Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 216 of 230
Found at i:64139959 original size:15 final size:15
Alignment explanation
Indices: 64139939--64139967 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64139929 AGATACAAAC
64139939 TCTTTTTTTCTTTTT
1 TCTTTTTTTCTTTTT
64139954 TCTTTTTTTCTTTT
1 TCTTTTTTTCTTTT
64139968 CTGAAATGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TCTTTTTTTCTTTTT
Found at i:64140811 original size:22 final size:21
Alignment explanation
Indices: 64140780--64140855 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 21
64140770 ATAATACCCA
*
64140780 AATAAA-AATAATAAAATAAT
1 AATAAACAATAACAAAATAAT
* *
64140800 AATAATACAATAGCAAAATAGT
1 AATAA-ACAATAACAAAATAAT
*
64140822 AGTAAAACAATAACAAACAGTAAT
1 AAT-AAACAATAACAAA-A-TAAT
64140846 AATAAACAAT
1 AATAAACAAT
64140856 TGTAAAAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
20 5 0.11
21 1 0.02
22 23 0.52
23 10 0.23
24 5 0.11
ACGTcount: A:0.66, C:0.08, G:0.05, T:0.21
Consensus pattern (21 bp):
AATAAACAATAACAAAATAAT
Found at i:64140819 original size:36 final size:36
Alignment explanation
Indices: 64140750--64140819 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
64140740 TAGCAAAATT
* *
64140750 AATAATAAAATAAAAATTAAATAATACCCAAATAAA
1 AATAATAAAATAAAAATTAAACAATACCAAAATAAA
* *
64140786 AATAATAAAATAATAA-TAATACAATAGCAAAATA
1 AATAATAAAATAAAAATTAA-ACAATACCAAAATA
64140820 GTAGTAAAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 3 0.10
36 26 0.90
ACGTcount: A:0.69, C:0.07, G:0.01, T:0.23
Consensus pattern (36 bp):
AATAATAAAATAAAAATTAAACAATACCAAAATAAA
Found at i:64142488 original size:21 final size:20
Alignment explanation
Indices: 64142464--64142507 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
64142454 CTGATTAATA
*
64142464 TAATTTTAATATTTT-AAGATT
1 TAATTATAAT-TTTTCAA-ATT
64142485 TAATTATAATTTTTCAAATT
1 TAATTATAATTTTTCAAATT
64142505 TAA
1 TAA
64142508 GAACCATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
TAATTATAATTTTTCAAATT
Found at i:64142613 original size:21 final size:21
Alignment explanation
Indices: 64142587--64142626 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
64142577 TAAGAAAGAA
64142587 CTCAAAATATAATATTTATTG
1 CTCAAAATATAATATTTATTG
*
64142608 CTCAAAATATAGTATTTAT
1 CTCAAAATATAATATTTAT
64142627 AGCATGATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.42
Consensus pattern (21 bp):
CTCAAAATATAATATTTATTG
Found at i:64146510 original size:5 final size:5
Alignment explanation
Indices: 64146500--64146533 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
64146490 GAAGGAATTG
*
64146500 GATGA GATGA GATGA GATGA GATGA GATGG GATG
1 GATGA GATGA GATGA GATGA GATGA GATGA GATG
64146534 CAGTTCCTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.44, T:0.21
Consensus pattern (5 bp):
GATGA
Found at i:64146910 original size:5 final size:5
Alignment explanation
Indices: 64146900--64146924 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
64146890 TTTTAAAAAA
64146900 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
64146925 GAAGTTGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:64146915 original size:23 final size:24
Alignment explanation
Indices: 64146859--64146917 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
64146849 TTTTATTCAA
* *
64146859 ATTTGATTTTGAAAATATTAATTTT
1 ATTTTATTTT-AAAAAATTAATTTT
64146884 -TTTTAATTTTAAAAAATT-ATTTT
1 ATTTT-ATTTTAAAAAATTAATTTT
64146907 ATTTTATTTTA
1 ATTTTATTTTA
64146918 TTTTATTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
23 11 0.37
24 14 0.47
25 5 0.17
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (24 bp):
ATTTTATTTTAAAAAATTAATTTT
Found at i:64153328 original size:3 final size:3
Alignment explanation
Indices: 64153322--64153474 Score: 64
Period size: 3 Copynumber: 51.7 Consensus size: 3
64153312 GTAATGAAAG
* *
64153322 ATA ATA ATA ATT ATA ATA ATA AT- ATCA ATA ATA ATA TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
* * * * ** * *
64153367 TTA ATA AGA A-A AAA ATA GTA ATA GCA TTA ATA ATA AT- TTA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * * * * * *
64153411 ATA ATG TTA ATA GTA ATA A-A AGA ACA ATA A-A ACTT ATA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA
** *
64153455 AGG CTA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
64153475 GATGATGATG
Statistics
Matches: 108, Mismatches: 34, Indels: 16
0.68 0.22 0.10
Matches are distributed among these distances:
2 9 0.08
3 94 0.87
4 5 0.05
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:64153479 original size:3 final size:3
Alignment explanation
Indices: 64153473--64153498 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
64153463 AATAATAATA
64153473 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
64153499 AATAAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:64159070 original size:22 final size:21
Alignment explanation
Indices: 64159045--64159086 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
64159035 AAATATTTTT
* *
64159045 AAAAGTATTTTTGAAAAAAAG
1 AAAAATATTTTTCAAAAAAAG
*
64159066 AAAAATATTTTTCAGAAAAAG
1 AAAAATATTTTTCAAAAAAAG
64159087 CTAAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.57, C:0.02, G:0.12, T:0.29
Consensus pattern (21 bp):
AAAAATATTTTTCAAAAAAAG
Found at i:64159092 original size:22 final size:21
Alignment explanation
Indices: 64159044--64159097 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
64159034 GAAATATTTT
*
64159044 TAAAAGTATTTTTGAAAAAAAG
1 TAAAA-TATTTTTCAAAAAAAG
* *
64159066 AAAAATATTTTTCAGAAAAAG
1 TAAAATATTTTTCAAAAAAAG
64159087 CTAAAAT-TTTT
1 -TAAAATATTTT
64159098 AACTTTTGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.52, C:0.04, G:0.09, T:0.35
Consensus pattern (21 bp):
TAAAATATTTTTCAAAAAAAG
Found at i:64162922 original size:13 final size:14
Alignment explanation
Indices: 64162904--64162944 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
64162894 TTTTCAAAGA
64162904 TATGGTTTAGGA-T
1 TATGGTTTAGGACT
*
64162917 TATGGTTTATGACT
1 TATGGTTTAGGACT
*
64162931 TACGGTTTA-GACT
1 TATGGTTTAGGACT
64162944 T
1 T
64162945 TAGGGGTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 16 0.64
14 9 0.36
ACGTcount: A:0.22, C:0.07, G:0.24, T:0.46
Consensus pattern (14 bp):
TATGGTTTAGGACT
Found at i:64163148 original size:35 final size:36
Alignment explanation
Indices: 64163109--64163186 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 36
64163099 GTTAATTGAC
** * *
64163109 GGGTTTAGGGTTTAAGTTT-TACGATTTGGGGTTTG
1 GGGTTTAGGGTAAAAGTTTATACAATTTGGGGTTTA
*
64163144 GGGTTTAGGGTAAAAGTTTATATAATTTGGGGTTTA
1 GGGTTTAGGGTAAAAGTTTATACAATTTGGGGTTTA
64163180 GGGTTTA
1 GGGTTTA
64163187 CGATTAATTA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 17 0.46
36 20 0.54
ACGTcount: A:0.21, C:0.01, G:0.35, T:0.44
Consensus pattern (36 bp):
GGGTTTAGGGTAAAAGTTTATACAATTTGGGGTTTA
Found at i:64164386 original size:16 final size:16
Alignment explanation
Indices: 64164365--64164396 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
64164355 ACTTAGTAAT
64164365 TAAAAGATACAGTTAA
1 TAAAAGATACAGTTAA
64164381 TAAAAGATACAGTTAA
1 TAAAAGATACAGTTAA
64164397 GAAATAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (16 bp):
TAAAAGATACAGTTAA
Found at i:64165467 original size:47 final size:47
Alignment explanation
Indices: 64165398--64165491 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 47
64165388 TGCTTCGATT
*
64165398 CCCCTTCCAAAAGATAATTTAGGGCTTGATTAATGCATATGGAGGTG
1 CCCCTTCCAAAAGATAATTTAGGACTTGATTAATGCATATGGAGGTG
* * * *
64165445 CCCCTTCTAAAATATAATTTAGGATTTGATTAATGCATGTGGAGGTG
1 CCCCTTCCAAAAGATAATTTAGGACTTGATTAATGCATATGGAGGTG
64165492 GTCTAGCGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (47 bp):
CCCCTTCCAAAAGATAATTTAGGACTTGATTAATGCATATGGAGGTG
Found at i:64165994 original size:9 final size:9
Alignment explanation
Indices: 64165980--64166432 Score: 165
Period size: 9 Copynumber: 49.6 Consensus size: 9
64165970 ATTAATATTA
*
64165980 TACATAAAT
1 TACATAACT
64165989 TACATAACT
1 TACATAACT
64165998 TA-ATTAA-T
1 TACA-TAACT
*
64166006 TA-AT-ATT
1 TACATAACT
64166013 ATACATAACT
1 -TACATAACT
64166023 TAC--AACT
1 TACATAACT
64166030 TACATAACT
1 TACATAACT
*
64166039 TACATTAATATT
1 TACA-T-A-ACT
*
64166051 ATACATAAAT
1 -TACATAACT
64166061 TACATAACT
1 TACATAACT
64166070 TA-ATTAA-T
1 TACA-TAACT
* *
64166078 TATATTA--
1 TACATAACT
64166085 TACATAACT
1 TACATAACT
*
64166094 TACCTAACT
1 TACATAACT
64166103 TA-ATTAA-T
1 TACA-TAACT
*
64166111 TA-AT-ATT
1 TACATAACT
*
64166118 ATACAGAACT
1 -TACATAACT
64166128 TAC--AACT
1 TACATAACT
64166135 TACATAACT
1 TACATAACT
*
64166144 TACATTAATAT
1 TACA-TAA-CT
*
64166155 TACACATAAAT
1 T--ACATAACT
64166166 TACATAACT
1 TACATAACT
*
64166175 TACATTAATATT
1 TACA-T-A-ACT
*
64166187 ATACATAAAT
1 -TACATAACT
64166197 TACATAACT
1 TACATAACT
64166206 TA-ATTAA-T
1 TACA-TAACT
*
64166214 TA-AT-ATT
1 TACATAACT
64166221 ATACATAACT
1 -TACATAACT
64166231 TAC--AACT
1 TACATAACT
64166238 TACATAACT
1 TACATAACT
*
64166247 TACATTAATATT
1 TACA-T-A-ACT
*
64166259 ATACATAAAT
1 -TACATAACT
64166269 TACATAACT
1 TACATAACT
*
64166278 TACATTAATATT
1 TACA-T-A-ACT
*
64166290 ATACATAAAT
1 -TACATAACT
64166300 TACATAACT
1 TACATAACT
64166309 TA-ATTAA-T
1 TACA-TAACT
*
64166317 TA-AT-ATT
1 TACATAACT
64166324 ATACATAACT
1 -TACATAACT
64166334 TAC--AACT
1 TACATAACT
64166341 TACATAACT
1 TACATAACT
*
64166350 TACATTAATAT
1 TACA-TAA-CT
64166361 TACACATAACT
1 T--ACATAACT
64166372 TACATAACT
1 TACATAACT
64166381 TAC--AACT
1 TACATAACT
64166388 TACATAACT
1 TACATAACT
*
64166397 TACATTAATATT
1 TACA-T-A-ACT
*
64166409 ATACATAAAT
1 -TACATAACT
64166419 TACATAACT
1 TACATAACT
64166428 TACAT
1 TACAT
64166433 TAATATGACA
Statistics
Matches: 352, Mismatches: 30, Indels: 124
0.70 0.06 0.25
Matches are distributed among these distances:
6 4 0.01
7 48 0.14
8 33 0.09
9 172 0.49
10 29 0.08
11 19 0.05
12 21 0.06
13 26 0.07
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (9 bp):
TACATAACT
Found at i:64166064 original size:31 final size:31
Alignment explanation
Indices: 64166029--64166384 Score: 336
Period size: 31 Copynumber: 10.5 Consensus size: 31
64166019 AACTTACAAC
64166029 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
*
64166060 TTACATAACTTA-ATTAATTATATTATACATAAC
1 TTACATAACTTACATT-A--ATATTATACATAAA
* *
64166093 TTACCTAACTTAATTAATTAATATTATACAGAACTTACAA
1 TTACATAACTT-A--CATTAATATTATAC---A--TA-AA
*
64166133 CTTACATAACTTACATTAATATTACACATAAA
1 -TTACATAACTTACATTAATATTATACATAAA
64166165 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
*
64166196 TTACATAACTTAATTAATTAATATTATACATAACTTACAA
1 TTACATAACTT-A--CATTAATATTATAC---A--TA-AA
64166236 CTTACATAACTTACATTAATATTATACATAAA
1 -TTACATAACTTACATTAATATTATACATAAA
64166268 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
*
64166299 TTACATAACTTAATTAATTAATATTATACATAACTTACAA
1 TTACATAACTT-A--CATTAATATTATAC---A--TA-AA
* *
64166339 CTTACATAACTTACATTAATATTACACATAAC
1 -TTACATAACTTACATTAATATTATACATAAA
64166371 TTACATAACTTACA
1 TTACATAACTTACA
64166385 ACTTACATAA
Statistics
Matches: 278, Mismatches: 13, Indels: 68
0.77 0.04 0.19
Matches are distributed among these distances:
30 3 0.01
31 110 0.40
32 7 0.03
33 29 0.10
34 36 0.13
35 3 0.01
36 1 0.00
37 6 0.02
38 37 0.13
39 6 0.02
40 8 0.03
41 32 0.12
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (31 bp):
TTACATAACTTACATTAATATTATACATAAA
Found at i:64166108 original size:24 final size:24
Alignment explanation
Indices: 64166061--64166108 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
64166051 ATACATAAAT
*
64166061 TACATAACTTAATTAATTATATTA
1 TACATAACTTAACTAATTATATTA
*
64166085 TACATAACTTACCTAACTTA-ATTA
1 TACATAACTTAACTAA-TTATATTA
64166109 ATTAATATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.42
Consensus pattern (24 bp):
TACATAACTTAACTAATTATATTA
Found at i:64166240 original size:103 final size:103
Alignment explanation
Indices: 64165968--64166384 Score: 746
Period size: 103 Copynumber: 4.0 Consensus size: 103
64165958 TGTAGAAGCC
64165968 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACAACTTAC
1 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACAACTTAC
*
64166033 ATAACTTACATTAATATTATACATAAATTACATAACTT
66 ATAACTTACATTAATATTACACATAAATTACATAACTT
* * *
64166071 A-ATTAATTATATTATACATAACTTACCTAACTTAATTAATTAATATTATACAGAACTTACAACT
1 ACATT-A--ATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACAACT
64166135 TACATAACTTACATTAATATTACACATAAATTACATAACTT
63 TACATAACTTACATTAATATTACACATAAATTACATAACTT
64166176 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACAACTTAC
1 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACAACTTAC
*
64166241 ATAACTTACATTAATATTATACATAAATTACATAACTT
66 ATAACTTACATTAATATTACACATAAATTACATAACTT
64166279 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACAACTTAC
1 ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACAACTTAC
*
64166344 ATAACTTACATTAATATTACACATAACTTACATAACTT
66 ATAACTTACATTAATATTACACATAAATTACATAACTT
64166382 ACA
1 ACA
64166385 ACTTACATAA
Statistics
Matches: 300, Mismatches: 10, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
102 3 0.01
103 199 0.66
105 95 0.32
106 3 0.01
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (103 bp):
ACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACAACTTAC
ATAACTTACATTAATATTACACATAAATTACATAACTT
Found at i:64166276 original size:47 final size:47
Alignment explanation
Indices: 64166222--64166431 Score: 127
Period size: 47 Copynumber: 4.3 Consensus size: 47
64166212 ATTAATATTA
64166222 TACATAACTTACAACTTACATAACTTACATTAATATTATACATAAAT
1 TACATAACTTACAACTTACATAACTTACATTAATATTATACATAAAT
* *
64166269 TACATAACTTAC-A-TTA-AT-ATTATACA-TAA-A-T-TACATAACT
1 TACATAACTTACAACTTACATAACT-TACATTAATATTATACATAAAT
* *
64166309 TA-ATTAA-TTA-ATATTATACATAACTTACAACTTACATAACTTACATTAATATTACACATAAC
1 TACA-TAACTTACA-ACT-TACATAACTTAC-A-TTA-AT-A-TT--A-T-ACA-T----A-AA-
64166371 T
47 T
64166372 TACATAACTTACAACTTACATAACTTACATTAATATTATACATAAAT
1 TACATAACTTACAACTTACATAACTTACATTAATATTATACATAAAT
64166419 TACATAACTTACA
1 TACATAACTTACA
64166432 TTAATATGAC
Statistics
Matches: 125, Mismatches: 7, Indels: 62
0.64 0.04 0.32
Matches are distributed among these distances:
39 4 0.03
40 14 0.11
41 2 0.02
42 3 0.02
43 10 0.08
44 9 0.07
45 3 0.02
46 3 0.02
47 27 0.22
48 2 0.02
49 2 0.02
51 1 0.01
53 1 0.01
54 2 0.02
55 2 0.02
56 3 0.02
57 1 0.01
58 2 0.02
59 1 0.01
60 2 0.02
61 4 0.03
62 2 0.02
63 18 0.14
64 6 0.05
65 1 0.01
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.37
Consensus pattern (47 bp):
TACATAACTTACAACTTACATAACTTACATTAATATTATACATAAAT
Found at i:64166346 original size:16 final size:16
Alignment explanation
Indices: 64166325--64166400 Score: 86
Period size: 16 Copynumber: 4.8 Consensus size: 16
64166315 ATTAATATTA
64166325 TACATAACTTACAACT
1 TACATAACTTACAACT
64166341 TACATAACTTAC-A-T
1 TACATAACTTACAACT
** *
64166355 TA-ATATTACACATAACT
1 TACATA--ACTTACAACT
64166372 TACATAACTTACAACT
1 TACATAACTTACAACT
64166388 TACATAACTTACA
1 TACATAACTTACA
64166401 TTAATATTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
13 3 0.06
14 3 0.06
15 4 0.08
16 33 0.67
17 3 0.06
18 3 0.06
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.33
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:64166454 original size:18 final size:19
Alignment explanation
Indices: 64166420--64166456 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
64166410 TACATAAATT
64166420 ACATAACTTACATTAATATG
1 ACATAACTTA-ATTAATATG
64166440 ACATAACTT-ATTAATAT
1 ACATAACTTAATTAATAT
64166457 ATTTATGGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.38
Consensus pattern (19 bp):
ACATAACTTAATTAATATG
Found at i:64171755 original size:21 final size:21
Alignment explanation
Indices: 64171731--64171774 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
64171721 GAATCTTTAG
*
64171731 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
64171752 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
64171773 TA
1 TA
64171775 ATTAGGTCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:64172711 original size:21 final size:21
Alignment explanation
Indices: 64172685--64172735 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
64172675 CTACAACTTA
* * *
64172685 AAGCAGATGCGGCAATGAGAG
1 AAGCAGAGGCAGCAACGAGAG
64172706 AAGCAGAGGCAGCAACGAGAG
1 AAGCAGAGGCAGCAACGAGAG
*
64172727 AAGCCGAGG
1 AAGCAGAGG
64172736 TTCAACGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.39, C:0.18, G:0.39, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCAGCAACGAGAG
Found at i:64172729 original size:87 final size:87
Alignment explanation
Indices: 64172619--64172802 Score: 255
Period size: 87 Copynumber: 2.1 Consensus size: 87
64172609 ACACAACTTA
* * *
64172619 AAGCGGAGGCAACATCGAGAGAAGCTAAGGTTCAA-AAAAGATATGAAGAACTCCAGCTA-CAAC
1 AAGCAGAGGCAACAACGAGAGAAGCCAAGGTTCAACAAAAG-TATGAAGAACTCCAGC-AGCAAC
*
64172682 TTAAAGCAGATGCGGCAATGAGAG
64 TTAAAGCAGATGCGGCAACGAGAG
* * * *
64172706 AAGCAGAGGCAGCAACGAGAGAAGCCGAGGTTCAACGAAAGTATGAAGAACTCCAGCAGCAGCTT
1 AAGCAGAGGCAACAACGAGAGAAGCCAAGGTTCAACAAAAGTATGAAGAACTCCAGCAGCAACTT
*
64172771 AAAGCAGATGCGGCAGCGAGAG
66 AAAGCAGATGCGGCAACGAGAG
64172793 AAGCAGAGGC
1 AAGCAGAGGC
64172803 TAAAGCGAGG
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
86 1 0.01
87 81 0.94
88 4 0.05
ACGTcount: A:0.40, C:0.19, G:0.30, T:0.11
Consensus pattern (87 bp):
AAGCAGAGGCAACAACGAGAGAAGCCAAGGTTCAACAAAAGTATGAAGAACTCCAGCAGCAACTT
AAAGCAGATGCGGCAACGAGAG
Found at i:64172809 original size:21 final size:21
Alignment explanation
Indices: 64172785--64172824 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64172775 CAGATGCGGC
64172785 AGCGAGAGAAGCAGAGGCTAA
1 AGCGAGAGAAGCAGAGGCTAA
* *
64172806 AGCGAGGGAAGTAGAGGCT
1 AGCGAGAGAAGCAGAGGCT
64172825 GCGGCGAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.42, T:0.07
Consensus pattern (21 bp):
AGCGAGAGAAGCAGAGGCTAA
Found at i:64173193 original size:43 final size:42
Alignment explanation
Indices: 64173145--64173533 Score: 487
Period size: 43 Copynumber: 9.1 Consensus size: 42
64173135 CAAAATTAGC
* *
64173145 GGCGTTTTTTGCATAAGCGCCACTAAAGACCATGGTCTATAGT
1 GGCGTTTTTTG-TTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
64173188 GGCGTTTTTT-TCCTAAGCGCCGCGAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGT--TAAGCGCCGCTAAAGACCATGGTCTATAGT
*** *
64173231 GGCGTTTTTCACCTAAGCGCCGCTAAAGACCATGGTCTGTAGT
1 GGCGTTTTT-TGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
64173274 GGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGT
1 GGCGTTT-TTTGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* ** *
64173317 GGCGTTTGTTGGTTAAGCGTTGCTAAAGACCATGGTCTGTAGT
1 GGCGTTT-TTTGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
64173360 GGCGTTTGTTGGTTAAGCACCGCTAAAGACCATGGTCTATAGT
1 GGCGTTT-TTTGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
64173403 GGCGTTTTTTGGTAAGCGCCGCTAAAGACCACGGTCTATAGT
1 GGCGTTTTTTGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
64173445 GGCGTTTTTT-TTAAGCGCCGCTAAAGACCACGGTCTATAGT
1 GGCGTTTTTTGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
** * *
64173486 GGCGTTTTTAT-TTAAGCATCGCTAAAGAACATGGTCTATAGC
1 GGCGTTTTT-TGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
64173528 GGCGTT
1 GGCGTT
64173534 GTAAAAAAAA
Statistics
Matches: 314, Mismatches: 26, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
41 39 0.12
42 74 0.24
43 199 0.63
44 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (42 bp):
GGCGTTTTTTGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
Found at i:64176031 original size:51 final size:52
Alignment explanation
Indices: 64175968--64176096 Score: 185
Period size: 52 Copynumber: 2.5 Consensus size: 52
64175958 CGGATACTCG
*
64175968 GTGGCC-TACACATAGTACCACCCTTGT-ATCCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCAT-CACATAGTACCACACTTGTGA-CCAAAGCTATCCTTCTTCACAAA
*
64176019 GTGG-CATTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCA-TCACATAGTACCACACTTGTGACCAAAGCTATCCTTCTTCACAAA
64176071 GTGGCCATCACATAGTACCACACTTG
1 GTGGCCATCACATAGTACCACACTTG
64176097 AGTCACTAGT
Statistics
Matches: 71, Mismatches: 2, Indels: 9
0.87 0.02 0.11
Matches are distributed among these distances:
50 1 0.01
51 31 0.44
52 37 0.52
53 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.26
Consensus pattern (52 bp):
GTGGCCATCACATAGTACCACACTTGTGACCAAAGCTATCCTTCTTCACAAA
Found at i:64180505 original size:51 final size:52
Alignment explanation
Indices: 64180422--64180550 Score: 181
Period size: 52 Copynumber: 2.5 Consensus size: 52
64180412 CGGATACCCG
* *
64180422 GTGGCCTACACATAGTACCAC-CTTTGTAACCAAAGCTA-CATTCTTCACAAA
1 GTGGCCTTCACAAAGTACCACAC-TTGTAACCAAAGCTATCATTCTTCACAAA
* *
64180473 GTGGCCTTCACAAAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACAAAGTACCACACTTGTAACCAAAGCTATCATTCTTCACAAA
* *
64180525 GTGGCCTTCACACAGTATCACACTTG
1 GTGGCCTTCACAAAGTACCACACTTG
64180551 AGTCACTAGT
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
51 33 0.47
52 37 0.53
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (52 bp):
GTGGCCTTCACAAAGTACCACACTTGTAACCAAAGCTATCATTCTTCACAAA
Found at i:64180931 original size:17 final size:17
Alignment explanation
Indices: 64180899--64180933 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
64180889 TTATTAAAAG
64180899 GTTAAGTTGGTAAATAA
1 GTTAAGTTGGTAAATAA
64180916 GTTAA-TTGGTATAATAA
1 GTTAAGTTGGTA-AATAA
64180933 G
1 G
64180934 ACAAAATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.37
Consensus pattern (17 bp):
GTTAAGTTGGTAAATAA
Found at i:64181939 original size:51 final size:51
Alignment explanation
Indices: 64181776--64181943 Score: 216
Period size: 52 Copynumber: 3.3 Consensus size: 51
64181766 TAGTGACTCT
* * *
64181776 AGTGTGGTACTATGTGAAGGCCACTTTGAGAA-AAGCTAGC-TTGATCACA
1 AGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCACA
* *
64181825 AGTGTGGTACTATGTAAAAGCCACTTTGTGAAGAAAGATAGCTTTGGTCACA
1 AGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCACA
* *
64181877 AGTGTGGTACTATGTGAAGGTCACTTTGTGAAGAAGGTAGCTTTGG-CTACA
1 AGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-ACA
* *
64181928 AGGGTTGTACTATGTG
1 AGTGTGGTACTATGTG
64181944 CAGGTCATCG
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
49 29 0.28
50 1 0.01
51 36 0.35
52 38 0.37
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.30
Consensus pattern (51 bp):
AGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCACA
Found at i:64181949 original size:51 final size:52
Alignment explanation
Indices: 64181779--64181950 Score: 192
Period size: 51 Copynumber: 3.4 Consensus size: 52
64181769 TGACTCTAGT
* * * * *
64181779 GTGGTACTATGTGAAGGCCACTTTGAG-A-AAAGCTAGC-TTGATCACAAGT
1 GTGGTACTATGTGAAGGTCACTTTGTGAAGAAAGATAGCTTTGGTCACAAGG
* * * *
64181828 GTGGTACTATGTAAAAGCCACTTTGTGAAGAAAGATAGCTTTGGTCACAAGT
1 GTGGTACTATGTGAAGGTCACTTTGTGAAGAAAGATAGCTTTGGTCACAAGG
*
64181880 GTGGTACTATGTGAAGGTCACTTTGTGAAG-AAGGTAGCTTTGG-CTACAAGG
1 GTGGTACTATGTGAAGGTCACTTTGTGAAGAAAGATAGCTTTGGTC-ACAAGG
* *
64181931 GTTGTACTATGTGCAGGTCA
1 GTGGTACTATGTGAAGGTCA
64181951 TCGGGTATCC
Statistics
Matches: 107, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
49 24 0.22
50 2 0.02
51 43 0.40
52 38 0.36
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.29
Consensus pattern (52 bp):
GTGGTACTATGTGAAGGTCACTTTGTGAAGAAAGATAGCTTTGGTCACAAGG
Found at i:64188346 original size:41 final size:41
Alignment explanation
Indices: 64188265--64188343 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 41
64188255 TCCCCACTCA
* * *
64188265 AAAGCAACCCCAAACTATAAGTAAATGCCTTGATTAAAAGT
1 AAAGCAACCCCAAACTATAACTAAATACCTTAATTAAAAGT
*
64188306 AAAGCAA-CCCTAACTATAACTAAATACCTTAATTAAAA
1 AAAGCAACCCCAAACTATAACTAAATACCTTAATTAAAA
64188344 AGTGAATCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
40 27 0.79
41 7 0.21
ACGTcount: A:0.49, C:0.20, G:0.08, T:0.23
Consensus pattern (41 bp):
AAAGCAACCCCAAACTATAACTAAATACCTTAATTAAAAGT
Found at i:64195006 original size:11 final size:12
Alignment explanation
Indices: 64194984--64195015 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
64194974 TTTATTTAAC
64194984 ATACACATACAA
1 ATACACATACAA
64194996 ATACA-ATACAA
1 ATACACATACAA
64195007 ATACACATA
1 ATACACATA
64195016 TTTCTGGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.59, C:0.22, G:0.00, T:0.19
Consensus pattern (12 bp):
ATACACATACAA
Found at i:64195417 original size:5 final size:5
Alignment explanation
Indices: 64195407--64195434 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
64195397 TCAAAAATGA
64195407 AAAAC AAAAC AAAAC AAAAC AAAAC AAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAA
64195435 TAATCAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:64201667 original size:14 final size:15
Alignment explanation
Indices: 64201638--64201669 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
64201628 TATTCAAACT
64201638 TTTTTTGAAAATTTA
1 TTTTTTGAAAATTTA
64201653 TTTTTTGAAAA-TTA
1 TTTTTTGAAAATTTA
64201667 TTT
1 TTT
64201670 ATTATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (15 bp):
TTTTTTGAAAATTTA
Found at i:64201687 original size:19 final size:18
Alignment explanation
Indices: 64201649--64201707 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
64201639 TTTTTGAAAA
*
64201649 TTTATTTTTTGAAAATTATT
1 TTTATTTTTT-ATAA-TATT
64201669 TATTATTTTTTATAATATT
1 T-TTATTTTTTATAATATT
*
64201688 TTAATTTTTTTATAATATT
1 TTTA-TTTTTTATAATATT
64201707 T
1 T
64201708 GTTTATTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 2 0.06
19 20 0.57
20 4 0.11
21 9 0.26
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (18 bp):
TTTATTTTTTATAATATT
Found at i:64201753 original size:83 final size:83
Alignment explanation
Indices: 64201600--64201753 Score: 195
Period size: 83 Copynumber: 1.9 Consensus size: 83
64201590 TTTTAAAATT
* *
64201600 ATATTTTAAATGTTTTATAATATCTGTTTATTCAAACTTTTTTTGAAAATTTATTTTTTGAAAAT
1 ATATTTTAAATGTTTTATAATATCTGTTTATTCAAACTTTTTTTGAAAATTTATTTTATGAAAAG
*
64201665 TATTTATTATTTTTTATA
66 CATTTATTATTTTTTATA
* * * ***
64201683 ATATTTTAATTTTTTTATAATATTTGTTTATTCAAACGTTTTTTATTTTAATTT-TTTTAT-AAA
1 ATATTTTAAATGTTTTATAATATCTGTTTATTCAAAC-TTTTTT-TGAAAATTTATTTTATGAAA
64201746 AGCATTTA
64 AGCATTTA
64201754 AAATTATAAG
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
83 43 0.72
84 11 0.18
85 6 0.10
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (83 bp):
ATATTTTAAATGTTTTATAATATCTGTTTATTCAAACTTTTTTTGAAAATTTATTTTATGAAAAG
CATTTATTATTTTTTATA
Found at i:64201896 original size:22 final size:20
Alignment explanation
Indices: 64201870--64201927 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 20
64201860 AACAAATATT
*
64201870 ATAAAACATTTAAAATATAATT
1 ATAAAA-ATTTAAAATA-AATA
*
64201892 TTAAAATATTATAAAATAAATA
1 ATAAAA-ATT-TAAAATAAATA
64201914 ATAAAAATTTAAAA
1 ATAAAAATTTAAAA
64201928 AAAAGATTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 5 0.16
21 3 0.10
22 16 0.52
23 7 0.23
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (20 bp):
ATAAAAATTTAAAATAAATA
Found at i:64201983 original size:13 final size:13
Alignment explanation
Indices: 64201967--64201992 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64201957 ATATTATAAA
64201967 AAATTTAAAATAT
1 AAATTTAAAATAT
64201980 AAATTTAAAATAT
1 AAATTTAAAATAT
64201993 TATAAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAATTTAAAATAT
Found at i:64202010 original size:22 final size:21
Alignment explanation
Indices: 64201962--64202010 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
64201952 AACCGATATT
64201962 ATAA-AAAATTTAAAATATAA
1 ATAATAAAATTTAAAATATAA
*
64201982 AT-TTAAAATATTATAAA-ATAA
1 ATAATAAAAT-TTA-AAATATAA
64202003 ATAATAAA
1 ATAATAAA
64202011 CAAATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
20 7 0.30
21 9 0.39
22 7 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
ATAATAAAATTTAAAATATAA
Found at i:64202019 original size:92 final size:92
Alignment explanation
Indices: 64201820--64202022 Score: 293
Period size: 92 Copynumber: 2.2 Consensus size: 92
64201810 CTAAAATATT
* * *
64201820 ATAAACCAAATAATAAAAAAATTTAAAAAATGTTTGAATAAACAAATATTATAAAACATTTAAAA
1 ATAAA-CAAATAA-AAAAAAATTTAAAAAACGTTTCAATAAACAAATATTATAAAAAATTTAAAA
*
64201885 TATAATTTTAAAATATTATAAAATAAATA
64 TATAAATTTAAAATATTATAAAATAAATA
* **
64201914 ATAAA-AATTTAAAAAAAAGA-TTAAAAAACGTTTCAATAAACCGATATTATAAAAAATTTAAAA
1 ATAAACAA-ATAAAAAAAA-ATTTAAAAAACGTTTCAATAAACAAATATTATAAAAAATTTAAAA
64201977 TATAAATTTAAAATATTATAAAATAAATA
64 TATAAATTTAAAATATTATAAAATAAATA
64202006 ATAAACAAATAAAAAAA
1 ATAAACAAATAAAAAAA
64202023 GGAAAATGAC
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
92 87 0.89
93 6 0.06
94 5 0.05
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (92 bp):
ATAAACAAATAAAAAAAAATTTAAAAAACGTTTCAATAAACAAATATTATAAAAAATTTAAAATA
TAAATTTAAAATATTATAAAATAAATA
Found at i:64204793 original size:27 final size:26
Alignment explanation
Indices: 64204745--64204799 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
64204735 ATGATTTAGA
64204745 AATTAAAAATATTAATAAAATAAATTT
1 AATTAAAAATATTAATAAAAT-AATTT
* *
64204772 AATTAAAATTATTTAA-ATAATAATTT
1 AATTAAAAATA-TTAATAAAATAATTT
64204798 AA
1 AA
64204800 AAATAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.28
27 14 0.56
28 4 0.16
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (26 bp):
AATTAAAAATATTAATAAAATAATTT
Found at i:64204916 original size:24 final size:26
Alignment explanation
Indices: 64204880--64204929 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 26
64204870 AATTAAAAAT
*
64204880 ATTTAACTTTTACTAGTTTAT-TATA
1 ATTTAACTTTTACTAGTATATATATA
64204905 ATTTAA-TTTTACTAGTATATATATA
1 ATTTAACTTTTACTAGTATATATATA
64204930 TATTCTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (26 bp):
ATTTAACTTTTACTAGTATATATATA
Found at i:64205642 original size:28 final size:27
Alignment explanation
Indices: 64205572--64205642 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
64205562 ATAATTGATT
* * * *
64205572 TTAAATAAAAATATATTATTTAATGAA
1 TTAAATATAAATTTAATATATAATGAA
*
64205599 TT-AATATCAAAGTTAATATATAATCGAA
1 TTAAATAT-AAATTTAATATATAAT-GAA
64205627 TTAAATATAAATTTAA
1 TTAAATATAAATTTAA
64205643 AATACATATT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
26 4 0.11
27 14 0.40
28 12 0.34
29 5 0.14
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.39
Consensus pattern (27 bp):
TTAAATATAAATTTAATATATAATGAA
Found at i:64214382 original size:7 final size:7
Alignment explanation
Indices: 64214370--64214410 Score: 75
Period size: 7 Copynumber: 6.0 Consensus size: 7
64214360 AAAAAGAGGG
64214370 ATGAAAA
1 ATGAAAA
64214377 ATGAAAA
1 ATGAAAA
64214384 ATG-AAA
1 ATGAAAA
64214390 ATGAAAA
1 ATGAAAA
64214397 ATGAAAA
1 ATGAAAA
64214404 ATGAAAA
1 ATGAAAA
64214411 GTAATGACGG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.18
7 27 0.82
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
ATGAAAA
Found at i:64214390 original size:13 final size:14
Alignment explanation
Indices: 64214370--64214410 Score: 75
Period size: 13 Copynumber: 3.0 Consensus size: 14
64214360 AAAAAGAGGG
64214370 ATGAAAAATGAAAA
1 ATGAAAAATGAAAA
64214384 ATG-AAAATGAAAA
1 ATGAAAAATGAAAA
64214397 ATGAAAAATGAAAA
1 ATGAAAAATGAAAA
64214411 GTAATGACGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 13 0.50
14 13 0.50
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
ATGAAAAATGAAAA
Found at i:64214393 original size:20 final size:20
Alignment explanation
Indices: 64214370--64214410 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
64214360 AAAAAGAGGG
64214370 ATGAAAAATGAAAAATGAAA
1 ATGAAAAATGAAAAATGAAA
64214390 ATGAAAAATGAAAAATGAAA
1 ATGAAAAATGAAAAATGAAA
64214410 A
1 A
64214411 GTAATGACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (20 bp):
ATGAAAAATGAAAAATGAAA
Found at i:64215867 original size:44 final size:43
Alignment explanation
Indices: 64215629--64216839 Score: 480
Period size: 44 Copynumber: 27.7 Consensus size: 43
64215619 GTGAAGAGTT
* *
64215629 CTAG-ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
1 CTAGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * *
64215671 CTAGTAATCCTACCTCCCTGAGATTACAGTGGAGTAGATTAAAATG
1 CTAG-AATCTTATCTCCCTGAGATTACAGTGGAGTAGATT-GAA-G
* * * * * * *
64215717 -AAGGATCTTATCTCTCTGA-AGTTA-AGTAGAGTAGATCGCAT
1 CTAGAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAG
* * * **
64215758 C-AG-GTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAG
1 CTAGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * *
64215799 AATTTCAG-ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
1 ---CT-AGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * *
64215845 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAG-CGAATTAAAATG
1 CTAG-AATCTTATCTCCCTGAGATTACAGTGGAGTAG-ATT-GAA-G
* * * * * * * * *
64215891 -AAGGATCTTATCTCTCGGA-AGTTATAGTAGAGTAGATCGCAT
1 CTAGAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAG
* * * * **
64215933 C-AG-GTCTTATCTTCCTAAGATTACAGTGGAATAGACCGAAG
1 CTAGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * * **
64215974 AATTTTAG-ATCTTATCTCCCTGAGATTACAGCGAAACAGATTGAAG
1 ----CTAGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* ** *
64216020 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATG
1 CTAG-AATCTTATCTCCCTGAGATTACAGTGGAGTAGATT-GAA-G
* * ** * * * *
64216066 -AAGGATCTTATCTCTTTGA-AGTTACAGTAGAGTAGATCGCAT
1 CTAGAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAG
* * * * * *
64216108 C-AG-GTCTTATCTTCTTGAGATTACAGTGGAATAGATCGAAAAAT
1 CTAGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTG---AAG
* * *
64216152 TTCAG-ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
1 CT-AGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * **
64216195 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAATAGACCGAAG
1 CTAG-AATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * * * *
64216239 AATTTCAG-GTCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAG
1 ---CT-AGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * * * *
64216285 AATTTTAG-ATCTTATCTCCCTAAGATTATAGCGGAGCAGATTGAAG
1 ----CTAGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * * *
64216331 CTAGTAATCCTATCTCCCTGAGATTACAGTTGAG-CGAATTAAAATG
1 CTAG-AATCTTATCTCCCTGAGATTACAGTGGAGTAG-ATT-GAA-G
* * * * * * *
64216377 -AAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTGGATTGCAT
1 CTAGAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAG
* * * * *
64216419 C-AG-GTCTTATCTCCCTGAGATTACAATGGAATAGATAGAAT
1 CTAGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * *
64216460 TTCAG-ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
1 CT-AGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * *
64216503 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAG-CGAATTAAAATG
1 CTAG-AATCTTATCTCCCTGAGATTACAGTGGAGTAG-ATT-GAA-G
* * * * * * *
64216549 -AAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTGGATTGCAT
1 CTAGAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAG
* * * *
64216591 C-AG-GTCTTATCTCCCTGAGATTACAGTGGAATAGATAGAAT
1 CTAGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * * *
64216632 TTCAG-ATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAG
1 CT-AGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * * *
64216675 CTAGTAATCCTATCTCCCTGAGATTACAGTGAAGCAGATT-AAA
1 CTAG-AATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* * * * * *
64216718 ATAAATGATCTTATCTCACCTGA-AGTTACAGTAGAGTAGATCGCAT
1 CTAGA--ATCTTATCTC-CCTGAGA-TTACAGTGGAGTAGATTGAAG
* * * **
64216764 C-AG-GTCTTATCTCCCTGAAATTACAGTGGAATAGACCGAAG
1 CTAGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
* *
64216805 AATTTCAG-ATCTTATCTTCCTGAGATTACAGTGGA
1 ---CT-AGAATCTTATCTCCCTGAGATTACAGTGGA
64216840 ATGACCGAAG
Statistics
Matches: 876, Mismatches: 212, Indels: 158
0.70 0.17 0.13
Matches are distributed among these distances:
40 15 0.02
41 146 0.17
42 42 0.05
43 99 0.11
44 332 0.38
45 42 0.05
46 193 0.22
47 5 0.01
48 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (43 bp):
CTAGAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG
Found at i:64216025 original size:175 final size:174
Alignment explanation
Indices: 64215631--64216227 Score: 1052
Period size: 175 Copynumber: 3.4 Consensus size: 174
64215621 GAAGAGTTCT
*
64215631 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTACCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
*
64215696 ACAGTGGAG-TAGATTAAAATGAAGGATCTTATCTCTCTGAAGTTAAGTAGAGTAGATCGCATCA
66 ACAGTGGAGCGA-ATTAAAATGAAGGATCTTATCTCTCTGAAGTTAAGTAGAGTAGATCGCATCA
64215760 GGTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAGAATTTC
130 GGTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAGAATTTC
64215805 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
*
64215870 ACAGTGGAGCGAATTAAAATGAAGGATCTTATCTCTCGGAAGTTATAGTAGAGTAGATCGCATCA
66 ACAGTGGAGCGAATTAAAATGAAGGATCTTATCTCTCTGAAGTTA-AGTAGAGTAGATCGCATCA
* *
64215935 GGTCTTATCTTCCTAAGATTACAGTGGAATAGACCGAAGAATTTT
130 GGTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAGAATTTC
* *
64215980 AGATCTTATCTCCCTGAGATTACAGCGAAACAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
* *
64216045 ACAGTGGAGCGGATTAAAATGAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCA
66 ACAGTGGAGCGAATTAAAATGAAGGATCTTATCTCTCTGAAGTTA-AGTAGAGTAGATCGCATCA
* * *
64216110 GGTCTTATCTTCTTGAGATTACAGTGGAATAGATCGAAAAATTTC
130 GGTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAGAATTTC
64216155 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
64216220 ACAGTGGA
66 ACAGTGGA
64216228 ATAGACCGAA
Statistics
Matches: 403, Mismatches: 18, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
174 105 0.26
175 298 0.74
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (174 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
ACAGTGGAGCGAATTAAAATGAAGGATCTTATCTCTCTGAAGTTAAGTAGAGTAGATCGCATCAG
GTCTTATCTTCCTGAGATTACAGTGGAATAGACCGAAGAATTTC
Found at i:64216275 original size:311 final size:308
Alignment explanation
Indices: 64215932--64216535 Score: 1046
Period size: 311 Copynumber: 2.0 Consensus size: 308
64215922 GTAGATCGCA
*
64215932 TCAGGTCTTATCTTCCTAAGATTACAGTGGAATAGACCGAAGAATTTTAGATCTTATCTCCCTGA
1 TCAGGTCTTATCTTCCTAAGATTACAGTGGAATAGACCGAAGAATTTTAGATCTTATCTCCCTAA
*
64215997 GATTACAGCGAAACAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAA
66 GATTACAGCGAAACAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGAATTAA
* * *
64216062 AATGAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTTCTTGAG
131 AATGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAG
*
64216127 ATTACAGTGGAATAGATCGAAAAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTG
196 ATTACAATGGAATAGAT---AAAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTG
64216192 AAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATT
258 AAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATT
* *
64216243 TCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAGAATTTTAGATCTTATCTCCCTAA
1 TCAGGTCTTATCTTCCTAAGATTACAGTGGAATAGACCGAAGAATTTTAGATCTTATCTCCCTAA
* * * *
64216308 GATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTTGAGCGAATTAA
66 GATTACAGCGAAACAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGAATTAA
* *
64216373 AATGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATTGCATCAGGTCTTATCTCCCTGAG
131 AATGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAG
*
64216438 ATTACAATGGAATAGATAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
196 ATTACAATGGAATAGATAAAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
64216503 CTAGTAATCCTATCTCCCTGAGATTACAGTGGA
261 CTAGTAATCCTATCTCCCTGAGATTACAGTGGA
64216536 GCGAATTAAA
Statistics
Matches: 278, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
308 80 0.29
311 198 0.71
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (308 bp):
TCAGGTCTTATCTTCCTAAGATTACAGTGGAATAGACCGAAGAATTTTAGATCTTATCTCCCTAA
GATTACAGCGAAACAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGAATTAA
AATGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAG
ATTACAATGGAATAGATAAAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
CTAGTAATCCTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATT
Found at i:64216280 original size:136 final size:136
Alignment explanation
Indices: 64216107--64216360 Score: 463
Period size: 136 Copynumber: 1.9 Consensus size: 136
64216097 GTAGATCGCA
* *
64216107 TCAGGTCTTATCTTCTTGAGATTACAGTGGAATAGATCGAAAAATTTCAGATCTTATCTCCCTGA
1 TCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAAAATTTCAGATCTTATCTCCCTAA
64216172 GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAATAGACCGA
66 GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAATAGACCGA
64216237 AGAATT
131 AGAATT
* *
64216243 TCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAGAATTTTAGATCTTATCTCCCTAA
1 TCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAAAATTTCAGATCTTATCTCCCTAA
*
64216308 GATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
66 GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGT
64216361 TGAGCGAATT
Statistics
Matches: 113, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 113 1.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (136 bp):
TCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAAAATTTCAGATCTTATCTCCCTAA
GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAATAGACCGA
AGAATT
Found at i:64216498 original size:172 final size:172
Alignment explanation
Indices: 64216243--64216835 Score: 956
Period size: 172 Copynumber: 3.4 Consensus size: 172
64216233 CCGAAGAATT
* * *
64216243 TCAGGTCTTATCTTCCTGAGATTACAGTGGAATAGATCGAAGAATTTTAGATCTTATCTCCCTAA
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGAT---AGAATTTCAGATCTTATCTCCCTGA
*
64216308 GATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTTGAGCGAATTAA
63 GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTTGAGCGAATTAA
64216373 AATGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATTGCA
128 AATGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATTGCA
*
64216418 TCAGGTCTTATCTCCCTGAGATTACAATGGAATAGATAGAATTTCAGATCTTATCTCCCTGAGAT
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGATAGAATTTCAGATCTTATCTCCCTGAGAT
*
64216483 TACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGAATTAAAAT
66 TACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTTGAGCGAATTAAAAT
64216548 GAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATTGCA
131 GAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATTGCA
*
64216590 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGATAGAATTTCAGATCTTATCTCCTTGAGAT
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGATAGAATTTCAGATCTTATCTCCCTGAGAT
64216655 TACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG-TGAAGC-AGATTAAA
66 TACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTTG-AGCGA-ATTAAA
* * * * *
64216718 ATAAATGATCTTATCTCACCTGAAGTTACAGTAGAGTAGATCGCA
129 ATGAAGGATCTTATCTC-TCTGAAGTTACAGTAGAGTGGATTGCA
* * *
64216763 TCAGGTCTTATCTCCCTGAAATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTTCCTGA
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGA---TAGAATTTCAGATCTTATCTCCCTGA
64216828 GATTACAG
63 GATTACAG
64216836 TGGAATGACC
Statistics
Matches: 394, Mismatches: 18, Indels: 11
0.93 0.04 0.03
Matches are distributed among these distances:
171 2 0.01
172 267 0.68
173 59 0.15
175 35 0.09
176 31 0.08
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30
Consensus pattern (172 bp):
TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGATAGAATTTCAGATCTTATCTCCCTGAGAT
TACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTTGAGCGAATTAAAAT
GAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATTGCA
Found at i:64217006 original size:50 final size:49
Alignment explanation
Indices: 64216933--64217315 Score: 235
Period size: 50 Copynumber: 7.7 Consensus size: 49
64216923 GCAGTGGAGC
* * *
64216933 AGATTAAAGCCACATCGGTGAATCTTGTTTCTCCAACATTGCAGTCAAAA
1 AGATTAAAGCCACATCGGCGAATCTTGCTTC-CCGACATTGCAGTCAAAA
* * * * ** ** **
64216983 AGATTAAAGCCACACCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAGC
1 AGATTAAAGCCACATCGGCGAATCTTGCTTCCC-GACATTGCAGTCAAAA
* * *
64217033 AGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGCGAATCTTGCTT-CCCGACATTGCAGTCAAAA
* * * * ** * ** **
64217083 AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTACAGTGGAGC
1 AGATTAAAGCCACATCGGCGAATCTTGCTTCCC-GACATTGCAGTCAAAA
* * * *
64217133 AGATTAAAGCCACATTGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGCGAATCTTGCTT-CCCGACATTGCAGTCAAAA
* * * * * ** ** *
64217183 AGATTAAAGCCCCAGCGGCGAATCCTACTTCCCTAGCGGTGCAGTGGAAC
1 AGATTAAAGCCACATCGGCGAATCTTGCTTCCCGA-CATTGCAGTCAAAA
* * ** * * *
64217233 AGATTGAAGCCACATTGGTAAATCTCGCTTCCCCGACATTACAGTTAAAA
1 AGATTAAAGCCACATCGGCGAATCTTGCTT-CCCGACATTGCAGTCAAAA
* * * *
64217283 AGATTAAAGCCCCAGCGGCGAATCCTACTTCCC
1 AGATTAAAGCCACATCGGCGAATCTTGCTTCCC
64217316 TGGCGGTGCA
Statistics
Matches: 237, Mismatches: 90, Indels: 13
0.70 0.26 0.04
Matches are distributed among these distances:
49 12 0.05
50 215 0.91
51 10 0.04
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (49 bp):
AGATTAAAGCCACATCGGCGAATCTTGCTTCCCGACATTGCAGTCAAAA
Found at i:64217077 original size:100 final size:100
Alignment explanation
Indices: 64216904--64217391 Score: 690
Period size: 100 Copynumber: 4.9 Consensus size: 100
64216894 AGAATTACAG
* ** * * * *
64216904 ATCCTACTTCACTGATGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGTTTCTCCAA
1 ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
* *
64216969 CATTGCAGTCAAAAAGATTAAAGCCACACCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGA
64217004 ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
1 ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
64217069 CATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGA
* *
64217104 ATCCTACTTCCCTGGCGGTACAGTGGAGCAGATTAAAGCCACATTGGTGAATCTCGCTTCCCCGA
1 ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
*
64217169 CATTGCAGTTAAAAAGATTAAAGCCCCAGCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGA
* * * * *
64217204 ATCCTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCCACATTGGTAAATCTCGCTTCCCCGA
1 ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
* *
64217269 CATTACAGTTAAAAAGATTAAAGCCCCAGCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGA
* * * * * * ** *
64217304 ATCCTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCTCGA
1 ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
**
64217369 CATCACAGTTAAACAA-ATTAAAG
66 CATTGCAGTTAAA-AAGATTAAAG
64217392 TTATGGGTTA
Statistics
Matches: 358, Mismatches: 29, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
100 356 0.99
101 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.23
Consensus pattern (100 bp):
ATCCTACTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
CATTGCAGTTAAAAAGATTAAAGCCACAGCGGCGA
Found at i:64217337 original size:50 final size:50
Alignment explanation
Indices: 64216983--64217364 Score: 293
Period size: 50 Copynumber: 7.6 Consensus size: 50
64216973 GCAGTCAAAA
* *
64216983 AGATTAAAGCCACACCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAGC
1 AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAAC
* * * * * ** ** *
64217033 AGATTAAAGCCACATCGGTGAAT-CTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCCT-ACTTCCCTGGCGGTGCAGTGGAAC
* *
64217083 AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTACAGTGGAGC
1 AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAAC
** * * * * ** ** *
64217133 AGATTAAAGCCACATTGGTGAAT-CTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCCT-ACTTCCCTGGCGGTGCAGTGGAAC
* *
64217183 AGATTAAAGCCCCAGCGGCGAATCCTACTTCCCTAGCGGTGCAGTGGAAC
1 AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAAC
* ** ** * * * ** * ** *
64217233 AGATTGAAGCCACATTGGTAAAT-CTCGCTTCCCCGACATTACAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCCT-ACTTCCCTGGCGGTGCAGTGGAAC
*
64217283 AGATTAAAGCCCCAGCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAAC
1 AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAAC
* * * * *
64217333 AGATTGAAGCTACAACAGCGAATCTTACTTCC
1 AGATTAAAGCCACAGCGGCGAATCCTACTTCC
64217365 TCGACATCAC
Statistics
Matches: 240, Mismatches: 86, Indels: 12
0.71 0.25 0.04
Matches are distributed among these distances:
49 6 0.03
50 228 0.95
51 6 0.03
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (50 bp):
AGATTAAAGCCACAGCGGCGAATCCTACTTCCCTGGCGGTGCAGTGGAAC
Found at i:64217978 original size:17 final size:18
Alignment explanation
Indices: 64217956--64217996 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
64217946 AAACAGCAAG
*
64217956 AGAAAAGCAG-AGAAAAA
1 AGAAAAACAGAAGAAAAA
64217973 AGAAAAACAGAAAGAAAAA
1 AGAAAAACAG-AAGAAAAA
64217992 AGAAA
1 AGAAA
64217997 TTTGTATTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
19 12 0.57
ACGTcount: A:0.76, C:0.05, G:0.20, T:0.00
Consensus pattern (18 bp):
AGAAAAACAGAAGAAAAA
Found at i:64219153 original size:27 final size:26
Alignment explanation
Indices: 64219123--64219184 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
64219113 ATAAGACTAA
* *
64219123 TTATTTTAACTTACTTTATATATTATT
1 TTATTTTAACTTACTTTACATATTA-C
* *
64219150 TTATTTTAAGTTATTTTACATATTAC
1 TTATTTTAACTTACTTTACATATTAC
64219176 TTATTTTAA
1 TTATTTTAA
64219185 AATTAACCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 9 0.29
27 22 0.71
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (26 bp):
TTATTTTAACTTACTTTACATATTAC
Found at i:64220637 original size:21 final size:21
Alignment explanation
Indices: 64220613--64220676 Score: 58
Period size: 21 Copynumber: 3.1 Consensus size: 21
64220603 CTTAGTTTCA
* *
64220613 TTGTTGTTTTGAATCGATTGT
1 TTGTTATTTTAAATCGATTGT
* *
64220634 TTGTTATTTTAAATTGATTCT
1 TTGTTATTTTAAATCGATTGT
* **
64220655 CTG-CCTTTTAAATCGATTGT
1 TTGTTATTTTAAATCGATTGT
64220675 TT
1 TT
64220677 ACTATTTTGA
Statistics
Matches: 33, Mismatches: 10, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
20 14 0.42
21 19 0.58
ACGTcount: A:0.19, C:0.09, G:0.16, T:0.56
Consensus pattern (21 bp):
TTGTTATTTTAAATCGATTGT
Found at i:64237034 original size:14 final size:14
Alignment explanation
Indices: 64237015--64237041 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64237005 GGCTCACAAA
64237015 AAAATAATAAAACC
1 AAAATAATAAAACC
64237029 AAAATAATAAAAC
1 AAAATAATAAAAC
64237042 AAAGTCCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.15
Consensus pattern (14 bp):
AAAATAATAAAACC
Found at i:64237170 original size:19 final size:19
Alignment explanation
Indices: 64237146--64237282 Score: 166
Period size: 19 Copynumber: 7.0 Consensus size: 19
64237136 AATCTTCAAG
*
64237146 GATATGCAATCTTAGACAT
1 GATATGCAATCTTAGATAT
*
64237165 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
64237184 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
64237203 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
64237222 GATGTGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
64237241 GATATTCAATATTCGAAGATAT
1 GATATGCAATCTT---AGATAT
* *
64237263 GATTTTGTAATCTTAGATAT
1 GA-TATGCAATCTTAGATAT
64237283 TTAATTTGTA
Statistics
Matches: 101, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
19 80 0.79
20 6 0.06
22 8 0.08
23 7 0.07
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:64237491 original size:21 final size:20
Alignment explanation
Indices: 64237453--64237492 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
64237443 CTTACTGTTT
64237453 TTTTTTATCTTTTTCGATTA
1 TTTTTTATCTTTTTCGATTA
64237473 TTTTTTA-CTTATTTACGATT
1 TTTTTTATCTT-TTT-CGATT
64237493 TTAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.17
20 10 0.56
21 5 0.28
ACGTcount: A:0.17, C:0.10, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTTTATCTTTTTCGATTA
Found at i:64237715 original size:3 final size:3
Alignment explanation
Indices: 64237707--64237775 Score: 52
Period size: 3 Copynumber: 22.7 Consensus size: 3
64237697 ACTAATTAAT
* * * *
64237707 TTA TTA TTA TTA TTA TTTA TTA ATC CTA TTA TTA TT- TGTA CTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
*
64237753 TTG TTA TTA TTA TT- TTCA TTA TT
1 TTA TTA TTA TTA TTA TT-A TTA TT
64237776 TCTTCTTATC
Statistics
Matches: 52, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
2 3 0.06
3 44 0.85
4 5 0.10
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:64237722 original size:12 final size:11
Alignment explanation
Indices: 64237701--64237775 Score: 60
Period size: 12 Copynumber: 6.3 Consensus size: 11
64237691 GTTTTTACTA
*
64237701 ATTAATTTATT
1 ATTATTTTATT
64237712 ATTATTATTATTT
1 ATTATT-TTA-TT
**
64237725 ATTAATCCTATT
1 ATT-ATTTTATT
*
64237737 ATTATTTGTACT
1 ATTATTT-TATT
64237749 ATTATTGTTATT
1 ATTATT-TTATT
64237761 ATTATTTTCATT
1 ATTATTTT-ATT
64237773 ATT
1 ATT
64237776 TCTTCTTATC
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
11 9 0.18
12 32 0.63
13 8 0.16
14 2 0.04
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:64248673 original size:384 final size:383
Alignment explanation
Indices: 64247958--64248711 Score: 1105
Period size: 384 Copynumber: 2.0 Consensus size: 383
64247948 AAACAAAGTT
*
64247958 TAAACCAAGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCTACATAGGTATGTTCAATATTCT
1 TAAACCAAGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCCACATAGGTATGTTCAATATTCT
* * * *
64248023 TTTTTCTAATTTTTAAAATATATTTGGGGAACCGTATCCTCGTATCCATTTTTCAATGTGTTGGA
66 ATTTTCTAATTTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTTGGA
** * * * *
64248088 TATGGGTGTTGGGCCCAACACACTTCAAAGAAACTGAAAAGTCTGAGCAACATAGCAAACTACAA
131 TATGGGTGCAGGACACAACACACTTCAAAGAAAATGAAAACTCTGAGCAACATAGCAAACTACAA
* * *
64248153 CACCAGTTATGACATCACATAAACGAAGTTGAATCTAAAACGGCACCATTGACTTCTCATGGAAC
196 CACCAGTTATGACATCACATAAACGAAGTTGAATCTAAAACAGCAACATTGACTTCTCATGAAAC
* * *
64248218 ATAGGAGAAAAAGAATAGTGAAAGAGAAAGTACATAATTAATCAAATAATTAGCAATTACATATC
261 ATAAGAGAAAAAGAATAGT-AAAGAGAAAGGACATAATTAATAAAATAATTAGCAATTACATATC
*
64248283 AGTTTCTTCTTTTCTTTGTACTGTGAAAAGCCCATGCAGACAAAGCTTATATCCACATC
325 AGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGCTTATATCCACATC
*
64248342 TAAACCAGGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCCACATAGGTATGTTC-A-A-T-T
1 TAAACCAAGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCCACATAGGTATGTTCAATATTCT
* * *
64248403 ATTTTCTAAATTTTT-AAATATATTTGGGGAACCATATGCTTGTATCCATGTCTGAATGTGTTGG
66 ATTTTCT-AATTTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTTGG
64248467 ATATGGGTGCAGGACAC-A-ACACTTCAAAGAAAATGAAAACT-TGGAGCAACATAGCAAACTAC
130 ATATGGGTGCAGGACACAACACACTTCAAAGAAAATGAAAACTCT-GAGCAACATAGCAAACTAC
*
64248529 AACACCAGTTATGACATCACATAAATGAAGTTGAAATCTAAAACAGCAACATTGACTTCTCATGA
194 AACACCAGTTATGACATCACATAAACGAAGTTG-AATCTAAAACAGCAACATTGACTTCTCATGA
*
64248594 AACATAAGAGAACAAA-AATAGT-AAGAGAAAGGATATAATTTTAATAAAATAATTAGCTATCAT
258 AACATAAGAGAA-AAAGAATAGTAAAGAGAAAGGACATAA--TTAATAAAATAATTAGC-A--A-
*
64248657 TTTACATATTAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAG
316 -TTACATATCAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAG
64248712 TAGAAAGCTT
Statistics
Matches: 334, Mismatches: 25, Indels: 22
0.88 0.07 0.06
Matches are distributed among these distances:
377 15 0.04
378 72 0.22
379 62 0.19
380 67 0.20
381 8 0.02
382 2 0.01
383 1 0.00
384 107 0.32
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (383 bp):
TAAACCAAGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCCACATAGGTATGTTCAATATTCT
ATTTTCTAATTTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTTGGA
TATGGGTGCAGGACACAACACACTTCAAAGAAAATGAAAACTCTGAGCAACATAGCAAACTACAA
CACCAGTTATGACATCACATAAACGAAGTTGAATCTAAAACAGCAACATTGACTTCTCATGAAAC
ATAAGAGAAAAAGAATAGTAAAGAGAAAGGACATAATTAATAAAATAATTAGCAATTACATATCA
GTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGCTTATATCCACATC
Found at i:64251197 original size:24 final size:24
Alignment explanation
Indices: 64251165--64251218 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
64251155 CAACATACTG
*
64251165 TATCCAAAAGAAAGGTCACAAGTC
1 TATCCAAAAGAAAGGTCACAAGAC
64251189 TATCCAAAAGAAAGGTCACAAGAC
1 TATCCAAAAGAAAGGTCACAAGAC
64251213 TATCCA
1 TATCCA
64251219 CAGTATTGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.46, C:0.22, G:0.15, T:0.17
Consensus pattern (24 bp):
TATCCAAAAGAAAGGTCACAAGAC
Found at i:64251570 original size:62 final size:62
Alignment explanation
Indices: 64251449--64251573 Score: 180
Period size: 62 Copynumber: 2.0 Consensus size: 62
64251439 ATATTATTGT
* * ** *
64251449 ACTTTACTTTATTAAAGTATGAGTGAGTTATGGTTTATTAGATGAATCATCGTCCTTTATAA
1 ACTTTACTTTATTAAAGTATGAGTGAGTCATAGTTTACGAGATGAATCATCATCCTTTATAA
*
64251511 ACTTTACTTTATTAAAGTATGAGTGAGTCATAGTTT-CGAGATGAGTCATCATCCTTTTATAA
1 ACTTTACTTTATTAAAGTATGAGTGAGTCATAGTTTACGAGATGAATCATCATCC-TTTATAA
64251573 A
1 A
64251574 TCATTGAACT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
61 14 0.25
62 42 0.75
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (62 bp):
ACTTTACTTTATTAAAGTATGAGTGAGTCATAGTTTACGAGATGAATCATCATCCTTTATAA
Found at i:64252216 original size:286 final size:286
Alignment explanation
Indices: 64251704--64252276 Score: 1110
Period size: 286 Copynumber: 2.0 Consensus size: 286
64251694 CTCTCAGATG
64251704 TAAGATATCGAGTTCTGAAAATAAAAATATTAGTGTGATTTTATAAAATAGCTTGCTAAAACTCT
1 TAAGATATCGAGTTCTGAAAATAAAAATATTAGTGTGATTTTATAAAATAGCTTGCTAAAACTCT
*
64251769 CTGTTCTCTTCCTTCTTGATTATGGTATATTAGTAAAAGAAAATCTCTCGTGAGTTTAGAAGTAT
66 CTGTTCTCTTCCTTCTTGATTATGGTATATTAGTAAAAGAAAATCTCCCGTGAGTTTAGAAGTAT
64251834 GCACTGTGCTTGCCATATAATGGATCCTGCACATCAGAAACTAAGCTTAGACCAGGTATACTAAA
131 GCACTGTGCTTGCCATATAATGGATCCTGCACATCAGAAACTAAGCTTAGACCAGGTATACTAAA
64251899 CTCAGATGAGTTTGAAGAAGTAGTCTGAATTAATAATATTAACAGCTAAAAGGCAGTGTCTGTTT
196 CTCAGATGAGTTTGAAGAAGTAGTCTGAATTAATAATATTAACAGCTAAAAGGCAGTGTCTGTTT
64251964 AAGTGGCCAAGAGGAGAAGGCCTTGT
261 AAGTGGCCAAGAGGAGAAGGCCTTGT
*
64251990 TAAGATATCGAGTTCTGAAAATAAAAATATTAGTGTGATTTTATAAAATGGCTTGCTAAAACTCT
1 TAAGATATCGAGTTCTGAAAATAAAAATATTAGTGTGATTTTATAAAATAGCTTGCTAAAACTCT
64252055 CTGTTCTCTTCCTTCTTGATTATGGTATATTAGTAAAAGAAAATCTCCCGTGAGTTTAGAAGTAT
66 CTGTTCTCTTCCTTCTTGATTATGGTATATTAGTAAAAGAAAATCTCCCGTGAGTTTAGAAGTAT
*
64252120 GCACTGTGCTTGCCATATAATGGATCCTGCACATCAGAAACTAAGTTTAGACCAGGTATACTAAA
131 GCACTGTGCTTGCCATATAATGGATCCTGCACATCAGAAACTAAGCTTAGACCAGGTATACTAAA
*
64252185 CTCAGATGAGTTTGAAGAAGTAGTCTGAATTAATGATATTAACAGCTAAAAGGCAGTGTCTGTTT
196 CTCAGATGAGTTTGAAGAAGTAGTCTGAATTAATAATATTAACAGCTAAAAGGCAGTGTCTGTTT
64252250 AAGTGGCCAAGAGGAGAAGGCCTTGT
261 AAGTGGCCAAGAGGAGAAGGCCTTGT
64252276 T
1 T
64252277 TTGGCATAGC
Statistics
Matches: 283, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
286 283 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (286 bp):
TAAGATATCGAGTTCTGAAAATAAAAATATTAGTGTGATTTTATAAAATAGCTTGCTAAAACTCT
CTGTTCTCTTCCTTCTTGATTATGGTATATTAGTAAAAGAAAATCTCCCGTGAGTTTAGAAGTAT
GCACTGTGCTTGCCATATAATGGATCCTGCACATCAGAAACTAAGCTTAGACCAGGTATACTAAA
CTCAGATGAGTTTGAAGAAGTAGTCTGAATTAATAATATTAACAGCTAAAAGGCAGTGTCTGTTT
AAGTGGCCAAGAGGAGAAGGCCTTGT
Found at i:64252577 original size:17 final size:17
Alignment explanation
Indices: 64252552--64252586 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
64252542 CACGTCATAT
64252552 TTACACTTTCATTTTGG
1 TTACACTTTCATTTTGG
*
64252569 TTACGCTTTCATTTTGG
1 TTACACTTTCATTTTGG
64252586 T
1 T
64252587 CACCCCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.17, G:0.14, T:0.54
Consensus pattern (17 bp):
TTACACTTTCATTTTGG
Found at i:64253503 original size:19 final size:18
Alignment explanation
Indices: 64253464--64253504 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
64253454 TTCGATGTAC
*
64253464 TATTTTTAAATTTATTGA
1 TATTTTTAAATTTATTCA
*
64253482 TATTTTTAAATATTTTTCA
1 TATTTTTAAAT-TTATTCA
64253501 TATT
1 TATT
64253505 CAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TATTTTTAAATTTATTCA
Found at i:64256826 original size:19 final size:19
Alignment explanation
Indices: 64256802--64256842 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
64256792 TATTTTAAAG
64256802 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
64256821 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
64256840 TTA
1 TTA
64256843 GAATAAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.44
Consensus pattern (19 bp):
TTATTTAGGTAGATAAATC
Found at i:64268387 original size:7 final size:7
Alignment explanation
Indices: 64268377--64268406 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
64268367 TTTAAATGTC
64268377 TTTTATT
1 TTTTATT
64268384 TTTTATT
1 TTTTATT
64268391 TTATTATT
1 TT-TTATT
64268399 TTTTATT
1 TTTTATT
64268406 T
1 T
64268407 GGGCAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTATT
Found at i:64278142 original size:107 final size:109
Alignment explanation
Indices: 64277996--64278229 Score: 323
Period size: 109 Copynumber: 2.2 Consensus size: 109
64277986 TTCCTTTTGG
* * *
64277996 CATATTCTCAACATAAAATGCTCATTTATATTTACATTTACTTTTCCTA-TA-ATATATTTGTGG
1 CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
** * *
64278059 AAAGTAATGGCATTTGGTCATTGAAATTAGTGGCAAATAGTGTT
66 AAAGTAACCGCATTTGGTCATTCAAATTAGTGGCAAATAATGTT
64278103 CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
1 CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
* * * * *
64278168 AAGGTAGCCGCATTTGGTGATTCAACTTAGTGGTAAATAATGTT
66 AAAGTAACCGCATTTGGTCATTCAAATTAGTGGCAAATAATGTT
64278212 CATAGTT-TTAAAA-AAAAT
1 CATA-TTCTTAAAATAAAAT
64278230 AATATTATTA
Statistics
Matches: 112, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
107 46 0.41
108 7 0.06
109 57 0.51
110 2 0.02
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (109 bp):
CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
AAAGTAACCGCATTTGGTCATTCAAATTAGTGGCAAATAATGTT
Found at i:64285143 original size:3 final size:3
Alignment explanation
Indices: 64285135--64285169 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
64285125 CAAAATTTAA
64285135 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
64285170 ACATACACTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:64289890 original size:29 final size:30
Alignment explanation
Indices: 64289850--64289908 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
64289840 TCCCATTAAG
*
64289850 TTTTAGGAG-TTTAATTGAA-ATTTTAAAAA
1 TTTTAGGAGTTTTAA-TGAATATTCTAAAAA
64289879 TTTTAAGG-GTTTTAATGAATATTCTAAAAA
1 TTTT-AGGAGTTTTAATGAATATTCTAAAAA
64289909 AATTTGACGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.44
Consensus pattern (30 bp):
TTTTAGGAGTTTTAATGAATATTCTAAAAA
Found at i:64290800 original size:19 final size:19
Alignment explanation
Indices: 64290776--64290813 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
64290766 TTCCCTTTTA
64290776 CTAAAAAATAAAATTAATT
1 CTAAAAAATAAAATTAATT
*
64290795 CTAAAAAATATAATTAATT
1 CTAAAAAATAAAATTAATT
64290814 TTTTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
CTAAAAAATAAAATTAATT
Found at i:64290943 original size:30 final size:30
Alignment explanation
Indices: 64290909--64290978 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 30
64290899 AGGTACAACC
* * *
64290909 AAAATAAAAACTTATTAAAGTTAGGTGACT
1 AAAATGAAAACTTATTAAAGTTAAGTAACT
64290939 AAAATGAAAACTTATTAAAGTTAAGTAACT
1 AAAATGAAAACTTATTAAAGTTAAGTAACT
64290969 AAAATGAAAA
1 AAAATGAAAA
64290979 TTGTTGTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.56, C:0.06, G:0.11, T:0.27
Consensus pattern (30 bp):
AAAATGAAAACTTATTAAAGTTAAGTAACT
Found at i:64292069 original size:42 final size:40
Alignment explanation
Indices: 64292007--64292131 Score: 126
Period size: 42 Copynumber: 3.1 Consensus size: 40
64291997 CCTCCCCCTC
* *
64292007 ATTATCGTCCTGAGCAACACTTCGGTCACGGTTCCCTTGAG
1 ATTATC-TCTTGAGCAACACTTCGATCACGGTTCCCTTGAG
* * *
64292048 AGTTATCATCTTGAGTAACACTTTGATCGCGGTTCCCTTGAG
1 A-TTATC-TCTTGAGCAACACTTCGATCACGGTTCCCTTGAG
* * * * *
64292090 AAT-TCTCTGGAGCAACACCTCGCTCACGGTTCCCTCGAG
1 ATTATCTCTTGAGCAACACTTCGATCACGGTTCCCTTGAG
64292129 ATT
1 ATT
64292132 TTCGGAAATA
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
39 29 0.43
40 2 0.03
41 2 0.03
42 35 0.51
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
ATTATCTCTTGAGCAACACTTCGATCACGGTTCCCTTGAG
Found at i:64292120 original size:39 final size:42
Alignment explanation
Indices: 64292018--64292129 Score: 122
Period size: 39 Copynumber: 2.7 Consensus size: 42
64292008 TTATCGTCCT
* * *
64292018 GAGCAACACTTCGGTCACGGTTCCCTTGAGAGTTATCATCTT
1 GAGCAACACTTCGATCACGGTTCCCTTGAGAGATATCATCTG
* * *
64292060 GAGTAACACTTTGATCGCGGTTCCCTTGAGA-AT-TC-TCTG
1 GAGCAACACTTCGATCACGGTTCCCTTGAGAGATATCATCTG
* * *
64292099 GAGCAACACCTCGCTCACGGTTCCCTCGAGA
1 GAGCAACACTTCGATCACGGTTCCCTTGAGA
64292130 TTTTCGGAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
39 28 0.48
40 2 0.03
41 1 0.02
42 27 0.47
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (42 bp):
GAGCAACACTTCGATCACGGTTCCCTTGAGAGATATCATCTG
Found at i:64292458 original size:22 final size:22
Alignment explanation
Indices: 64292430--64292476 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
64292420 ACACCATCAT
64292430 TCATAGGTAACTCATTCCAAAA
1 TCATAGGTAACTCATTCCAAAA
64292452 TCATAGGTAACTCATTCCAAAA
1 TCATAGGTAACTCATTCCAAAA
64292474 TCA
1 TCA
64292477 AATTCAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (22 bp):
TCATAGGTAACTCATTCCAAAA
Found at i:64294326 original size:36 final size:36
Alignment explanation
Indices: 64294274--64294472 Score: 131
Period size: 36 Copynumber: 5.6 Consensus size: 36
64294264 TGAACATTCG
*
64294274 GGTGACTTTTGC-TGGTCCCATGAATTATTCATTGTA
1 GGTGACTTTT-CTTGGTCCCAAGAATTATTCATTGTA
*
64294310 GGTGACTTTTCTTGGTCCCAAGAACTA-T--TTGCT-
1 GGTGACTTTTCTTGGTCCCAAGAATTATTCATTG-TA
* * * ****
64294343 GGTGGCTTTTGTTGATCCCAAGAATTATTTGCCGTA
1 GGTGACTTTTCTTGGTCCCAAGAATTATTCATTGTA
* * * * * ** *
64294379 GATGATTTTTGC-CGATCCCAAGAACTATTTGTTGCA
1 GGTGACTTTT-CTTGGTCCCAAGAATTATTCATTGTA
* * *
64294415 GGTGACTTTTGTTGGTCCCAAGCATTATTCATTGTC
1 GGTGACTTTTCTTGGTCCCAAGAATTATTCATTGTA
* *
64294451 TGTGACTTTTGTTGGTCCCAAG
1 GGTGACTTTTCTTGGTCCCAAG
64294473 CACTATTCTT
Statistics
Matches: 126, Mismatches: 29, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
33 26 0.21
34 2 0.02
35 3 0.02
36 95 0.75
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (36 bp):
GGTGACTTTTCTTGGTCCCAAGAATTATTCATTGTA
Found at i:64295228 original size:153 final size:153
Alignment explanation
Indices: 64295045--64295334 Score: 463
Period size: 153 Copynumber: 1.9 Consensus size: 153
64295035 TTTTGGAGAG
* * * *
64295045 ACATCTTGTGATTTAGATTTGCTCATCCCCCAATCAGACCACTCGCTTTGCTTCTTTGAACCGGA
1 ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGAACACTCACTTTGCTTCTTCGAACCGGA
* * *
64295110 TGCAGCTGCTGCAAAATTGTCACCATCCTCTGCATTTTTATGCCATGCAGACAAGGCATCCCAAC
66 TGCAGCAGCTGCAAAATTGTCACCATCCTCTGCATTTTTATGCCATCCAGACAAAGCATCCCAAC
64295175 CAACATCCACTTTTGGAGAGACA
131 CAACATCCACTTTTGGAGAGACA
* * * *
64295198 ACATCTTGTGATTTAGATTTGCTCGCCCCCCAATCAGAACACTCATTTTGCTTCTTCGAACTGGT
1 ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGAACACTCACTTTGCTTCTTCGAACCGGA
* *
64295263 TGCAGCAGCTGCAAATTTGTCACCATCCTCTGCATTTTTATTCCATCCAGACAAAGCATCCCAAC
66 TGCAGCAGCTGCAAAATTGTCACCATCCTCTGCATTTTTATGCCATCCAGACAAAGCATCCCAAC
64295328 CAACATC
131 CAACATC
64295335 TTGTGAGTTA
Statistics
Matches: 124, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
153 124 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (153 bp):
ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGAACACTCACTTTGCTTCTTCGAACCGGA
TGCAGCAGCTGCAAAATTGTCACCATCCTCTGCATTTTTATGCCATCCAGACAAAGCATCCCAAC
CAACATCCACTTTTGGAGAGACA
Found at i:64295378 original size:132 final size:129
Alignment explanation
Indices: 64295196--64295464 Score: 394
Period size: 132 Copynumber: 2.1 Consensus size: 129
64295186 TTTGGAGAGA
* * * *
64295196 CAACATCTTGTGATTTAGATTTGCTCGCCCCCCAATCAGAACACTCATTTTGCTTCTTCGAACTG
1 CAACATCTTGTGAGTTAGATTTGCTCGCACCCCAACCAGAACACTCATTTTGCTTCTCCGAACTG
* * * *
64295261 GTTGCAGCAGCTGCAAATTTGTCACCATCCTCTGCATTTTTATTCCATCCAGACAAAGCATCCCA
66 GTCGCAGCAGCAGCAAATTTGTCAACATCCTCAGCATTTTTATTCCATCCAG---AAGCATCCCA
64295326 AC
128 AC
* *
64295328 CAACATCTTGTGAGTTAGATTTGCTTGCACCCCAACCAGACCACTCATTTTGCTTCTCCGAACTG
1 CAACATCTTGTGAGTTAGATTTGCTCGCACCCCAACCAGAACACTCATTTTGCTTCTCCGAACTG
* * *
64295393 GTCGTAGCTGCAGCAAATTTGTCAACATCCTCAGCATTTTTATTCCATCCAGATGCATCCCAAC
66 GTCGCAGCAGCAGCAAATTTGTCAACATCCTCAGCATTTTTATTCCATCCAGAAGCATCCCAAC
64295457 CAACATCT
1 CAACATCT
64295465 GACACCTTCT
Statistics
Matches: 124, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
129 19 0.15
132 105 0.85
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.30
Consensus pattern (129 bp):
CAACATCTTGTGAGTTAGATTTGCTCGCACCCCAACCAGAACACTCATTTTGCTTCTCCGAACTG
GTCGCAGCAGCAGCAAATTTGTCAACATCCTCAGCATTTTTATTCCATCCAGAAGCATCCCAAC
Found at i:64307474 original size:18 final size:19
Alignment explanation
Indices: 64307451--64307486 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
64307441 TATTTAATAA
64307451 TATTTTTATC-TCAAAAAG
1 TATTTTTATCTTCAAAAAG
*
64307469 TATTTTTTTCTTCAAAAA
1 TATTTTTATCTTCAAAAA
64307487 AATACTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.36, C:0.11, G:0.03, T:0.50
Consensus pattern (19 bp):
TATTTTTATCTTCAAAAAG
Found at i:64309597 original size:22 final size:22
Alignment explanation
Indices: 64309569--64309617 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
64309559 AAAAAGGAAA
* *
64309569 TAGCAAGAAAATAGTAAAAAAG
1 TAGCAAGAAAACAATAAAAAAG
64309591 TAGCAAGAAAACAATAAAAAAG
1 TAGCAAGAAAACAATAAAAAAG
64309613 TAGCA
1 TAGCA
64309618 TATTTTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.63, C:0.08, G:0.16, T:0.12
Consensus pattern (22 bp):
TAGCAAGAAAACAATAAAAAAG
Found at i:64320882 original size:38 final size:39
Alignment explanation
Indices: 64320836--64320911 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 39
64320826 ACCAAAAATG
*
64320836 TATTTTAAAAATAAAAAAAT-TAAAAAGTATTTTAAAAA
1 TATTTTAAAAATAAAAAAATAAAAAAAGTATTTTAAAAA
** *
64320874 TATTTTAAATTTTAAAAAATAAAAAAAGTATTTTAAAA
1 TATTTTAAAAATAAAAAAATAAAAAAAGTATTTTAAAA
64320912 TTAAAAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
38 17 0.52
39 16 0.48
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (39 bp):
TATTTTAAAAATAAAAAAATAAAAAAAGTATTTTAAAAA
Found at i:64320899 original size:27 final size:27
Alignment explanation
Indices: 64320869--64320951 Score: 125
Period size: 26 Copynumber: 3.1 Consensus size: 27
64320859 AAAGTATTTT
*
64320869 AAAAA-TATTTTAAATTTTAAAAAATAA
1 AAAAAGTATTTTAAA-ATTAAAAAATAA
64320896 AAAAAGTATTTTAAAATT-AAAAATAA
1 AAAAAGTATTTTAAAATTAAAAAATAA
*
64320922 AAAAAGTATTTTAAAAATAAAAAATAA
1 AAAAAGTATTTTAAAATTAAAAAATAA
64320949 AAA
1 AAA
64320952 TATTTATTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.48
27 18 0.35
28 9 0.17
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (27 bp):
AAAAAGTATTTTAAAATTAAAAAATAA
Found at i:64320917 original size:26 final size:26
Alignment explanation
Indices: 64320869--64320951 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 26
64320859 AAAGTATTTT
*
64320869 AAAAA-TATTTTAAATTTTAAAAAATAA
1 AAAAAGTATTTTAAA-ATT-AAAAATAA
64320896 AAAAAGTATTTTAAAATTAAAAATAA
1 AAAAAGTATTTTAAAATTAAAAATAA
*
64320922 AAAAAGTATTTTAAAAATAAAAAATAA
1 AAAAAGTATTTT-AAAATTAAAAATAA
64320949 AAA
1 AAA
64320952 TATTTATTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
26 20 0.38
27 23 0.44
28 9 0.17
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (26 bp):
AAAAAGTATTTTAAAATTAAAAATAA
Found at i:64328522 original size:2 final size:2
Alignment explanation
Indices: 64328498--64328537 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
64328488 TATGTACATG
* * *
64328498 TA TA TG TA TA TG TA TA TA CA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
64328538 AGTTAATGAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (2 bp):
TA
Found at i:64332223 original size:17 final size:17
Alignment explanation
Indices: 64332201--64332238 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
64332191 AAAAGTAAGT
*
64332201 ATACAGGTAACAGACTC
1 ATACAGGCAACAGACTC
64332218 ATACAGGCAACAGACTC
1 ATACAGGCAACAGACTC
64332235 ATAC
1 ATAC
64332239 TTAAATACGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.26, G:0.16, T:0.16
Consensus pattern (17 bp):
ATACAGGCAACAGACTC
Found at i:64337492 original size:17 final size:18
Alignment explanation
Indices: 64337460--64337493 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
64337450 GATTTTAATG
*
64337460 TATTTTCATGTTATGTTA
1 TATTTTCATATTATGTTA
64337478 TATTTT-ATATTATGTT
1 TATTTTCATATTATGTT
64337494 TTTAATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.24, C:0.03, G:0.09, T:0.65
Consensus pattern (18 bp):
TATTTTCATATTATGTTA
Found at i:64338847 original size:19 final size:18
Alignment explanation
Indices: 64338816--64338851 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
64338806 AAAAAAAAAC
64338816 AAATATCAACAGAAGTAG
1 AAATATCAACAGAAGTAG
*
64338834 AAATGATCACCAGAAGTA
1 AAAT-ATCAACAGAAGTA
64338852 ATTTTGGCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.53, C:0.14, G:0.17, T:0.17
Consensus pattern (18 bp):
AAATATCAACAGAAGTAG
Found at i:64346961 original size:22 final size:22
Alignment explanation
Indices: 64346936--64346988 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
64346926 TTTAAAAAAA
*
64346936 AATATTTATATTATATTATTTT
1 AATATTTATATTATAATATTTT
*
64346958 AATATTTAATATTTTAATATTTT
1 AATATTT-ATATTATAATATTTT
*
64346981 -TTATTTAT
1 AATATTTAT
64346989 CGAAAGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 12 0.44
23 13 0.48
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
AATATTTATATTATAATATTTT
Found at i:64346963 original size:8 final size:8
Alignment explanation
Indices: 64346952--64346980 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
64346942 TATATTATAT
64346952 TATTTTAA
1 TATTTTAA
64346960 TA-TTTAA
1 TATTTTAA
64346967 TATTTTAA
1 TATTTTAA
64346975 TATTTT
1 TATTTT
64346981 TTATTTATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
TATTTTAA
Found at i:64346985 original size:15 final size:15
Alignment explanation
Indices: 64346943--64346986 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
64346933 AAAAATATTT
64346943 ATATTATATTATTTTA
1 ATATT-TATTATTTTA
*
64346959 ATATTTAATATTTTA
1 ATATTTATTATTTTA
*
64346974 ATATTTTTTATTT
1 ATATTTATTATTT
64346987 ATCGAAAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 20 0.80
16 5 0.20
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATATTTATTATTTTA
Found at i:64354844 original size:16 final size:17
Alignment explanation
Indices: 64354815--64354847 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
64354805 CTCAAAAAAA
64354815 TAACACTAAAATTTATT
1 TAACACTAAAATTTATT
*
64354832 TAAC-CTAAGATTTATT
1 TAACACTAAAATTTATT
64354848 CTTTGCTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (17 bp):
TAACACTAAAATTTATT
Found at i:64356077 original size:15 final size:15
Alignment explanation
Indices: 64356034--64356080 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
64356024 AAGTTGTGGA
*
64356034 TTTAGTCTCTGTA-T
1 TTTAGTCTTTGTATT
*
64356048 TTTAAT-TTTGTTATT
1 TTTAGTCTTTG-TATT
64356063 TTTAGTCTTTGTATT
1 TTTAGTCTTTGTATT
64356078 TTT
1 TTT
64356081 TAAATTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 3 0.11
14 7 0.26
15 13 0.48
16 4 0.15
ACGTcount: A:0.15, C:0.06, G:0.11, T:0.68
Consensus pattern (15 bp):
TTTAGTCTTTGTATT
Found at i:64358861 original size:23 final size:23
Alignment explanation
Indices: 64358835--64358890 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
64358825 TTTGTTTCAC
* *
64358835 ACTTTTATTCCATAATATTTTTA-
1 ACTTTTATTACATAA-ATTTATAT
*
64358858 ACTTGTATTACATAAATTTATAT
1 ACTTTTATTACATAAATTTATAT
64358881 ACTTTTATTA
1 ACTTTTATTA
64358891 TTTTTATTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 6 0.21
23 22 0.79
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.54
Consensus pattern (23 bp):
ACTTTTATTACATAAATTTATAT
Found at i:64359340 original size:17 final size:18
Alignment explanation
Indices: 64359300--64359361 Score: 65
Period size: 17 Copynumber: 3.4 Consensus size: 18
64359290 TATTTTGAAA
*
64359300 TTATGAAATATATAAAAT
1 TTATTAAATATATAAAAT
*
64359318 CT-TTAAATATAT-AAAT
1 TTATTAAATATATAAAAT
*
64359334 TTATTAAAAAATATAAATAT
1 TTATT-AAATATATAAA-AT
64359354 TTATTAAA
1 TTATTAAA
64359362 AATTAAGCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
16 5 0.14
17 11 0.31
18 8 0.22
19 5 0.14
20 7 0.19
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (18 bp):
TTATTAAATATATAAAAT
Found at i:64359364 original size:19 final size:20
Alignment explanation
Indices: 64359322--64359363 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
64359312 TAAAATCTTT
64359322 AAATATATAAATTTATTAAA
1 AAATATATAAATTTATTAAA
64359342 AAATATA-AATATTTATTAAA
1 AAATATATAA-ATTTATTAAA
64359362 AA
1 AA
64359364 TTAAGCAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AAATATATAAATTTATTAAA
Found at i:64359784 original size:19 final size:19
Alignment explanation
Indices: 64359762--64359806 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
64359752 TTTTTACAAT
64359762 TTTTTTATAAA-TTTAT-A
1 TTTTTTATAAATTTTATAA
*
64359779 TATTTTTAAAAATTTTATAA
1 T-TTTTTATAAATTTTATAA
64359799 TTTTTTAT
1 TTTTTTAT
64359807 TAATATTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 1 0.04
18 9 0.39
19 11 0.48
20 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTTTATAAATTTTATAA
Found at i:64359786 original size:18 final size:18
Alignment explanation
Indices: 64359763--64359803 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
64359753 TTTTACAATT
*
64359763 TTTTTATAAA-TTTATATA
1 TTTTTAAAAATTTTATA-A
64359781 TTTTTAAAAATTTTATAA
1 TTTTTAAAAATTTTATAA
64359799 TTTTT
1 TTTTT
64359804 TATTAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTAAAAATTTTATAA
Found at i:64366681 original size:9 final size:9
Alignment explanation
Indices: 64366667--64366710 Score: 54
Period size: 9 Copynumber: 4.7 Consensus size: 9
64366657 TATGCACTTA
64366667 ATAAAAATT
1 ATAAAAATT
64366676 ATAAAAA-T
1 ATAAAAATT
64366684 ATTAAAAATAT
1 A-TAAAAAT-T
64366695 ATTAAAAATT
1 A-TAAAAATT
64366705 ATAAAA
1 ATAAAA
64366711 TTTTATAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
8 2 0.06
9 18 0.56
10 2 0.06
11 10 0.31
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:64366702 original size:20 final size:18
Alignment explanation
Indices: 64366668--64366759 Score: 60
Period size: 19 Copynumber: 4.8 Consensus size: 18
64366658 ATGCACTTAA
64366668 TAAAAATTATAAAAATAT
1 TAAAAATTATAAAAATAT
*
64366686 TAAAAATATATTAAAA-AT
1 TAAAAAT-TATAAAAATAT
* *
64366704 TATAAAATTTTATAAAGTAGT
1 TA-AAAATTATA-AAAATA-T
* *
64366725 AAGAAAATTATAAAAAAAT
1 TA-AAAATTATAAAAATAT
*
64366744 GTAAAGAAATATAAAA
1 -TAAA-AATTATAAAA
64366760 TTTGTAAAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
18 13 0.23
19 18 0.32
20 15 0.27
21 10 0.18
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.30
Consensus pattern (18 bp):
TAAAAATTATAAAAATAT
Found at i:64366781 original size:49 final size:49
Alignment explanation
Indices: 64366669--64366784 Score: 116
Period size: 49 Copynumber: 2.4 Consensus size: 49
64366659 TGCACTTAAT
* *
64366669 AAAAATTATAAAAA-TATTAAAAATATATTAAAAATTATAAAATTTTATA
1 AAAAAGTATAAAAATTA-TAAAAATATATTAAAAAATATAAAATTTTATA
**
64366718 AAGTAGTA-AGAAAATTATAAAAA-A-ATGTAAAGAAATATAAAATTTGTA-A
1 AAAAAGTATA-AAAATTATAAAAATATAT-TAAA-AAATATAAAATTT-TATA
64366767 AAAAAGTATAAAAATTAT
1 AAAAAGTATAAAAATTAT
64366785 TGTGACAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
47 2 0.04
48 6 0.11
49 42 0.76
50 5 0.09
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (49 bp):
AAAAAGTATAAAAATTATAAAAATATATTAAAAAATATAAAATTTTATA
Found at i:64367704 original size:10 final size:10
Alignment explanation
Indices: 64367691--64367733 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
64367681 TTTATAGATA
64367691 TTATTTTAAT
1 TTATTTTAAT
64367701 TTATTTTAAT
1 TTATTTTAAT
*
64367711 ATAGATTTTAAT
1 -T-TATTTTAAT
*
64367723 ATATTTTAAT
1 TTATTTTAAT
64367733 T
1 T
64367734 ATAAGCTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
10 18 0.67
11 1 0.04
12 8 0.30
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (10 bp):
TTATTTTAAT
Found at i:64379246 original size:366 final size:365
Alignment explanation
Indices: 64378502--64379969 Score: 2212
Period size: 366 Copynumber: 4.0 Consensus size: 365
64378492 AGCTCTAACA
* * * *
64378502 GTTGCAATTTCATGTTCAACTCGAGGAACTCCCTTTTG-TCCCATAACTGCCTCTGAAAGCACAT
1 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCT-CCATAACTGCCTCTGAAAGCGCAT
**** *
64378566 CAGAACTAACAACAGAAAGACAATCTGTGCTTCTCTTTGAATTAACCGGCTCCTGTGCACAAAAG
65 CAGAACTAACAACAGAAAGACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAG
* *
64378631 TTGGCAACAACAGCGCTAGCAATGCTGCTGCTGCCCCACCGTTTTTTCCTCCTACTGTAAACTAA
130 TTGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTTCCT-C--CTGTAAACTAA
* * * * *
64378696 AATCGGCATAGGACTTTCAAACATCACACTCGCAGATAACCGCTGAGAACCAGTTTCGGGTAAGG
192 AATCGGCATAGGACTTTCAAACATCATACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGG
**
64378761 GAAGGCATGAATCCTCAGCCTCTTTACATCCAGGTTGTGAAGTACCATCACATTTAGGAGTCATC
257 GAAGGCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCAT-
* * *
64378826 CGGAAAGTTTCATTATCAGACATCCAATCACATAAAGAAATCTTT
321 CTGCAAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
* *
64378871 ATTGCAGTTTCATGTTCAACTTGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
1 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
64378936 AGAACTAACAACAGAAAGACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
66 AGAACTAACAACAGAAAGACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
** * * *
64379001 TGGCAACAACAGCTTTAGCACTGCTGCTTCTGCCCCACCGTTTCTTCCTCCTGTAAATTAAATTC
131 TGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTTCCTCCTGTAAACTAAAATC
* * * *
64379066 GGAATAGGACTTTCAAACCTCATACTTACAGATGACTGCTGAGAACCAATTTTGGGTAAGGGAAG
196 GGCATAGGACTTTCAAACATCATACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGGGAAG
64379131 GCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATCTTGC
261 GCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATC-TGC
*
64379196 AAGTTCCATTACCAGACATCCAATCACATAAAGAAATCTTT
325 AAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
* *
64379237 GTTGCAGTTTGATGTTCAACTCGAGAAACTCCCTTTCGCT---TAACTGCCTCTGAAAGTGCATC
1 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
*
64379299 AGAACTAACAACAGAAAGACAATCCGCACTTCTCTTTGAATTAA-CATGCTCCTGTGCACAAAAG
66 AGAACTAACAACAGAAAGACAATCCACACTTCTCTTTGAATTAACCA-GCTCCTGTGCACAAAAG
* * * * *
64379363 TTGGCAACAATAGAGCTAGCGCTGCTGCTGCTGCCCCACCGTTTCTTCCCCCTACTGTAAACTGA
130 TTGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTT---CCTCCTGTAAACTAA
* * * * *
64379428 AATCGGCATAGGACTTTCAAACATTACATTCACAGATGGCTGCTGAGAACCAGTTCTGGGTAAGG
192 AATCGGCATAGGACTTTCAAACATCATACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGG
64379493 GAAGGCATGAATCCTCAGCCTCTTTACATCCAGC-TTGTGAAGTACCATCACATTTAGGAGTCAT
257 GAAGGCATGAATCCTCAGCCTCTTTACATCCA-CTTTGTGAAGTACCATCACATTTAGGAGTCAT
*
64379557 CTGCCAAGTTTCATTACCAGACATCCAATCACATAAAGAAGTCTTT
321 CTG-CAAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
* * *
64379603 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTTGCTCCATAACTGCCTCTGAAAGTGCATT
1 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
* *
64379668 AGAACTAACAACAGAAAAACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGGACAAAAGT
66 AGAACTAACAACAGAAAGACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
* *
64379733 TGGCAACAACAGCACTAGCACTGCTGCTGCAGCCCCACCGTTTCTTCCTCCTGTAAACTAAAATC
131 TGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTTCCTCCTGTAAACTAAAATC
* *
64379798 GGCATAGGACTTTCAAACATCATACTCACAGATGACTGTTGAGAACCAGTTTTGGGAAAGGGAAG
196 GGCATAGGACTTTCAAACATCATACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGGGAAG
* * * **
64379863 GCATGAATCCTCAGCCTCTTTACAACCACTTCGTGAAGTACCATCGCATTTAGGAGTCATCAACC
261 GCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATC-TGC
64379928 AAGTTTCATTACCAGACATCCAATCA-AGTAAAGAAATCTTT
325 AAGTTTCATTACCAGACATCCAATCACA-TAAAGAAATCTTT
64379969 G
1 G
64379970 CTTCCTGCAT
Statistics
Matches: 999, Mismatches: 85, Indels: 33
0.89 0.08 0.03
Matches are distributed among these distances:
362 2 0.00
363 122 0.12
365 5 0.01
366 583 0.58
367 1 0.00
368 1 0.00
369 282 0.28
370 3 0.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (365 bp):
GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
AGAACTAACAACAGAAAGACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
TGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTTCCTCCTGTAAACTAAAATC
GGCATAGGACTTTCAAACATCATACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGGGAAG
GCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATCTGCA
AGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
Found at i:64380183 original size:127 final size:127
Alignment explanation
Indices: 64379959--64380336 Score: 679
Period size: 127 Copynumber: 3.0 Consensus size: 127
64379949 AATCAAGTAA
*
64379959 AGAAATCTTTGCTTCCTGCATTCAAACACAT--AATAGGACTGTTTCAATTGAACTAGAAATTTG
1 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAGGACTGTTTCAATTGAACTAGAAATTTG
64380022 AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
66 AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
*
64380084 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAAGACTGTTTCAATTGAACTAGAAATTTG
1 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAGGACTGTTTCAATTGAACTAGAAATTTG
* *
64380149 ACGTCCCAATCTAAATCTCACCAAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
66 AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
* **
64380211 AAAAATCTTTGTTTCCTGCGGTCAAACACATAAAATAGGACTGTTTCAATTGAACTAGAAATTTG
1 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAGGACTGTTTCAATTGAACTAGAAATTTG
64380276 AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCT
66 AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCT
64380337 AACTTCCACC
Statistics
Matches: 241, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
125 30 0.12
127 211 0.88
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (127 bp):
AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAGGACTGTTTCAATTGAACTAGAAATTTG
AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
Found at i:64381558 original size:13 final size:15
Alignment explanation
Indices: 64381540--64381576 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
64381530 AACTCGAGCA
64381540 TTAATTATTTAA-T-
1 TTAATTATTTAATTG
*
64381553 TTAATTAGTTAATTG
1 TTAATTATTTAATTG
64381568 TTAATTATT
1 TTAATTATT
64381577 ATTTAACTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 11 0.55
14 1 0.05
15 8 0.40
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (15 bp):
TTAATTATTTAATTG
Found at i:64381752 original size:22 final size:20
Alignment explanation
Indices: 64381705--64381754 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
64381695 TGAAGTGAAG
**
64381705 GTGATATTGAATTATGAAAT
1 GTGATATTGAATTAAAAAAT
*
64381725 GCGATATTGAATTTAAAAAAAT
1 GTGATATTGAA-TT-AAAAAAT
64381747 GTGATATT
1 GTGATATT
64381755 ATGGACTTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 10 0.42
21 2 0.08
22 12 0.50
ACGTcount: A:0.42, C:0.02, G:0.18, T:0.38
Consensus pattern (20 bp):
GTGATATTGAATTAAAAAAT
Found at i:64391390 original size:9 final size:9
Alignment explanation
Indices: 64391378--64391426 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
64391368 TAAACTAATT
*
64391378 AAATAAAGG
1 AAATAAAAG
64391387 AAATAAAAG
1 AAATAAAAG
64391396 AAATAAAAG
1 AAATAAAAG
* *
64391405 ATAGAAAAG
1 AAATAAAAG
*
64391414 AGATAAATAG
1 AAATAAA-AG
64391424 AAA
1 AAA
64391427 CAGAATAGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
9 29 0.88
10 4 0.12
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.12
Consensus pattern (9 bp):
AAATAAAAG
Found at i:64392213 original size:14 final size:15
Alignment explanation
Indices: 64392175--64392215 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
64392165 TTTGTGATTG
64392175 ATATGAATTTGATTGAA
1 ATATGAA-TTGA-TGAA
64392192 AT-TGAATTGA-GAA
1 ATATGAATTGATGAA
64392205 ATATGAATTGA
1 ATATGAATTGA
64392216 ATACCCTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.22
14 8 0.35
15 4 0.17
16 4 0.17
17 2 0.09
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.37
Consensus pattern (15 bp):
ATATGAATTGATGAA
Found at i:64392505 original size:15 final size:16
Alignment explanation
Indices: 64392485--64392518 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
64392475 ATTGGCATTA
64392485 GAATTGAT-ATTGAAT
1 GAATTGATAATTGAAT
64392500 GAATTGATAAATTGAAT
1 GAATTGAT-AATTGAAT
64392517 GA
1 GA
64392519 TTTTATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
17 9 0.53
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (16 bp):
GAATTGATAATTGAAT
Found at i:64395956 original size:42 final size:42
Alignment explanation
Indices: 64395854--64396011 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
64395844 AGCTCGTACA
* * *
64395854 ATGCCAACGTCCCAGACGTAGTCTTACATGTAATCAAATAACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCATAT-ACG
*
64395897 ATGCC-ACTGTCCTAGACAG-GGTCTTACACGTAATCATATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCATATACG
* * * *
64395939 ATGCCAATGTCCCAGACATGGTCTTACACATAAATC-TCAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AATCAT-ATA-CG
*
64395983 ATGCCAACATCCCAGACGTGGTCTTACAC
1 ATGCCAACGTCCCAGACGTGGTCTTACAC
64396012 AAAATCACAT
Statistics
Matches: 96, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
42 30 0.31
43 37 0.39
44 29 0.30
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCATATACG
Found at i:64407065 original size:20 final size:19
Alignment explanation
Indices: 64407036--64407086 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
64407026 ATGTACTTCA
*
64407036 TTTAATTTTTTA-TATTTGTT
1 TTTAAATTTTTAGT-TTT-TT
*
64407056 TTTAAATTTTGAGTTTTTT
1 TTTAAATTTTTAGTTTTTT
64407075 TTTAAATATTTT
1 TTTAAAT-TTTT
64407087 CATAAATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 9 0.35
20 16 0.62
21 1 0.04
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (19 bp):
TTTAAATTTTTAGTTTTTT
Found at i:64408866 original size:31 final size:31
Alignment explanation
Indices: 64408823--64408883 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
64408813 TTTTAATTAA
* *
64408823 TTTCAAATTTTTTAAAATTTCTCA-TTAAACC
1 TTTCAAAATTTTTAAAAATT-TCAGTTAAACC
64408854 TTTCAAAATTTTTAAAAATTTCAGTTAAAC
1 TTTCAAAATTTTTAAAAATTTCAGTTAAAC
64408884 ACCTCGAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 3 0.11
31 24 0.89
ACGTcount: A:0.39, C:0.13, G:0.02, T:0.46
Consensus pattern (31 bp):
TTTCAAAATTTTTAAAAATTTCAGTTAAACC
Found at i:64408897 original size:31 final size:31
Alignment explanation
Indices: 64408825--64408897 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 31
64408815 TTAATTAATT
* *
64408825 TCAAATTTTTTAAAATTTCTCATTAAACCTT
1 TCAAATTTTTTAAAAATTCTCATTAAACCTC
*
64408856 TCAAAATTTTTAAAAATT-TCAGTTAAACAC-C
1 TCAAATTTTTTAAAAATTCTCA-TTAAAC-CTC
*
64408887 TCGAATTTTTT
1 TCAAATTTTTT
64408898 TTGTAGATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
30 3 0.09
31 31 0.89
32 1 0.03
ACGTcount: A:0.37, C:0.15, G:0.03, T:0.45
Consensus pattern (31 bp):
TCAAATTTTTTAAAAATTCTCATTAAACCTC
Found at i:64415269 original size:30 final size:30
Alignment explanation
Indices: 64415233--64415294 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
64415223 ATGAGAGTTT
*
64415233 ATTAGTGGCTCACGTGAAGTGCACATGAAA
1 ATTAGTGGCTCACGTGAAATGCACATGAAA
*
64415263 ATTAGTGGCTCATGTGAAATGCACATGAAA
1 ATTAGTGGCTCACGTGAAATGCACATGAAA
64415293 AT
1 AT
64415295 CTTCTAAGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (30 bp):
ATTAGTGGCTCACGTGAAATGCACATGAAA
Found at i:64418111 original size:52 final size:58
Alignment explanation
Indices: 64418006--64418112 Score: 136
Period size: 58 Copynumber: 1.9 Consensus size: 58
64417996 AAAATATTCA
* * *
64418006 TTTATTTTTATATATTTTTAAAATTTATATATTAATATTTCTTGTCAACAATATTATT
1 TTTATTCTTATATATTTTTAAAATTTATATAATAATATTTCTTGTCAAAAATATTATT
*
64418064 TTTATTCTTATATA-TTTT-AAATTTAT-TAAT-ATATTT-TT-TGAAAAATATT
1 TTTATTCTTATATATTTTTAAAATTTATATAATAATATTTCTTGTCAAAAATATT
64418113 TATGCATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
52 9 0.20
53 2 0.04
54 6 0.13
55 3 0.07
56 8 0.18
57 4 0.09
58 13 0.29
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.59
Consensus pattern (58 bp):
TTTATTCTTATATATTTTTAAAATTTATATAATAATATTTCTTGTCAAAAATATTATT
Done.