGAAATCCAAACCCAACACATTAGGGCACGTTCCTCGAA
TTTCCAAACGCGAAACATTGCCTTATTTAGAAATTTTGAA
Found at i:63950929 original size:30 final size:31
Alignment explanation
Indices: 63950887--63950944 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
63950877 TATATGTATA
* *
63950887 TATATGAAAAAATATGTATGTACATATAAAG
1 TATATGAAAAAATAAGTAAGTACATATAAAG
*
63950918 TATAT-AAAAAATAAGTAAGTATATATA
1 TATATGAAAAAATAAGTAAGTACATATA
63950945 TATCAAAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.55, C:0.02, G:0.10, T:0.33
Consensus pattern (31 bp):
TATATGAAAAAATAAGTAAGTACATATAAAG
Found at i:63952423 original size:3 final size:3
Alignment explanation
Indices: 63952415--63952448 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
63952405 TGGGTCTTAC
63952415 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
63952449 TGAATGATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:63955237 original size:17 final size:18
Alignment explanation
Indices: 63955210--63955256 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
63955200 ATAAGTAAAT
*
63955210 AAACATGAAAAGAA-AAA
1 AAACATAAAAAGAAGAAA
*
63955227 AAACATAAAAATAAGAAA
1 AAACATAAAAAGAAGAAA
*
63955245 AATAAATAAAAA
1 AA-ACATAAAAA
63955257 TATATGTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 12 0.48
18 5 0.20
19 8 0.32
ACGTcount: A:0.79, C:0.04, G:0.06, T:0.11
Consensus pattern (18 bp):
AAACATAAAAAGAAGAAA
Found at i:63955253 original size:19 final size:20
Alignment explanation
Indices: 63955219--63955258 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
63955209 TAAACATGAA
63955219 AAGAAAAAAAACATAAAAAT
1 AAGAAAAAAAACATAAAAAT
*
63955239 AAGAAAAATAA-ATAAAAAT
1 AAGAAAAAAAACATAAAAAT
63955258 A
1 A
63955259 TATGTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.80, C:0.03, G:0.05, T:0.12
Consensus pattern (20 bp):
AAGAAAAAAAACATAAAAAT
Found at i:63955283 original size:3 final size:3
Alignment explanation
Indices: 63955277--63955395 Score: 87
Period size: 3 Copynumber: 40.0 Consensus size: 3
63955267 TAATAATGGC
* * * * * * *
63955277 AAT AAT AAT ATT AAT AGT ATT AAT AAT AAG AAA AAA AAT AA- AAT AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * ** * **
63955324 AAA AAT AGT AAT AAC ATT AAT AAT AAT TCT AAT AAC AAT GTT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
63955372 AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT
63955396 GAAAGTAACA
Statistics
Matches: 88, Mismatches: 27, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
2 2 0.02
3 86 0.98
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:63957358 original size:29 final size:29
Alignment explanation
Indices: 63957316--63957403 Score: 113
Period size: 29 Copynumber: 3.0 Consensus size: 29
63957306 GTGTGGTTTC
* * *
63957316 GTGGCCAAACGGGCATGTGCTGCACACGG
1 GTGGCCAAACGGGCGTGTGCCGCACACAG
* *
63957345 GTGGCCACACGGGCGTGTGCCACACACAG
1 GTGGCCAAACGGGCGTGTGCCGCACACAG
* *
63957374 GTGGCCAGACGAGCGTGTGCCGCACACAG
1 GTGGCCAAACGGGCGTGTGCCGCACACAG
63957403 G
1 G
63957404 CGGTTCACAC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.20, C:0.31, G:0.38, T:0.11
Consensus pattern (29 bp):
GTGGCCAAACGGGCGTGTGCCGCACACAG
Found at i:63965607 original size:166 final size:165
Alignment explanation
Indices: 63965315--63965668 Score: 417
Period size: 166 Copynumber: 2.1 Consensus size: 165
63965305 GGATACTGCA
* * * *
63965315 AACCATACTCACCAACATGAACACACAAAGCAAGCACTTGAAACATAAATCAAGATCAGTATTTA
1 AACCATACTCACCTAGATGAACACACAAAGCAAGCACTAGAAACATAAATCAAGACCAGTATTTA
* * ** * *
63965380 AGCTAGCAAGCAAAAATAATAATAAGACTTTACTTACTAGTAATAATAATGTCATCATAGGTAAA
66 AACTAGCAAGAAAAAATAATAATAAGACTCCACTTACCAGTAATAATAATGTCACCATAGGTAAA
* * * **
63965445 AGCTTAAGCTTTAATACAAGTATGCGACTACATTT
131 AGCCTAAGCTTTAATACAAGTATGCAACCACATCG
* * * *
63965480 AACCATACTCACCTAGATGAGCATACAATGCAAGCA-TAAGAAGCATAAATCAAGACGCCA-TAT
1 AACCATACTCACCTAGATGAACACACAAAGCAAGCACT-AGAAACATAAATCAAGA--CCAGTAT
* * ** *
63965543 TTAAACTAGTAATAAAAAATAATAATACTACTCCACTTACCAGTAAT-ATCAATGTTACCATAGG
63 TTAAACTAGCAAGAAAAAATAATAATAAGACTCCACTTACCAGTAATAAT-AATGTCACCATAGG
*
63965607 TAAAAGCCTAAGCTTTAATACTAGTATGCAACCACATCG
127 TAAAAGCCTAAGCTTTAATACAAGTATGCAACCACATCG
*
63965646 AACCATACTCACCTAGACGAACA
1 AACCATACTCACCTAGATGAACA
63965669 TGCATTTTTT
Statistics
Matches: 158, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
164 1 0.01
165 48 0.30
166 107 0.68
167 2 0.01
ACGTcount: A:0.44, C:0.21, G:0.11, T:0.24
Consensus pattern (165 bp):
AACCATACTCACCTAGATGAACACACAAAGCAAGCACTAGAAACATAAATCAAGACCAGTATTTA
AACTAGCAAGAAAAAATAATAATAAGACTCCACTTACCAGTAATAATAATGTCACCATAGGTAAA
AGCCTAAGCTTTAATACAAGTATGCAACCACATCG
Found at i:63971173 original size:21 final size:21
Alignment explanation
Indices: 63971156--63971207 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
63971146 GCATGTACCT
63971156 CCTCTACACGGGTGTGTACAG
1 CCTCTACACGGGTGTGTACAG
* * *
63971177 CTTGTACACGGGTGTGTA-AA
1 CCTCTACACGGGTGTGTACAG
*
63971197 CCCCTACACGG
1 CCTCTACACGG
63971208 ACTTGTAGAC
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (21 bp):
CCTCTACACGGGTGTGTACAG
Found at i:63971890 original size:38 final size:37
Alignment explanation
Indices: 63971814--63971892 Score: 88
Period size: 38 Copynumber: 2.1 Consensus size: 37
63971804 GGTATGTAGA
* * * **
63971814 GTGGATGAGCTTATCATGGTCCTATGTGGTGTGTAGG
1 GTGGATGAGCTTATCATGCTCATACGTGGTGTACAGG
63971851 GTGGATGAGCTTGAT-ATAGCTCATACGTGGTGTACAGG
1 GTGGATGAGCTT-ATCAT-GCTCATACGTGGTGTACAGG
63971889 GTGG
1 GTGG
63971893 TTAAAGTGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
37 14 0.40
38 21 0.60
ACGTcount: A:0.19, C:0.11, G:0.38, T:0.32
Consensus pattern (37 bp):
GTGGATGAGCTTATCATGCTCATACGTGGTGTACAGG
Found at i:63976900 original size:22 final size:22
Alignment explanation
Indices: 63976856--63976909 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
63976846 TATAAAAATT
*
63976856 TAAATTACTTTTATCATTCTAA
1 TAAATTAATTTTATCATTCTAA
* *
63976878 TTAATTAATTTTAATGATT-TAA
1 TAAATTAATTTT-ATCATTCTAA
63976900 TAATATTAAT
1 TAA-ATTAAT
63976910 AATATCTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.52
Consensus pattern (22 bp):
TAAATTAATTTTATCATTCTAA
Found at i:63979078 original size:12 final size:12
Alignment explanation
Indices: 63979046--63979079 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
63979036 TGACGACGAG
*
63979046 GAAGATGACGAT
1 GAAGATGATGAT
*
63979058 GACGATGATGAT
1 GAAGATGATGAT
63979070 GAAGATGATG
1 GAAGATGATG
63979080 CCGAAGGTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.06, G:0.35, T:0.21
Consensus pattern (12 bp):
GAAGATGATGAT
Found at i:63986261 original size:6 final size:6
Alignment explanation
Indices: 63986245--63986283 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
63986235 AATTAATCGA
* * *
63986245 AGGGTT AGGGCT GGGGCT AGGGCT AGGGCT AGGGTT AGG
1 AGGGCT AGGGCT AGGGCT AGGGCT AGGGCT AGGGCT AGG
63986284 ATTGGGGCGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.15, C:0.10, G:0.54, T:0.21
Consensus pattern (6 bp):
AGGGCT
Found at i:63994929 original size:41 final size:40
Alignment explanation
Indices: 63994879--63994975 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 40
63994869 ATATATGAAT
* *
63994879 TTGAGCTATTGATTTTTACTAATAAATTTACATATAAATTGA
1 TTGAACTATTGATTTTTACTAA-AAACTTACATATAAATT-A
* **
63994921 -TGAACTATTGATTTTTGCTAAATGCTTACATATAAATTA
1 TTGAACTATTGATTTTTACTAAAAACTTACATATAAATTA
* *
63994960 TTGAATTGTTGATTTT
1 TTGAACTATTGATTTT
63994976 ATGTATAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.02
40 27 0.57
41 19 0.40
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.47
Consensus pattern (40 bp):
TTGAACTATTGATTTTTACTAAAAACTTACATATAAATTA
Found at i:63995210 original size:30 final size:30
Alignment explanation
Indices: 63995175--63995235 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
63995165 GCATTAAGCT
63995175 TTTGAATTATCAATTAATTACGATAAACTA
1 TTTGAATTATCAATTAATTACGATAAACTA
63995205 TTTGAATTATCAATTAATTACGATAAACTA
1 TTTGAATTATCAATTAATTACGATAAACTA
63995235 T
1 T
63995236 CTCCTCAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.41
Consensus pattern (30 bp):
TTTGAATTATCAATTAATTACGATAAACTA
Found at i:63998755 original size:8 final size:8
Alignment explanation
Indices: 63998741--63998799 Score: 61
Period size: 8 Copynumber: 7.5 Consensus size: 8
63998731 GGAAGAACAT
63998741 GAAAAAAA
1 GAAAAAAA
*
63998749 -TAAAAAA
1 GAAAAAAA
63998756 GAAAAAAGA
1 GAAAAAA-A
63998765 GAAAAAAA
1 GAAAAAAA
63998773 G-AAAAAA
1 GAAAAAAA
63998780 GAAAATAAA
1 GAAAA-AAA
*
63998789 -AAAAAAT
1 GAAAAAAA
63998796 GAAA
1 GAAA
63998800 CTAGAGATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
7 15 0.35
8 17 0.40
9 11 0.26
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.05
Consensus pattern (8 bp):
GAAAAAAA
Found at i:63998770 original size:17 final size:16
Alignment explanation
Indices: 63998741--63998799 Score: 68
Period size: 17 Copynumber: 3.7 Consensus size: 16
63998731 GGAAGAACAT
*
63998741 GAAAAAA-ATAAAAAA
1 GAAAAAAGAAAAAAAA
63998756 GAAAAAAGAGAAAAAAA
1 GAAAAAAGA-AAAAAAA
63998773 GAAAAAAGAAAATAAAA
1 GAAAAAAGAAAA-AAAA
*
63998790 -AAAAATGAAA
1 GAAAAAAGAAA
63998800 CTAGAGATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
15 7 0.18
16 13 0.33
17 19 0.49
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.05
Consensus pattern (16 bp):
GAAAAAAGAAAAAAAA
Found at i:64002475 original size:50 final size:50
Alignment explanation
Indices: 64002394--64002488 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
64002384 TGGTCTGACT
*
64002394 ATTCATGCCAACCAAACATTCTCTAACAACATTAGATAAGAGAACTTACC
1 ATTCATGCCAACCAAACATGCTCTAACAACATTAGATAAGAGAACTTACC
64002444 ATTCATGCCAACCAAACATGCTCT-ACGAACATTAGATAAGAGAAC
1 ATTCATGCCAACCAAACATGCTCTAAC-AACATTAGATAAGAGAAC
64002489 CAAGTTGCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
49 2 0.05
50 41 0.95
ACGTcount: A:0.42, C:0.25, G:0.11, T:0.22
Consensus pattern (50 bp):
ATTCATGCCAACCAAACATGCTCTAACAACATTAGATAAGAGAACTTACC
Found at i:64003438 original size:79 final size:79
Alignment explanation
Indices: 64003307--64003468 Score: 324
Period size: 79 Copynumber: 2.1 Consensus size: 79
64003297 AGAAGCTAGA
64003307 TTCATAAGCCAATAAAAGTTCATATTTCAGAGATTAGACGTGAAAAGGATGGCATTCATTGAGTT
1 TTCATAAGCCAATAAAAGTTCATATTTCAGAGATTAGACGTGAAAAGGATGGCATTCATTGAGTT
64003372 TGAAACTTAAAAGT
66 TGAAACTTAAAAGT
64003386 TTCATAAGCCAATAAAAGTTCATATTTCAGAGATTAGACGTGAAAAGGATGGCATTCATTGAGTT
1 TTCATAAGCCAATAAAAGTTCATATTTCAGAGATTAGACGTGAAAAGGATGGCATTCATTGAGTT
64003451 TGAAACTTAAAAGT
66 TGAAACTTAAAAGT
64003465 TTCA
1 TTCA
64003469 AACATCTAAA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 83 1.00
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.31
Consensus pattern (79 bp):
TTCATAAGCCAATAAAAGTTCATATTTCAGAGATTAGACGTGAAAAGGATGGCATTCATTGAGTT
TGAAACTTAAAAGT
Found at i:64007657 original size:18 final size:19
Alignment explanation
Indices: 64007623--64007666 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
64007613 CTTTTTATAG
*
64007623 AAAGA-AAAGGGAGAAATA
1 AAAGAGAAAGGGAAAAATA
*
64007641 AAAGAGAAA-GGAAAAATT
1 AAAGAGAAAGGGAAAAATA
64007659 AAAGAGAA
1 AAAGAGAA
64007667 TAGAGGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (19 bp):
AAAGAGAAAGGGAAAAATA
Found at i:64009673 original size:22 final size:22
Alignment explanation
Indices: 64009647--64009694 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
64009637 TAATGATAGA
64009647 AAATTTACAAGGAATAGATCAC
1 AAATTTACAAGGAATAGATCAC
64009669 AAATTTACAAGGAATAGATCAC
1 AAATTTACAAGGAATAGATCAC
64009691 AAAT
1 AAAT
64009695 CACAAATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.23
Consensus pattern (22 bp):
AAATTTACAAGGAATAGATCAC
Found at i:64016066 original size:50 final size:50
Alignment explanation
Indices: 64015985--64016079 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
64015975 TGGTCTGACT
*
64015985 ATTCATGCCAACCAAACATTCTCTAACAACATTAGATAAGAGAACTTACC
1 ATTCATGCCAACCAAACATGCTCTAACAACATTAGATAAGAGAACTTACC
64016035 ATTCATGCCAACCAAACATGCTCT-ACGAACATTAGATAAGAGAAC
1 ATTCATGCCAACCAAACATGCTCTAAC-AACATTAGATAAGAGAAC
64016080 CAGTTGCAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
49 2 0.05
50 41 0.95
ACGTcount: A:0.42, C:0.25, G:0.11, T:0.22
Consensus pattern (50 bp):
ATTCATGCCAACCAAACATGCTCTAACAACATTAGATAAGAGAACTTACC
Found at i:64017008 original size:76 final size:77
Alignment explanation
Indices: 64016876--64017035 Score: 288
Period size: 76 Copynumber: 2.1 Consensus size: 77
64016866 AGAAGCTAGA
64016876 TTCATAAGCCAATAAAAGTTCATATTTCAGAGATTAGACGTGAAAGGATGGCATTCATTGAGTTT
1 TTCA-AAGCCAATAAAAGTTCATATTTCAGAGATTAGACGTGAAAGGATGGCATTCATTGAGTTT
64016941 GAAACTTAAAAGT
65 GAAACTTAAAAGT
64016954 TTCAAAGCCAATAAAAGTTCATA-TTCAGA-ATTAGACGTGAAAAGGATGGCATTCATTGAGTTT
1 TTCAAAGCCAATAAAAGTTCATATTTCAGAGATTAGACGTG-AAAGGATGGCATTCATTGAGTTT
64017017 GAAACTTAAAAGT
65 GAAACTTAAAAGT
64017030 TTCAAA
1 TTCAAA
64017036 CATCTAAAGT
Statistics
Matches: 81, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
75 10 0.12
76 48 0.59
77 19 0.23
78 4 0.05
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.30
Consensus pattern (77 bp):
TTCAAAGCCAATAAAAGTTCATATTTCAGAGATTAGACGTGAAAGGATGGCATTCATTGAGTTTG
AAACTTAAAAGT
Found at i:64021221 original size:18 final size:19
Alignment explanation
Indices: 64021187--64021230 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
64021177 CTTTTTATAG
*
64021187 AAAGA-AAAGGGAGAAATA
1 AAAGAGAAAGGGAAAAATA
*
64021205 AAAGAGAAA-GGAAAAATT
1 AAAGAGAAAGGGAAAAATA
64021223 AAAGAGAA
1 AAAGAGAA
64021231 TAGAGGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (19 bp):
AAAGAGAAAGGGAAAAATA
Found at i:64023238 original size:22 final size:22
Alignment explanation
Indices: 64023212--64023259 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
64023202 TAATGATAGA
64023212 AAATTTACAAGGAATAGATCAC
1 AAATTTACAAGGAATAGATCAC
64023234 AAATTTACAAGGAATAGATCAC
1 AAATTTACAAGGAATAGATCAC
64023256 AAAT
1 AAAT
64023260 CACAAATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.23
Consensus pattern (22 bp):
AAATTTACAAGGAATAGATCAC
Found at i:64029748 original size:50 final size:50
Alignment explanation
Indices: 64029667--64029761 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
64029657 TGGTCTGACT
*
64029667 ATTCATGCCAACCAAACATTCTCTAACAACATTAGATAAGAGAACTTACC
1 ATTCATGCCAACCAAACATGCTCTAACAACATTAGATAAGAGAACTTACC
64029717 ATTCATGCCAACCAAACATGCTCT-ACAAACATTAGATAAGAGAAC
1 ATTCATGCCAACCAAACATGCTCTAAC-AACATTAGATAAGAGAAC
64029762 CAAGTTGCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
49 2 0.05
50 41 0.95
ACGTcount: A:0.43, C:0.25, G:0.09, T:0.22
Consensus pattern (50 bp):
ATTCATGCCAACCAAACATGCTCTAACAACATTAGATAAGAGAACTTACC
Found at i:64033991 original size:6 final size:6
Alignment explanation
Indices: 64033980--64034011 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
64033970 AGAATATTTT
64033980 ATTAAA ATTAAA ATTAAA ATTAAA ATTTAAA A
1 ATTAAA ATTAAA ATTAAA ATTAAA A-TTAAA A
64034012 ATTATATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
ATTAAA
Found at i:64043414 original size:25 final size:25
Alignment explanation
Indices: 64043364--64043415 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
64043354 CTAATTTCTC
*
64043364 CTTTCTTTCTTCCCCTTTTTCTTTT
1 CTTTCTTTCTTCCCCTTTTTCGTTT
64043389 CTTTCTTT-TTCTCCCTGTTTT-GTTT
1 CTTTCTTTCTTC-CCCT-TTTTCGTTT
64043414 CT
1 CT
64043416 ATTATGTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 17 0.71
26 4 0.17
ACGTcount: A:0.00, C:0.29, G:0.04, T:0.67
Consensus pattern (25 bp):
CTTTCTTTCTTCCCCTTTTTCGTTT
Found at i:64046025 original size:21 final size:21
Alignment explanation
Indices: 64045999--64046042 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
64045989 GTTACCATAT
*
64045999 TGATGTGTTGTATTGCGACAC
1 TGATGTGTTGTATTGCAACAC
*
64046020 TGATGTGTTGTGTTGCAACAC
1 TGATGTGTTGTATTGCAACAC
64046041 TG
1 TG
64046043 GTGCTTCCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.18, C:0.14, G:0.30, T:0.39
Consensus pattern (21 bp):
TGATGTGTTGTATTGCAACAC
Found at i:64046555 original size:16 final size:17
Alignment explanation
Indices: 64046520--64046556 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
64046510 TTAGTTTAGG
*
64046520 CTTTCAATTTTTCCTTT
1 CTTTCAATTTTTCCTCT
64046537 CTTTCAATTTTT-CTCT
1 CTTTCAATTTTTCCTCT
64046553 CTTT
1 CTTT
64046557 TATTTTAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.11, C:0.24, G:0.00, T:0.65
Consensus pattern (17 bp):
CTTTCAATTTTTCCTCT
Found at i:64048949 original size:3 final size:3
Alignment explanation
Indices: 64048907--64048979 Score: 69
Period size: 3 Copynumber: 24.0 Consensus size: 3
64048897 TTTAGCAATT
* * *
64048907 TTA TTA TT- TTA TTCA TTA TT- TTA ATG TTA TTA TCA TTTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
*
64048952 TTA TTA TTA TTA TTA TCAA TTA TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA
64048980 GTTTTATTTC
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
2 4 0.07
3 46 0.81
4 7 0.12
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:64052891 original size:16 final size:17
Alignment explanation
Indices: 64052866--64052898 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
64052856 ATAATTTCAC
*
64052866 TTTTATAAA-TTTAAAA
1 TTTTAAAAATTTTAAAA
64052882 TTTTAAAAATTTTAAAA
1 TTTTAAAAATTTTAAAA
64052899 GGTCTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTAAAAATTTTAAAA
Found at i:64055855 original size:17 final size:16
Alignment explanation
Indices: 64055819--64055857 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
64055809 CTCAAAGTAA
*
64055819 GAAAAAAACCAATTGG
1 GAAAAAAACCAATTAG
*
64055835 GAAAACAAACCAATTAT
1 GAAAA-AAACCAATTAG
64055852 GAAAAA
1 GAAAAA
64055858 TGTAGAAGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.62, C:0.13, G:0.13, T:0.13
Consensus pattern (16 bp):
GAAAAAAACCAATTAG
Found at i:64057308 original size:25 final size:24
Alignment explanation
Indices: 64057264--64057318 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
64057254 CACACCTTTT
*
64057264 TATATAACGCATATACTTATATTA
1 TATATAACGCATATACTTATAATA
* *
64057288 TATATATACGCAT-TATTTTATAATC
1 TATATA-ACGCATATA-CTTATAATA
64057313 TATATA
1 TATATA
64057319 CCTATATGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (24 bp):
TATATAACGCATATACTTATAATA
Found at i:64081216 original size:194 final size:194
Alignment explanation
Indices: 64080887--64081244 Score: 545
Period size: 194 Copynumber: 1.8 Consensus size: 194
64080877 ATTGAGAGCC
* * *
64080887 AAAAACTAGGCTCACAATCCAGCAAAGTTAGTATTATAGGGCTATTAGCAATGGATAATAACTTA
1 AAAAACTAGGCTCACAATCCAGCAAAGTCAGTATTATAGGGCTATTAACAATGGATAACAACTTA
* * * *
64080952 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTTGAC
66 TACTTGCAAATGATCAATCAACACATGTTGATTGATCGCTAATTGAGAGCCAAGATAAAGTCGAC
* * *
64081017 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGCATACAATCATTAGTTTGATGAAGAGAT
131 TTTGCTAAATAATGAGCCTAATTTTCCTTTCATTGGCATACAATCATTAGTTTGATGAAGAGAT
* * *
64081081 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAACAATGGATAGCAACTTG
1 AAAAACTAGGCTCACAATCCAGCAAAGTCAGTATTATAGGGCTATTAACAATGGATAACAACTTA
* * **
64081146 TATTTGCAAATGATCAATTAACACATGTTGATTGATCGCTAATTGAGAGCCAATTTAAAGTCGAC
66 TACTTGCAAATGATCAATCAACACATGTTGATTGATCGCTAATTGAGAGCCAAGATAAAGTCGAC
* *
64081211 TTTGCTAAATAATGAGTCTAATTTTTCTTTCATT
131 TTTGCTAAATAATGAGCCTAATTTTCCTTTCATT
64081245 TGCAAGCAAC
Statistics
Matches: 145, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
194 145 1.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.33
Consensus pattern (194 bp):
AAAAACTAGGCTCACAATCCAGCAAAGTCAGTATTATAGGGCTATTAACAATGGATAACAACTTA
TACTTGCAAATGATCAATCAACACATGTTGATTGATCGCTAATTGAGAGCCAAGATAAAGTCGAC
TTTGCTAAATAATGAGCCTAATTTTCCTTTCATTGGCATACAATCATTAGTTTGATGAAGAGAT
Found at i:64089600 original size:12 final size:12
Alignment explanation
Indices: 64089583--64089607 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64089573 CTTGAAATGC
64089583 CTTCTCTTCACT
1 CTTCTCTTCACT
64089595 CTTCTCTTCACT
1 CTTCTCTTCACT
64089607 C
1 C
64089608 CTTTCTGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.44, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTCTCTTCACT
Found at i:64098459 original size:26 final size:26
Alignment explanation
Indices: 64098397--64098446 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
64098387 CATGTATGTG
*
64098397 AAAATATGTATGAATTATAAAATGGA
1 AAAATATATATGAATTATAAAATGGA
* *
64098423 AAAATGTATATGTATTATAAAATG
1 AAAATATATATGAATTATAAAATG
64098447 TAAATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (26 bp):
AAAATATATATGAATTATAAAATGGA
Found at i:64101594 original size:14 final size:14
Alignment explanation
Indices: 64101575--64101601 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64101565 ACTTTTTAAA
64101575 TAATTTTTAATATG
1 TAATTTTTAATATG
64101589 TAATTTTTAATAT
1 TAATTTTTAATAT
64101602 TTTCTGAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (14 bp):
TAATTTTTAATATG
Found at i:64103345 original size:193 final size:193
Alignment explanation
Indices: 64103016--64104056 Score: 1401
Period size: 193 Copynumber: 5.4 Consensus size: 193
64103006 TTGTTCTTGC
* *
64103016 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGGCTTTG-TTGAATTATGAGTCTAGT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTT-AATTATGAGTCTAGT
64103080 TTTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCA
65 TTTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCA
** *
64103145 AAGTCAACATTATAACGCTATTAGCAACGGACAACAACTTGTACTTGCTAATGATCAATCAACA
130 AAGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATCAATCAACA
* *
64103209 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTCATTATGAATCTAGTT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTAATTATGAGTCTAGTT
* *
64103274 TTCCTTTTATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCAA
66 TTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCAA
** * *
64103339 AGTCAACATTATAACGCTATTAGCAACGGACAACAACTTGTACTTGCTAATGATCAATTAACA
131 AGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATCAATCAACA
* *
64103402 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTCATTATGAATCTAGTT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTAATTATGAGTCTAGTT
* * *
64103467 TTCCTTTTATTGGCATACAATCATTAGTTGATGAAGAGATAAAAATTAGGCTCATAA-TCTAGCA
66 TTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTC-AGCA
* *
64103531 AAGTCAACATTATAGGGCTATTAGCAACGGATAGCAACTTGTACTTGC-CATG-T---T-----
130 AAGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATCAATCAACA
* * * * * * * *
64103585 GA--TTGATAT-ATATCTAATTGAGGGCCAAGTTAATGTTGGCTTTGCTGAATAATGAGTCTAAT
1 CATGTTGAT-TGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTAATTATGAGTCTAGT
* * * *
64103647 TTTCCTTTCATTTGCATGCAATCATTAGTTGATGATGAGATAAAAACTAGACTCATAATCCAGCA
65 TTTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCA
** * *
64103712 AAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTTGTACTTGCCAATGATCAATCAACA
130 AAGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATCAATCAACA
* * * *
64103776 CATGTTAATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGCCTAGTT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTAATTATGAGTCTAGTT
* * * *
64103841 TTCCTTTCATTGGCATGCAATCAATAGTTGATGAAGAGAAAAAAAACACTAGGTTCATAATCCAG
66 TTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAG--ATAAAA-ACTAGGCTCATAATTCAG
* * * * * * *
64103906 CAAGGTGAACATTATAGGGCTATTAACAATGGATAATAACTTGTATTTGCAAATGATCAATCAAC
128 CAAAGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATCAATCAAC
64103971 A
193 A
* * * *
64103972 CATGTTGATTGATCTCTAGTTGAGAGCCAATTTAATGTCGACTTTGCTAAATTATGAGTCTAATT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTAATTATGAGTCTAGTT
* * *
64104037 TTTCTTTCATTTGCAAGCAA
66 TTCCTTTCATTGGCATGCAA
64104057 CGATCAATTT
Statistics
Matches: 761, Mismatches: 67, Indels: 37
0.88 0.08 0.04
Matches are distributed among these distances:
181 149 0.20
182 5 0.01
183 2 0.00
186 1 0.00
188 1 0.00
191 2 0.00
192 6 0.01
193 439 0.58
194 2 0.00
195 5 0.01
196 149 0.20
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (193 bp):
CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTAATTATGAGTCTAGTT
TTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCAA
AGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATCAATCAACA
Found at i:64103800 original size:374 final size:379
Alignment explanation
Indices: 64103016--64104047 Score: 1315
Period size: 374 Copynumber: 2.7 Consensus size: 379
64103006 TTGTTCTTGC
*
64103016 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGGCTTTG-TTGAATTATGAGTCTAGT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTT-AATTATGAGTCTAGT
64103080 TTTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAAT-TCAGC
65 TTTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATCT-AGC
** *
64103144 AAAGTCAACATTATAACGCTATTAGCAACGGACAACAACTTGTACTTGCTAATGATCAATCAACA
129 AAAGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGAT--AT----A
* ** * *
64103209 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTCATTATGAATCTAGTT
188 CA-GTTGATTGATATCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTGAATAATGAATCTAATT
* * *
64103274 TTCCTTTTATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCAA
252 TTCCTTTCATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCCAGCAA
* *
64103339 AGTCAACATTATAACGCTATTAGCAACGGACAACAACTTGTACTTGCTAATGATCAATTAACA
317 AGTCAACATTATAACGCTATTAGCAACGGACAACAACTTGTACTTGCCAATGATCAATCAACA
* * *
64103402 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTCATTATGAATCTAGTT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTTAATTATGAGTCTAGTT
* * *
64103467 TTCCTTTTATTGGCATACAATCATTAGTTGATGAAGAGATAAAAATTAGGCTCATAATCTAGCAA
66 TTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATCTAGCAA
* * *
64103532 AGTCAACATTATAGGGCTATTAGCAACGGATAGCAACTTGTACTTGC-CATG-T-T-GA-TTGAT
131 AGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATATACAGTTGAT
* * * *
64103592 AT-ATATCTAATTGAGGGCCAAGTTAATGTTGGCTTTGCTGAATAATGAGTCTAATTTTCCTTTC
196 -TGATATCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTGAATAATGAATCTAATTTTCCTTTC
* * * **
64103656 ATTTGCATGCAATCATTAGTTGATGATGAGATAAAAACTAGACTCATAATCCAGCAAAGTCAGTA
260 ATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCCAGCAAAGTCAACA
** * *
64103721 TTATAGGGCTATTAGCAATGGATAACAACTTGTACTTGCCAATGATCAATCAACA
325 TTATAACGCTATTAGCAACGGACAACAACTTGTACTTGCCAATGATCAATCAACA
* * *
64103776 CATGTTAATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGCCTAGTT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTTAATTATGAGTCTAGTT
* * * *
64103841 TTCCTTTCATTGGCATGCAATCAATAGTTGATGAAGAGAAAAAAAACACTAGGTTCATAATCCAG
66 TTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAG--ATAAAA-ACTAGGCTCATAATCTAG
* * * * * * *
64103906 CAAGGTGAACATTATAGGGCTATTAACAATGGATAATAACTTGTATTTGCAAATGATCAATCAAC
128 CAAAGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGAT--AT----
* * * * * *
64103971 ACATGTTGATTGATCTCTAGTTGAGAGCCAATTTAATGTCGACTTTGCTAAATTATGAGTCTAAT
187 ACA-GTTGATTGATATCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTGAATAATGAATCTAAT
*
64104036 TTTTCTTTCATT
251 TTTCCTTTCATT
64104048 TGCAAGCAAC
Statistics
Matches: 560, Mismatches: 67, Indels: 35
0.85 0.10 0.05
Matches are distributed among these distances:
374 258 0.46
375 1 0.00
376 6 0.01
377 58 0.10
378 3 0.01
379 1 0.00
381 1 0.00
382 1 0.00
384 1 0.00
385 3 0.01
386 161 0.29
387 4 0.01
388 1 0.00
389 61 0.11
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (379 bp):
CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTTAATTATGAGTCTAGTT
TTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATCTAGCAA
AGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATATACAGTTGAT
TGATATCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTGAATAATGAATCTAATTTTCCTTTCA
TTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCCAGCAAAGTCAACAT
TATAACGCTATTAGCAACGGACAACAACTTGTACTTGCCAATGATCAATCAACA
Found at i:64103985 original size:196 final size:193
Alignment explanation
Indices: 64103597--64104056 Score: 659
Period size: 196 Copynumber: 2.4 Consensus size: 193
64103587 TTGATATATA
* * *
64103597 TCTAATTGAGGGCCAAGTTAATGTTGGCTTTGCTGAATAATGAGTCTAATTTTCCTTTCATTTGC
1 TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAATTTTCCTTTCATTTGC
* * * **
64103662 ATGCAATCATTAGTTGATGATGAGATAAAAACTAGACTCATAATCCAGCAAAGTCAGTATTATAG
66 ATGCAATCAATAGTTGATGAAGAGAAAAAAACTAGACTCATAATCCAGCAAAGTCAACATTATAG
* *
64103727 GGCTATTAGCAATGGATAACAACTTGTACTTGCCAATGATCAATCAACACATGTTAATTGATC
131 GGCTATTAACAATGGATAACAACTTGTACTTGCAAATGATCAATCAACACATGTTAATTGATC
* * *
64103790 TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGC
1 TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAATTTTCCTTTCATTTGC
** * *
64103855 ATGCAATCAATAGTTGATGAAGAGAAAAAAAACACTAGGTTCATAATCCAGCAAGGTGAACATTA
66 ATGCAATCAATAGTTGATGAAGAG--AAAAAA-ACTAGACTCATAATCCAGCAAAGTCAACATTA
* * *
64103920 TAGGGCTATTAACAATGGATAATAACTTGTATTTGCAAATGATCAATCAACACATGTTGATTGAT
128 TAGGGCTATTAACAATGGATAACAACTTGTACTTGCAAATGATCAATCAACACATGTTAATTGAT
64103985 C
193 C
* * * * *
64103986 TCTAGTTGAGAGCCAATTTAATGTCGACTTTGCTAAATTATGAGTCTAATTTTTCTTTCATTTGC
1 TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAATTTTCCTTTCATTTGC
*
64104051 AAGCAA
66 ATGCAA
64104057 CGATCAATTT
Statistics
Matches: 235, Mismatches: 29, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
193 81 0.34
195 5 0.02
196 149 0.63
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (193 bp):
TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAATTTTCCTTTCATTTGC
ATGCAATCAATAGTTGATGAAGAGAAAAAAACTAGACTCATAATCCAGCAAAGTCAACATTATAG
GGCTATTAACAATGGATAACAACTTGTACTTGCAAATGATCAATCAACACATGTTAATTGATC
Found at i:64111146 original size:241 final size:240
Alignment explanation
Indices: 64110597--64111899 Score: 1783
Period size: 241 Copynumber: 5.5 Consensus size: 240
64110587 AACTCTAACA
* * * * * *
64110597 ATTAATTCGACTCTCAATTAAGGATCAAGATTTGTTAGATAAACAAATTA-ATTGATTGAAATTG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
** *
64110661 AATATGATCAATCTATTAATTAGTACCCATTTATCTAGCTTTAACACATATAAGATGCTTTCCAA
65 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * * * *
64110726 TGCTCATTGCTTTATAATGTCAACTTTTCTGGATGATGAGCCTAATTTTTATTTC-T--T--T-G
130 TGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCG
64110785 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
195 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * * * *
64110831 ACTAATTTGGCTCTCAATTAAGGATCAATATTTATTAGATAAACAAACTAAATCGATTGAAACCG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
*
64110896 ACCATGATCAATCTATTAATTAGTACCCGTTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
65 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * *
64110961 TGCTTGTGGCTTTATAATGACAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCG
130 TGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCG
* * *
64111026 GATGCAAATAAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAT
195 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
*
64111072 ATTAATTTGACTCTAAATTAAGGATCGACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
* *
64111137 GCCATGATCAATATATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
65 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * *
64111202 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTT--TAT-TTC-T--TCG
130 TGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCG
*
64111261 CATGCAAATGAAAGGAAAGTTAGACTCATAATTTAGCAAAGTCGAC
195 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * * * * *
64111307 ACTAATTTGGCTCTCAATTAAGGATAGACATATATTAGATAAACAAACTAGATTGATTGAAACCG
1 ATTAATTTGACTCTCAATTAAGGAT-CACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
* * * *
64111372 ACCATGATCAATCTATTAATTAGTACTCGTTTGTCTAGTTTTAACACATAAAAGATGCTTTCCAA
65 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* *
64111437 TGCTTGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCG
130 TGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCG
* *
64111502 CATGCAAATGAAAGGAAAATTAGACTCATAATTTAGCAAAGTCGAC
195 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * * *
64111548 ATTAATTTGACTCTCAATTAAAGATCAGCATTTATTAGATAAATAAACTCGGTCGATTGAAA-TC
1 ATTAATTTGACTCTCAATTAAGGATCA-CATTTATTAGATAAACAAACTAGATCGATTGAAACT-
* *
64111612 GACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAAATATAAGATGCTTTCTA
64 GACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCA
* * * * * * * *
64111677 ATGCTCGTAGCCTTATAATGTCAATTTTGTTGGATTGTGAACGTAGTTTTCATTTCTTCATCATT
129 ATGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATC
** * *
64111742 GCATGCAAATGAAAGGAAAACTAAACTCATAATTCAGCAAAGTCAAC
194 GCATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * *
64111789 ATTAATTT-AGCTTTCAATTAAGGATCAGCTTTTATTAGATAAACAAACTAAATCGATT-AAGAC
1 ATTAATTTGA-CTCTCAATTAAGGATCA-CATTTATTAGATAAACAAACTAGATCGATTGAA-AC
* *
64111852 TGACCATGCTCCATCTATTAATTAGTACCCATTTATCTAGTTTTAACA
63 TGACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACA
64111900 ATTTTCTAAT
Statistics
Matches: 950, Mismatches: 100, Indels: 31
0.88 0.09 0.03
Matches are distributed among these distances:
234 44 0.05
235 327 0.34
236 1 0.00
237 3 0.00
238 6 0.01
239 3 0.00
240 5 0.01
241 560 0.59
242 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (240 bp):
ATTAATTTGACTCTCAATTAAGGATCACATTTATTAGATAAACAAACTAGATCGATTGAAACTGA
CCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAAT
GCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCGC
ATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
Found at i:64111542 original size:476 final size:475
Alignment explanation
Indices: 64110597--64111899 Score: 1932
Period size: 476 Copynumber: 2.7 Consensus size: 475
64110587 AACTCTAACA
* * * * *
64110597 ATTAATTCGACTCTCAATTAAGGATCAAGATTTGTTAGATAAACAAATTA-ATTGATTGAAATTG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAA-TG
** *
64110661 AATATGATCAATCTATTAATTAGTACCCATTTATCTAGCTTTAACACATATAAGATGCTTTCCAA
64 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * *
64110726 TGCTCATTGCTTTATAATGTCAACTTTTCTGGATGATGAGCCTAATTTTTATTTCTTTGCATGCA
129 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTCTTCGCATGCA
64110791 AATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGAT
194 AATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGAT
*
64110856 CA-ATATTTATTAGATAAACAAACTAAATCGATTGAAACCGACCATGATCAATCTATTAATTAGT
259 CAGACATTTATTAGATAAACAAACTAAATCGATTGAAACCGACCATGATCAATCTATTAATTAGT
* *
64110920 ACCCGTTTATCTAGTTTTAACACATATAAGATGCTTTCCAATGCTTGTGGCTTTATAATGACAAC
324 ACCCGTTTATCTAGTTTTAACACATAAAAGATGCTTTCCAATGCTTGTAGCTTTATAATGACAAC
* * *
64110985 TTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCGGATGCAAATAAAAGGAAAGTTAGA
389 TTTGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCGCATGCAAATAAAAGGAAAATTAGA
*
64111050 CTCATAATTCAGCAAAGTCGAT
454 CTCATAATTCAGCAAAGTCGAC
*
64111072 ATTAATTTGACTCTAAATTAAGGATCGACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAA-TG
* *
64111137 GCCATGATCAATATATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
64 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
64111202 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTCTTCGCATGCA
129 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTCTTCGCATGCA
*
64111267 AATGAAAGGAAAGTTAGACTCATAATTTAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGAT
194 AATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGAT
* * *
64111332 -AGACATATATTAGATAAACAAACTAGATTGATTGAAACCGACCATGATCAATCTATTAATTAGT
259 CAGACATTTATTAGATAAACAAACTAAATCGATTGAAACCGACCATGATCAATCTATTAATTAGT
* * *
64111396 ACTCGTTTGTCTAGTTTTAACACATAAAAGATGCTTTCCAATGCTTGTAGCTTTATAATGTCAAC
324 ACCCGTTTATCTAGTTTTAACACATAAAAGATGCTTTCCAATGCTTGTAGCTTTATAATGACAAC
*
64111461 TTTGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCGCATGCAAATGAAAGGAAAATTAGA
389 TTTGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCGCATGCAAATAAAAGGAAAATTAGA
*
64111526 CTCATAATTTAGCAAAGTCGAC
454 CTCATAATTCAGCAAAGTCGAC
* * * *
64111548 ATTAATTTGACTCTCAATTAAAGATCAGCATTTATTAGATAAATAAACTCGGTCGATTGAAATCG
1 ATTAATTTGACTCTCAATTAAGGATCA-CATTTATTAGATAAACAAACTAGATCGATTGAAAT-G
* *
64111613 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAAATATAAGATGCTTTCTAA
64 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * * * * * * * * *
64111678 TGCTCGTAGCCTTATAATGTCAATTTTGTTGGATTGTGAACGTAGTTTTCATTTCTTCATCATTG
129 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTC-T--TC---G
** * * * * *
64111743 CATGCAAATGAAAGGAAAACTAAACTCATAATTCAGCAAAGTCAACATTAATTTAGCTTTCAATT
188 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATT
* * * *
64111808 AAGGATCAG-CTTTTATTAGATAAACAAACTAAATCGATT-AAGACTGACCATGCTCCATCTATT
253 AAGGATCAGACATTTATTAGATAAACAAACTAAATCGATTGAA-ACCGACCATGATCAATCTATT
*
64111871 AATTAGTACCCATTTATCTAGTTTTAACA
317 AATTAGTACCCGTTTATCTAGTTTTAACA
64111900 ATTTTCTAAT
Statistics
Matches: 747, Mismatches: 69, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
475 47 0.06
476 559 0.75
477 1 0.00
479 2 0.00
481 2 0.00
482 134 0.18
483 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (475 bp):
ATTAATTTGACTCTCAATTAAGGATCACATTTATTAGATAAACAAACTAGATCGATTGAAATGAC
CATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAATG
CTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTCTTCGCATGCAAA
TGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGATCA
GACATTTATTAGATAAACAAACTAAATCGATTGAAACCGACCATGATCAATCTATTAATTAGTAC
CCGTTTATCTAGTTTTAACACATAAAAGATGCTTTCCAATGCTTGTAGCTTTATAATGACAACTT
TGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCGCATGCAAATAAAAGGAAAATTAGACT
CATAATTCAGCAAAGTCGAC
Found at i:64113566 original size:17 final size:17
Alignment explanation
Indices: 64113528--64113566 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
64113518 AATTGAATCG
64113528 ATTTAAAGATTTTAATT
1 ATTTAAAGATTTTAATT
*
64113545 TTTTAAAGAATTTT-ATT
1 ATTTAAAG-ATTTTAATT
64113562 ATTTA
1 ATTTA
64113567 TAACTAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (17 bp):
ATTTAAAGATTTTAATT
Found at i:64120083 original size:60 final size:60
Alignment explanation
Indices: 64120009--64120122 Score: 169
Period size: 60 Copynumber: 1.9 Consensus size: 60
64119999 ACTTATTTTT
*
64120009 TTGTAATTATAATTT-TATGAATTTTTAAAATAAAGATCGAATTGACATAATGTGGAAACA
1 TTGTAATTATAATTTGT-TGAATTTTTAAAATAAAGATCAAATTGACATAATGTGGAAACA
* *
64120069 TTGTAAGTTA-AATTTGTTGAATTTTTAAAATTAGGATCAAATTGACATAATGTG
1 TTGTAA-TTATAATTTGTTGAATTTTTAAAATAAAGATCAAATTGACATAATGTG
64120123 TAGAATATCA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
60 45 0.92
61 4 0.08
ACGTcount: A:0.40, C:0.04, G:0.15, T:0.40
Consensus pattern (60 bp):
TTGTAATTATAATTTGTTGAATTTTTAAAATAAAGATCAAATTGACATAATGTGGAAACA
Found at i:64126732 original size:9 final size:8
Alignment explanation
Indices: 64126696--64126728 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
64126686 AGGGTTCTTT
*
64126696 GTTTTCGA
1 GTTTTCGG
64126704 GTTTTCGG
1 GTTTTCGG
64126712 GTTTTCGG
1 GTTTTCGG
64126720 GTTTTCGG
1 GTTTTCGG
64126728 G
1 G
64126729 GTTTAGTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.03, C:0.12, G:0.36, T:0.48
Consensus pattern (8 bp):
GTTTTCGG
Found at i:64129411 original size:14 final size:14
Alignment explanation
Indices: 64129392--64129426 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
64129382 GACATTTTTT
* *
64129392 TTCTAATGATATTA
1 TTCTAACGATACTA
64129406 TTCTAACGATACTA
1 TTCTAACGATACTA
64129420 TTCTAAC
1 TTCTAAC
64129427 ATGTAATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (14 bp):
TTCTAACGATACTA
Found at i:64130688 original size:65 final size:64
Alignment explanation
Indices: 64130584--64130815 Score: 283
Period size: 65 Copynumber: 3.6 Consensus size: 64
64130574 AGATTAATTG
**
64130584 CAACATTAAAACTTGGAACAAACTTTATGGTCATAAATTAGATTAATTGCAACATTACAACATTA
1 CAACATTAAAACTTGGAACAAACTTTATAAT-ATAAATTAGATTAATTGCAACATTACAACATTA
* *
64130649 CAACATTAAAACTTGGAACAAACTTTGTAGTCATAAATTAGATTAATTGCAACATTACAACATTA
1 CAACATTAAAACTTGGAACAAACTTTATAAT-ATAAATTAGATTAATTGCAACATTACAACATTA
* ** *
64130714 CAACATTAAAATTTGGAACAAACTTTATAATATAAATT-TTTTAATAT--AA-ATTAAATACATT
1 CAACATTAAAACTTGGAACAAACTTTATAATATAAATTAGATTAAT-TGCAACATTACA-ACATT
64130775 A
64 A
* * * **
64130776 TAATATTAAAAATTGGAACAAACTTGGTAATATAAATTAG
1 CAACATTAAAACTTGGAACAAACTTTATAATATAAATTAG
64130816 GTACATTGGA
Statistics
Matches: 150, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
61 5 0.03
62 41 0.27
63 5 0.03
64 8 0.05
65 91 0.61
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (64 bp):
CAACATTAAAACTTGGAACAAACTTTATAATATAAATTAGATTAATTGCAACATTACAACATTA
Found at i:64132141 original size:676 final size:677
Alignment explanation
Indices: 64130809--64132165 Score: 2256
Period size: 676 Copynumber: 2.0 Consensus size: 677
64130799 TTGGTAATAT
* *
64130809 AAATTAGGTACATTGGATTACATAAGCTCAATTCCTACCCGATCGTGACGATTGTCCAATATGGT
1 AAATTAGGTACAATGGATTACATAAGCTCAATTCCTACCCGATCGTGACAATTGTCCAATATGGT
* * *
64130874 AGTTTCGCTTCGAGCATTTACTTCGATTATGACCAGCTAATCTGCATAATCCACAACGCTTACCG
66 AGTTTCGCTGCGAGCATTTACTTCAATTATGACCAGCTAATCTGCATAATCCACAACGCTTAACG
* *
64130939 TCGGATTTCTCCTTAATGTCCATTTCATTATGGATTCAGGATGATTACGGACGACCTTTTGAATT
131 TCGGATTTCTCCCTAATGTCCATTTCATTATGGATTCAGGATAATTACGGACGACCTTTTGAATT
*
64131004 CCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGATAGGT
196 CCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGACAGGT
* * * *
64131069 CAGGTAGGATGGGGAACTCATTCTCCCAGACACACAACGTGCGCTTGAGGGTGTACACATCATCG
261 CAGATAGGACGGGGAACTCATTCTCCCAGACACACAACGTGCGCTTGAAGGTGTACACATCATCA
* *
64131134 ACAAATTATTCAATATTGAGCAAGACTTTAGCATATGCTGTCACGACATGCTTAAATAGATAAAG
326 ACAAATTATTCAATATTGAGCAAGACTTTAGCACATGCTGCCACGACATGCTTAAATAGATAAAG
*
64131199 AAGTGTTTGGAACCTCTTGCAATCGCACCGTCTATTTCGGAGATCAACTCCATAGGACCTAGATA
391 AAGTGTTTGGAACCTCTTACAATCGCACCGTCTATTTCGGAGATCAACTCCATAGGACCTAGATA
* * * *
64131264 GTATACTGGGTCGACGATCAATGGTCTCTGTAACTTAAAATGGTTCAAGACATCGTGAATATACT
456 GTATACTGAGTCAACGATCAATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATATACT
* *
64131329 TCTACATTCATCAACCTCGCAATCCAACGGTTTGCAACCATTGCATCCTTAACATCTTCAATAAA
521 TCTACATTCATCAACCTCACAATCCAACGGTTTGCAACCATTGCATCCTTAACATCTTCAACAAA
*
64131394 CACGTGTTTCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAACC
586 CACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAACC
64131459 TGTAGAATGTAGCCGAGAAGACAGATG
651 TGTAGAATGTAGCCGAGAAGACAGATG
* *
64131486 AAATTAGGTACAATGGATTACGTAAGCTTAATTCCTACCC-ATCGTGACAATTGTCCAATATGGT
1 AAATTAGGTACAATGGATTACATAAGCTCAATTCCTACCCGATCGTGACAATTGTCCAATATGGT
64131550 AGTTTCGCTGCGAGCATTTA-TTCCAATTATGACCAGCTAATCTGCATAATCCACAACGCTTAAC
66 AGTTTCGCTGCGAGCATTTACTT-CAATTATGACCAGCTAATCTGCATAATCCACAACGCTTAAC
* *
64131614 GTCGGATTTCTCCCTAATGTCTATTTCATTATGGATTCAGGATAATTGCGGACGACCTTTTGAAT
130 GTCGGATTTCTCCCTAATGTCCATTTCATTATGGATTCAGGATAATTACGGACGACCTTTTGAAT
64131679 TCCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGACAGG
195 TCCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGACAGG
*
64131744 TCAGATAGGACGGGGAACTCATTCTCCCAGACACACAACGTGCTCTTGAAGGTGTACACATCATC
260 TCAGATAGGACGGGGAACTCATTCTCCCAGACACACAACGTGCGCTTGAAGGTGTACACATCATC
* * *
64131809 AACAAATTGTTCAACT-TTGAGCAAGACTTTAGCACATGTTGCCACGACATG-TGTAAATGGATA
325 AACAAATTATTCAA-TATTGAGCAAGACTTTAGCACATGCTGCCACGACATGCT-TAAATAGATA
* *
64131872 AAGAAGTGTTTGGAACCTTTTACAATCGCACCGTCTATTTCGGAGATCAACTTCATAGGACCTAG
388 AAGAAGTGTTTGGAACCTCTTACAATCGCACCGTCTATTTCGGAGATCAACTCCATAGGACCTAG
* * * * * *
64131937 ATAGTATAAC-GAGTTAACGATCGATGGTCTCTGTAACTCGAAACGTTTCAAGTCATCTTGAATA
453 ATAGTAT-ACTGAGTCAACGATCAATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATA
* * * *
64132001 TACTTCTACATTCATCGACCTCACAATCCGACGGTTTGCAACTATTGCATCCTTGACATCTTCAA
517 TACTTCTACATTCATCAACCTCACAATCCAACGGTTTGCAACCATTGCATCCTTAACATCTTCAA
64132066 CAAACACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCC
582 CAAACACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCC
*
64132131 AACCTGTAGAATGTAGCCGAGAAGATAGATG
647 AACCTGTAGAATGTAGCCGAGAAGACAGATG
64132162 AAAT
1 AAAT
64132166 CGAAAGATGT
Statistics
Matches: 633, Mismatches: 43, Indels: 9
0.92 0.06 0.01
Matches are distributed among these distances:
675 3 0.00
676 590 0.93
677 40 0.06
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (677 bp):
AAATTAGGTACAATGGATTACATAAGCTCAATTCCTACCCGATCGTGACAATTGTCCAATATGGT
AGTTTCGCTGCGAGCATTTACTTCAATTATGACCAGCTAATCTGCATAATCCACAACGCTTAACG
TCGGATTTCTCCCTAATGTCCATTTCATTATGGATTCAGGATAATTACGGACGACCTTTTGAATT
CCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGACAGGT
CAGATAGGACGGGGAACTCATTCTCCCAGACACACAACGTGCGCTTGAAGGTGTACACATCATCA
ACAAATTATTCAATATTGAGCAAGACTTTAGCACATGCTGCCACGACATGCTTAAATAGATAAAG
AAGTGTTTGGAACCTCTTACAATCGCACCGTCTATTTCGGAGATCAACTCCATAGGACCTAGATA
GTATACTGAGTCAACGATCAATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATATACT
TCTACATTCATCAACCTCACAATCCAACGGTTTGCAACCATTGCATCCTTAACATCTTCAACAAA
CACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAACC
TGTAGAATGTAGCCGAGAAGACAGATG
Found at i:64139952 original size:8 final size:8
Alignment explanation
Indices: 64139939--64139967 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
64139929 AGATACAAAC
64139939 TCTTTTTT
1 TCTTTTTT
64139947 TC-TTTTT
1 TCTTTTTT
64139954 TCTTTTTT
1 TCTTTTTT
64139962 TCTTTT
1 TCTTTT
64139968 CTGAAATGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (8 bp):
TCTTTTTT
Done.