Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 218 of 230
Found at i:64750438 original size:12 final size:12
Alignment explanation
Indices: 64750421--64750445 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64750411 AAACTTAGCT
64750421 AACTTAAGAACA
1 AACTTAAGAACA
64750433 AACTTAAGAACA
1 AACTTAAGAACA
64750445 A
1 A
64750446 TTCCAAGGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AACTTAAGAACA
Found at i:64752377 original size:14 final size:15
Alignment explanation
Indices: 64752358--64752386 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
64752348 GTTTCCATTT
64752358 TCTTTCT-TCTTCCC
1 TCTTTCTCTCTTCCC
64752372 TCTTTCTCTCTTCCC
1 TCTTTCTCTCTTCCC
64752387 CTGCAAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTCTCTCTTCCC
Found at i:64753377 original size:14 final size:15
Alignment explanation
Indices: 64753350--64753378 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
64753340 TGATTTGCAG
64753350 GGGAAGAGAGAAAGA
1 GGGAAGAGAGAAAGA
64753365 GGGAAGA-AGAAAGA
1 GGGAAGAGAGAAAGA
64753379 AAATGGAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (15 bp):
GGGAAGAGAGAAAGA
Found at i:64758186 original size:20 final size:20
Alignment explanation
Indices: 64758152--64758189 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
64758142 TCCCACATGG
64758152 TATAATGTAAAATAAAAGAA
1 TATAATGTAAAATAAAAGAA
64758172 TATAA-GTAAAGATAAAAG
1 TATAATGTAAA-ATAAAAG
64758190 CATCTTCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.24
Consensus pattern (20 bp):
TATAATGTAAAATAAAAGAA
Found at i:64758290 original size:12 final size:12
Alignment explanation
Indices: 64758273--64758299 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
64758263 CATTGAAGGC
64758273 TCAAGATGAAAT
1 TCAAGATGAAAT
64758285 TCAAGATGAAAT
1 TCAAGATGAAAT
64758297 TCA
1 TCA
64758300 CTTCAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.11, G:0.15, T:0.26
Consensus pattern (12 bp):
TCAAGATGAAAT
Found at i:64763175 original size:15 final size:15
Alignment explanation
Indices: 64763126--64763176 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
64763116 TTTAAAATAA
64763126 TTATATTATTTTTAAT
1 TTATA-TATTTTTAAT
*
64763142 TTA-ATATTTAATAATT
1 TTATATATTT-TTAA-T
*
64763158 TTATATATTTTTCAT
1 TTATATATTTTTAAT
64763173 TTAT
1 TTAT
64763177 TAAAATTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
14 5 0.17
15 9 0.31
16 9 0.31
17 6 0.21
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATATATTTTTAAT
Found at i:64763511 original size:17 final size:16
Alignment explanation
Indices: 64763489--64763535 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
64763479 CAATTAACTG
64763489 ACAAAATATATAAAAAT
1 ACAAAATA-ATAAAAAT
*
64763506 ACAAAA-AATATAAAT
1 ACAAAATAATAAAAAT
*
64763521 ATAAAATAATAAAAA
1 ACAAAATAATAAAAA
64763536 CGAACAATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 12 0.46
16 8 0.31
17 6 0.23
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.21
Consensus pattern (16 bp):
ACAAAATAATAAAAAT
Found at i:64766556 original size:19 final size:18
Alignment explanation
Indices: 64766528--64766564 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
64766518 AAGTTGGATG
64766528 TTTTTCTTTTCTTCTCTTT
1 TTTTTCTTTTCTT-TCTTT
*
64766547 TTTTTGTTTTCTTTCTTT
1 TTTTTCTTTTCTTTCTTT
64766565 CTTGTGCATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (18 bp):
TTTTTCTTTTCTTTCTTT
Found at i:64772846 original size:129 final size:129
Alignment explanation
Indices: 64772614--64772923 Score: 423
Period size: 129 Copynumber: 2.4 Consensus size: 129
64772604 AAAAATTTAT
* * * * *
64772614 GTCAGAATGAGATACAC-TTG-ACATGCCATGTGTAACTGT-TTGGTTATTCTATGCATTTTATC
1 GTCAGAATGAGGTACACATGGCACAT--CATGTGTAACTGTCTT-GTTATTTTGTACATTTTATC
* * *
64772676 AAAAAGCAAACTGGTCATTTTATTAAAAATCTTATTCATTTCTACTGTTAAGAATTGGTCCTTGA
63 AAAAAGCAAACTGGTCATTCTATTAAAAATCTTATTAATTTCTACTATTAAGAATTGGTCCTTGA
64772741 AC
128 AC
64772743 GTCAGAATGAGGTACACATGGCACATCATGTGTAACTGTCTTGTTATTTTGTACATTTTATCAAA
1 GTCAGAATGAGGTACACATGGCACATCATGTGTAACTGTCTTGTTATTTTGTACATTTTATCAAA
* *
64772808 AAGCAAACTGGTCATTCTATTAAAAGT-TTCATTAATTTCTACTATTAAGAATTGGTCCTTGAAT
66 AAGCAAACTGGTCATTCTATTAAAAATCTT-ATTAATTTCTACTATTAAGAATTGGTCCTTGAAC
* **
64772872 GTCAGAATGAGGTACACATGGCATGA-CATGTGTAACTGTCTAATTATTTTGT
1 GTCAGAATGAGGTACACATGGCA-CATCATGTGTAACTGTCTTGTTATTTTGT
64772924 TAATGTCAGT
Statistics
Matches: 163, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
128 2 0.01
129 152 0.93
130 5 0.03
131 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (129 bp):
GTCAGAATGAGGTACACATGGCACATCATGTGTAACTGTCTTGTTATTTTGTACATTTTATCAAA
AAGCAAACTGGTCATTCTATTAAAAATCTTATTAATTTCTACTATTAAGAATTGGTCCTTGAAC
Found at i:64775207 original size:26 final size:25
Alignment explanation
Indices: 64775156--64775206 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
64775146 ATATATTATT
64775156 ATTTTGAAATTAAAAAATATATAAA
1 ATTTTGAAATTAAAAAATATATAAA
* *
64775181 ATTTTTAAATATAAAAATTA-ATAAA
1 ATTTTGAAAT-TAAAAAATATATAAA
64775206 A
1 A
64775207 AAATATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (25 bp):
ATTTTGAAATTAAAAAATATATAAA
Found at i:64777025 original size:21 final size:21
Alignment explanation
Indices: 64777001--64777040 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
64776991 TCTTTTCTAC
*
64777001 AATTAAAAGTCAAAACCATTA
1 AATTAAAAGGCAAAACCATTA
64777022 AATTAAAAGGCAAAACCAT
1 AATTAAAAGGCAAAACCAT
64777041 GTCGTTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.57, C:0.15, G:0.07, T:0.20
Consensus pattern (21 bp):
AATTAAAAGGCAAAACCATTA
Found at i:64785192 original size:9 final size:9
Alignment explanation
Indices: 64785178--64785247 Score: 113
Period size: 9 Copynumber: 7.8 Consensus size: 9
64785168 TTTGGTTAAA
64785178 AATTACCCG
1 AATTACCCG
64785187 AATTACCCG
1 AATTACCCG
64785196 AATTACCCG
1 AATTACCCG
64785205 AATTACCCG
1 AATTACCCG
*
64785214 AATTAACCG
1 AATTACCCG
*
64785223 AATTAACCG
1 AATTACCCG
*
64785232 AATTAACCG
1 AATTACCCG
64785241 AATTACC
1 AATTACC
64785248 AAAAAATACC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 59 1.00
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:64785781 original size:5 final size:5
Alignment explanation
Indices: 64785768--64785799 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
64785758 ACCTTTTTCT
64785768 TTTTCA TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA T
64785800 GTCCACATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:64786063 original size:30 final size:29
Alignment explanation
Indices: 64785990--64786064 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 29
64785980 TCACTATTAT
*
64785990 ATTGACTTAT-ATTTTA-TAGTTTTTAAG
1 ATTGAATTATAATTTTATTAGTTTTTAAG
* * * *
64786017 ATTAAATCAAAATTTTATTATTTTTTAAGG
1 ATTGAATTATAATTTTATTAGTTTTTAA-G
64786047 ATTGAATTATAATTTTAT
1 ATTGAATTATAATTTTAT
64786065 CATGTATTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
27 6 0.16
28 6 0.16
29 9 0.24
30 16 0.43
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (29 bp):
ATTGAATTATAATTTTATTAGTTTTTAAG
Found at i:64791964 original size:17 final size:17
Alignment explanation
Indices: 64791944--64791982 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
64791934 ATTAAATTGC
64791944 AATACTTT-TTAAAAAAA
1 AATACTTTATT-AAAAAA
64791961 AATA-TTTATTAAAAAA
1 AATACTTTATTAAAAAA
64791977 AATACT
1 AATACT
64791983 AGCATATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (17 bp):
AATACTTTATTAAAAAA
Found at i:64792122 original size:14 final size:16
Alignment explanation
Indices: 64792103--64792148 Score: 53
Period size: 17 Copynumber: 3.0 Consensus size: 16
64792093 ATCTAACCTT
64792103 ATTTTTATA-A-TTTA
1 ATTTTTATATATTTTA
*
64792117 ATTTTTAATATATTTTG
1 ATTTTT-ATATATTTTA
64792134 ATTTTTATAT-TTTTA
1 ATTTTTATATATTTTA
64792149 TAATATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
16 5 0.19
17 9 0.33
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (16 bp):
ATTTTTATATATTTTA
Found at i:64795022 original size:33 final size:33
Alignment explanation
Indices: 64794940--64795031 Score: 87
Period size: 33 Copynumber: 2.7 Consensus size: 33
64794930 TGGTCTAACC
* * * *
64794940 ATGGTCTTACGTTCAAAGTGCCATAACCCAGTT
1 ATGGTCTTACATTTAAAATGCCATAACCCAGCT
* * *
64794973 ATGGTCTTTTCA-TTAAAATGCCATAGCCTAGCT
1 ATGGTC-TTACATTTAAAATGCCATAACCCAGCT
64795006 ATGGTCTTACATTTAAACACTGCCAT
1 ATGGTCTTACATTTAAA-A-TGCCAT
64795032 GGTCCAACCA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
32 4 0.09
33 33 0.70
34 4 0.09
35 6 0.13
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (33 bp):
ATGGTCTTACATTTAAAATGCCATAACCCAGCT
Found at i:64798101 original size:16 final size:16
Alignment explanation
Indices: 64798082--64798112 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64798072 TTAGAGAAGG
*
64798082 GGTAATGGTCCTCTAA
1 GGTAATGGTACTCTAA
64798098 GGTAATGGTACTCTA
1 GGTAATGGTACTCTA
64798113 TGATGTTAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (16 bp):
GGTAATGGTACTCTAA
Found at i:64800499 original size:104 final size:103
Alignment explanation
Indices: 64800314--64800504 Score: 249
Period size: 104 Copynumber: 1.8 Consensus size: 103
64800304 CATCTGCCGA
* * **
64800314 ATATAATATTCATGTTACTTGCATTGTATCAATTTCAAAATACTACCGAAAATTAAAACTTACCA
1 ATATAATATTCATGTTACTTGCATAGTATCAATTTCAAAATAATACAAAAAATTAAAACTTACCA
* *
64800379 ACAAGTATTGAATGCAGTGACAGTAACGATGGCGGAAT
66 ACAAATATTGAATGCAGCGACAGTAACGATGGCGGAAT
* * *
64800417 ATATAAATATTCATGTTATTTGCATAGTATCAGTTTCAAAATAATACAAAAAAATTAAAGC-TAC
1 ATAT-AATATTCATGTTACTTGCATAGTATCAATTTCAAAATAATAC-AAAAAATTAAAACTTAC
* **
64800481 CAATAAATATTGGGTGCAGCGACA
64 CAACAAATATTGAATGCAGCGACA
64800505 ATAGTGGAAC
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
103 4 0.05
104 60 0.81
105 10 0.14
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (103 bp):
ATATAATATTCATGTTACTTGCATAGTATCAATTTCAAAATAATACAAAAAATTAAAACTTACCA
ACAAATATTGAATGCAGCGACAGTAACGATGGCGGAAT
Found at i:64803456 original size:40 final size:38
Alignment explanation
Indices: 64803401--64803500 Score: 112
Period size: 40 Copynumber: 2.6 Consensus size: 38
64803391 AAAGTTTTCT
* *
64803401 AACACATTAAAAATATATTAAAAAATAT-TTATATTAAAA
1 AACACA-TATAAATATAATAAAAAATATATTATATT-AAA
* * *
64803440 AACACTACTATAAATATAATAAATATTTTATTATATTAAA
1 AACAC-A-TATAAATATAATAAAAAATATATTATATTAAA
64803480 AACACATATAAATATAATAAA
1 AACACATATAAATATAATAAA
64803501 TATTTTTATT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
38 15 0.28
39 6 0.11
40 25 0.47
41 7 0.13
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (38 bp):
AACACATATAAATATAATAAAAAATATATTATATTAAA
Found at i:64803490 original size:38 final size:41
Alignment explanation
Indices: 64803429--64803518 Score: 141
Period size: 38 Copynumber: 2.2 Consensus size: 41
64803419 TAAAAAATAT
64803429 TTATATTAAAAAACACTACTATAAATATAATAAATA-TTTTA
1 TTATATT-AAAAACACTACTATAAATATAATAAATATTTTTA
64803470 TTATATTAAAAACAC-A-TATAAATATAATAAATATTTTTA
1 TTATATTAAAAACACTACTATAAATATAATAAATATTTTTA
*
64803509 TTTTATTAAA
1 TTATATTAAA
64803519 TATAATTTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
38 17 0.36
39 15 0.32
40 8 0.17
41 7 0.15
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (41 bp):
TTATATTAAAAACACTACTATAAATATAATAAATATTTTTA
Found at i:64803628 original size:6 final size:6
Alignment explanation
Indices: 64803617--64803658 Score: 84
Period size: 6 Copynumber: 7.0 Consensus size: 6
64803607 TTAGTGATTT
64803617 AATATA AATATA AATATA AATATA AATATA AATATA AATATA
1 AATATA AATATA AATATA AATATA AATATA AATATA AATATA
64803659 TAATCGTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AATATA
Found at i:64821150 original size:42 final size:42
Alignment explanation
Indices: 64821104--64821233 Score: 260
Period size: 42 Copynumber: 3.1 Consensus size: 42
64821094 TGGCAGGTGC
64821104 TGGGGTGCAGACGGTGATGGGCATGCGGGGGGTTTGCTGGTA
1 TGGGGTGCAGACGGTGATGGGCATGCGGGGGGTTTGCTGGTA
64821146 TGGGGTGCAGACGGTGATGGGCATGCGGGGGGTTTGCTGGTA
1 TGGGGTGCAGACGGTGATGGGCATGCGGGGGGTTTGCTGGTA
64821188 TGGGGTGCAGACGGTGATGGGCATGCGGGGGGTTTGCTGGTA
1 TGGGGTGCAGACGGTGATGGGCATGCGGGGGGTTTGCTGGTA
64821230 TGGG
1 TGGG
64821234 CCCGGGCAGA
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.12, C:0.12, G:0.53, T:0.24
Consensus pattern (42 bp):
TGGGGTGCAGACGGTGATGGGCATGCGGGGGGTTTGCTGGTA
Found at i:64821857 original size:132 final size:132
Alignment explanation
Indices: 64821620--64822685 Score: 1817
Period size: 132 Copynumber: 8.1 Consensus size: 132
64821610 CGCCATCGTC
* * * *
64821620 GATCTGCTTTCTTCGATCTTCTTCACCACCAGTACGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* * *
64821685 CTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
64821750 AA
131 AA
*
64821752 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
*
64821817 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAACACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
64821882 AA
131 AA
* *
64821884 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCTTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* *
64821949 TTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
64822014 AA
131 AA
* * * * * *
64822016 GATCTGTTTTCTGCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCGTCGTCGATCTAC
1 GATCTGCTTTCTGCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
*
64822081 TTCCTACCAATATAGGAAGATAAGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
64822146 AA
131 AA
* *
64822148 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCACCTTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* *
64822213 TTCCTACCAATATAGGAAGATAGGATTTGCTACTTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
64822278 AA
131 AA
*
64822280 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* *
64822345 TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
64822410 AA
131 AA
*
64822412 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
*
64822477 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAACACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
64822542 AA
131 AA
*
64822544 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* * * *
64822609 TTCCTGCCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATATATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
64822674 AA
131 AA
*
64822676 GATCTACTTT
1 GATCTGCTTT
64822686 AATGACTTCA
Statistics
Matches: 887, Mismatches: 47, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 887 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (132 bp):
GATCTGCTTTCTGCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
AA
Found at i:64823592 original size:1 final size:1
Alignment explanation
Indices: 64823586--64823610 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
64823576 GGCCTCTCCC
64823586 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
64823611 AGGCAAAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:64836042 original size:43 final size:42
Alignment explanation
Indices: 64835993--64836106 Score: 142
Period size: 42 Copynumber: 2.7 Consensus size: 42
64835983 GCAGAGCAAG
*
64835993 TGGGCATG-GGCGGTGG-TGGCAGGTGCTGGGGTGCAGACGGTGA
1 TGGGCATGCGG-GG-GGTTGGCAGGT-ATGGGGTGCAGACGGTGA
* *
64836036 TGGGCATGCGGGGGGTTTGCTGGTATGGGGTGCAGACGGTGA
1 TGGGCATGCGGGGGGTTGGCAGGTATGGGGTGCAGACGGTGA
* *
64836078 TGGGCATGCGGGGGGTTTGCTGGTATGGG
1 TGGGCATGCGGGGGGTTGGCAGGTATGGG
64836107 CCCGGGCAGA
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
42 48 0.73
43 16 0.24
44 2 0.03
ACGTcount: A:0.11, C:0.12, G:0.54, T:0.23
Consensus pattern (42 bp):
TGGGCATGCGGGGGGTTGGCAGGTATGGGGTGCAGACGGTGA
Found at i:64836065 original size:42 final size:42
Alignment explanation
Indices: 64836019--64836106 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
64836009 TGGCAGGTGC
64836019 TGGGGTGCAGACGGTGATGGGCATGCGGGGGGTTTGCTGGTA
1 TGGGGTGCAGACGGTGATGGGCATGCGGGGGGTTTGCTGGTA
64836061 TGGGGTGCAGACGGTGATGGGCATGCGGGGGGTTTGCTGGTA
1 TGGGGTGCAGACGGTGATGGGCATGCGGGGGGTTTGCTGGTA
64836103 TGGG
1 TGGG
64836107 CCCGGGCAGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.11, C:0.11, G:0.53, T:0.24
Consensus pattern (42 bp):
TGGGGTGCAGACGGTGATGGGCATGCGGGGGGTTTGCTGGTA
Found at i:64837305 original size:3 final size:3
Alignment explanation
Indices: 64837297--64837330 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
64837287 AGATAAGTAG
64837297 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
64837331 GCTAAATAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:64838970 original size:44 final size:43
Alignment explanation
Indices: 64838898--64839539 Score: 357
Period size: 44 Copynumber: 14.8 Consensus size: 43
64838888 ACCTGATGCG
* * * * *
64838898 ATCTACTCTACTGTAA-CTTCAGTGAGATAAGATCCTTTGTTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCC-TAGTTTCA
* * * *
64838942 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TCCTAGTTTCA
* *
64838986 ATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-CTGAAATTCTTCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCT---AGT-TTCA
* * * * * * *
64839032 GTCTGTTCCACTGTAATCTCAGGGAAATAAGA--CTTGGTGCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAGTTTCA
* * * ** * *
64839073 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATTATTGGTTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGA-TCCTAGTTTCA
* * * * *
64839117 ATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TCCTAGTTTCA
* *
64839161 ATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-CTGAAATTCTTCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCT---AGT-TTCA
* * * * *
64839207 GTCTGTTCCACTGTAATCTCAGGGAAATAAGA-CCT-GGTGCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAGTTTCA
* * * * * *
64839248 ATTTACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTGGTTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCC-TAGTTTCA
* * * * * *
64839292 ATCCGCTCCACCGGAATCTCAGGGAGATAGGATTACTAGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TCCTAGTTTCA
* *
64839336 ATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-CTGAAATTCTTCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCT---AGT-TTCA
* * * * * *
64839382 GTCTGTTCCACTGTAATCTCAGGGAAATAAGA-CCT-GGTGCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAGTTTCA
* * *
64839423 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCC---TTT-A
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCCTAGTTTCA
* * *
64839462 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA-TATTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TCCTAGT-TTCA
**
64839506 ATCTGCTCCGTTGTAATCTCAGGGAGATAAGATC
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATC
64839540 TGAAATTCTT
Statistics
Matches: 452, Mismatches: 111, Indels: 71
0.71 0.18 0.11
Matches are distributed among these distances:
39 25 0.06
40 7 0.02
41 79 0.17
42 11 0.02
43 7 0.02
44 212 0.47
45 11 0.02
46 100 0.22
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (43 bp):
ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAGTTTCA
Found at i:64839154 original size:175 final size:175
Alignment explanation
Indices: 64838863--64839583 Score: 1200
Period size: 175 Copynumber: 4.1 Consensus size: 175
64838853 TTCAATGTAC
* * ** * * *
64838863 TCCACTGTAACCACAGGGAGGTAAAACCTGATGCGATCTACTCTACTGTAACTTCAGTGAGATAA
1 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAA
* *
64838928 GATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCT
66 GATCATTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCT
64838993 CCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGT
131 CCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGT
*
64839038 TCCACTGTAATCTCAGGGAAATAAGACTTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAA
1 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAA
* *
64839103 GATTATTGGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCT
66 GATCATTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCT
64839168 CCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGT
131 CCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGT
* *
64839213 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCAATTTACTCTACTGTAACTTCAGAGAGATAA
1 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAA
* * *
64839278 GATCCTTGGTTTTAATCCGCTCCACCGGAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCT
66 GATCATTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCT
64839343 CCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGT
131 CCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGT
64839388 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAA
1 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAA
* **
64839453 GATC-----CTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCT
66 GATCATTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCT
**
64839513 CCGTTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGT
131 CCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGT
*
64839558 TCCACCGTAATCTCAGGGAAATAAGA
1 TCCACTGTAATCTCAGGGAAATAAGA
64839584 TCTGTATAAT
Statistics
Matches: 516, Mismatches: 30, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
170 119 0.23
175 397 0.77
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (175 bp):
TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAA
GATCATTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCT
CCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGT
Found at i:64839261 original size:131 final size:129
Alignment explanation
Indices: 64839126--64839367 Score: 274
Period size: 131 Copynumber: 1.9 Consensus size: 129
64839116 AATCCGCTCC
* * * * *
64839126 ACTGTAA-TATCAGGGAGATAGGATTAC-TAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGAT
1 ACTGTAACT-TCAGAGAGATAAGA-TACTTAGCTTCAATCCGCTCCACCGGAATCTCAGGGAGAT
* ** *
64839189 AAGATCTGAA-ATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCAATTTA
64 AAGAT-T-AATA-GCTTCAATCTGCTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCAATTTA
64839253 CTCT
126 CTCT
* * * * *
64839257 ACTGTAACTTCAGAGAGATAAGATCCTTGGTTTTAATCCGCTCCACCGGAATCTCAGGGAGATAG
1 ACTGTAACTTCAGAGAGATAAGATACTTAGCTTCAATCCGCTCCACCGGAATCTCAGGGAGATAA
* *
64839322 GATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGA
66 GATTAATAGCTTCAATCTGCTCCACTGTAATCTCAGGGAAATAAGA
64839368 TCTGAAATTC
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
129 34 0.37
130 4 0.04
131 53 0.58
132 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (129 bp):
ACTGTAACTTCAGAGAGATAAGATACTTAGCTTCAATCCGCTCCACCGGAATCTCAGGGAGATAA
GATTAATAGCTTCAATCTGCTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCAATTTACTCT
Found at i:64840627 original size:21 final size:21
Alignment explanation
Indices: 64840601--64840647 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
64840591 GGTATAGCAA
64840601 GATCACCACATGCCCCAATCT
1 GATCACCACATGCCCCAATCT
** * *
64840622 GATCACTTCATGCCCTATTCT
1 GATCACCACATGCCCCAATCT
64840643 GATCA
1 GATCA
64840648 ATATTTTAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.36, G:0.11, T:0.28
Consensus pattern (21 bp):
GATCACCACATGCCCCAATCT
Found at i:64840757 original size:15 final size:14
Alignment explanation
Indices: 64840730--64840771 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 14
64840720 TTAGCCTCTC
64840730 CATTTTTACTTTTT
1 CATTTTTACTTTTT
*
64840744 CATTTTTTCATTTTT
1 CATTTTTAC-TTTTT
*
64840759 CATCTTT-CTTTTT
1 CATTTTTACTTTTT
64840772 TTTAACTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 5 0.20
14 9 0.36
15 11 0.44
ACGTcount: A:0.12, C:0.17, G:0.00, T:0.71
Consensus pattern (14 bp):
CATTTTTACTTTTT
Found at i:64841647 original size:10 final size:11
Alignment explanation
Indices: 64841629--64841656 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
64841619 AATTTTTTAA
64841629 TTTTTTTTTGT
1 TTTTTTTTTGT
64841640 TTTTTTTTTGT
1 TTTTTTTTTGT
64841651 TTTTTT
1 TTTTTT
64841657 GAGTCTGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (11 bp):
TTTTTTTTTGT
Found at i:64845467 original size:3 final size:3
Alignment explanation
Indices: 64845456--64845557 Score: 168
Period size: 3 Copynumber: 34.0 Consensus size: 3
64845446 CAATAATACC
* * * *
64845456 AAT ACT AAT AAT AAT AAT AAT CAT AAT AAT GAT AAT AAT AAT ACT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
64845504 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
64845552 AAT AAT
1 AAT AAT
64845558 GATAGATGAT
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 91 1.00
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:64847436 original size:175 final size:175
Alignment explanation
Indices: 64847228--64847550 Score: 497
Period size: 175 Copynumber: 1.8 Consensus size: 175
64847218 CACTACAACC
* *
64847228 TCAGTGAGATAAGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGAT-CTATTACT
1 TCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCCT-TTACT
* *
64847292 TTAATCCGCTCCACTATAA-TCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAAT
65 TTAATCCGCTCCACTATAACT-TCAGGGAGATAGGACTACTAGCTTCAATCTACTCCGCTGTAAT
*
64847356 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAACT
129 CTCAGAGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAACT
* * * * *
64847403 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGATAGTTAAGATCCTTTATTT
1 TCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCCTTTACTT
* * *
64847468 TAATCTGCTCCACTGTAACTTCAGGGAGATAGGACTACTAGCTTTAATCTACTCCGCTGTAATCT
66 TAATCCGCTCCACTATAACTTCAGGGAGATAGGACTACTAGCTTCAATCTACTCCGCTGTAATCT
64847533 CAGAGAGATAAGATCTGA
131 CAGAGAGATAAGATCTGA
64847551 CACGATCTAC
Statistics
Matches: 133, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
175 130 0.98
176 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (175 bp):
TCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCCTTTACTT
TAATCCGCTCCACTATAACTTCAGGGAGATAGGACTACTAGCTTCAATCTACTCCGCTGTAATCT
CAGAGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAACT
Found at i:64847514 original size:44 final size:43
Alignment explanation
Indices: 64847469--64848200 Score: 293
Period size: 44 Copynumber: 16.8 Consensus size: 43
64847459 CCTTTATTTT
* *
64847469 AATCTGCTCCACTGTAA-CTTCAGGGAGATAGGACTACTAGCTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACTACTA-CTTC
* * * *
64847513 AATCTACTCCGCTGTAATCTCAGAGAGATAAGA-T-CTGAC-AC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTACT-ACTTC
* * * * * * *
64847554 GATCTACTCTACTGTAA-CTTTAGAGAGATAAGA-TACTTTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACTAC--TACTTC
** * *
64847598 AATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTACTA-CTTC
* * *
64847642 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-CT--ACTACTTC
** * * *
64847688 GGTCTGTTCCACTGTAATCTCAGGGAAATAAGAC--CTGAC-GC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTACT-ACTTC
* * * * * * *
64847729 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTCATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGACTAC-T-ACTTC
** * *
64847773 AATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTACT-ACTTC
* * *
64847817 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTA-TTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-CT---ACTACTTC
** * * * *
64847863 GGTCTGTTCTACTGTAATCTCAGGGAAATAAGAC--CTGACGT-
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTACT-ACTTC
* ** * * * * *
64847904 AATCTACTCTGCTGTAA-CTTCAGAGAGATAAGGTCCT-CCATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAA-G-ACTACTACTTC
** * * *
64847948 AATCCACTCCAATGTAATCTCAGGGAGATAGGATTACTAACTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTACT-ACTTC
* *
64847992 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGA-T-CTGAC-AC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTACT-ACTTC
* * * * ** * * *
64848033 GATCTACTCTACTGTAA-CTTTAAAGAGATAAGATCCT-TTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGA--CTACTACTTC
* * *
64848077 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTACTA-CTTC
* * * *
64848121 AATCTGCTCCGCTGTAATCTCAGGGAGATATGATCTGAAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-CT--ACTACTTC
** * * *
64848167 GGTCTGTTCCATTGTAATCTCAGGGAAATAAGAC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAC
64848201 CTAACGCGAT
Statistics
Matches: 508, Mismatches: 134, Indels: 91
0.69 0.18 0.12
Matches are distributed among these distances:
40 5 0.01
41 103 0.20
42 14 0.03
43 16 0.03
44 256 0.50
45 16 0.03
46 91 0.18
47 5 0.01
48 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (43 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGACTACTACTTC
Found at i:64847568 original size:85 final size:86
Alignment explanation
Indices: 64847299--64847802 Score: 280
Period size: 85 Copynumber: 5.8 Consensus size: 86
64847289 ACTTTAATCC
* * * * * *
64847299 GCTCCACTATAA-TCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGG
1 GCTCCACTGTAACT-TCAGGGAGATAAGACTACTAGCTTCAATCTACTCCACTGTAATCTCAGAG
*
64847363 AGATAAGATCTGAAATTCTTCGGTCT
65 AGATAAGATCTG--A-TC-TCGATCT
* * * * *
64847389 GCTCCACTGTAACTTCAGGGAGATAAGAC--CT-GATGCGATCTACTCTACTGTAA-CTTCAGAT
1 GCTCCACTGTAACTTCAGGGAGATAAGACTACTAGCTTCAATCTACTCCACTGTAATC-TCAGAG
* * * **
64847450 AGTTAAGATCCTTTATTTTAATCT
65 AGATAAGAT-C-TGATCTCGATCT
* * *
64847474 GCTCCACTGTAACTTCAGGGAGATAGGACTACTAGCTTTAATCTACTCCGCTGTAATCTCAGAGA
1 GCTCCACTGTAACTTCAGGGAGATAAGACTACTAGCTTCAATCTACTCCACTGTAATCTCAGAGA
*
64847539 GATAAGATCTGA-CACGATCT
66 GATAAGATCTGATCTCGATCT
* * * * * * * *
64847559 ACTCTACTGTAACTTTAGAGAGATAAGA-TACTTTA-TTTTAATCCACTCCACTGTAATCTCAGG
1 GCTCCACTGTAACTTCAGGGAGATAAGACTAC--TAGCTTCAATCTACTCCACTGTAATCTCAGA
* * *
64847622 GAGATAGGATTACT-AGCTTCAATCT
64 GAGATAAGA-T-CTGATC-TCGATCT
* * * ** **
64847647 GCTCCGCTGTAA-TCTCAGGGAGATAAGATCTGA-AATTCTTCGGTCTGTTCCACTGTAATCTCA
1 GCTCCACTGTAACT-TCAGGGAGATAAGA-CT-ACTA-GCTTCAATCTACTCCACTGTAATCTCA
* * * *
64847710 GGGAAATAAGACCTGA-CGCGATCT
62 GAGAGATAAGATCTGATCTCGATCT
* * * * * * * *
64847734 ACTCTACTGTAACTTCAGAGAGATAAGA-TCCTTCA-TTTTAATCCACTCCACTGTAATCTCAGG
1 GCTCCACTGTAACTTCAGGGAGATAAGACTAC-T-AGCTTCAATCTACTCCACTGTAATCTCAGA
64847797 GAGATA
64 GAGATA
64847803 GGATTACTAA
Statistics
Matches: 314, Mismatches: 75, Indels: 55
0.71 0.17 0.12
Matches are distributed among these distances:
84 3 0.01
85 118 0.38
86 8 0.03
87 64 0.20
88 63 0.20
89 3 0.01
90 53 0.17
91 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (86 bp):
GCTCCACTGTAACTTCAGGGAGATAAGACTACTAGCTTCAATCTACTCCACTGTAATCTCAGAGA
GATAAGATCTGATCTCGATCT
Found at i:64847570 original size:129 final size:129
Alignment explanation
Indices: 64847390--64847679 Score: 422
Period size: 129 Copynumber: 2.2 Consensus size: 129
64847380 CTTCGGTCTG
* * ** * *
64847390 CTCCACTGTAA-CTTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGATAGTT
1 CTCCGCTGTAATC-TCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAGAT
* ** *
64847454 AAGATCCTTTATTTTAATCTGCTCCACTGTAA-CTTCAGGGAGATAGGACTACTAGCTTTAATCT
65 AAGATACTTTATTTTAATCCACTCCACTGTAATC-TCAGGGAGATAGGACTACTAGCTTCAATCT
64847518 A
129 A
* *
64847519 CTCCGCTGTAATCTCAGAGAGATAAGATCTGACACGATCTACTCTACTGTAACTTTAGAGAGATA
1 CTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAGATA
* *
64847584 AGATACTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
66 AGATACTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGACTACTAGCTTCAATCTA
64847648 CTCCGCTGTAATCTCAGGGAGATAAGATCTGA
1 CTCCGCTGTAATCTCAGGGAGATAAGATCTGA
64847680 AATTCTTCGG
Statistics
Matches: 144, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
129 142 0.99
130 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (129 bp):
CTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAGATA
AGATACTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGACTACTAGCTTCAATCTA
Found at i:64847705 original size:175 final size:175
Alignment explanation
Indices: 64847524--64848029 Score: 859
Period size: 175 Copynumber: 2.9 Consensus size: 175
64847514 ATCTACTCCG
* * * * * *
64847524 CTGTAATCTCAGAGAGATAAGATCTGACACGATCTACTCTACTGTAACTTTAGAGAGATAAGATA
1 CTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
64847589 CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGC
66 CTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGC
*
64847654 TGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCA
131 TGTAATCTCAGGGAGATAAGATCTGAAATTATTCGGTCTGTTCCA
64847699 CTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
*
64847764 CTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCGC
66 CTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGC
*
64847829 TGTAATCTCAGGGAGATAAGATCTGAAATTATTCGGTCTGTTCTA
131 TGTAATCTCAGGGAGATAAGATCTGAAATTATTCGGTCTGTTCCA
** * *
64847874 CTGTAATCTCAGGGAAATAAGACCTGACGTAATCTACTCTGCTGTAACTTCAGAGAGATAAGGTC
1 CTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
64847939 CTCCATTTTAATCCACTCCAATGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGC
66 CTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGC
64848004 TGTAATCTCAGGGAGATAAGATCTGA
131 TGTAATCTCAGGGAGATAAGATCTGA
64848030 CACGATCTAC
Statistics
Matches: 313, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
175 313 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (175 bp):
CTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
CTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGC
TGTAATCTCAGGGAGATAAGATCTGAAATTATTCGGTCTGTTCCA
Found at i:64847785 original size:304 final size:303
Alignment explanation
Indices: 64847127--64848158 Score: 1144
Period size: 304 Copynumber: 3.4 Consensus size: 303
64847117 TTAATCTGAC
* * * * * *
64847127 CTACTGCAACTTCGGAG-GTATAAGATTCATCATTTTAATCCACTCATACTGCAA-CTTCAGGGA
1 CTACTGTAACTTCAGAGAG-ATAAGATCCTTCATTTTAATCCACTC-CACTGTAATC-TCAGGGA
* * * * * ** * * *
64847190 GATAGGATTAGTTATCTTCAGTATACTACACTACAACCTCAGTGAGATAAGA-CTTGATGCGATC
63 GATAGGATTA-CTATCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATC-TGATACGATC
* * * *
64847254 CACTCTACTGCAACTTCAGAGAGATAAGAT-CTATTACTTTAATCCGCTCCACTATAATCTCAGG
126 TACTCTACTGTAACTTCAGAGAGATAAGATACT-TTA-TTTAATCCACTCCACTGTAATCTCAGG
64847318 GAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTT
189 GAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTT
*
64847383 CGGTCTGCTCCACTGTAA-CTTCAGGGAGATAAGACCTGATGCGATCTACT
254 CGGTCTGCTCCACTGTAATC-TCAGGGAGATAAGACCTGACGCGATCTACT
* * * **
64847433 CTACTGTAACTTCAGATAGTTAAGATCCTTTATTTTAATCTGCTCCACTGTAA-CTTCAGGGAGA
1 CTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATC-TCAGGGAGA
* * * * *
64847497 TAGGACTACTAGCTTTAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTGACACGATCTACT
65 TAGGATTACTATCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGATACGATCTACT
*
64847562 CTACTGTAACTTTAGAGAGATAAGATACTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGAT
130 CTACTGTAACTTCAGAGAGATAAGATACTTTA-TTTAATCCACTCCACTGTAATCTCAGGGAGAT
64847627 AGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTC
194 AGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTC
* *
64847692 TGTTCCACTGTAATCTCAGGGAAATAAGACCTGACGCGATCTACT
259 TGCTCCACTGTAATCTCAGGGAGATAAGACCTGACGCGATCTACT
64847737 CTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGAT
1 CTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGAT
* *
64847802 AGGATTACTAACTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTATTCGGTC
66 AGGATTACTATCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTG--A-TA--CGATC
** * * * * ** * ** *
64847867 TGTTCTACTGTAA-TCTCAGGGAAATAAG--ACCTGACGTAATCTACTCTGCTGTAA-CTTCAGA
126 TACTCTACTGTAACT-TCAGAGAGATAAGATACTTTATTTAATCCACTCCACTGTAATC-TCAGG
* * * ** ** *
64847928 GAGATAAGG-TCCT-CCA-TTTTAATCCACTCCAATGTAATCTCAGGGAGATAGGAT-T-ACTAA
189 GAGAT-AGGAT--TACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA--AA
** * * *
64847988 --CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACT
249 TTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGACGCGATCTACT
* * * *
64848041 CTACTGTAACTTTAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGAT
1 CTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGAT
* *
64848106 AGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATATGATCTGA
66 AGGATTACTATCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGA
64848159 AATTCTTCGG
Statistics
Matches: 629, Mismatches: 80, Indels: 38
0.84 0.11 0.05
Matches are distributed among these distances:
302 1 0.00
304 466 0.74
305 31 0.05
306 93 0.15
307 11 0.02
308 2 0.00
309 25 0.04
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (303 bp):
CTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGAT
AGGATTACTATCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGATACGATCTACTC
TACTGTAACTTCAGAGAGATAAGATACTTTATTTAATCCACTCCACTGTAATCTCAGGGAGATAG
GATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTG
CTCCACTGTAATCTCAGGGAGATAAGACCTGACGCGATCTACT
Found at i:64847932 original size:87 final size:86
Alignment explanation
Indices: 64847642--64847935 Score: 299
Period size: 87 Copynumber: 3.4 Consensus size: 86
64847632 TACTAGCTTC
* *
64847642 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATC
1 AATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTGAAATT-TTCGGTCTGTTCCACTGTAATC
*
64847707 TCAGGGAAATAAGACCTGACGC
65 TCAGGGAAATAAGACCTGACGT
* ** ** ** ***
64847729 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TCATTTT-AATCCACTCCACTGTAAT
1 AATCTACTCCGCTGTAATC-TCAGAGAGATAAGAT-CTGAAATTTTCGGTCTGTTCCACTGTAAT
* * * * *
64847791 CTCAGGGAGATAGGATTACTAACTT
64 CTCAGGGAAATAAGA--CCTGACGT
* *
64847816 CAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTATTCGGTCTGTTCTACTGTAAT
1 -AATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTGAAATT-TTCGGTCTGTTCCACTGTAAT
64847881 CTCAGGGAAATAAGACCTGACGT
64 CTCAGGGAAATAAGACCTGACGT
*
64847904 AATCTACTCTGCTGTAA-CTTCAGAGAGATAAG
1 AATCTACTCCGCTGTAATC-TCAGAGAGATAAG
64847936 GTCCTCCATT
Statistics
Matches: 160, Mismatches: 37, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
85 26 0.16
86 4 0.03
87 64 0.40
88 38 0.24
89 3 0.02
90 25 0.16
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (86 bp):
AATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTGAAATTTTCGGTCTGTTCCACTGTAATCT
CAGGGAAATAAGACCTGACGT
Found at i:64848013 original size:479 final size:479
Alignment explanation
Indices: 64847227--64848245 Score: 1612
Period size: 479 Copynumber: 2.1 Consensus size: 479
64847217 ACACTACAAC
* * * * * * *
64847227 CTCAGTGAGATAAGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGAT-CTATTAC
1 CTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TCAC
* * *
64847291 TTTAATCCGCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAAT
65 TTTAATCCACTCCACTATAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCGCTGTAAT
* *
64847356 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAACTTCAGGGAGATAAGACCTG
130 CTCAGGGAGATAAGATCTGAAATTATTCGGTCTGCTCCACTGTAACTTCAGGGAAATAAGACCTG
* * * * ** ** *
64847421 ATGCGATCTACTCTACTGTAACTTCAGATAGTTAAGATCCTTTATTTTAATCTGCTCCACTGTAA
195 ACGCAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTCCATTTTAATCCACTCCAATGTAA
* *
64847486 CTTCAGGGAGATAGGACTACTAGCTTTAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTGA
260 CTTCAGGGAGATAGGACTACTAACTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTGA
*
64847551 CACGATCTACTCTACTGTAACTTTAGAGAGATAAGATACTTTATTTTAATCCACTCCACTGTAAT
325 CACGATCTACTCTACTGTAACTTTAAAGAGATAAGATACTTTATTTTAATCCACTCCACTGTAAT
64847616 CTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAA
390 CTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAA
64847681 ATTCTTCGGTCTGTTCCACTGTAAT
455 ATTCTTCGGTCTGTTCCACTGTAAT
*
64847706 CTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATT
1 CTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCACT
*
64847771 TTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCGCTGTAATC
66 TTAATCCACTCCACTATAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCGCTGTAATC
* *
64847836 TCAGGGAGATAAGATCTGAAATTATTCGGTCTGTTCTACTGTAA-TCTCAGGGAAATAAGACCTG
131 TCAGGGAGATAAGATCTGAAATTATTCGGTCTGCTCCACTGTAACT-TCAGGGAAATAAGACCTG
* * *
64847900 ACGTAATCTACTCTGCTGTAACTTCAGAGAGATAAGGTCCTCCATTTTAATCCACTCCAATGTAA
195 ACGCAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTCCATTTTAATCCACTCCAATGTAA
* * *
64847965 -TCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTG
260 CT-TCAGGGAGATAGGACTACTAACTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTG
* *
64848029 ACACGATCTACTCTACTGTAACTTTAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA
324 ACACGATCTACTCTACTGTAACTTTAAAGAGATAAGATACTTTATTTTAATCCACTCCACTGTAA
* *
64848094 TCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATATGATCTGA
389 TCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
*
64848159 AATTCTTCGGTCTGTTCCATTGTAAT
454 AATTCTTCGGTCTGTTCCACTGTAAT
* * *
64848185 CTCAGGGAAATAAGACCTAACGCGATCTATTCTGCTGTAACTTCAGAGAGATAAGATCCTT
1 CTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT
64848246 TCTTCAATCA
Statistics
Matches: 495, Mismatches: 42, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
478 2 0.00
479 491 0.99
480 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (479 bp):
CTCAGGGAAATAAGACCTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCACT
TTAATCCACTCCACTATAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCGCTGTAATC
TCAGGGAGATAAGATCTGAAATTATTCGGTCTGCTCCACTGTAACTTCAGGGAAATAAGACCTGA
CGCAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTCCATTTTAATCCACTCCAATGTAAC
TTCAGGGAGATAGGACTACTAACTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTGAC
ACGATCTACTCTACTGTAACTTTAAAGAGATAAGATACTTTATTTTAATCCACTCCACTGTAATC
TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAA
TTCTTCGGTCTGTTCCACTGTAAT
Found at i:64848042 original size:129 final size:129
Alignment explanation
Indices: 64847874--64848158 Score: 435
Period size: 129 Copynumber: 2.2 Consensus size: 129
64847864 GTCTGTTCTA
* * ** * * *
64847874 CTGTAATCTCAGGGAAATAAGACCTGACGTAATCTACTCTGCTGTAACTTCAGAGAGATAAGGTC
1 CTGTAATCTCAGGGAGATAAGATCTGACACAATCTACTCTACTGTAACTTCAAAGAGATAAGATC
64847939 CTCCATTTTAATCCACTCCAATGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCG
66 CTCCATTTTAATCCACTCCAATGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCG
* *
64848003 CTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTTAAAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGATCTGACACAATCTACTCTACTGTAACTTCAAAGAGATAAGATC
** * * *
64848068 CTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
66 CTCCATTTTAATCCACTCCAATGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCG
*
64848132 CTGTAATCTCAGGGAGATATGATCTGA
1 CTGTAATCTCAGGGAGATAAGATCTGA
64848159 AATTCTTCGG
Statistics
Matches: 141, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
129 141 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (129 bp):
CTGTAATCTCAGGGAGATAAGATCTGACACAATCTACTCTACTGTAACTTCAAAGAGATAAGATC
CTCCATTTTAATCCACTCCAATGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCG
Found at i:64848396 original size:87 final size:87
Alignment explanation
Indices: 64848246--64848477 Score: 277
Period size: 87 Copynumber: 2.7 Consensus size: 87
64848236 TAAGATCCTT
* ** * * * *
64848246 TCTTCAATCAACTTCACTGCAACCGATAAAGGCAAGGCTTTGTTTTCGATTTGCTTTGTTGTTAA
1 TCTTCAATCAACTCCACTGCAACCGATGGAGACAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAA
**
64848311 CGCAGGAAGGCAAGATCTGCTA
66 CGCAGGAAGGCAAGATCAACTA
* *
64848333 TCTTCAATCAACTCCACTACAACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTCGCTGTTAA
1 TCTTCAATCAACTCCACTGCAACCGATGGAGACAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAA
*
64848398 CGCAGGAAGGCCAGATCAACTA
66 CGCAGGAAGGCAAGATCAACTA
* ** * * *
64848420 TCTTCAACCAGTTCCACCGCAACCGATGGAGTCAAAGC-TTGTATCTTCGATCTGCTTC
1 TCTTCAATCAACTCCACTGCAACCGATGGAGACAAGGCTTTGT-T-TTCGATCTGCTTC
64848478 ACTATCAAGG
Statistics
Matches: 123, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
86 4 0.03
87 107 0.87
88 12 0.10
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (87 bp):
TCTTCAATCAACTCCACTGCAACCGATGGAGACAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAA
CGCAGGAAGGCAAGATCAACTA
Found at i:64849662 original size:21 final size:21
Alignment explanation
Indices: 64849636--64849682 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
64849626 GGTATAGCAA
64849636 GATCACCACATGCCCCAATCT
1 GATCACCACATGCCCCAATCT
** *
64849657 GATCACTTCATGCCCCATTCT
1 GATCACCACATGCCCCAATCT
64849678 GATCA
1 GATCA
64849683 ATATTTGAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.38, G:0.11, T:0.26
Consensus pattern (21 bp):
GATCACCACATGCCCCAATCT
Found at i:64849788 original size:9 final size:9
Alignment explanation
Indices: 64849774--64849816 Score: 59
Period size: 9 Copynumber: 4.6 Consensus size: 9
64849764 CCATTTTTAC
64849774 TTTTTCATT
1 TTTTTCATT
64849783 TTTTTCATTT
1 TTTTTCA-TT
64849793 TTTATTCATT
1 TTT-TTCATT
*
64849803 TTATTCATT
1 TTTTTCATT
64849812 TTTTT
1 TTTTT
64849817 GTTTGACTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 17 0.57
10 9 0.30
11 4 0.13
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTCATT
Found at i:64849802 original size:20 final size:20
Alignment explanation
Indices: 64849777--64849815 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
64849767 TTTTTACTTT
*
64849777 TTCATTTTTTTCATTTTTTA
1 TTCATTTTATTCATTTTTTA
64849797 TTCATTTTATTCATTTTTT
1 TTCATTTTATTCATTTTTT
64849816 TGTTTGACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.74
Consensus pattern (20 bp):
TTCATTTTATTCATTTTTTA
Found at i:64851559 original size:18 final size:18
Alignment explanation
Indices: 64851518--64851566 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
64851508 CGTTCAGACT
64851518 AAAAAAAAT-AAAAAAGA
1 AAAAAAAATCAAAAAAGA
* *
64851535 ATTAAAAAATCAAAAAATA
1 A-AAAAAAATCAAAAAAGA
64851554 AAAAAAAATCAAA
1 AAAAAAAATCAAA
64851567 GTCAAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 1 0.04
18 18 0.67
19 8 0.30
ACGTcount: A:0.82, C:0.04, G:0.02, T:0.12
Consensus pattern (18 bp):
AAAAAAAATCAAAAAAGA
Found at i:64851591 original size:7 final size:7
Alignment explanation
Indices: 64851581--64851614 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
64851571 AAAATAGAAA
64851581 AAAAAAG
1 AAAAAAG
64851588 AAAAAAG
1 AAAAAAG
64851595 -AAAAAG
1 AAAAAAG
64851601 -AAAAAG
1 AAAAAAG
64851607 AAAAAAG
1 AAAAAAG
64851614 A
1 A
64851615 GAGGTCAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.46
7 14 0.54
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:64851604 original size:19 final size:18
Alignment explanation
Indices: 64851578--64851614 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
64851568 TCAAAAATAG
64851578 AAAAAAAAAGAAAAAAGA
1 AAAAAAAAAGAAAAAAGA
64851596 AAAAGAAAAAGAAAAAAGA
1 AAAA-AAAAAGAAAAAAGA
64851615 GAGGTCAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAGAAAAAAGA
Found at i:64852426 original size:9 final size:10
Alignment explanation
Indices: 64852412--64852455 Score: 56
Period size: 9 Copynumber: 4.4 Consensus size: 10
64852402 TGAGTCAAAC
64852412 AAAAAAAT-A
1 AAAAAAATGA
64852421 AAAAAAATGA
1 AAAAAAATGA
64852431 ATGAAAAAATG-
1 A--AAAAAATGA
64852442 AAAAAAATGA
1 AAAAAAATGA
64852452 AAAA
1 AAAA
64852456 GTAGAAATGG
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
9 16 0.52
10 6 0.19
11 1 0.03
12 8 0.26
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (10 bp):
AAAAAAATGA
Found at i:64852439 original size:21 final size:21
Alignment explanation
Indices: 64852413--64852452 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
64852403 GAGTCAAACA
64852413 AAAAAATAAAAAAAATGAATG
1 AAAAAATAAAAAAAATGAATG
*
64852434 AAAAAATGAAAAAAATGAA
1 AAAAAATAAAAAAAATGAA
64852453 AAAGTAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (21 bp):
AAAAAATAAAAAAAATGAATG
Found at i:64853894 original size:87 final size:87
Alignment explanation
Indices: 64853752--64853983 Score: 304
Period size: 87 Copynumber: 2.7 Consensus size: 87
64853742 CCTTGATAGT
* * ** * *
64853752 GAAGCAGATCGAAGATAC-AAGCTTTGACTCCATCGGTTGCGGTGGAACTGGTTGAAGATAGCTG
1 GAAGCAGATCGAA-A-ACAAAGCCTTGACTCCATCGGTTGCAGTGGAGTTGATTGAAGATAGCAG
64853816 ATCTGGCCTTCCTGCGTTAACAAC
64 ATCTGGCCTTCCTGCGTTAACAAC
* * *
64853840 GAAGCAGATTGAAAACAAAGCCTTGTCTCCATCGGTTGTAGTGGAGTTGATTGAAGATAGCAGAT
1 GAAGCAGATCGAAAACAAAGCCTTGACTCCATCGGTTGCAGTGGAGTTGATTGAAGATAGCAGAT
*
64853905 CTTGCCTTCCTGCGTTAACAAC
66 CTGGCCTTCCTGCGTTAACAAC
* * * * *
64853927 AAAGCAGATCAAAAACAAAGCCTTGCCTCTATCGGTTGCAGTGAAGTTGATTGAAGA
1 GAAGCAGATCGAAAACAAAGCCTTGACTCCATCGGTTGCAGTGGAGTTGATTGAAGA
64853984 AAGGATCTTA
Statistics
Matches: 126, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
86 2 0.02
87 112 0.89
88 12 0.10
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (87 bp):
GAAGCAGATCGAAAACAAAGCCTTGACTCCATCGGTTGCAGTGGAGTTGATTGAAGATAGCAGAT
CTGGCCTTCCTGCGTTAACAAC
Found at i:64854113 original size:46 final size:44
Alignment explanation
Indices: 64854079--64854275 Score: 138
Period size: 44 Copynumber: 4.5 Consensus size: 44
64854069 TTTCAGATCT
*
64854079 TACCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCC
1 TACCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAATCC
* * * * *
64854123 TATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAAG-GATCT
1 TACCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT--AGTAATCC
* ** * * * * *
64854167 TATCTCTTTGA-AGTTACAGTAGAGTAGATCG-TG-TCAG--ATCT
1 TACCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGTAATCC
* * *
64854208 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCC
1 TACCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAATCC
* *
64854252 TATCTCCCTGAGATTACATTGGAG
1 TACCTCCCTGAGATTACAGTGGAG
64854276 TGGATTAAAA
Statistics
Matches: 119, Mismatches: 25, Indels: 18
0.73 0.15 0.11
Matches are distributed among these distances:
41 27 0.23
42 6 0.05
43 7 0.06
44 77 0.65
45 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
TACCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAATCC
Found at i:64854221 original size:129 final size:129
Alignment explanation
Indices: 64854071--64854355 Score: 471
Period size: 129 Copynumber: 2.2 Consensus size: 129
64854061 CCGAAGAATT
*
64854071 TCAGATCTTACCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
* * * *
64854136 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGTG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAAAGTAGATCGCG
*
64854200 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
* * *
64854265 TTACATTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAAAGTAGATCGCG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAAAGTAGATCGCG
* *
64854329 TCAGGTCTTATTTCCCTGAGATTACAG
1 TCAGATCTTATCTCCCTGAGATTACAG
64854356 TAGAACAGAC
Statistics
Matches: 145, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
129 145 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (129 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAAAGTAGATCGCG
Found at i:64854366 original size:304 final size:302
Alignment explanation
Indices: 64853975--64854896 Score: 1085
Period size: 304 Copynumber: 3.0 Consensus size: 302
64853965 CAGTGAAGTT
* *
64853975 GATTGAAGAAAGGATCTTATCTCTCTGAAGTTACAGCAGAA-TAGATCGCGTCAGGTCTTATTTC
1 GATTAAAGCAAGGATCTTATCTCTCTGAAGTTACAGCA-AAGTAGATCGCGTCAGGTCTTATTTC
* * *
64854039 CCTGAGATTACAATGGAACAGACCGAAGAATTTCAGATCTTACCTCCCTGAGATTACAGCGGAGC
65 CCTGAGATTACAGTAGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGC
64854104 AGATTGAAGATAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTA
130 AGATTGAAGATAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTA
* * * *
64854169 TCTCTTTGAAGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCA
195 TCTCTCTGAAGTTACAGTAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGATTACAGTGGAGCA
** ** **
64854234 GATTGAAGTT-AG-TAATCCTATCTCCCTGAGATTACATTGGAGTG
260 GAAAGAAGTTCAGAT-AT--TATCTCCCTGAGATTACAGCGGAGCA
64854278 GATTAAAATG-AAGGATCTTATCTCTCTGAAGTTACAGCAAAGTAGATCGCGTCAGGTCTTATTT
1 GATT-AAA-GCAAGGATCTTATCTCTCTGAAGTTACAGCAAAGTAGATCGCGTCAGGTCTTATTT
64854342 CCCTGAGATTACAGTAGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAG
64 CCCTGAGATTACAGTAGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAG
* * * *
64854407 TAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAAGGATCTT
129 CAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTT
* * *
64854472 ATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTGGAAC
194 ATCTCTCTGAAGTTACAGTAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGATTACAGTGGAGC
* * *
64854537 AGACCAAAGAATTTCAGATATTATCTTCTTGAGATTACAGCGGAGCA
259 AG---AAAGAAGTTCAGATATTATCTCCCTGAGATTACAGCGGAGCA
* * * * * *** ** **** *
64854584 GATTGAAGCTAGTAATCCTATCTCCCTG-AGATTACAGTGGAGCGGATTAAAATAAAGGATCTTA
1 GATTAAAGCAAG-GATCTTATCTCTCTGAAG-TTACAGCAAAGTAGA-TCGCGT-CAGG-TCTTA
* * * ** * *
64854648 TCTCTCT-AAAGTTACAGTAGAGTAGATC---G--TGTCAGATCTTATCTCCCTGAGATTACAGC
61 TTTCCCTGAGA-TTACAGTAGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGC
* *
64854707 GGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAAATAAAGG
125 GGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA-TTACAGTGGAGCGGATTAAAATAAAGG
* * * *
64854771 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATTAGGTCTTATCTCCCTCAGGTTACAGT
189 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGATTACAGT
* *
64854836 GGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCA
254 GGAGCAGA---AAGAAGTTCAGATATTATCTCCCTGAGATTACAGCGGAGCA
*
64854888 GATTGAAGC
1 GATTAAAGC
64854897 TAGTAATCCT
Statistics
Matches: 539, Mismatches: 61, Indels: 37
0.85 0.10 0.06
Matches are distributed among these distances:
301 1 0.00
303 7 0.01
304 435 0.81
305 7 0.01
306 47 0.09
307 8 0.01
308 9 0.02
309 25 0.05
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (302 bp):
GATTAAAGCAAGGATCTTATCTCTCTGAAGTTACAGCAAAGTAGATCGCGTCAGGTCTTATTTCC
CTGAGATTACAGTAGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCA
GATTGAAGATAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTAT
CTCTCTGAAGTTACAGTAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGATTACAGTGGAGCAG
AAAGAAGTTCAGATATTATCTCCCTGAGATTACAGCGGAGCA
Found at i:64854383 original size:175 final size:175
Alignment explanation
Indices: 64854200--64854705 Score: 868
Period size: 175 Copynumber: 2.9 Consensus size: 175
64854190 GTAGATCGTG
64854200 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
* *
64854265 TTACATTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAAAGTAGATCGCGT
66 TTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGT
*
64854330 CAGGTCTTATTTCCCTGAGATTACAGTAGAACAGACCGAAGAATT
131 CAGGTCTTATTTCCCTGAGATTACAGTAGAACAGACCAAAGAATT
*
64854375 TCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
64854440 TTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGT
66 TTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGT
*
64854505 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAGAATT
131 CAGGTCTTATTTCCCTGAGATTACAGTAGAACAGACCAAAGAATT
* * * *
64854550 TCAGATATTATCTTCTTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
* * * * *
64854615 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGTGT
66 TTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGT
* *
64854680 CAGATCTTATCTCCCTGAGATTACAG
131 CAGGTCTTATTTCCCTGAGATTACAG
64854706 CGGAGCAGAT
Statistics
Matches: 314, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
175 314 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (175 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGT
CAGGTCTTATTTCCCTGAGATTACAGTAGAACAGACCAAAGAATT
Found at i:64854705 original size:129 final size:129
Alignment explanation
Indices: 64854550--64854843 Score: 464
Period size: 129 Copynumber: 2.3 Consensus size: 129
64854540 CCAAAGAATT
* * * *
64854550 TCAGATATTATCTTCTTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTG-AG
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAG
**
64854614 ATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGTG
66 -TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCA
64854679 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAG
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAG
*
64854744 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCA
* * * * *
64854808 TTAGGTCTTATCTCCCTCAGGTTACAGTGGAGCAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGA
64854844 CCGAAGAATT
Statistics
Matches: 152, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
129 150 0.99
130 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (129 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAG
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCA
Found at i:64854745 original size:85 final size:85
Alignment explanation
Indices: 64854602--64854934 Score: 232
Period size: 85 Copynumber: 3.9 Consensus size: 85
64854592 CTAGTAATCC
* * * * * * *
64854602 TATCTCCCTGAGATTACAGTGGAGCGGATTAAA-ATAAAG-GATCTTATCTCTCTAAAGTTACAG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCT--AGTAATCCTATCTCCCTGAAGTTACAG
* * *
64854665 TAGAGTAGATCGTGTCAGATCT
64 TGGAGCAGATCGTATCAGATCT
64854687 TATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAGTTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAGTTACAGTG
* *** *
64854752 GAGCGGATTAAAATAAAGGATCT
66 GAGCAGA-TCGTAT-CA-GATCT
* ** * * * * * * *
64854775 TATCTCTCTGA-AGTTACAGTAGAGTAGA-T--CGC-ATTAGGTCTTATCTCCCTCAGGTTACAG
1 TATCTCCCTGAGA-TTACAGCGGAGCAGATTAAAGCTAGTA-ATCCTATCTCCCTGAAGTTACAG
* *
64854835 TGGAGCAGACCGAAGAATTTCAGATCT
64 TGGAGCAGATC---G--TATCAGATCT
* *
64854862 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTG-AGATTATAGT
1 TATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAG-TTACAGT
64854926 GGAGCAGAT
65 GGAGCAGAT
64854935 TAAAGTAATA
Statistics
Matches: 186, Mismatches: 44, Indels: 31
0.71 0.17 0.12
Matches are distributed among these distances:
84 5 0.03
85 86 0.46
86 3 0.02
87 30 0.16
88 30 0.16
89 2 0.01
90 27 0.15
91 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (85 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAAGTTACAGTG
GAGCAGATCGTATCAGATCT
Found at i:64854862 original size:175 final size:175
Alignment explanation
Indices: 64854679--64855011 Score: 535
Period size: 175 Copynumber: 1.9 Consensus size: 175
64854669 GTAGATCGTG
64854679 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGA-A
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAGA
*
64854743 GTTACAGTGGAGCGGATTAAAATAA-AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGC
66 -TTACAGTGGAGCAGATTAAAATAATA-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGC
* * *
64854807 ATTAGGTCTTATCTCCCTCAGGTTACAGTGGAGCAGACCGAAGAATT
129 ATCAAGTCTTATCTCACTCAGGTTACAGTGGAGCAGACCGAAGAATT
*
64854854 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAGA
* * * *
64854919 TTATAGTGGAGCAGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCAT
66 TTACAGTGGAGCAGATTAAAATAATAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
* *
64854984 CAAGTCTTATCTCACTGAGGTTGCAGTG
131 CAAGTCTTATCTCACTCAGGTTACAGTG
64855012 TAGTATACTG
Statistics
Matches: 145, Mismatches: 11, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
175 143 0.99
176 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (175 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCAGATTAAAATAATAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
CAAGTCTTATCTCACTCAGGTTACAGTGGAGCAGACCGAAGAATT
Found at i:64854881 original size:479 final size:478
Alignment explanation
Indices: 64853984--64855011 Score: 1662
Period size: 479 Copynumber: 2.1 Consensus size: 478
64853974 TGATTGAAGA
*
64853984 AAGGATCTTATCTCTCTGAAGTTACAGCAGAATAGATCGCGTCAGGTCTTATTTCCCTGAGATTA
1 AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTA
* * *
64854049 CAATGGAACAGACCGAAGAATTTCAGATCTTACCTCCCTGAGATTACAGCGGAGCAGATTGAAGA
66 CAGTGGAACAGACCAAAGAATTTCAGATATTACCTCCCTGAGATTACAGCGGAGCAGATTGAAGA
* *
64854114 TAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAA
131 TAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAA
* *
64854179 GTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTT
196 GTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCT
* * *
64854244 AGTAATCCTATCTCCCTGAGATTACATTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAG
261 AGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAG
* * *
64854309 TTACAGCAAAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTACAGTAGAACAGACCGAAGAAT
326 TTACAGCAAAGTAGATCGCATCAGGTCTTATCTCCCTCAGATTACAGTAGAACAGACCGAAGAAT
* *
64854374 TTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGTTAGTAATCCTATCTCCCTGAG
391 TTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAG
**
64854439 ATTACAGTGGAGTGGATTAAAAT
456 ATTACAGTGGAGCAGATTAAAAT
64854462 GAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATT
1 -AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATT
* * *
64854527 ACAGTGGAACAGACCAAAGAATTTCAGATATTATCTTCTTGAGATTACAGCGGAGCAGATTGAAG
65 ACAGTGGAACAGACCAAAGAATTTCAGATATTACCTCCCTGAGATTACAGCGGAGCAGATTGAAG
*
64854592 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAA
130 ATAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAA
64854657 AGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGC
195 AGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGC
64854722 TAGTAATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGA
260 TAGTAATCCTATCTCCCTGAGA-TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGA
* * * * * *
64854786 AGTTACAGTAGAGTAGATCGCATTAGGTCTTATCTCCCTCAGGTTACAGTGGAGCAGACCGAAGA
324 AGTTACAGCAAAGTAGATCGCATCAGGTCTTATCTCCCTCAGATTACAGTAGAACAGACCGAAGA
64854851 ATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTG
389 ATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTG
* *
64854916 AGATTATAGTGGAGCAGATTAAAGT
454 AGATTACAGTGGAGCAGATTAAAAT
* * * * * * * * *
64854941 AATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAAGTCTTATCTCACTGAGGTT
1 AA-GGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATT
*
64855006 GCAGTG
65 ACAGTG
64855012 TAGTATACTG
Statistics
Matches: 507, Mismatches: 40, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
478 3 0.01
479 504 0.99
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (478 bp):
AAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATTA
CAGTGGAACAGACCAAAGAATTTCAGATATTACCTCCCTGAGATTACAGCGGAGCAGATTGAAGA
TAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAA
GTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCT
AGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAG
TTACAGCAAAGTAGATCGCATCAGGTCTTATCTCCCTCAGATTACAGTAGAACAGACCGAAGAAT
TTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAG
ATTACAGTGGAGCAGATTAAAAT
Found at i:64854929 original size:304 final size:303
Alignment explanation
Indices: 64854071--64855071 Score: 1121
Period size: 304 Copynumber: 3.3 Consensus size: 303
64854061 CCGAAGAATT
*
64854071 TCAGATCTTACCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
* *
64854136 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGTGT
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGT
* * ** *
64854201 CAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG---TT-AGTAATCCTATCTCCCTG
131 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAG--ATCTTATCTCCCTG
** ** * * * * * *** *
64854262 AGATTACATTGGAGTGGATTAAAATG-AAG-GATCTTATCTCTCTGA-AGTTACAGCAAAGTAGA
194 AGATTACAGCGGAGCAGATT-GAA-GCTAGTAATCCTATCTCCCTGAGA-TTACAGTGGAGCAGA
*** * * * * ** * *
64854324 -TCGCGT-CAGG-TCTTATTTCCCTGAGATTACAGTAGAACAGACCGAAGAATT
256 TTAAAGTAAAGGATCTTATCTCTCTAAG-TTACAGTAGAGTAGATC---G--TA
* *
64854375 TCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
* * *
64854440 TTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGT
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGT
* * * * * *
64854505 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATATTATCTTCTTGAG
131 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
*
64854570 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
196 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAA
* *
64854635 ATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGTG
261 GTAAAGGATCTTATCTCTCT-AAGTTACAGTAGAGTAGATCGTA
* *
64854679 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCCTGA-A
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
*
64854743 GTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
66 -TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCG
* * *
64854808 TTAGGTCTTATCTCCCTCAGGTTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGA
130 TCAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGA
*
64854873 GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTATAGTGGAGCAGATTAA
195 GATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAA
* * *
64854938 AGTAATA-GATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCA
260 AGTAA-AGGATCTTATCTCTCT-AAGTTACAGTAGAGTAGATCGTA
* * * * * * * * * *
64854983 TCA-AGTCTTATCTCACTGAGGTTGCAGTGTAGTATACTGAAGATAACTAATCCCATCTCCCTGA
1 TCAGA-TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGAT-AGTAATCCTATCTCCCTGA
* *
64855047 -AGTTGCAGTAGGAGTGGATTAAAAT
64 GA-TTACAGT-GGAGCGGATTAAAAT
64855072 GATTAATCCT
Statistics
Matches: 598, Mismatches: 83, Indels: 30
0.84 0.12 0.04
Matches are distributed among these distances:
303 2 0.00
304 466 0.78
305 30 0.05
306 64 0.11
307 5 0.01
308 5 0.01
309 24 0.04
310 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (303 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGT
CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAA
GTAAAGGATCTTATCTCTCTAAGTTACAGTAGAGTAGATCGTA
Found at i:64856714 original size:3 final size:3
Alignment explanation
Indices: 64856644--64856705 Score: 70
Period size: 3 Copynumber: 20.3 Consensus size: 3
64856634 TAATTTAATG
* * * *
64856644 TAT TAT CAT CTAT CAT TAT TAT TAT TAT TAT CAT TAT TAT GAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
64856690 TAT TAT TAT TAG TAT T
1 TAT TAT TAT TAT TAT T
64856706 GGTATTATTG
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
3 46 0.96
4 2 0.04
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:64856875 original size:6 final size:6
Alignment explanation
Indices: 64856864--64856892 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
64856854 ATATTTATTT
64856864 TATATC TATATC TATATC TATATC TATAT
1 TATATC TATATC TATATC TATATC TATAT
64856893 ACATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (6 bp):
TATATC
Found at i:64856898 original size:18 final size:18
Alignment explanation
Indices: 64856864--64856904 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
64856854 ATATTTATTT
*
64856864 TATATCTATATCTATATC
1 TATATCTATATCTATATA
64856882 TATATCTATATAC-ATATA
1 TATATCTATAT-CTATATA
64856900 TATAT
1 TATAT
64856905 TTTTATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.49
Consensus pattern (18 bp):
TATATCTATATCTATATA
Found at i:64856935 original size:20 final size:20
Alignment explanation
Indices: 64856912--64856952 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
64856902 TATTTTTATT
64856912 TTTATAAGTATATATATATA
1 TTTATAAGTATATATATATA
* * *
64856932 TTTATATGTATGTATTTATA
1 TTTATAAGTATATATATATA
64856952 T
1 T
64856953 ATTTTTGTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
TTTATAAGTATATATATATA
Found at i:64860296 original size:22 final size:22
Alignment explanation
Indices: 64860271--64860312 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
64860261 TTAATCTGAT
*
64860271 ATATCAATTATATTGATATAAA
1 ATATCAATTATATTAATATAAA
* *
64860293 ATATTATTTATATTAATATA
1 ATATCAATTATATTAATATA
64860313 TATTTAACGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
ATATCAATTATATTAATATAAA
Found at i:64876056 original size:3 final size:3
Alignment explanation
Indices: 64876048--64876114 Score: 50
Period size: 3 Copynumber: 22.3 Consensus size: 3
64876038 AAACTATCAT
* * *
64876048 ATA ATA ATA AT- ATG ATGA ATA AAA ATG AT- ATAA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA AT-A ATA ATA ATA ATA
*
64876093 GA-A ATA ATA ATC ATA ATA ATA A
1 -ATA ATA ATA ATA ATA ATA ATA A
64876115 ATGATAATAC
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
2 5 0.10
3 42 0.81
4 5 0.10
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:64876100 original size:15 final size:15
Alignment explanation
Indices: 64876048--64876103 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
64876038 AAACTATCAT
64876048 ATAATAATAATATGATGA
1 ATAATAATAATA-GA--A
* * *
64876066 ATAAAAATGATATAA
1 ATAATAATAATAGAA
64876081 ATAATAATAATAGAA
1 ATAATAATAATAGAA
64876096 ATAATAAT
1 ATAATAAT
64876104 CATAATAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
15 21 0.66
17 1 0.03
18 10 0.31
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
ATAATAATAATAGAA
Found at i:64876110 original size:12 final size:11
Alignment explanation
Indices: 64876046--64876135 Score: 60
Period size: 12 Copynumber: 7.6 Consensus size: 11
64876036 CTAAACTATC
64876046 ATATAATAATA
1 ATATAATAATA
*
64876057 ATATGATGAATA
1 ATATAAT-AATA
64876069 A-A-AATGATATA
1 ATATAAT-A-ATA
64876080 A-ATAATAATA
1 ATATAATAATA
*
64876090 ATAGAAATAATA
1 ATA-TAATAATA
64876102 ATCATAATAATAA
1 AT-ATAATAAT-A
64876115 ATGATAATACATTA
1 AT-ATAATA-A-TA
64876129 ATATAAT
1 ATATAAT
64876136 GAAGAAAATA
Statistics
Matches: 65, Mismatches: 5, Indels: 16
0.76 0.06 0.19
Matches are distributed among these distances:
10 8 0.12
11 14 0.22
12 23 0.35
13 15 0.23
14 4 0.06
15 1 0.02
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (11 bp):
ATATAATAATA
Found at i:64876113 original size:15 final size:14
Alignment explanation
Indices: 64876043--64876114 Score: 56
Period size: 15 Copynumber: 4.9 Consensus size: 14
64876033 TATCTAAACT
64876043 ATCATATAATAATA
1 ATCATATAATAATA
*
64876057 AT-ATGATGAATAAAA
1 ATCAT-AT-AATAATA
*
64876072 ATGATATAAATAATA
1 ATCATAT-AATAATA
* *
64876087 ATAATAGAAATAATA
1 ATCATA-TAATAATA
64876102 ATCATAATAATAA
1 ATCAT-ATAATAA
64876115 ATGATAATAC
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
13 2 0.04
14 4 0.09
15 37 0.80
16 3 0.07
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (14 bp):
ATCATATAATAATA
Found at i:64882062 original size:6 final size:6
Alignment explanation
Indices: 64882051--64882106 Score: 57
Period size: 6 Copynumber: 9.8 Consensus size: 6
64882041 AGGCAACCGA
* *
64882051 ATTTTT ATTTTT ATTTTT ATTTTT A-CTTT ATTTATT A-CTTT A-TTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTT-TT ATTTTT ATTTTT
64882097 A-TTTT ATTTT
1 ATTTTT ATTTT
64882107 ACTTATTTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
5 16 0.37
6 24 0.56
7 3 0.07
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:64882068 original size:12 final size:11
Alignment explanation
Indices: 64882053--64882106 Score: 65
Period size: 12 Copynumber: 4.8 Consensus size: 11
64882043 GCAACCGAAT
64882053 TTTTATTTTTA
1 TTTTATTTTTA
64882064 TTTTTATTTTTA
1 -TTTTATTTTTA
*
64882076 CTTTATTTATTA
1 TTTTATTT-TTA
*
64882088 CTTTA-TTTTA
1 TTTTATTTTTA
64882098 TTTTATTTT
1 TTTTATTTT
64882107 ACTTATTTGG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
10 7 0.18
11 12 0.32
12 19 0.50
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:64882101 original size:27 final size:29
Alignment explanation
Indices: 64882060--64882113 Score: 76
Period size: 27 Copynumber: 1.9 Consensus size: 29
64882050 AATTTTTATT
*
64882060 TTTATTTTTATTTTTACTTTATTTATTAC
1 TTTATTTTTATTTTTACTTTACTTATTAC
*
64882089 TTTA-TTTTA-TTTTATTTTACTTATT
1 TTTATTTTTATTTTTACTTTACTTATT
64882114 TGGATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 14 0.61
28 5 0.22
29 4 0.17
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (29 bp):
TTTATTTTTATTTTTACTTTACTTATTAC
Found at i:64883147 original size:18 final size:18
Alignment explanation
Indices: 64883123--64883158 Score: 63
Period size: 18 Copynumber: 1.9 Consensus size: 18
64883113 CTTAAAGCAT
64883123 AAAAAAAAGAGAAAAAAAC
1 AAAAAAAA-AGAAAAAAAC
64883142 AAAAAAAAAGAAAAAAA
1 AAAAAAAAAGAAAAAAA
64883159 TAATTTGGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAGAAAAAAAC
Found at i:64887455 original size:42 final size:42
Alignment explanation
Indices: 64887365--64887458 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
64887355 AAAGGCTAAT
* * *
64887365 CAGAAGCTCATGAGAGCTAAACAGAAACCCATAAGGGTTGAG
1 CAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAA
* * *
64887407 CGGAAGCTCGTAAGAGCTGAAC-GAAAACCCATAAGGGTTAAA
1 CAGAAGCTCATAAGAGCTAAACAG-AAACCCATAAGGGTTAAA
*
64887449 TAGAAGCTCA
1 CAGAAGCTCA
64887459 ATGGAGCTGA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
41 1 0.02
42 41 0.98
ACGTcount: A:0.40, C:0.19, G:0.26, T:0.15
Consensus pattern (42 bp):
CAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAA
Found at i:64888013 original size:18 final size:20
Alignment explanation
Indices: 64887972--64888021 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
64887962 AATTTAGTCC
64887972 TTAACTAATTAATCTTATCAAA
1 TTAACTAATT--TCTTATCAAA
64887994 TTAACTAATTT-TTATC-AA
1 TTAACTAATTTCTTATCAAA
64888012 TTAA-TAATTT
1 TTAACTAATTT
64888022 ATCTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.21
18 6 0.21
19 5 0.18
20 1 0.04
22 10 0.36
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAACTAATTTCTTATCAAA
Found at i:64889996 original size:10 final size:11
Alignment explanation
Indices: 64889978--64890005 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
64889968 GCCAGACTTG
64889978 AATTTTTTTTA
1 AATTTTTTTTA
64889989 AATTTTTTTTA
1 AATTTTTTTTA
64890000 AATTTT
1 AATTTT
64890006 GCATTATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
AATTTTTTTTA
Found at i:64891778 original size:10 final size:10
Alignment explanation
Indices: 64891764--64891934 Score: 77
Period size: 10 Copynumber: 17.4 Consensus size: 10
64891754 AAAAAATATG
64891764 AAAATTTATA
1 AAAATTTATA
*
64891774 TAAATTTATA
1 AAAATTTATA
64891784 AAAA-TTA-A
1 AAAATTTATA
* *
64891792 AAAAATCATA
1 AAAATTTATA
64891802 AAAATTTAT-
1 AAAATTTATA
* *
64891811 AAAAGTAATA
1 AAAATTTATA
** *
64891821 AAAACATATTT
1 AAAATTTA-TA
64891832 AAAATATT-TA
1 AAAAT-TTATA
64891842 AAAATTTATA
1 AAAATTTATA
** *
64891852 AAAACGTATT
1 AAAATTTATA
64891862 AAAATTCTATA
1 AAAATT-TATA
*
64891873 AAAA-TCAT-
1 AAAATTTATA
*
64891881 AAAATTATAAA
1 AAAATT-TATA
** *
64891892 AAAAAGTATT
1 AAAATTTATA
* *
64891902 AAAATTGACA
1 AAAATTTATA
* *
64891912 TAAACTTATA
1 AAAATTTATA
64891922 AAAA-TTATA
1 AAAATTTATA
64891931 AAAA
1 AAAA
64891935 CAATATATAC
Statistics
Matches: 114, Mismatches: 37, Indels: 21
0.66 0.22 0.12
Matches are distributed among these distances:
8 9 0.08
9 26 0.23
10 62 0.54
11 16 0.14
12 1 0.01
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.32
Consensus pattern (10 bp):
AAAATTTATA
Found at i:64891814 original size:19 final size:19
Alignment explanation
Indices: 64891751--64891893 Score: 86
Period size: 19 Copynumber: 7.5 Consensus size: 19
64891741 TCGTGACAAG
*
64891751 TTTA-AAAAAT-ATGAAAA
1 TTTATAAAAATCATAAAAA
* *
64891768 TTTATATAAATTTATAAAAA
1 TTTATA-AAAATCATAAAAA
*
64891788 -TTAAAAAAATCATAAAAA
1 TTTATAAAAATCATAAAAA
* *
64891806 TTTATAAAAGTAATAAAAACA
1 TTTATAAAAATCAT-AAAA-A
*
64891827 TATT-TAAAATAT-TTAAAAA
1 T-TTATAAAA-ATCATAAAAA
*
64891846 TTTATAAAAA-CGTATTAAAA
1 TTTATAAAAATC--ATAAAAA
64891866 TTCTATAAAAATCAT-AAAA
1 TT-TATAAAAATCATAAAAA
64891885 -TTATAAAAA
1 TTTATAAAAA
64891894 AAAGTATTAA
Statistics
Matches: 100, Mismatches: 12, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
17 12 0.12
18 16 0.16
19 29 0.29
20 23 0.23
21 16 0.16
22 4 0.04
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (19 bp):
TTTATAAAAATCATAAAAA
Found at i:64891823 original size:28 final size:27
Alignment explanation
Indices: 64891775--64891828 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
64891765 AAATTTATAT
*
64891775 AAATTTATAAAAATTAAAAAAATCATAA
1 AAATTTATAAAAAGTAAAAAAA-CATAA
64891803 AAATTTAT-AAAAGTAATAAAAACATA
1 AAATTTATAAAAAGTAA-AAAAACATA
64891829 TTTAAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.28
Consensus pattern (27 bp):
AAATTTATAAAAAGTAAAAAAACATAA
Found at i:64891853 original size:31 final size:31
Alignment explanation
Indices: 64891800--64891884 Score: 86
Period size: 31 Copynumber: 2.8 Consensus size: 31
64891790 AAAAAAATCA
64891800 TAAAA-ATTTATAAAAGTAATAAAAACATATT
1 TAAAATATTTATAAAAGTAATAAAAACATA-T
* * *
64891831 TAAAATATTTA-AAAATTTATAAAAACGTAT
1 TAAAATATTTATAAAAGTAATAAAAACATAT
* * *
64891861 TAAAAT-TCTATAAAAATCATAAAA
1 TAAAATATTTATAAAAGTAATAAAA
64891885 TTATAAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
29 3 0.07
30 18 0.39
31 20 0.43
32 5 0.11
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (31 bp):
TAAAATATTTATAAAAGTAATAAAAACATAT
Found at i:64891893 original size:9 final size:9
Alignment explanation
Indices: 64891753--64891934 Score: 71
Period size: 9 Copynumber: 18.7 Consensus size: 9
64891743 GTGACAAGTT
*
64891753 TAAAAAATA
1 TAAAAATTA
*
64891762 TGAAAATTTA
1 T-AAAAATTA
*
64891772 TATAAATTTA
1 TA-AAAATTA
64891782 TAAAAATTA
1 TAAAAATTA
* *
64891791 AAAAAATCA
1 TAAAAATTA
64891800 TAAAAATTTA
1 TAAAAA-TTA
* *
64891810 TAAAAGTAA
1 TAAAAATTA
*
64891819 TAAAAACATATT
1 T-AAAA-AT-TA
64891831 TAAAATATT-
1 TAAAA-ATTA
64891840 TAAAAATTTA
1 TAAAAA-TTA
*
64891850 TAAAAACGTA
1 TAAAAA-TTA
*
64891860 TTAAAATTCTA
1 -TAAAAAT-TA
*
64891871 TAAAAATCA
1 TAAAAATTA
64891880 T-AAAATTA
1 TAAAAATTA
*
64891888 TAAAAAAAAGTA
1 T---AAAAATTA
*
64891900 TTAAAATTGA
1 TAAAAATT-A
* *
64891910 CATAAACTTA
1 TA-AAAATTA
64891920 TAAAAATTA
1 TAAAAATTA
64891929 TAAAAA
1 TAAAAA
64891935 CAATATATAC
Statistics
Matches: 129, Mismatches: 28, Indels: 32
0.68 0.15 0.17
Matches are distributed among these distances:
8 8 0.06
9 49 0.38
10 45 0.35
11 19 0.15
12 8 0.06
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:64891935 original size:19 final size:19
Alignment explanation
Indices: 64891753--64891934 Score: 95
Period size: 20 Copynumber: 9.3 Consensus size: 19
64891743 GTGACAAGTT
* *
64891753 TAAAAAATATGAAAATTTA
1 TAAAAATTATAAAAATTTA
*
64891772 TATAAATTTATAAAAA-TTA
1 TA-AAAATTATAAAAATTTA
* *
64891791 AAAAAATCATAAAAATTTA
1 TAAAAATTATAAAAATTTA
* *
64891810 TAAAAGTAATAAAAACATATT-
1 TAAAAATTAT-AAAA-AT-TTA
64891831 TAAAATATT-TAAAAATTTA
1 TAAAA-ATTATAAAAATTTA
* *
64891850 TAAAAACGTATTAAAATTCTA
1 TAAAAA-TTATAAAAATT-TA
*
64891871 TAAAAATCAT-AAAATTATAA
1 TAAAAATTATAAAAATT-T-A
* * * *
64891891 AAAAAAGTATTAAAATTGA
1 TAAAAATTATAAAAATTTA
* *
64891910 CATAAACTTATAAAAA-TTA
1 TA-AAAATTATAAAAATTTA
64891929 TAAAAA
1 TAAAAA
64891935 CAATATATAC
Statistics
Matches: 123, Mismatches: 27, Indels: 27
0.69 0.15 0.15
Matches are distributed among these distances:
18 17 0.14
19 36 0.29
20 45 0.37
21 22 0.18
22 3 0.02
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.32
Consensus pattern (19 bp):
TAAAAATTATAAAAATTTA
Found at i:64891941 original size:20 final size:20
Alignment explanation
Indices: 64891840--64891941 Score: 59
Period size: 19 Copynumber: 5.1 Consensus size: 20
64891830 TTAAAATATT
*
64891840 TAAAAATTTATAAAAAC-GTA
1 TAAAAA-TTATAAAAACAATA
* * *
64891860 TTAAAATTCTATAAA-AATCA
1 TAAAAATTATAAAAACAAT-A
*
64891880 T-AAAATTATAAAAAAAAGTA
1 TAAAAATTATAAAAACAA-TA
* * * *
64891900 TTAAAATTGACATAAAC-TTA
1 TAAAAATT-ATAAAAACAATA
64891920 TAAAAATTATAAAAACAATA
1 TAAAAATTATAAAAACAATA
64891940 TA
1 TA
64891942 TACAAAACTT
Statistics
Matches: 61, Mismatches: 14, Indels: 14
0.69 0.16 0.16
Matches are distributed among these distances:
19 25 0.41
20 24 0.39
21 7 0.11
22 5 0.08
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (20 bp):
TAAAAATTATAAAAACAATA
Found at i:64892464 original size:9 final size:10
Alignment explanation
Indices: 64892449--64892473 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
64892439 TATTTTAAAT
64892449 AATTTTTTAA
1 AATTTTTTAA
64892459 AATTTTTTAA
1 AATTTTTTAA
64892469 AATTT
1 AATTT
64892474 ATTTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:64892512 original size:17 final size:17
Alignment explanation
Indices: 64892460--64892528 Score: 54
Period size: 19 Copynumber: 3.9 Consensus size: 17
64892450 ATTTTTTAAA
*
64892460 ATTTTT-TAAAATTTAT
1 ATTTTTATAATATTTAT
*
64892476 -TTTTTATTAGAGTTTTTAT
1 ATTTTTA-TA-A-TATTTAT
64892495 ATTTTTATAATATTTAT
1 ATTTTTATAATATTTAT
64892512 ATGTTTTTATAAT-TTTA
1 A--TTTTTATAATATTTA
64892529 ATAAGTTTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
15 5 0.12
17 9 0.21
18 6 0.14
19 17 0.40
20 6 0.14
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
ATTTTTATAATATTTAT
Found at i:64892527 original size:9 final size:9
Alignment explanation
Indices: 64892488--64892586 Score: 51
Period size: 9 Copynumber: 10.6 Consensus size: 9
64892478 TTTATTAGAG
64892488 TTTTTAT-A
1 TTTTTATAA
64892496 TTTTTATAA
1 TTTTTATAA
* *
64892505 TATTTATATG
1 TTTTTATA-A
64892515 TTTTTATAA
1 TTTTTATAA
*
64892524 TTTTAATAA
1 TTTTTATAA
*
64892533 GTTTATATCAA
1 -TTTTTAT-AA
*
64892544 -TTTTATTA
1 TTTTTATAA
64892552 -TTTTATTATA
1 TTTTTA-TA-A
* *
64892562 TTTTTGTGATT
1 TTTTTAT-A-A
64892573 TTTTTATAA
1 TTTTTATAA
64892582 TTTTT
1 TTTTT
64892587 TAAAGATTTT
Statistics
Matches: 69, Mismatches: 14, Indels: 15
0.70 0.14 0.15
Matches are distributed among these distances:
8 13 0.19
9 27 0.39
10 15 0.22
11 14 0.20
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.67
Consensus pattern (9 bp):
TTTTTATAA
Found at i:64892536 original size:19 final size:19
Alignment explanation
Indices: 64892496--64892548 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
64892486 AGTTTTTATA
*
64892496 TTTTTATAATATTT-ATATG
1 TTTTTATAAT-TTTAATAAG
64892515 TTTTTATAATTTTAATAAG
1 TTTTTATAATTTTAATAAG
*
64892534 TTTATATCAATTTTA
1 TTTTTAT-AATTTTA
64892549 TTATTTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 3 0.10
19 20 0.67
20 7 0.23
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTTTATAATTTTAATAAG
Found at i:64892537 original size:27 final size:27
Alignment explanation
Indices: 64892487--64892540 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
64892477 TTTTATTAGA
*
64892487 GTTTTTATATTTTTATAATATTTATAT
1 GTTTTTATATTTTAATAATATTTATAT
*
64892514 GTTTTTATAATTTTAATAA-GTTTATAT
1 GTTTTTAT-ATTTTAATAATATTTATAT
64892541 CAATTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (27 bp):
GTTTTTATATTTTAATAATATTTATAT
Found at i:64892566 original size:19 final size:19
Alignment explanation
Indices: 64892471--64892586 Score: 55
Period size: 19 Copynumber: 6.2 Consensus size: 19
64892461 TTTTTTAAAA
*
64892471 TTTATT-TTTTATTAGAGTT
1 TTTATTATTTTATTATA-TT
*
64892490 TTTA-TATTTTTATAATATT
1 TTTATTA-TTTTATTATATT
*
64892509 TATATGT-TTTTA-TA-ATT
1 TTTAT-TATTTTATTATATT
* * * *
64892526 TTAATAAGTTTA-TATCAAT
1 TTTATTATTTTATTAT-ATT
64892545 TTTATTATTTTATTATATT
1 TTTATTATTTTATTATATT
* * *
64892564 TTTGTGATTTTTTTATAATT
1 TTTATTATTTTATTAT-ATT
64892584 TTT
1 TTT
64892587 TAAAGATTTT
Statistics
Matches: 72, Mismatches: 16, Indels: 17
0.69 0.15 0.16
Matches are distributed among these distances:
17 12 0.17
18 2 0.03
19 40 0.56
20 17 0.24
21 1 0.01
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.66
Consensus pattern (19 bp):
TTTATTATTTTATTATATT
Found at i:64896962 original size:32 final size:30
Alignment explanation
Indices: 64896922--64896980 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
64896912 TATTTGAGTT
64896922 AATTAAATTATTCGGATAAACTCGAATAAAA
1 AATTAAATTATT-GGATAAACTCGAATAAAA
* * *
64896953 AATTAAAATTCTTGGTTTAACTCGAATA
1 AATT-AAATTATTGGATAAACTCGAATA
64896981 TAAATTACAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 17 0.71
32 7 0.29
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (30 bp):
AATTAAATTATTGGATAAACTCGAATAAAA
Found at i:64900271 original size:18 final size:18
Alignment explanation
Indices: 64900237--64900271 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64900227 TTTTTAGATT
* *
64900237 TTTTTTAAAATTTTATAA
1 TTTTTTAAAAATATATAA
64900255 TTTTTTAAAAATATATA
1 TTTTTTAAAAATATATA
64900272 TAAAATTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTTTTAAAAATATATAA
Found at i:64900273 original size:20 final size:19
Alignment explanation
Indices: 64900236--64900274 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
64900226 ATTTTTAGAT
* *
64900236 TTTTTTTAAAATTTTATAA
1 TTTTTTAAAAATTATATAA
64900255 TTTTTTAAAAATATATATAA
1 TTTTTTAAAAAT-TATATAA
64900275 AATTTAGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTTTAAAAATTATATAA
Found at i:64900335 original size:20 final size:21
Alignment explanation
Indices: 64900303--64900347 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
64900293 ATATTTTTAA
64900303 TTTTAAAATTTATTTTG-ATT
1 TTTTAAAATTTATTTTGAATT
64900323 TTTTGAAAA-TTATTTTGAATT
1 TTTT-AAAATTTATTTTGAATT
64900344 TTTT
1 TTTT
64900348 TTTGTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (21 bp):
TTTTAAAATTTATTTTGAATT
Found at i:64905680 original size:29 final size:29
Alignment explanation
Indices: 64905636--64905693 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
64905626 GCTAGGGAGA
*
64905636 AAGGGAAAGCATGCAATTCAATCTAATCC
1 AAGGGAAAGCACGCAATTCAATCTAATCC
* *
64905665 AAGGGAAAGCACGCAATTTAATCTGATCC
1 AAGGGAAAGCACGCAATTCAATCTAATCC
64905694 TCAGTTACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.21
Consensus pattern (29 bp):
AAGGGAAAGCACGCAATTCAATCTAATCC
Found at i:64907289 original size:15 final size:14
Alignment explanation
Indices: 64907268--64907303 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
64907258 ATAATCCTTA
*
64907268 ATAATTATCTTAAT
1 ATAATTATCCTAAT
64907282 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
64907297 ATAATTA
1 ATAATTA
64907304 AAATAGAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:64908764 original size:19 final size:19
Alignment explanation
Indices: 64908736--64908777 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
64908726 TCATCAATTA
64908736 ATTTAATAAT-ATTACTATT
1 ATTTAATAATCA-TACTATT
* *
64908755 ATTTATTAATCATATTATT
1 ATTTAATAATCATACTATT
64908774 ATTT
1 ATTT
64908778 GTATTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 19 0.95
20 1 0.05
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTAATAATCATACTATT
Found at i:64916437 original size:57 final size:58
Alignment explanation
Indices: 64916340--64916456 Score: 148
Period size: 57 Copynumber: 2.0 Consensus size: 58
64916330 ATTAATAGGC
* * *
64916340 GAAAATGGAAAAATGGGAAACATTTGGAGATGATTATGGTTTTCT-CAAAGATGAAAAT
1 GAAAATGGAAAAATGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAA-ATGAAAAT
* * * *
64916398 GAAAATGGAGAAAT-AGAATCATTTGGAAATGAATGTGGTTTTCTCCTAAATGAAAAT
1 GAAAATGGAAAAATGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAT
64916455 GA
1 GA
64916457 CCTGAAAAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 35 0.69
58 16 0.31
ACGTcount: A:0.43, C:0.06, G:0.23, T:0.28
Consensus pattern (58 bp):
GAAAATGGAAAAATGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAT
Found at i:64924818 original size:41 final size:41
Alignment explanation
Indices: 64924761--64924952 Score: 314
Period size: 41 Copynumber: 4.7 Consensus size: 41
64924751 CATTGAATGT
* * *
64924761 AAGGGGTTGTTAAGTGCAGATTCCTCGAATCACTAATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
64924802 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATC-AAA
* * *
64924844 AA-GGGTTGCTAAGTGCAAATTCCCCGAATCATTGATCGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
64924884 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
64924925 AAGGGGTTGCTAAGTGCAGATTCCCCGA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGA
64924953 GGGGTTGCTA
Statistics
Matches: 140, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
40 4 0.03
41 131 0.94
42 5 0.04
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
Found at i:64924962 original size:26 final size:26
Alignment explanation
Indices: 64924926--64924975 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
64924916 CTGATCAAAA
64924926 AGGGGTTGCTAAGTGC-AGATTCCCCG
1 AGGGGTTGCTAAGTGCTA-ATTCCCCG
64924952 AGGGGTTGCTAAGTGCTAATTCCC
1 AGGGGTTGCTAAGTGCTAATTCCC
64924976 TGAATTATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.26
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTAATTCCCCG
Found at i:64924995 original size:67 final size:68
Alignment explanation
Indices: 64924885--64925015 Score: 178
Period size: 67 Copynumber: 1.9 Consensus size: 68
64924875 TTGATCGAAA
64924885 AGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAAAAGG-GGTTGCTAAGTGCAGATTCC
1 AGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAAAAGGTGGTTGCTAAGTGCAGATTCC
64924949 CCG
66 CCG
* * * * *
64924952 AGGGGTTGCTAAGTGCTA-ATTCCCTGAATTATTGATTC-TAAAGGTGGTTGCTAAGTGCTGATT
1 AGGGGTTGCTAAGTGC-AGATTCCCCGAATCACTGA-TCAAAAAGGTGGTTGCTAAGTGCAGATT
64925015 C
64 C
64925016 AACCGTATCC
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
67 35 0.62
68 21 0.38
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (68 bp):
AGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAAAAGGTGGTTGCTAAGTGCAGATTCC
CCG
Found at i:64925002 original size:42 final size:41
Alignment explanation
Indices: 64924955--64925098 Score: 139
Period size: 42 Copynumber: 3.4 Consensus size: 41
64924945 TTCCCCGAGG
* * * *
64924955 GGTTGCTAAGTGCTAATTCCCTGAATTATTGATTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCC-GTATAATTGATTATAAAGGT
** *
64924997 GGTTGCTAAGTGCTGATTCAACCGTATCCTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTC--CCGTATAATTGATTAT-AAAGGT
* * *
64925040 GGTTGCTATGTGCTGATTCCCCGTATAACTGAATAT-AAGGT
1 GGTTGCTAAGTGCTGATT-CCCGTATAATTGATTATAAAGGT
64925081 GGTTGCTAAGTGCTGATT
1 GGTTGCTAAGTGCTGATT
64925099 TCACCGAGTA
Statistics
Matches: 85, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
40 4 0.05
41 17 0.20
42 29 0.34
43 27 0.32
44 8 0.09
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (41 bp):
GGTTGCTAAGTGCTGATTCCCGTATAATTGATTATAAAGGT
Found at i:64925044 original size:43 final size:41
Alignment explanation
Indices: 64924952--64925098 Score: 127
Period size: 43 Copynumber: 3.5 Consensus size: 41
64924942 AGATTCCCCG
* *
64924952 AGGGGTTGCTAAGTGCTAATTCCCTGAATTATTGATTCTAA
1 AGGGGTTGCTAAGTGCTGATTCCCTGAATCATTGATTCTAA
* * *
64924993 AGGTGGTTGCTAAGTGCTGATTCAACC-GTATCCTTGATTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTC--CCTGAATCATTGATTCT-AA
* * * * * * *
64925037 AGGGGTTGCTATGTGCTGATTCCCCGTATAACTGAATAT-A
1 AGGGGTTGCTAAGTGCTGATTCCCTGAATCATTGATTCTAA
64925077 AGGTGGTTGCTAAGTGCTGATT
1 AGG-GGTTGCTAAGTGCTGATT
64925099 TCACCGAGTA
Statistics
Matches: 88, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
40 4 0.05
41 22 0.25
42 27 0.31
43 28 0.32
44 7 0.08
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.35
Consensus pattern (41 bp):
AGGGGTTGCTAAGTGCTGATTCCCTGAATCATTGATTCTAA
Found at i:64929789 original size:22 final size:23
Alignment explanation
Indices: 64929746--64929794 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
64929736 TAAAACAAGC
*
64929746 ATATATATAATAAATATTAAAATT
1 ATATATATAATAAATA-TAAAAAT
* *
64929770 ATATTTATATTAAATA-AAAAAT
1 ATATATATAATAAATATAAAAAT
64929792 ATA
1 ATA
64929795 AACTAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 8 0.36
24 14 0.64
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
ATATATATAATAAATATAAAAAT
Found at i:64930601 original size:18 final size:18
Alignment explanation
Indices: 64930578--64930620 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
64930568 GAATAGGTTT
64930578 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
* *
64930596 TTAATTGAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
64930614 TTAATTA
1 TTAATTA
64930621 CACCTTGAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:64935653 original size:29 final size:29
Alignment explanation
Indices: 64935611--64935669 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
64935601 GGAGAGGGGG
64935611 TTGGTAGTAACCTTGGCCCCTCCTAAGAA
1 TTGGTAGTAACCTTGGCCCCTCCTAAGAA
64935640 TTGGTAGTAACCTTGGCCCCTCCTAAGAA
1 TTGGTAGTAACCTTGGCCCCTCCTAAGAA
64935669 T
1 T
64935670 GAAAAAAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (29 bp):
TTGGTAGTAACCTTGGCCCCTCCTAAGAA
Found at i:64945189 original size:23 final size:24
Alignment explanation
Indices: 64945163--64945209 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
64945153 TCTCGTTTCC
64945163 TTTCTTTACTTA-TTTCT-TTATTT
1 TTTCTTT-CTTACTTTCTCTTATTT
*
64945186 TTTCTTTTTTACTTTCTCTTATTT
1 TTTCTTTCTTACTTTCTCTTATTT
64945210 CCCATCTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 3 0.14
23 12 0.57
24 6 0.29
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTCTTTCTTACTTTCTCTTATTT
Found at i:64945927 original size:5 final size:5
Alignment explanation
Indices: 64945917--64945960 Score: 88
Period size: 5 Copynumber: 8.8 Consensus size: 5
64945907 AAGTAACTAC
64945917 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATT
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATT
64945961 GTTATAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:64949094 original size:16 final size:16
Alignment explanation
Indices: 64949073--64949112 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
64949063 TAATACACAC
64949073 ATATATATACACT-TTT
1 ATATATATACA-TGTTT
64949089 ATATATATACATGTTT
1 ATATATATACATGTTT
*
64949105 TTATATAT
1 ATATATAT
64949113 TTCCATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 1 0.05
16 21 0.95
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.53
Consensus pattern (16 bp):
ATATATATACATGTTT
Found at i:64949106 original size:18 final size:17
Alignment explanation
Indices: 64949073--64949135 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 17
64949063 TAATACACAC
*
64949073 ATATATATACA-CTTTT
1 ATATATATACATATTTT
*
64949089 ATATATATACATGTTTTT
1 ATATATATACAT-ATTTT
* *
64949107 ATATATTTCCATAATTTT
1 ATATATATACAT-ATTTT
*
64949125 ATGTATATACA
1 ATATATATACA
64949136 CATATATGTC
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
16 11 0.30
18 26 0.70
ACGTcount: A:0.37, C:0.10, G:0.03, T:0.51
Consensus pattern (17 bp):
ATATATATACATATTTT
Found at i:64954020 original size:9 final size:9
Alignment explanation
Indices: 64953980--64954057 Score: 50
Period size: 10 Copynumber: 8.1 Consensus size: 9
64953970 AAGAATGTTC
64953980 AAAAGAAAA
1 AAAAGAAAA
*
64953989 AAAACAAACA
1 AAAAGAAA-A
64953999 AAAAGGAAGAA
1 AAAA-GAA-AA
64954010 AAGAA-AAAA
1 AA-AAGAAAA
64954019 AAAAGGAAAA
1 AAAA-GAAAA
*
64954029 AAAATGAAAG
1 AAAA-GAAAA
* *
64954039 AAAATAAGA
1 AAAAGAAAA
*
64954048 AAAATAAAA
1 AAAAGAAAA
64954057 A
1 A
64954058 GGAGAAGCCT
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
8 2 0.04
9 22 0.40
10 23 0.42
11 5 0.09
12 3 0.05
ACGTcount: A:0.81, C:0.03, G:0.13, T:0.04
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:64954029 original size:12 final size:11
Alignment explanation
Indices: 64954008--64954058 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
64953998 AAAAAGGAAG
64954008 AAAAGAAAAAA
1 AAAAGAAAAAA
*
64954019 AAAAGGAAAAA
1 AAAAGAAAAAA
*
64954030 AAATGAAAGAAA
1 AAAAGAAA-AAA
*
64954042 ATAAGAAAAATA
1 AAAAGAAAAA-A
64954054 AAAAG
1 AAAAG
64954059 GAGAAGCCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
11 18 0.56
12 14 0.44
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.06
Consensus pattern (11 bp):
AAAAGAAAAAA
Found at i:64954031 original size:20 final size:20
Alignment explanation
Indices: 64953980--64954032 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
64953970 AAGAATGTTC
*
64953980 AAAA-GAAAAAAAACAAACA
1 AAAAGGAAAAAAAACAAAAA
*
64953999 AAAAGGAAGAAAAGA-AAAAA
1 AAAAGGAA-AAAAAACAAAAA
64954019 AAAAGGAAAAAAAA
1 AAAAGGAAAAAAAA
64954033 TGAAAGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 9 0.31
20 15 0.52
21 5 0.17
ACGTcount: A:0.83, C:0.04, G:0.13, T:0.00
Consensus pattern (20 bp):
AAAAGGAAAAAAAACAAAAA
Found at i:64954051 original size:31 final size:31
Alignment explanation
Indices: 64953982--64954051 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
64953972 GAATGTTCAA
*
64953982 AAGAAAAAAAACAAACAAAAAGGAAGAAAAG
1 AAGAAAAAAAACAAACAAAAAGAAAGAAAAG
* *
64954013 AA-AAAAAAAAGGAAA-AAAAATGAAAGAAAAT
1 AAGAAAAAAAA-CAAACAAAAA-GAAAGAAAAG
64954044 AAGAAAAA
1 AAGAAAAA
64954052 TAAAAAGGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
30 13 0.39
31 15 0.45
32 5 0.15
ACGTcount: A:0.80, C:0.03, G:0.14, T:0.03
Consensus pattern (31 bp):
AAGAAAAAAAACAAACAAAAAGAAAGAAAAG
Found at i:64954570 original size:108 final size:106
Alignment explanation
Indices: 64954384--64954582 Score: 265
Period size: 108 Copynumber: 1.9 Consensus size: 106
64954374 TTCTCATCGT
* * * * *
64954384 ATCTTAGCAAAATTGCTATCTTGATTATTTATTTATTTCGAGCTTTGTTCTCAATAAAATTCCAT
1 ATCTTAGCAAAATTGCTATCCTGATTATTTATTTATTTAGAGCTCTGCTCTCAATAAAATTCCAC
64954449 CTTGTCCATTGTGATAATCCTTTTCATCTTATTCATTTTGA
66 CTTGTCCATTGTGATAATCCTTTTCATCTTATTCATTTTGA
* * * *
64954490 ATCTTAGCAAAATTTGCTATCCTGATTAATTTCTTTGTTTAGAGCTCTGCTCTCAATAAGATTTC
1 ATCTTAGCAAAA-TTGCTATCCTGATT-ATTTATTTATTTAGAGCTCTGCTCTCAATAAAATTCC
* *
64954555 ACCTT-TCCCGTTGTGATAATCTTTTTCA
64 ACCTTGT-CCATTGTGATAATCCTTTTCA
64954583 AGCATTTTCC
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
106 12 0.15
107 14 0.18
108 53 0.67
ACGTcount: A:0.25, C:0.19, G:0.11, T:0.46
Consensus pattern (106 bp):
ATCTTAGCAAAATTGCTATCCTGATTATTTATTTATTTAGAGCTCTGCTCTCAATAAAATTCCAC
CTTGTCCATTGTGATAATCCTTTTCATCTTATTCATTTTGA
Found at i:64955533 original size:46 final size:46
Alignment explanation
Indices: 64955480--64956261 Score: 911
Period size: 46 Copynumber: 16.6 Consensus size: 46
64955470 CTAGAAGCAA
64955480 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
* * *
64955526 CAGATCTTGTCTTCTTGTATTTGGCAGTGGAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
* * * **
64955572 TAGATCTTGTCTCCCTATATTTGGCAGTAGAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
* *
64955618 TAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
*
64955664 CAGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
* * *
64955710 CAGATCTTGTCTTCCTGTATTTGGCAGTGAAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
* * * ** ** * * * * *
64955756 TAGATCTTATCTTCCTGCAGATCTTATCTTCCTGTATTTGGCAACGGAGTAGATCG
1 CAGATCTTGTCTTCCTG--TAT-TTGGC-AGC-GGA-GTAG-ATC-GA--AGATAG
* * * * *
64955812 AAGATAACAGATCTTGTCTTCTTGTATTTGGCAGTGAAGTACATCGAAGATAG
1 CAG-------ATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
* * * *
64955865 CAGATCTTATCTTCCTATATTTGGTAGCGGAGTAGATTGAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
* * * * *
64955911 CAGATCTTGTCTTCCTGTATTTGACAGTGAAGTAGATCAAAGATTG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
* * *
64955957 TAGATCTTATCTTCCTGTATTTGGCAGCGGAGTAGATGGAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
* * *
64956003 TAGATATTGTCTTCTTGTATTTGGCAG-GGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGG-AGTAGATCGAAGATAG
*
64956049 CAGATCTTGTCTTCTTGTATTTGGCAGCAGG-GTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGC-GGAGTAGATCGAAGATAG
*
64956095 CATATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
* *
64956141 CAGATCTTATCTTCCTGTATTTAGCAGCGGAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
*
64956187 CAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
*
64956233 CAGATCTTGTCTTCCTGTATTTAGCAGCG
1 CAGATCTTGTCTTCCTGTATTTGGCAGCG
64956262 AAACAGACTA
Statistics
Matches: 627, Mismatches: 88, Indels: 42
0.83 0.12 0.06
Matches are distributed among these distances:
45 4 0.01
46 571 0.91
48 4 0.01
49 3 0.00
51 2 0.00
52 2 0.00
53 9 0.01
54 1 0.00
55 2 0.00
56 9 0.01
57 1 0.00
58 2 0.00
60 3 0.00
61 2 0.00
63 12 0.02
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (46 bp):
CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
Found at i:64955779 original size:17 final size:17
Alignment explanation
Indices: 64955757--64955789 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
64955747 CAAAGATAGT
64955757 AGATCTTATCTTCCTGC
1 AGATCTTATCTTCCTGC
64955774 AGATCTTATCTTCCTG
1 AGATCTTATCTTCCTG
64955790 TATTTGGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.27, G:0.12, T:0.42
Consensus pattern (17 bp):
AGATCTTATCTTCCTGC
Found at i:64955790 original size:63 final size:63
Alignment explanation
Indices: 64955709--64955832 Score: 176
Period size: 63 Copynumber: 2.0 Consensus size: 63
64955699 ATCGAAGATA
* ** **
64955709 GCAGATCTTGTCTTCCTGTATTTGGCAGTGAAGTAGATCAAAGATAGTAGATCTTATCTTCCT
1 GCAGATCTTATCTTCCTGTATTTGGCAACGAAGTAGATCAAAGATAACAGATCTTATCTTCCT
* * *
64955772 GCAGATCTTATCTTCCTGTATTTGGCAACGGAGTAGATCGAAGATAACAGATCTTGTCTTC
1 GCAGATCTTATCTTCCTGTATTTGGCAACGAAGTAGATCAAAGATAACAGATCTTATCTTC
64955833 TTGTATTTGG
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.35
Consensus pattern (63 bp):
GCAGATCTTATCTTCCTGTATTTGGCAACGAAGTAGATCAAAGATAACAGATCTTATCTTCCT
Done.