Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 222 of 230
Found at i:65808116 original size:149 final size:148
Alignment explanation
Indices: 65807846--65808162 Score: 431
Period size: 149 Copynumber: 2.1 Consensus size: 148
65807836 TAAGCCTTTT
* * ** *
65807846 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTG-TTTTCAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
65807911 TAATTTCAATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
65 TAATTTCAATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-G
65807976 G-ACACGCTGAGGTAATTTC
129 GTACACGCTGAGGTAATTTC
* *
65807995 AATTTCTGTTTTCAAAATTCAACTTATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
* * **
65808060 TATTTTCAATTTCTGTT-TTCAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCG
65 TAATTTCAATTTCTGTTGTT-AAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCG
* * *
65808124 GTTCATATGCTGAGGTATTTTC
129 G-T-ACACGCTGAGGTAATTTC
*
65808146 AATTTCTGTTTTTAAAA
1 AATTTCTGTTTTCAAAA
65808163 AAAAATCAAC
Statistics
Matches: 148, Mismatches: 15, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
148 13 0.09
149 104 0.70
151 31 0.21
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.35
Consensus pattern (148 bp):
AATTTCTGTTTTCAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
AATTTCAATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGT
ACACGCTGAGGTAATTTC
Found at i:65808438 original size:72 final size:73
Alignment explanation
Indices: 65808357--65808498 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 73
65808347 TCAAAATCAG
* * *
65808357 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TGTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
65808421 AATTTCAA
66 AATTTCAA
* *
65808429 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
65808494 AATTT
66 AATTT
65808499 ATGTTTCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 54 0.84
73 10 0.16
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (73 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
AATTTCAA
Found at i:65808669 original size:73 final size:71
Alignment explanation
Indices: 65808490--65808689 Score: 265
Period size: 73 Copynumber: 2.8 Consensus size: 71
65808480 ATTTTCGTTT
* *
65808490 TTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCT
1 TTTTAATTTATG-TTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCT
65808555 GAGGTAA
65 GAGGTAA
* * ** *
65808562 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
1 TTTTAATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACGC
**
65808627 TGAGGTGG
64 TGAGGTAA
* * *
65808635 TTTTAATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT
1 TTTTAATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65808690 TGGCTCACAC
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
71 42 0.39
72 10 0.09
73 57 0.52
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (71 bp):
TTTTAATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTG
AGGTAA
Found at i:65808728 original size:14 final size:14
Alignment explanation
Indices: 65808709--65808743 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
65808699 CGCTGAGGTA
65808709 TTTTCAATTTCTGG
1 TTTTCAATTTCTGG
*
65808723 TTTTCAATTTCTGT
1 TTTTCAATTTCTGG
65808737 TTTTCAA
1 TTTTCAA
65808744 AAATCGACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.14, G:0.09, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:65808830 original size:162 final size:161
Alignment explanation
Indices: 65808562--65809367 Score: 943
Period size: 162 Copynumber: 5.0 Consensus size: 161
65808552 GCTGAGGTAA
* * *
65808562 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
** * * ** * * *
65808627 TGAGGTGGTTTTAATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTG
66 TGAGGTAATTTCAATTTCTGTTTGTAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTAG
65808692 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
131 GCTCACACGCTGAGGTATTTTCAATTTCT-GT
* * *
65808724 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* *
65808789 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
66 TGAGGTAATTTCAATTTCTGTTTGTAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTAG
* *
65808854 GCTCACATGCTGAGGTCTTTTCAATTTCTGT
131 GCTCACACGCTGAGGTATTTTCAATTTCTGT
** *
65808885 TCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACA
1 T-TTCAATTTCTGTT--TATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * *
65808950 CGCTAAGGTAATTTCAATTTCT-ATTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
63 CGCTGAGGTAATTTCAATTTCTGTTTG-T---AAAAAATTAACTCATATTGCGAGAGGTGAGTTG
*
65809014 AGCCTCAGG---ACACGCTGAGGTATTTTTAAATTTC---
124 AGCCT-AGGCTCACACGCTGAGGTA-TTTTCAATTTCTGT
*
65809048 --T--A----T-TTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
** *
65809103 TGAGGTAATTTCAATTTCTGTTTGCCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
66 TGAGGTAATTTCAATTTCTGTTTGTAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTAG
* *
65809168 GCTCACATGCTGAGGTCTTTTCAATTTCTGT
131 GCTCACACGCTGAGGTATTTTCAATTTCTGT
** *
65809199 TCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACA
1 T-TTCAATTTCTGTT--TATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
65809264 CGCTGAGGTAATTTCAATTTCT-ATTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
63 CGCTGAGGTAATTTCAATTTCTGTTTG-T---AAAAAATTAACTCATATTGCGAGAGGTGAGTTG
* *
65809328 AGCCTCAGG---ACACGCTGAGGTATTTTTAAATTTCTAT
124 AGCCT-AGGCTCACACGCTGAGGTA-TTTTCAATTTCTGT
65809365 TTT
1 TTT
65809368 TCAAAAATCA
Statistics
Matches: 552, Mismatches: 57, Indels: 67
0.82 0.08 0.10
Matches are distributed among these distances:
146 2 0.00
147 36 0.07
148 10 0.02
149 11 0.02
150 63 0.11
151 4 0.01
153 2 0.00
154 2 0.00
156 1 0.00
158 1 0.00
160 2 0.00
161 5 0.01
162 155 0.28
163 7 0.01
164 128 0.23
165 24 0.04
166 23 0.04
167 72 0.13
168 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (161 bp):
TTTCAATTTCTGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTAATTTCAATTTCTGTTTGTAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTAG
GCTCACACGCTGAGGTATTTTCAATTTCTGT
Found at i:65808843 original size:73 final size:74
Alignment explanation
Indices: 65808724--65809199 Score: 294
Period size: 73 Copynumber: 6.2 Consensus size: 74
65808714 AATTTCTGGT
* * *
65808724 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GACACG
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACG
65808788 CTGAGGTAA
66 CTGAGGTAA
* *
65808797 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-CACAC
**
65808862 GCTGAGGTCT
65 GCTGAGGTAA
** * * * * *
65808872 TTTCAATTTCTGTTCT-TCAATTTCTGTTCGTAAAAAAAATCA-ACT-C-ATATTGCTAGAGGTG
1 TTTCAATTTCTGTT-TGTCAA-----------AAATCAACTCATATTGCGAGA--GGT-GAGTTG
* * * *
65808933 AG--TTGAGCCTCAGGAC--ACGCTAA
51 AGCCTCG-GCCACACG-CTGA-GGTAA
** * *
65808956 GGT-AATTTCAATTTCTATTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TTTCAATTTC----TGT-TTG-T--CAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
65809020 AGG--ACACGCTGAGGTATT
57 -GGCCACACGCTGAGGTA-A
* * * *
65809038 TTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GACACG
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACG
65809102 CTGAGGTAA
66 CTGAGGTAA
* * *
65809111 TTTCAATTTCTGTTTGCCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-CACAC
**
65809176 GCTGAGGTCT
65 GCTGAGGTAA
65809186 TTTCAATTTCTGTT
1 TTTCAATTTCTGTT
65809200 CTTCAATTTC
Statistics
Matches: 309, Mismatches: 51, Indels: 84
0.70 0.11 0.19
Matches are distributed among these distances:
73 110 0.36
74 48 0.16
75 57 0.18
76 1 0.00
77 1 0.00
78 2 0.01
79 2 0.01
80 2 0.01
81 20 0.06
82 6 0.02
83 18 0.06
84 13 0.04
85 7 0.02
86 15 0.05
87 3 0.01
88 1 0.00
89 1 0.00
91 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (74 bp):
TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCCACACG
CTGAGGTAA
Found at i:65808892 original size:14 final size:14
Alignment explanation
Indices: 65808873--65808900 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
65808863 CTGAGGTCTT
65808873 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
65808887 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
65808901 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:65809093 original size:74 final size:73
Alignment explanation
Indices: 65808906--65809166 Score: 387
Period size: 76 Copynumber: 3.5 Consensus size: 73
65808896 TGTTCGTAAA
* *
65808906 AAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
65808971 TATTGTTAAAA
66 TATT-TT--AC
* *
65808982 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTCAATTT
*
65809047 CTATTTTTC
65 CTATTTTAC
*
65809056 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* **
65809121 TGTTTGCC
66 TATTTTAC
*
65809129 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
65809167 GGCTCACATG
Statistics
Matches: 171, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
73 51 0.30
74 53 0.31
76 54 0.32
77 13 0.08
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TATTTTAC
Found at i:65809097 original size:314 final size:314
Alignment explanation
Indices: 65808723--65809406 Score: 1314
Period size: 314 Copynumber: 2.2 Consensus size: 314
65808713 CAATTTCTGG
* * *
65808723 TTTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
1 TTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
*
65808788 CTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66 CTGAGGTAATTTCAATTTCTGTTTGCCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC
65808853 GGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTC
131 GGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTC
65808918 ATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTCAATTTCTATTGTTAAAAA
196 ATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTCAATTTCTATTGTTAAAAA
65808983 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
261 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
65809037 TTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
1 TTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
65809102 CTGAGGTAATTTCAATTTCTGTTTGCCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66 CTGAGGTAATTTCAATTTCTGTTTGCCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC
65809167 GGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTC
131 GGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTC
*
65809232 ATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTGTTAAAAA
196 ATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTCAATTTCTATTGTTAAAAA
65809297 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
261 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
*
65809351 TTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 TTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65809407 TGGGTTCACA
Statistics
Matches: 364, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
314 364 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (314 bp):
TTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
CTGAGGTAATTTCAATTTCTGTTTGCCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC
GGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTC
ATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTCAATTTCTATTGTTAAAAA
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
Found at i:65809135 original size:476 final size:481
Alignment explanation
Indices: 65808425--65809333 Score: 1298
Period size: 476 Copynumber: 1.9 Consensus size: 481
65808415 TGTTTTAATT
* *
65808425 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTCAATTTTC----
* *
65808490 TTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCT
62 --TTAA-TTATGTTTAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAACACGCT
* * *
65808555 GAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
124 GAGGTAATTTAAATTTCTATTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
** * * *
65808620 GACACGCTGAGGTGGTTTTAATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTG
189 GACACGCTGAGGTAATTTCAATTTATGTTCACAAAAAATTAACTCATATTGCAAGAGGTGAGTTG
* ***
65808685 AGCCTTGGCTCACACGCTGAGGTATTTTCAATTTCTGGTT-TTCAATTTCTGTT-TTTCAAAAAT
254 AGCCTCGGCTCACACGCTGAGGTATTTTCAATTTCT-GTTCTTCAATTTCTGTTCTAAAAAAAAT
* * *
65808748 CGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTT-T
318 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTGT
* *
65808812 GT-CAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTC
383 -TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTC
65808876 AATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAA
447 AATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAA
*
65808911 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTCAA-TTTC-T-A
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTCAATTTTCTTAA
*
65808973 -T-TG-TTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
66 TTATGTTTAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA--ACACGCTGAGGT
* * **
65809035 ATTTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
129 A-ATTTAAATTTCTATTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* ** * *
65809100 CGCTGAGGTAATTTCAATTTCTGTTTGCCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCC
193 CGCTGAGGTAATTTCAATTTATGTTCACAAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCC
* *
65809165 TCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAAC
258 TCGGCTCACACGCTGAGGTATTTTCAATTTCTGTTCTTCAATTTCTGTTC-TAAAAAAAATCAAC
*
65809230 TCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTGTTAAA
322 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTGTT--A
65809295 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
385 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
65809334 AGGACACGCT
Statistics
Matches: 378, Mismatches: 35, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
473 43 0.11
474 2 0.01
475 16 0.04
476 153 0.40
477 1 0.00
478 68 0.18
479 1 0.00
481 37 0.10
485 4 0.01
486 53 0.14
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (481 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTCAATTTTCTTAA
TTATGTTTAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAACACGCTGAGGTAA
TTTAAATTTCTATTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
TGAGGTAATTTCAATTTATGTTCACAAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTCG
GCTCACACGCTGAGGTATTTTCAATTTCTGTTCTTCAATTTCTGTTCTAAAAAAAATCAACTCAT
ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTGTTAAAAAAA
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGT
TCTTCAATTTCTGTTCGTAAAAAAAA
Found at i:65809206 original size:14 final size:14
Alignment explanation
Indices: 65809187--65809214 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
65809177 CTGAGGTCTT
65809187 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
65809201 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
65809215 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:65809326 original size:76 final size:76
Alignment explanation
Indices: 65809201--65809406 Score: 303
Period size: 76 Copynumber: 2.7 Consensus size: 76
65809191 ATTTCTGTTC
* *
65809201 TTCAATTTCTGTTCG-TAAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACAC
1 TTCAATTTCTATT-GTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
65809265 GCTGAGGTA-AT
65 GCTGAGGTATAT
65809276 TTCAATTTCTATTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTCAATTTCTATTGTT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
65809341 GCTGAGGTATTT
65 GCTGAGGTATAT
* ** *
65809353 TTAAATTTCTATT-TT-TCAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 TTCAATTTCTATTGTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65809407 TGGGTTCACA
Statistics
Matches: 121, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
74 37 0.31
75 13 0.11
76 58 0.48
77 13 0.11
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (76 bp):
TTCAATTTCTATTGTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTATAT
Found at i:65810154 original size:30 final size:30
Alignment explanation
Indices: 65810118--65810292 Score: 228
Period size: 30 Copynumber: 5.8 Consensus size: 30
65810108 ACTTTTCTCA
*
65810118 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
65810148 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
65810178 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
65810208 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* ** *
65810238 ATTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-CTCCACCACCAACTCC
*
65810268 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
65810293 CTTGTACCTA
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
29 3 0.02
30 127 0.98
ACGTcount: A:0.27, C:0.48, G:0.04, T:0.21
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:65810876 original size:25 final size:25
Alignment explanation
Indices: 65810848--65810906 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
65810838 ATATTACGTA
* *
65810848 TATATATATTTTATACTATTTTATT
1 TATATATATTTAATACTATATTATT
* *
65810873 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATT
65810898 TATATATAT
1 TATATATAT
65810907 ATTTTTTTTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATT
Found at i:65810976 original size:25 final size:25
Alignment explanation
Indices: 65810928--65811014 Score: 85
Period size: 25 Copynumber: 3.7 Consensus size: 25
65810918 ACATGTTATC
*
65810928 TTATGTATATA-TCTT-A-ACTATA
1 TTATGTATATATTTTTAACACTATA
*
65810950 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATATTTTTAACACTATA
* *
65810975 TTATGTACATATTTTTAATA-T-TA
1 TTATGTATATATTTTTAACACTATA
* *
65810998 TCATGTATTTATTTTTA
1 TTATGTATATATTTTTA
65811015 TATATGTACA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
22 10 0.19
23 19 0.35
24 2 0.04
25 23 0.43
ACGTcount: A:0.32, C:0.07, G:0.06, T:0.55
Consensus pattern (25 bp):
TTATGTATATATTTTTAACACTATA
Found at i:65811010 original size:23 final size:24
Alignment explanation
Indices: 65810930--65811019 Score: 73
Period size: 23 Copynumber: 3.9 Consensus size: 24
65810920 ATGTTATCTT
*
65810930 ATGTATATA-TCTTAACTATAT-T-
1 ATGTATATATTTTTAA-TATATATC
* * *
65810952 ATGTATGTATTTTTAACACTATATT
1 ATGTATATATTTTTAATA-TATATC
*
65810977 ATGTACATATTTTTAATAT-TATC
1 ATGTATATATTTTTAATATATATC
*
65811000 ATGTATTTATTTTT-ATATAT
1 ATGTATATATTTTTAATATAT
65811020 GTACATATTG
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
22 13 0.24
23 24 0.44
24 2 0.04
25 15 0.28
ACGTcount: A:0.33, C:0.07, G:0.06, T:0.54
Consensus pattern (24 bp):
ATGTATATATTTTTAATATATATC
Found at i:65811163 original size:16 final size:15
Alignment explanation
Indices: 65811139--65811186 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
65811129 TTAATTATAT
*
65811139 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
65811155 TATTTTAATATTTTA
1 TATTTTAATATTTTA
65811170 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
65811186 T
1 T
65811187 TATTCCCATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:65811174 original size:7 final size:8
Alignment explanation
Indices: 65811139--65811190 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
65811129 TTAATTATAT
*
65811139 TATTCTAA
1 TATTTTAA
*
65811147 TATTTTGA
1 TATTTTAA
65811155 TATTTTAA
1 TATTTTAA
65811163 TATTTT-A
1 TATTTTAA
65811170 TATTTTATA
1 TATTTTA-A
*
65811179 TATTTTAT
1 TATTTTAA
65811187 TATT
1 TATT
65811191 CCCATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:65812282 original size:31 final size:30
Alignment explanation
Indices: 65812235--65812297 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 30
65812225 AAAATTACTT
65812235 TTGATTTGTCACATACATGGCAAATGTTAG
1 TTGATTTGTCACATACATGGCAAATGTTAG
* * * *
65812265 TTGATTGTGTCAGATACATTGCATATTTTAG
1 TTGATT-TGTCACATACATGGCAAATGTTAG
65812296 TT
1 TT
65812298 TGAAAACTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 6 0.21
31 22 0.79
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.43
Consensus pattern (30 bp):
TTGATTTGTCACATACATGGCAAATGTTAG
Found at i:65828424 original size:22 final size:23
Alignment explanation
Indices: 65828398--65828460 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
65828388 TAATTTATGT
65828398 ATTTTTTATTAAAAATATAT-TA
1 ATTTTTTATTAAAAATATATCTA
* * *
65828420 ATTTTTTGTTAAAATTTTTATCTA
1 ATTTTTTATTAAAA-ATATATCTA
*
65828444 TTTTTATTATTAAAAAT
1 ATTTT-TTATTAAAAAT
65828461 TAATTTTTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
22 13 0.41
23 4 0.12
24 7 0.22
25 8 0.25
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (23 bp):
ATTTTTTATTAAAAATATATCTA
Found at i:65831213 original size:24 final size:22
Alignment explanation
Indices: 65831186--65831236 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 22
65831176 TTTATTATTT
65831186 ATAATATTTTATAATTAAATTTAA
1 ATAATATTTT-T-ATTAAATTTAA
*
65831210 ATAAAATATTTTTATTAATTTTAA
1 AT--AATATTTTTATTAAATTTAA
65831234 ATA
1 ATA
65831237 GCTAGGGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
22 1 0.04
24 14 0.58
25 1 0.04
26 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
ATAATATTTTTATTAAATTTAA
Found at i:65836989 original size:13 final size:14
Alignment explanation
Indices: 65836971--65836999 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
65836961 CACAATTCAT
65836971 TTAATATTT-TATA
1 TTAATATTTATATA
65836984 TTAATATTTATATA
1 TTAATATTTATATA
65836998 TT
1 TT
65837000 TTATTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TTAATATTTATATA
Found at i:65837015 original size:22 final size:20
Alignment explanation
Indices: 65836969--65837016 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 20
65836959 TTCACAATTC
65836969 ATTTAATATTTTATATTAAT
1 ATTTAATATTTTATATTAAT
65836989 ATTTATATATTTTATTATTAAT
1 ATTTA-ATATTTTA-TATTAAT
*
65837011 TTTTAA
1 ATTTAA
65837017 AAAATTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 5 0.20
21 9 0.36
22 11 0.44
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTAATATTTTATATTAAT
Found at i:65837453 original size:17 final size:17
Alignment explanation
Indices: 65837431--65837464 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
65837421 GTCAATCCTG
65837431 TGTTTATCATTAGAGAA
1 TGTTTATCATTAGAGAA
*
65837448 TGTTTATTATTAGAGAA
1 TGTTTATCATTAGAGAA
65837465 GAGATTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.18, T:0.44
Consensus pattern (17 bp):
TGTTTATCATTAGAGAA
Found at i:65838604 original size:18 final size:19
Alignment explanation
Indices: 65838568--65838609 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
65838558 ACCAAAAAAT
65838568 AAAATTACAAGCCTAAATA-
1 AAAATTACAAGCC-AAATAC
65838587 AAAATTACAAGTCC-AATAC
1 AAAATTACAAG-CCAAATAC
65838606 AAAA
1 AAAA
65838610 AACTAGAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 4 0.19
19 15 0.71
20 2 0.10
ACGTcount: A:0.60, C:0.17, G:0.05, T:0.19
Consensus pattern (19 bp):
AAAATTACAAGCCAAATAC
Found at i:65838609 original size:19 final size:18
Alignment explanation
Indices: 65838564--65838602 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
65838554 CAAAACCAAA
65838564 AAAT-AAAATTACAAGCC
1 AAATAAAAATTACAAGCC
65838581 TAAATAAAAATTACAAGTCC
1 -AAATAAAAATTACAAG-CC
65838601 AA
1 AA
65838603 TACAAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 13 0.68
20 2 0.11
ACGTcount: A:0.59, C:0.15, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAAATTACAAGCC
Found at i:65840295 original size:40 final size:39
Alignment explanation
Indices: 65840230--65840361 Score: 142
Period size: 37 Copynumber: 3.4 Consensus size: 39
65840220 AGTTTGGCAT
* *
65840230 CCAGTGTCTCATCAGATAATTCGAAGTAATAAATTGACAC
1 CCAGTGTCTCATCGGATAATCCGAAGT-ATAAATTGACAC
* * *
65840270 CCAGTGTCTCATCGGCTAAACCGAAG--TAAATTGGCAC
1 CCAGTGTCTCATCGGATAATCCGAAGTATAAATTGACAC
* * *
65840307 CCAGTGCCTCATCGAATTAATCTGAAGTAGTAAATTGACAC
1 CCAGTGTCTCATCGGA-TAATCCGAAGTA-TAAATTGACAC
*
65840348 CTAGTGTCTCATCG
1 CCAGTGTCTCATCG
65840362 AATCGAAGTC
Statistics
Matches: 75, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
37 23 0.31
38 8 0.11
40 22 0.29
41 22 0.29
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (39 bp):
CCAGTGTCTCATCGGATAATCCGAAGTATAAATTGACAC
Found at i:65840309 original size:37 final size:38
Alignment explanation
Indices: 65840223--65840361 Score: 118
Period size: 40 Copynumber: 3.6 Consensus size: 38
65840213 ACACACCAGT
* * **
65840223 TTGGCATCCAGTGTCTCATCAGATAATTCGAAGTAATAAA
1 TTGGCACCCAGTGTCTCATCGGATAAACCGAAG--ATAAA
* *
65840263 TTGACACCCAGTGTCTCATCGGCTAAACCGAAG-TAAA
1 TTGGCACCCAGTGTCTCATCGGATAAACCGAAGATAAA
* * * *
65840300 TTGGCACCCAGTGCCTCATCGAATTAATCTGAAGTAGTAAA
1 TTGGCACCCAGTGTCTCATCGGA-TAAACCGAAG-A-TAAA
* *
65840341 TTGACACCTAGTGTCTCATCG
1 TTGGCACCCAGTGTCTCATCG
65840362 AATCGAAGTC
Statistics
Matches: 80, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
37 23 0.29
38 8 0.10
40 27 0.34
41 22 0.28
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (38 bp):
TTGGCACCCAGTGTCTCATCGGATAAACCGAAGATAAA
Found at i:65840359 original size:41 final size:41
Alignment explanation
Indices: 65840230--65840364 Score: 131
Period size: 41 Copynumber: 3.4 Consensus size: 41
65840220 AGTTTGGCAT
*
65840230 CCAGTGTCTCATC-AGA-TAAT-TCGAAGTAATAAATTGACAC
1 CCAGTGTCTCATCGA-ATTAATCT-GAAGTAGTAAATTGACAC
** * * *
65840270 CCAGTGTCTCATCG-GCTAAACCG-A--AGTAAATTGGCAC
1 CCAGTGTCTCATCGAATTAATCTGAAGTAGTAAATTGACAC
*
65840307 CCAGTGCCTCATCGAATTAATCTGAAGTAGTAAATTGACAC
1 CCAGTGTCTCATCGAATTAATCTGAAGTAGTAAATTGACAC
*
65840348 CTAGTGTCTCATCGAAT
1 CCAGTGTCTCATCGAAT
65840365 CGAAGTCAAA
Statistics
Matches: 75, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
37 24 0.32
38 5 0.07
39 2 0.03
40 17 0.23
41 27 0.36
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (41 bp):
CCAGTGTCTCATCGAATTAATCTGAAGTAGTAAATTGACAC
Found at i:65841324 original size:35 final size:36
Alignment explanation
Indices: 65841278--65841368 Score: 98
Period size: 35 Copynumber: 2.6 Consensus size: 36
65841268 TTTATCATTA
* *
65841278 TAATATAATAATATATATACT-TA-ACTTTTAAGTTT
1 TAATATTATAATATATATACTATATA-TTTTAACTTT
* *
65841313 TAATATTATAATGT-TATAATATATATTTTAACTTT
1 TAATATTATAATATATATACTATATATTTTAACTTT
*
65841348 AAATATTTATAATATATATAC
1 TAATA-TTATAATATATATAC
65841369 ACTTATGCTC
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
34 5 0.11
35 27 0.60
36 9 0.20
37 4 0.09
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.49
Consensus pattern (36 bp):
TAATATTATAATATATATACTATATATTTTAACTTT
Found at i:65847914 original size:28 final size:28
Alignment explanation
Indices: 65847859--65847915 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
65847849 CTATTGGCTC
* * ***
65847859 ACATACCTATGCATGTTTCTTTTTTTCA
1 ACATACCTAGGCATGTTGCTTCAATTCA
65847887 ACATACCTAGGCATGTTGCTTCAATTCA
1 ACATACCTAGGCATGTTGCTTCAATTCA
65847915 A
1 A
65847916 TGATTGGATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.40
Consensus pattern (28 bp):
ACATACCTAGGCATGTTGCTTCAATTCA
Found at i:65848842 original size:4 final size:4
Alignment explanation
Indices: 65848833--65848860 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
65848823 GTACATATCT
65848833 TTAA TTAA TTAA TTAA TTAA TTAA TTAA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA
65848861 AAGGAAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TTAA
Found at i:65849712 original size:22 final size:22
Alignment explanation
Indices: 65849687--65849734 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
65849677 ACCTTGATTT
*
65849687 TATTAATTTTTTAAATATAAAA
1 TATTAATATTTTAAATATAAAA
* *
65849709 TATT--TATTTTATATATAAAT
1 TATTAATATTTTAAATATAAAA
65849729 TATTAA
1 TATTAA
65849735 AAAAATAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
20 17 0.81
22 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TATTAATATTTTAAATATAAAA
Found at i:65849724 original size:20 final size:20
Alignment explanation
Indices: 65849695--65849732 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
65849685 TTTATTAATT
65849695 TTTTAAATATAAAATATTTA
1 TTTTAAATATAAAATATTTA
* *
65849715 TTTTATATATAAATTATT
1 TTTTAAATATAAAATATT
65849733 AAAAAAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTTAAATATAAAATATTTA
Found at i:65854982 original size:29 final size:30
Alignment explanation
Indices: 65854919--65854998 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
65854909 ATACTAAAAC
* *
65854919 TATACATGAACTATGATTTAATGTGCAATTG
1 TATATATGAACTTTGATTT-ATGTGCAATTG
* *
65854950 TATATATGAACTTTGATTT-TGTGTAATTT
1 TATATATGAACTTTGATTTATGTGCAATTG
*
65854979 TATATATAGAATTTTGATTT
1 TATATAT-GAACTTTGATTT
65854999 GATCAAATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 15 0.35
30 11 0.26
31 17 0.40
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.49
Consensus pattern (30 bp):
TATATATGAACTTTGATTTATGTGCAATTG
Found at i:65855216 original size:29 final size:30
Alignment explanation
Indices: 65855132--65855221 Score: 101
Period size: 31 Copynumber: 3.0 Consensus size: 30
65855122 TGTATGATTA
* *
65855132 AATCAAAATTAAAGTTTAAAGTATATATTTG
1 AATC-AAATTAAAGTTTAATGTATATAATTG
* * *
65855163 AATCACAATTAGAGTTTCATATATATAATTG
1 AATCA-AATTAAAGTTTAATGTATATAATTG
*
65855194 CATCAAATTAAAGTTT-ATGTATATAATT
1 AATCAAATTAAAGTTTAATGTATATAATT
65855222 ACACATTAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
29 11 0.22
30 11 0.22
31 28 0.56
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (30 bp):
AATCAAATTAAAGTTTAATGTATATAATTG
Found at i:65856229 original size:20 final size:20
Alignment explanation
Indices: 65856204--65856243 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
65856194 TTGAATTGTA
*
65856204 AAAATTATCTTGAATTTTTT
1 AAAATTATCTTAAATTTTTT
*
65856224 AAAATTATTTTAAATTTTTT
1 AAAATTATCTTAAATTTTTT
65856244 GTTGAGAGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (20 bp):
AAAATTATCTTAAATTTTTT
Found at i:65856339 original size:9 final size:9
Alignment explanation
Indices: 65856311--65856349 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
65856301 ACACCAATAT
65856311 ATTATTCGA
1 ATTATTCGA
*
65856320 ATCATTCGA
1 ATTATTCGA
*
65856329 ATTATTTGA
1 ATTATTCGA
*
65856338 ATTATTTGA
1 ATTATTCGA
65856347 ATT
1 ATT
65856350 GCAAAATTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (9 bp):
ATTATTCGA
Found at i:65858994 original size:15 final size:16
Alignment explanation
Indices: 65858962--65859000 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
65858952 TTAGTCACTT
65858962 AAAATTTATAAAATTA
1 AAAATTTATAAAATTA
* *
65858978 AAAATTTATATAATAA
1 AAAATTTATAAAATTA
65858994 AAAATTT
1 AAAATTT
65859001 CTATTTTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAATTTATAAAATTA
Found at i:65863130 original size:27 final size:27
Alignment explanation
Indices: 65863077--65863132 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
65863067 TATGTTGTTG
*
65863077 ATGATGAAGATGAGGAGGAAGAAGAAA
1 ATGATGAAGATGAGGAAGAAGAAGAAA
** * *
65863104 ATGATGAAGATTTGGAAGAGGAGGAAA
1 ATGATGAAGATGAGGAAGAAGAAGAAA
65863131 AT
1 AT
65863133 CGTAACCGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (27 bp):
ATGATGAAGATGAGGAAGAAGAAGAAA
Found at i:65871636 original size:23 final size:24
Alignment explanation
Indices: 65871597--65871642 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 24
65871587 ATTATATATT
65871597 AAATATATATTTTTATTTTTAATC
1 AAATATATATTTTTATTTTTAATC
65871621 AAATATAT-TTTTTATTTTTAAT
1 AAATATATATTTTTATTTTTAAT
65871643 TTAGATTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
AAATATATATTTTTATTTTTAATC
Found at i:65892265 original size:3 final size:3
Alignment explanation
Indices: 65892259--65892317 Score: 75
Period size: 3 Copynumber: 19.3 Consensus size: 3
65892249 TTTATTCATC
* *
65892259 ATT ATT ATT ATT ATT ATT ATT GTT ATT -TAT ATT ATT ATT ATA ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT
65892304 ATCT ATT ATT ATT A
1 AT-T ATT ATT ATT A
65892318 GCGTAAGCAC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
2 1 0.02
3 44 0.90
4 4 0.08
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:65900110 original size:14 final size:16
Alignment explanation
Indices: 65900071--65900121 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
65900061 TTTGAGTTTT
65900071 TTTTTATATAGTAAAG
1 TTTTTATATAGTAAAG
65900087 TTTTTATATAGTAAAG
1 TTTTTATATAGTAAAG
*
65900103 TTTTTATATATTAAAG
1 TTTTTATATAGTAAAG
65900119 TTT
1 TTT
65900122 CAGTTTTGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (16 bp):
TTTTTATATAGTAAAG
Found at i:65902122 original size:33 final size:33
Alignment explanation
Indices: 65902076--65902141 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
65902066 TAAATTTTGT
* *
65902076 TTAAAATTTATTAAATAACAATTAATTAATTAA
1 TTAAAACTGATTAAATAACAATTAATTAATTAA
** *
65902109 TTAAAACTGATTAAATATTAATTAATTATTTAA
1 TTAAAACTGATTAAATAACAATTAATTAATTAA
65902142 ATTTTTTTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (33 bp):
TTAAAACTGATTAAATAACAATTAATTAATTAA
Found at i:65905396 original size:27 final size:25
Alignment explanation
Indices: 65905352--65905410 Score: 73
Period size: 27 Copynumber: 2.3 Consensus size: 25
65905342 TATATATTAT
* *
65905352 AAAAAACATGCAAGTATACTAGATA
1 AAAAAACATGCAAATATACTAAATA
*
65905377 AAAAAACATGCATATATATATTAAATA
1 AAAAAACATGCA-A-ATATACTAAATA
65905404 AAAAAAC
1 AAAAAAC
65905411 GACGCATGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 12 0.41
26 1 0.03
27 16 0.55
ACGTcount: A:0.61, C:0.10, G:0.07, T:0.22
Consensus pattern (25 bp):
AAAAAACATGCAAATATACTAAATA
Found at i:65905406 original size:25 final size:24
Alignment explanation
Indices: 65905340--65905407 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
65905330 CATATATATT
*
65905340 TATATATATTATAAAAAACATGCA
1 TATATATATTAAAAAAAACATGCA
*
65905364 -AGTATACTA-GATAAAAAAACATGCA
1 TA-TATA-TATTA-AAAAAAACATGCA
65905389 TATATATATTAAATAAAAA
1 TATATATATTAAA-AAAAA
65905408 AACGACGCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 11
0.71 0.06 0.22
Matches are distributed among these distances:
23 1 0.03
24 9 0.26
25 24 0.69
26 1 0.03
ACGTcount: A:0.57, C:0.07, G:0.06, T:0.29
Consensus pattern (24 bp):
TATATATATTAAAAAAAACATGCA
Found at i:65905430 original size:28 final size:27
Alignment explanation
Indices: 65905374--65905432 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
65905364 AGTATACTAG
* *
65905374 ATAAAAAAACATGCATATATATATTAA
1 ATAAAAAAACACGCATATATATATAAA
*
65905401 ATAAAAAAACGACGCATGTATGA-ATAAA
1 ATAAAAAAAC-ACGCATATAT-ATATAAA
65905429 ATAA
1 ATAA
65905433 TTATAATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 10 0.37
28 16 0.59
29 1 0.04
ACGTcount: A:0.59, C:0.08, G:0.08, T:0.24
Consensus pattern (27 bp):
ATAAAAAAACACGCATATATATATAAA
Found at i:65905498 original size:25 final size:27
Alignment explanation
Indices: 65905447--65905498 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 27
65905437 AATAATAATG
*
65905447 ATAATAATAATAAAAATCATAGTATAAC
1 ATAATAATAATAAAAA-CATAGAATAAC
*
65905475 ATAATTATAATAAAAA-AT-GAATAA
1 ATAATAATAATAAAAACATAGAATAA
65905499 AATAGTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 5 0.23
26 2 0.09
28 15 0.68
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (27 bp):
ATAATAATAATAAAAACATAGAATAAC
Found at i:65907058 original size:44 final size:44
Alignment explanation
Indices: 65906990--65907357 Score: 389
Period size: 44 Copynumber: 8.3 Consensus size: 44
65906980 AACTTCAGGG
* * *
65906990 AGACAAGATTTG-TATCTTCGATCTACTTCACGCCAGTACATGA
1 AGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGA
* * * * * ***
65907033 AGACAAGATCTGCTTTATTCGATCTATTTCGCCACCAGTATGGGA
1 AGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCCAATACATGA
* * * * ***
65907078 AGACAAGATCTG-TTATCTTTGATCGACTTCACCACCAGTATGGGA
1 AGACAAGATCTGCTT-TCTTCGATCTACTTCA-CGCCAATACATGA
* * * * ***
65907123 AGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGA
1 AGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCCAATACATGA
* * *
65907168 AGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAATACATGA
1 AGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGA
*
65907212 AGACAAGATTTGCTTTCTTCGATCTACTTCACGCCAATACATGA
1 AGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGA
65907256 AGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGA
1 AGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGA
* * * *
65907300 AAACAAGATCTACTTTCTTCGATCTACTTCATGTCAATACATGA
1 AGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGA
65907344 AGACAAGATCTGCT
1 AGACAAGATCTGCT
65907358 GCTTTTCAAC
Statistics
Matches: 284, Mismatches: 35, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
43 11 0.04
44 158 0.56
45 113 0.40
46 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (44 bp):
AGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGA
Found at i:65911783 original size:18 final size:18
Alignment explanation
Indices: 65911760--65911795 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
65911750 AACAATATGT
65911760 ATTCAGGAATTTGTTTGG
1 ATTCAGGAATTTGTTTGG
65911778 ATTCAGGAATTTGTTTGG
1 ATTCAGGAATTTGTTTGG
65911796 TGTAATATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.28, T:0.44
Consensus pattern (18 bp):
ATTCAGGAATTTGTTTGG
Found at i:65918757 original size:20 final size:21
Alignment explanation
Indices: 65918721--65918763 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
65918711 CTGGAGGCGT
65918721 TGGGTGCGACGTGGGGC-TGC
1 TGGGTGCGACGTGGGGCTTGC
*
65918741 TGGGTGCG-CTTGAGGGCTTGC
1 TGGGTGCGACGTG-GGGCTTGC
65918762 TG
1 TG
65918764 CGGCGCTCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 3 0.15
20 12 0.60
21 5 0.25
ACGTcount: A:0.05, C:0.19, G:0.51, T:0.26
Consensus pattern (21 bp):
TGGGTGCGACGTGGGGCTTGC
Found at i:65921827 original size:24 final size:24
Alignment explanation
Indices: 65921795--65921850 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
65921785 TAATGAAATT
* *
65921795 AAATAATAATATGTGATAAA-TCTA
1 AAATAATAATATATGAAAAACT-TA
65921819 AAATAATAATATATGAAAAACTTA
1 AAATAATAATATATGAAAAACTTA
65921843 AAATAATA
1 AAATAATA
65921851 GTACATGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 28 0.97
25 1 0.03
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.30
Consensus pattern (24 bp):
AAATAATAATATATGAAAAACTTA
Found at i:65921934 original size:3 final size:3
Alignment explanation
Indices: 65921928--65921989 Score: 61
Period size: 3 Copynumber: 20.7 Consensus size: 3
65921918 TAATAATTCC
* ** * * *
65921928 AAT AAT AAT AAT AAC AGC AAT AAT AAT AAT AAT AAT ACT AAC AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
65921976 AAC AAT AAT AAT AA
1 AAT AAT AAT AAT AA
65921990 AGATAATATT
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.63, C:0.08, G:0.03, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:65921938 original size:18 final size:18
Alignment explanation
Indices: 65921915--65921961 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
65921905 TAAATAAATG
*
65921915 TAATAATAATTCCAATAA
1 TAATAATAATACCAATAA
* *
65921933 TAATAATAACAGCAATAA
1 TAATAATAATACCAATAA
65921951 TAATAATAATA
1 TAATAATAATA
65921962 ATACTAACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.30
Consensus pattern (18 bp):
TAATAATAATACCAATAA
Found at i:65921955 original size:24 final size:25
Alignment explanation
Indices: 65921928--65921989 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 25
65921918 TAATAATTCC
*
65921928 AATAATAATAATAAC-AGCAATAAT
1 AATAATAATAATAACTAACAATAAT
*
65921952 AATAATAATAAT-ACTAACAATAGT
1 AATAATAATAATAACTAACAATAAT
*
65921976 AACAATAATAATAA
1 AATAATAATAATAA
65921990 AGATAATATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 2 0.06
24 30 0.91
25 1 0.03
ACGTcount: A:0.63, C:0.08, G:0.03, T:0.26
Consensus pattern (25 bp):
AATAATAATAATAACTAACAATAAT
Found at i:65922664 original size:15 final size:14
Alignment explanation
Indices: 65922636--65922688 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
65922626 AATTAAAAAT
65922636 AAAGAAAAAACAGA
1 AAAGAAAAAACAGA
*
65922650 AAAGAAAAATGCAGA
1 AAAGAAAAA-ACAGA
* *
65922665 AAAGAATAGAA-GGA
1 AAAGAA-AAAACAGA
65922679 AAAGAAAAAA
1 AAAGAAAAAA
65922689 AACCACCTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
13 3 0.09
14 17 0.53
15 10 0.31
16 2 0.06
ACGTcount: A:0.74, C:0.04, G:0.19, T:0.04
Consensus pattern (14 bp):
AAAGAAAAAACAGA
Found at i:65931963 original size:69 final size:69
Alignment explanation
Indices: 65931865--65932179 Score: 461
Period size: 69 Copynumber: 4.6 Consensus size: 69
65931855 TTAGACTTTC
* *
65931865 AAGGGCAGATATATTTCCAGAGAATTGATTAGAAGAGAGG-CACAAAGATTCAAGCAATGTTAGG
1 AAGGGCAGATATATTTCCAGAAAACTGATTAGAAGAGAGGTC-CAAAGATTCAAGCAATGTTAGG
65931929 CTCTG
65 CTCTG
* *
65931934 AAGGGCAGATATATTTCCAAAAAACTGATTAGAAGAGAGGTCCAAAGATGCAAGCAATGTTAGGC
1 AAGGGCAGATATATTTCCAGAAAACTGATTAGAAGAGAGGTCCAAAGATTCAAGCAATGTTAGGC
*
65931999 TCTT
66 TCTG
* *
65932003 AATGGCAGATATATTTCCAGAGAACTGATTAGAAGAGAGGTCCAAAGATTCAAGCAATGTTAGGC
1 AAGGGCAGATATATTTCCAGAAAACTGATTAGAAGAGAGGTCCAAAGATTCAAGCAATGTTAGGC
65932068 TCTG
66 TCTG
* * * *
65932072 AAGGGCAGATATATTTCCGGATAACTGATTAGAAGAGAGGTTCAAAGATTCAAGCAATTTTAGGC
1 AAGGGCAGATATATTTCCAGAAAACTGATTAGAAGAGAGGTCCAAAGATTCAAGCAATGTTAGGC
*
65932137 TCTT
66 TCTG
** * * *
65932141 AAGGATAGATATATTTTCGGAAAACTGATTGGAAGAGAG
1 AAGGGCAGATATATTTCCAGAAAACTGATTAGAAGAGAG
65932180 AGATAACATT
Statistics
Matches: 224, Mismatches: 21, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
69 223 1.00
70 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (69 bp):
AAGGGCAGATATATTTCCAGAAAACTGATTAGAAGAGAGGTCCAAAGATTCAAGCAATGTTAGGC
TCTG
Found at i:65941968 original size:3 final size:3
Alignment explanation
Indices: 65941960--65941991 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
65941950 TATGTTATAC
65941960 TAT TAT TAT TAT TAT TAT TAT TAT TAT CTAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT T
65941992 CATACATGCG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:65942042 original size:26 final size:25
Alignment explanation
Indices: 65942008--65942080 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 25
65941998 TGCGTCGTTC
*
65942008 TTTTATTTAATACATATATATGCATG
1 TTTTTTTTAATA-ATATATATGCATG
*
65942034 TTTTTTTTAACTAGTATACT-TGCATG
1 TTTTTTTTAA-TAATATA-TATGCATG
*
65942060 TTTTTTTAAATATATATATAT
1 TTTTTTTTAATA-ATATATAT
65942081 ATACATTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
25 3 0.08
26 33 0.85
27 3 0.08
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.55
Consensus pattern (25 bp):
TTTTTTTTAATAATATATATGCATG
Found at i:65944057 original size:19 final size:20
Alignment explanation
Indices: 65944018--65944057 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
65944008 TCTTTTCGTA
* *
65944018 TTCATTTCATGCATTTGCAT
1 TTCATTACATGCATATGCAT
65944038 TTCATTACAT-CATATGCAT
1 TTCATTACATGCATATGCAT
65944057 T
1 T
65944058 AAACACAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.47
Consensus pattern (20 bp):
TTCATTACATGCATATGCAT
Found at i:65945981 original size:20 final size:20
Alignment explanation
Indices: 65945952--65946001 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
65945942 CTTTGAGCAA
*
65945952 ATTTTCTTTCATTCTTTACG
1 ATTTTTTTTCATTCTTTACG
**
65945972 ATTTTTTTTCATTCTTTTGG
1 ATTTTTTTTCATTCTTTACG
65945992 ATTTTTTTTC
1 ATTTTTTTTC
65946002 CTGCCAAACC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.12, C:0.14, G:0.06, T:0.68
Consensus pattern (20 bp):
ATTTTTTTTCATTCTTTACG
Found at i:65946924 original size:7 final size:7
Alignment explanation
Indices: 65946900--65946954 Score: 58
Period size: 7 Copynumber: 7.6 Consensus size: 7
65946890 TTTGAGTCGA
65946900 AAAAATG
1 AAAAATG
*
65946907 ACAAGATG
1 A-AAAATG
65946915 AAAAATG
1 AAAAATG
65946922 AAAAAGTG
1 AAAAA-TG
65946930 -AAAATG
1 AAAAATG
*
65946936 AAAACTG
1 AAAAATG
65946943 AAAAATGG
1 AAAAAT-G
65946951 AAAA
1 AAAA
65946955 GTAAAGTGGA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
6 2 0.05
7 25 0.62
8 13 0.32
ACGTcount: A:0.65, C:0.04, G:0.18, T:0.13
Consensus pattern (7 bp):
AAAAATG
Found at i:65946931 original size:15 final size:14
Alignment explanation
Indices: 65946900--65946956 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 14
65946890 TTTGAGTCGA
*
65946900 AAAAATGACAAGATG
1 AAAAATGAAAAG-TG
65946915 AAAAATGAAAAAGTG
1 AAAAATG-AAAAGTG
*
65946930 -AAAATGAAAACTG
1 AAAAATGAAAAGTG
65946943 AAAAATGGAAAAGT
1 AAAAAT-GAAAAGT
65946957 AAAGTGGAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
13 6 0.17
14 11 0.31
15 15 0.42
16 4 0.11
ACGTcount: A:0.63, C:0.04, G:0.19, T:0.14
Consensus pattern (14 bp):
AAAAATGAAAAGTG
Found at i:65946954 original size:21 final size:21
Alignment explanation
Indices: 65946898--65946947 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
65946888 ACTTTGAGTC
*
65946898 GAAAAAATGACAAGATGAAAAAT
1 GAAAAAGTGA-AA-ATGAAAAAT
*
65946921 GAAAAAGTGAAAATGAAAACT
1 GAAAAAGTGAAAATGAAAAAT
65946942 GAAAAA
1 GAAAAA
65946948 TGGAAAAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 14 0.56
22 2 0.08
23 9 0.36
ACGTcount: A:0.66, C:0.04, G:0.18, T:0.12
Consensus pattern (21 bp):
GAAAAAGTGAAAATGAAAAAT
Found at i:65948472 original size:133 final size:134
Alignment explanation
Indices: 65948234--65948736 Score: 543
Period size: 133 Copynumber: 3.8 Consensus size: 134
65948224 AGCAGGTTGA
* ** * *
65948234 AAAGATAGCAGATCTTGTCTT--CAT-GTATTGGCATGAAGTAGATCAAAGATAGCAGATCTTGT
1 AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGC--GAAGTAGATCAAAGAAAACAGATCTTGT
* * * *
65948296 CTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTAGCGTGAAG
64 CTTCACATACTGGTCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAG
65948361 TAGATC
129 TAGATC
*
65948367 AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCT
1 AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAACAGATCTTGTCT
** * * *
65948432 TCATGTATTGG-CGTAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTA
66 TCACATACTGGTCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
65948496 GATC
131 GATC
* * *
65948500 AAAGATAGTAGATC-TGATCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATATTGTC
1 AAAGATAGCAGATCTTG-TCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAACAGATCTTGTC
** * * * *** * * *
65948564 TTCATGTATTGG-CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAG
65 TTCACATACTGGTCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAG
65948628 TAGATC
129 TAGATC
* * *** * * * * * *
65948634 CAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAGCATATCTTGTCT
1 AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAACAGATCTTGTCT
* *
65948698 TCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATC
66 TCACATACTGGTCGTGAAGTAGATCGAAGAAAGCAGATC
65948737 GAAGATGGCG
Statistics
Matches: 315, Mismatches: 48, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
132 2 0.01
133 214 0.68
134 89 0.28
135 5 0.02
136 5 0.02
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (134 bp):
AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAACAGATCTTGTCT
TCACATACTGGTCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
GATC
Found at i:65948540 original size:89 final size:89
Alignment explanation
Indices: 65948234--65948736 Score: 518
Period size: 89 Copynumber: 5.7 Consensus size: 89
65948224 AGCAGGTTGA
* ** * *
65948234 AAAGATAGCAGATCTTGTCTT--CAT-GTATTGGCATGAAGTAGATCAAAGATAGCAGATCTTGT
1 AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGC--GAAGTAGATCGAAGAAAGCAGATCTTGT
*** * *
65948296 CTTCCCATACTGGTGGTGAAGTAGATC
64 CTTCATGTATTGG-CGTGAAGTAGATC
* * * *** * * * * * *
65948323 GAAGAAAACAGATCTTGTCTTCATGTATTAG-CGTGAAGTAGATCAAAGATAGCAGATCTTGTCT
1 AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
*** * * *
65948387 TCCCATACTGGTGGCGAAGTAGATC
66 TCATGTATTGG-CGTGAAGTAGATC
* * * * **
65948412 GAAGAAAACAGATCTTGTCTT--CAT-GTATTGGCGTAAAGTAGATCGAAGAAAGCAGATCTTGT
1 AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCG--AAGTAGATCGAAGAAAGCAGATCTTGT
*
65948474 CTTCATGTATTGGCATGAAGTAGATC
64 CTTCATGTATTGGCGTGAAGTAGATC
* * *
65948500 AAAGATAGTAGATC-TGATCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATATTGTC
1 AAAGATAGCAGATCTTG-TCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTC
65948564 TTCATGTATTGGCGTGAAGTAGATC
65 TTCATGTATTGGCGTGAAGTAGATC
*
65948589 AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCCAAGAAAGCAGATCTTGTCT
1 AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
65948654 TCATGTATTGGCGTGAAGTAGATC
66 TCATGTATTGGCGTGAAGTAGATC
* *
65948678 AAAGATAGCATATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATC
1 AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATC
65948737 GAAGATGGCG
Statistics
Matches: 361, Mismatches: 42, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
86 2 0.01
87 5 0.01
88 24 0.07
89 315 0.87
90 5 0.01
91 8 0.02
92 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (89 bp):
AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
TCATGTATTGGCGTGAAGTAGATC
Found at i:65948626 original size:222 final size:222
Alignment explanation
Indices: 65948234--65948699 Score: 826
Period size: 222 Copynumber: 2.1 Consensus size: 222
65948224 AGCAGGTTGA
65948234 AAAGATAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATAGCAGATCTTGTCTT
1 AAAGATAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATAGCAGATCTTGTCTT
* *
65948299 CCCATACTGGTGGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTAGCGTGAAGTAG
66 CCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATATTGTCTTCATGTATTAGCGTGAAGTAG
*
65948364 ATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTG
131 ATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCCAAGAAAACAGATCTTG
65948429 TCTTCATGTATTGGCGTAAAGTAGATC
196 TCTTCATGTATTGGCGTAAAGTAGATC
* * *
65948456 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATAGTAGATC-TGATCT
1 AAAGATAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATAGCAGATCTTG-TCT
*
65948520 TCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATATTGTCTTCATGTATTGGCGTGAAGTA
65 TCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATATTGTCTTCATGTATTAGCGTGAAGTA
*
65948585 GATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCCAAGAAAGCAGATCTT
130 GATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCCAAGAAAACAGATCTT
*
65948650 GTCTTCATGTATTGGCGTGAAGTAGATC
195 GTCTTCATGTATTGGCGTAAAGTAGATC
*
65948678 AAAGATAGCATATCTTGTCTTC
1 AAAGATAGCAGATCTTGTCTTC
65948700 CCATACTGGT
Statistics
Matches: 231, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
221 2 0.01
222 229 0.99
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (222 bp):
AAAGATAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATAGCAGATCTTGTCTT
CCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATATTGTCTTCATGTATTAGCGTGAAGTAG
ATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCCAAGAAAACAGATCTTG
TCTTCATGTATTGGCGTAAAGTAGATC
Found at i:65948985 original size:44 final size:44
Alignment explanation
Indices: 65948931--65949124 Score: 171
Period size: 44 Copynumber: 4.4 Consensus size: 44
65948921 TATCTTCTTG
65948931 GGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA
1 GGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA
* * * ** * *
65948975 GGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGA
1 GGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCT-A
* * * * * *
65949020 GGTTA-CAGTGGAGTACATTGAAGCCAATA-A-TTC-TATCTCCCTG
1 GG-CAGCAGTGGAATAGATTGAAG--ATTACAGATCTTATCTCCCTA
*
65949063 GGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA
1 GGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA
* * *
65949107 AGCAGTAGTGGAACAGAT
1 GGCAGCAGTGGAATAGAT
65949125 CAAAGATGGA
Statistics
Matches: 114, Mismatches: 28, Indels: 16
0.72 0.18 0.10
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 20 0.18
44 67 0.59
45 19 0.17
46 2 0.02
47 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (44 bp):
GGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA
Found at i:65949083 original size:43 final size:44
Alignment explanation
Indices: 65948892--65949085 Score: 126
Period size: 44 Copynumber: 4.4 Consensus size: 44
65948882 CCCTGAGGTT
* * *
65948892 ACAGTGGAGTACATTGAAGCCAGTA-ATTCTATCTTCTTGGGCA
1 ACAGTGGAGTAGATTGAAGCCAGTACATTCTATCTCCCTGGGCA
* * * * *
65948935 GCAGTGGAATAGATTGAAG--ATTACAGATCTTATCTCCCTAGGCA
1 ACAGTGGAGTAGATTGAAGCCAGTACA-TTC-TATCTCCCTGGGCA
** * *** * * * * **
65948979 GTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTT
1 ACAGTGGAGTAGATTGAAGCCAGTACATTCTATCTCCCTG-GGCA
* *
65949024 ACAGTGGAGTACATTGAAGCCAATA-ATTCTATCTCCCTGGGCA
1 ACAGTGGAGTAGATTGAAGCCAGTACATTCTATCTCCCTGGGCA
*
65949067 ACAGTGGAATAGATTGAAG
1 ACAGTGGAGTAGATTGAAG
65949086 ATTACAGATC
Statistics
Matches: 109, Mismatches: 36, Indels: 12
0.69 0.23 0.08
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 37 0.34
44 47 0.43
45 19 0.17
46 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (44 bp):
ACAGTGGAGTAGATTGAAGCCAGTACATTCTATCTCCCTGGGCA
Found at i:65949192 original size:132 final size:132
Alignment explanation
Indices: 65948729--65949193 Score: 712
Period size: 132 Copynumber: 3.6 Consensus size: 132
65948719 GATCGAAGAA
* *
65948729 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * * *
65948794 TCTATCTCCATAGGAAACAGTGCAATAGATTGAAGATT----A-C--ATCTCCCTAAGCAGTAGT
66 TCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGT
65948852 GG
131 GG
*
65948854 AGCAGATCGAAGCTGGC-GAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAA
1 AGCAGATCGAAGATGGCAG-ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAA
* * * *
65948918 TTCTATCTTCTTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAG
65 TTCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAG
65948983 TGG
130 TGG
* *
65948986 AGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
65949051 TCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGT
66 TCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGT
65949116 GG
131 GG
* * * *
65949118 AACAGATCAAAGATGGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
65949183 TCTATCTCCCT
66 TCTATCTCCCT
65949194 AGTCGGCAGT
Statistics
Matches: 309, Mismatches: 22, Indels: 11
0.90 0.06 0.03
Matches are distributed among these distances:
124 1 0.00
125 93 0.30
129 1 0.00
130 1 0.00
132 212 0.69
133 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
TCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:65949257 original size:132 final size:132
Alignment explanation
Indices: 65948732--65949526 Score: 509
Period size: 132 Copynumber: 6.1 Consensus size: 132
65948722 CGAAGAAAGC
* ** *
65948732 AGATCGAAGATGGCGGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATAGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * * * * * * * * **
65948797 ATCTCCATAGG-AAACAGTGCAATAGATTGAAGATTA-C--ATC-T-CCCT-AAGCA--GTAGTG
66 ATCTCCCT-GGTCAGCAGTGGAATAGATCGAAGA-TAGCAGATCTTGTCTTCATGTATTGGCGTG
* *
65948853 GAGC
129 AAGT
* **
65948857 AGATCGAAGCT-GGCGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
1 AGATCGAAGATAGAAG-ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
* * * * * * * * **
65948921 TATCTTCTTGGGCAGCAGTGGAATAGATTGAAGATTA-CAGATCTTATCTCCCTAGGCA--GTAG
65 TATCTCCCTGGTCAGCAGTGGAATAGATCGAAGA-TAGCAGATCTTGTCT-TC-ATGTATTGGCG
*
65948983 TGGAGT
127 TGAAGT
* * *
65948989 AGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCT
1 AGATCGAAGATAGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * * * * * * * * *
65949054 ATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTA-CAGATCTTATCTCCCTAAGCAGTAGTG-
66 ATCTCCCTGGTCAGCAGTGGAATAGATCGAAGA-TAGCAGATCTTGTCT-TC-ATGTATTGGCGT
*
65949117 GAA-C
128 GAAGT
* * *
65949121 AGATCAAAGATGGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGTAATTCT
1 AGATCGAAGATAGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * * * *
65949186 ATCTCCCTAGTCGGCAGTGGAATCGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAA
66 ATCTCCCTGGTCAGCAGTGGAATAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAA
65949251 GT
131 GT
* * * ** * * * * * * ** *
65949253 AGATCGAAGAAAGCAGATCTTGTCTTCATGTA--TTGGCA-TGAAGTAGATCGAAGAAAGCAGA-
1 AGATCGAAGATAGAAGATTTTACCTCCCTG-AGGTT-ACAGTGGAGTACATTGAAGCCAGTA-AT
* * * * ** * *** *
65949314 TCTTGTCTTCATGTATTGGCA-TGAAATAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGT
63 TC-TATCTCCCTG-GTCAGCAGTGGAATAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG-
* *
65949378 GGCGAAGT
125 CGTGAAGT
* * *
65949386 AGATCGAAGATACAAG-TTTTACCTCCCTGAGGTTGCAGTGGAGTATATTGAAGCCAGTAATTCT
1 AGATCGAAGATAGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * * * *
65949450 ATCTCCTTGGTCAGTAGTGGAATCGATCGAAGAAAGCAGATCATGTCTTCATGTATTGGCGTGAA
66 ATCTCCCTGGTCAGCAGTGGAATAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAA
65949515 GT
131 GT
65949517 AGATCGAAGA
1 AGATCGAAGA
65949527 AAGTAGATCT
Statistics
Matches: 534, Mismatches: 110, Indels: 46
0.77 0.16 0.07
Matches are distributed among these distances:
124 4 0.01
125 87 0.16
127 3 0.01
128 1 0.00
129 1 0.00
130 6 0.01
131 44 0.08
132 339 0.63
133 48 0.09
134 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (132 bp):
AGATCGAAGATAGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
ATCTCCCTGGTCAGCAGTGGAATAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAA
GT
Found at i:65949259 original size:264 final size:263
Alignment explanation
Indices: 65948732--65949526 Score: 756
Period size: 264 Copynumber: 3.0 Consensus size: 263
65948722 CGAAGAAAGC
* *
65948732 AGATCGAAGATGGCGGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTAC-ATGGAGTACATTGAAGCCAATAATTCT
* *
65948797 ATCTCCATAGGAAACAGTGCAATAGATTGAAGATT----A-C--ATCTCCCTAAGCAGTAGTGGA
65 ATCTCCATGGGAAACAGTGAAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGA
* * * *
65948855 GCAGATCGAAGCTGG-CGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
130 ACAGATCGAAGATGGAAG-ATTTTACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGTAAT
* * * * * * * * * * *
65948919 TCTATCTTCTTGGGCAGCAGTGGAATAGATTGAAGATTA-CAGATCTTATCTCCCTAGGCA--GT
194 TCTATCTCCTTGGTCAGCAGTGGAATCGATCGAAGA-AAGCAGATATTGTCT-TC-ATGTATTGG
* *
65948981 AGTGGAGT
256 CGTGAAGT
65948989 AGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACA-TGGAGTACATTGAAGCCAATAATTCT
* * *
65949054 ATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGA
65 ATCTCCATGGGAAACAGTGAAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGA
*
65949119 ACAGATCAAAGATGGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGTAATT
130 ACAGATCGAAGATGGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGTAATT
* * *
65949184 CTATCTCCCTAGTCGGCAGTGGAATCGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTG
195 CTATCTCCTTGGTCAGCAGTGGAATCGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTG
65949249 AAGT
260 AAGT
** * ** * * * * * * * *
65949253 AGATCGAAGAAAGCAGATCTTGTCTTCATGTA--TTGGCATGAAGTAGATCGAAG-AAAGCAGA-
1 AGATCGAAGATGGCAGATTTTACCTCCCTG-AGGTT-ACATGGAGTACATTGAAGCCAA-TA-AT
* * * ** * *
65949314 TCTTGTCTTCAT-GTATTGGCA-TGAAATAGATCGAAGA-TAGCAGATCTTGTCTTCCC-ATA-C
62 TC-TATCTCCATGGGA--AACAGTGAAATAGATTGAAGATTA-CAGATCTTATC-TCCCTA-AGC
* * ** *
65949374 --TGGTGGCGAAGTAGATCGAAGATACAAG-TTTTACCTCCCTGAGGTTGCAGTGGAGTATATTG
121 AGTAGT-G-GAA-CAGATCGAAGATGGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTATATTG
*
65949436 AAGCCAGTAATTCTATCTCCTTGGTCAGTAGTGGAATCGATCGAAGAAAGCAGATCA-TGTCTTC
183 AAGCCAGTAATTCTATCTCCTTGGTCAGCAGTGGAATCGATCGAAGAAAGCAGAT-ATTGTCTTC
65949500 ATGTATTGGCGTGAAGT
247 ATGTATTGGCGTGAAGT
65949517 AGATCGAAGA
1 AGATCGAAGA
65949527 AAGTAGATCT
Statistics
Matches: 452, Mismatches: 60, Indels: 45
0.81 0.11 0.08
Matches are distributed among these distances:
256 1 0.00
257 92 0.20
261 1 0.00
262 9 0.02
263 23 0.05
264 303 0.67
265 23 0.05
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (263 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACATGGAGTACATTGAAGCCAATAATTCTA
TCTCCATGGGAAACAGTGAAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAA
CAGATCGAAGATGGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGTAATTC
TATCTCCTTGGTCAGCAGTGGAATCGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGA
AGT
Found at i:65949276 original size:44 final size:44
Alignment explanation
Indices: 65949210--65949631 Score: 392
Period size: 44 Copynumber: 9.6 Consensus size: 44
65949200 CAGTGGAATC
*
65949210 GATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
*
65949254 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
* *
65949298 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAATA
1 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
* *** * * *
65949342 GATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTA
* * ** * * *
65949387 GATCGAAGATA-CA-AGTTTTACCTCCCTG-AGGTT-GCAGTGGAGTA
1 GATCGAAGAAAGCAGA-TCTTGTCTTCATGTA--TTGGC-GTGAAGTA
* * ** * * * * * * * *
65949431 TATTGAAGCCAGTA-AT-TCTATCTCCTTGGTCAGTAGTG-GAA-TC
1 GATCGAAGAAAGCAGATCT-TGTCTTCAT-GT-ATTGGCGTGAAGTA
*
65949474 GATCGAAGAAAGCAGATCATGTCTTCATGTATTGGCGTGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
* *
65949518 GATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCATGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
* *
65949562 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCATGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
*
65949606 GATCGAAGATAGCAGATCTTGTCTTC
1 GATCGAAGAAAGCAGATCTTGTCTTC
65949632 CCATACTGGT
Statistics
Matches: 311, Mismatches: 52, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
42 4 0.01
43 18 0.06
44 265 0.85
45 22 0.07
46 1 0.00
47 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (44 bp):
GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
Found at i:65949544 original size:264 final size:264
Alignment explanation
Indices: 65949138--65949689 Score: 982
Period size: 264 Copynumber: 2.1 Consensus size: 264
65949128 AGATGGAAGA
* *
65949138 TTTTACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGTAATTCTATCTCCCTAGTCGGCAG
1 TTTTACCTCCCTGAGGTTGCAGTGGAGTATATTGAAGCCAGTAATTCTATCTCCCTAGTCAGCAG
65949203 TGGAATCGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGCA
66 TGGAATCGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGCA
*
65949268 GATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
131 GATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAG
65949333 CATGAAATAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATA
196 CATGAAATAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATA
65949398 CAAG
261 CAAG
* * *
65949402 TTTTACCTCCCTGAGGTTGCAGTGGAGTATATTGAAGCCAGTAATTCTATCTCCTTGGTCAGTAG
1 TTTTACCTCCCTGAGGTTGCAGTGGAGTATATTGAAGCCAGTAATTCTATCTCCCTAGTCAGCAG
*
65949467 TGGAATCGATCGAAGAAAGCAGATCA-TGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGT
66 TGGAATCGATCGAAGAAAGCAGAT-ATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGC
65949531 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTA
130 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTA
*
65949596 GCATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAT
195 GCATGAAATAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAT
65949661 ACAAG
260 ACAAG
* * *
65949666 TCTTATCT-CCTGAAGTTGCAGTGG
1 TTTTACCTCCCTGAGGTTGCAGTGG
65949690 GCAGATTAAA
Statistics
Matches: 276, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
263 15 0.05
264 260 0.94
265 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (264 bp):
TTTTACCTCCCTGAGGTTGCAGTGGAGTATATTGAAGCCAGTAATTCTATCTCCCTAGTCAGCAG
TGGAATCGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGCA
GATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAG
CATGAAATAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGATA
CAAG
Found at i:65951105 original size:3 final size:3
Alignment explanation
Indices: 65951097--65951131 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
65951087 TATGTTATAC
65951097 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CTAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT T
65951132 CATACATGCG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:65951182 original size:26 final size:26
Alignment explanation
Indices: 65951148--65951220 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
65951138 TGCGTCGTTC
*
65951148 TTTTATTTAATACATATATATGCATG
1 TTTTTTTTAATACATATATATGCATG
* *
65951174 TTTTTTTT-A-ACTTGTATACTTGCATG
1 TTTTTTTTAATACATATATA--TGCATG
* *
65951200 TTTTTTTAAATATATATATAT
1 TTTTTTTTAATACATATATAT
65951221 ATACATTTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
24 7 0.19
25 1 0.03
26 21 0.58
27 1 0.03
28 6 0.17
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (26 bp):
TTTTTTTTAATACATATATATGCATG
Found at i:65964533 original size:103 final size:106
Alignment explanation
Indices: 65964277--65964593 Score: 588
Period size: 105 Copynumber: 3.0 Consensus size: 106
65964267 ACAAGGTGAA
65964277 TCACCTTCTAAAGCCCCCTTTTTTATTTCTTTCAATTTTTTCAAAAGCCGAATCTTCTCTTTTTT
1 TCACCTTCTAAAG-CCCCTTTTTTATTTCTTTCAATTTTTTCAAAAGCCGAATCTTCTCTTTTTT
65964342 GTTACAAAAGTCCCCCCTCCTTTTTTTGTTTCTC-TTTTTTT
65 GTTACAAAAGTCCCCCCTCCTTTTTTTGTTTCTCTTTTTTTT
65964383 TCACCTTCTAAAGCCCCTTTTTTATTTCTTTCAATTTTTTCAAAAGCCGAATCTTCTCTTTTTTG
1 TCACCTTCTAAAGCCCCTTTTTTATTTCTTTCAATTTTTTCAAAAGCCGAATCTTCTCTTTTTTG
65964448 TTAC-AAAGT-CCCCCTCCTTTTTTTGTTTCTCTTTTTTTT
66 TTACAAAAGTCCCCCCTCCTTTTTTTGTTTCTCTTTTTTTT
*
65964487 TCACCTTCTAAAG-CCCTTTTTTATTTCTTTCAATTTTTTCAAAAGCCGAATCTTCTTTTTTTTG
1 TCACCTTCTAAAGCCCCTTTTTTATTTCTTTCAATTTTTTCAAAAGCCGAATCTTCTCTTTTTTG
65964551 TTACAAAAGTCCCCCCTCCTTTTTTTGTTTCTCTTTTTTTT
66 TTACAAAAGTCCCCCCTCCTTTTTTTGTTTCTCTTTTTTTT
65964592 TC
1 TC
65964594 CCCCCTGGTC
Statistics
Matches: 207, Mismatches: 1, Indels: 7
0.96 0.00 0.03
Matches are distributed among these distances:
103 76 0.37
104 30 0.14
105 88 0.43
106 13 0.06
ACGTcount: A:0.17, C:0.25, G:0.06, T:0.52
Consensus pattern (106 bp):
TCACCTTCTAAAGCCCCTTTTTTATTTCTTTCAATTTTTTCAAAAGCCGAATCTTCTCTTTTTTG
TTACAAAAGTCCCCCCTCCTTTTTTTGTTTCTCTTTTTTTT
Found at i:65964633 original size:103 final size:99
Alignment explanation
Indices: 65964312--65964593 Score: 392
Period size: 103 Copynumber: 2.7 Consensus size: 99
65964302 TTTCTTTCAA
65964312 TTTTTTCAAAAGCCGAATCTTCTCTTTTTTGTTACAAAAGTCCCCCCTCCTTTTTTTGTTTCTC-
1 TTTTTTCAAAAGCCGAATCTTCTCTTTTTTGTTACAAAAGTCCCCCCTCCTTTTTTTGTTTCTCT
*
65964376 TTTTTTTTCACCTTCTAAAGCCCCTTTTTTATTTCTTTC
66 TTTTTTTTCACCTTCT-AAGCCCATTTTTTA----TTTC
65964415 AATTTTTTCAAAAGCCGAATCTTCTCTTTTTTGTTAC-AAAGT-CCCCCTCCTTTTTTTGTTTCT
1 --TTTTTTCAAAAGCCGAATCTTCTCTTTTTTGTTACAAAAGTCCCCCCTCCTTTTTTTGTTTCT
65964478 CTTTTTTTTTCACCTTCTAAAGCCC-TTTTTTATTTCTTTC
64 CTTTTTTTTTCACCTTCT-AAGCCCATTTTTTA----TTTC
*
65964518 AATTTTTTCAAAAGCCGAATCTTCTTTTTTTTGTTACAAAAGTCCCCCCTCCTTTTTTTGTTTCT
1 --TTTTTTCAAAAGCCGAATCTTCTCTTTTTTGTTACAAAAGTCCCCCCTCCTTTTTTTGTTTCT
65964583 CTTTTTTTTTC
64 CTTTTTTTTTC
65964594 CCCCCTGGTC
Statistics
Matches: 173, Mismatches: 1, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
103 73 0.42
104 33 0.19
105 67 0.39
ACGTcount: A:0.16, C:0.24, G:0.06, T:0.53
Consensus pattern (99 bp):
TTTTTTCAAAAGCCGAATCTTCTCTTTTTTGTTACAAAAGTCCCCCCTCCTTTTTTTGTTTCTCT
TTTTTTTTCACCTTCTAAGCCCATTTTTTATTTC
Found at i:65965248 original size:44 final size:44
Alignment explanation
Indices: 65965185--65965953 Score: 226
Period size: 44 Copynumber: 16.7 Consensus size: 44
65965175 ATCTGATGTG
* *
65965185 ATCTACTCTACTGTAATCTCAGGCAGATAGGATTACTATCTTCA
1 ATCTACTCTACTGTAATCTCAGGGAGATAAGATTACTATCTTCA
**
65965229 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTATCTTCA
1 ATCTACTCTACTGTAATCTCAGGGAGATAAGATTACTATCTTCA
* * * * *
65965273 ATCTGCTCTATTGTAATCTCAGGGAGATAAGATCTGA-AATTTTTCG
1 ATCTACTCTACTGTAATCTCAGGGAGATAAGAT-T-ACTA-TCTTCA
* ** * * **
65965319 GTCTGTTCCACTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTG
1 ATCTACTCTACTGTAATCTCAGGGAGATAAGA--T-T-AC-T--ATCT--T-CA
* * *
65965373 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTAT-TTTA
1 ATCTACTCTACTGTAATC-TCAGGGAGATAAGAT--TACTATCTTCA
** * * * *
65965417 ATCCGCTCCACTGTAA-CTTCAGAGAGATAGGATTACTAGCTTCA
1 ATCTACTCTACTGTAATC-TCAGGGAGATAAGATTACTATCTTCA
** * * *
65965461 ATCTACTCCGCTGTAATTTCAGAGAGATAAGATCT-CTAGCTTCA
1 ATCTACTCTACTGTAATCTCAGGGAGATAAGAT-TACTATCTTCA
* * * * **
65965505 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTG
1 ATCTACTCTACTGTAATCTCAGGGAGATAAGA--T-T-AC-T--ATCT--T-CA
* * *
65965559 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTAT-TTTA
1 ATCTACTCTACTGTAATC-TCAGGGAGATAAGAT--TACTATCTTCA
** * * * *
65965603 ATCCGCTCCACTGTAA-CTTCAGAGAGATAGGATTACTAGCTTCA
1 ATCTACTCTACTGTAATC-TCAGGGAGATAAGATTACTATCTTCA
** * **
65965647 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCT-CTGGCTTCA
1 ATCTACTCTACTGTAATCTCAGGGAGATAAGAT-TACTATCTTCA
* * * * * **
65965691 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCAATCTGATGTG
1 ATCTACTCTACTGTAATCTCAGGGAGATAAGA--T-T-AC-T--ATCT--T-CA
* * *
65965745 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTAT-TTTA
1 ATCTACTCTACTGTAATC-TCAGGGAGATAAGAT--TACTATCTTCA
** * * * * *
65965789 ATCCGCTCCACTGTAA-CTTCAGAGAGATAGGACTACTAGCTTCA
1 ATCTACTCTACTGTAATC-TCAGGGAGATAAGATTACTATCTTCA
** * *
65965833 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCT-CTAGCTTCA
1 ATCTACTCTACTGTAATCTCAGGGAGATAAGAT-TACTATCTTCA
* * * * *
65965877 ATCTGCTCCAC-GTAA-CTTCAAGGAGATAAGATCTGA-AATTCTTCG
1 ATCTACTCTACTGTAATC-TCAGGGAGATAAGAT-T-ACTA-TCTTCA
* * *
65965922 GTCTACTCCACTGTAATCTCAGAGAGATAAGA
1 ATCTACTCTACTGTAATCTCAGGGAGATAAGA
65965954 CCTGTATAAT
Statistics
Matches: 571, Mismatches: 98, Indels: 110
0.73 0.13 0.14
Matches are distributed among these distances:
42 4 0.01
43 25 0.04
44 339 0.59
45 23 0.04
46 55 0.10
47 4 0.01
48 12 0.02
49 2 0.00
50 3 0.01
51 7 0.01
52 4 0.01
53 12 0.02
54 81 0.14
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (44 bp):
ATCTACTCTACTGTAATCTCAGGGAGATAAGATTACTATCTTCA
Found at i:65965576 original size:186 final size:186
Alignment explanation
Indices: 65965137--65965910 Score: 1173
Period size: 186 Copynumber: 4.2 Consensus size: 186
65965127 TTCAGTGTGT
* *
65965137 TCCACTGCAACATCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAA-
1 TCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
* * * ** * * *
65965201 TCTCAG-GCAGATAGGAT--TACTATCTTCAATCTACTCCGCTGTAA-TCTCAGGGAGATAAGAT
66 T-TCAGAG-AGATAAGATCCT-TTAT-TTTAATCCGCTCCACTGTAACT-TCAGAGAGATAGGAT
* * *** * ** ** ** *
65965262 TACTATCTTCAATCTGCTCTATTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGT
126 TACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCT-CTA-GCTTCAATCTGC
*
65965325 TCCACTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
1 TCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
65965390 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
*
65965455 GCTTCAATCTACTCCGCTGTAATTTCAGAGAGATAAGATCTCTAGCTTCAATCTGC
131 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTAGCTTCAATCTGC
65965511 TCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
1 TCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
65965576 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
*
65965641 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGC
131 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTAGCTTCAATCTGC
*
65965697 TCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
1 TCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
*
65965762 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGACTACTA
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
65965827 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTAGCTTCAATCTGC
131 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTAGCTTCAATCTGC
* *
65965883 TCCAC-GTAACTTCAAGGAGATAAGATCT
1 TCCACTGTAACCTCAGGGAGATAAGATCT
65965911 GAAATTCTTC
Statistics
Matches: 547, Mismatches: 34, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
185 20 0.04
186 378 0.69
187 1 0.00
188 141 0.26
189 6 0.01
190 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (186 bp):
TCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAAC
TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTA
GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTAGCTTCAATCTGC
Found at i:65965585 original size:142 final size:141
Alignment explanation
Indices: 65965426--65965695 Score: 373
Period size: 142 Copynumber: 1.9 Consensus size: 141
65965416 AATCCGCTCC
* * * *
65965426 ACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCAATCTACTCCGCTGTAATTTCAGAGAGATA
1 ACTGTAACTTCAGAGAGATAAGATCT-CTA-CTTCAATCCACTCCACTGTAACTTCAGAGAGATA
* *
65965490 AGATCT-CTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTG
64 AGAT-TACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCAATCTG
65965554 ATGTGATCTACTCT
128 ATGTGATCTACTCT
* * * * *
65965568 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAG
1 ACTGTAACTTCAGAGAGATAAGAT-CTCTACTTCAATCCACTCCACTGTAACTTCAGAGAGATAA
* *
65965633 GATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTG
65 GATTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCAATCTG
65965696 CTCCACTGTA
Statistics
Matches: 112, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
141 1 0.01
142 108 0.96
143 2 0.02
144 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (141 bp):
ACTGTAACTTCAGAGAGATAAGATCTCTACTTCAATCCACTCCACTGTAACTTCAGAGAGATAAG
ATTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCAATCTGATG
TGATCTACTCT
Found at i:65965630 original size:98 final size:98
Alignment explanation
Indices: 65965461--65965650 Score: 249
Period size: 98 Copynumber: 1.9 Consensus size: 98
65965451 ACTAGCTTCA
* * *
65965461 ATCTACTCCGCTGTAATTTCAGAGAGATAAGATCTCTAGCTTCAATCTGCTCCACTGTAACCTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAGCTTCAATCCGCTCCACTGTAACCTCA
* *
65965526 GGGAGATAAGATCT-CTGGCTTCAATCTGATGTG
66 GAGAGATAAGAT-TACTAGCTTCAATCTGATGTG
* * * * *
65965559 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTAATCCGCTCCACTGTAACTTC
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCAATCCGCTCCACTGTAACCTC
*
65965623 AGAGAGATAGGATTACTAGCTTCAATCT
65 AGAGAGATAAGATTACTAGCTTCAATCT
65965651 ACTCCGCTGT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
97 1 0.01
98 74 0.94
99 4 0.05
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (98 bp):
ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAGCTTCAATCCGCTCCACTGTAACCTCA
GAGAGATAAGATTACTAGCTTCAATCTGATGTG
Found at i:65965673 original size:46 final size:44
Alignment explanation
Indices: 65965559--65965953 Score: 307
Period size: 44 Copynumber: 8.7 Consensus size: 44
65965549 ATCTGATGTG
* * * * *
65965559 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATCTACTCCACTGTAACCTCAGAGAGATAAGAT-CTCTAGCTTCA
** * *
65965603 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACCTCAGAGAGATAAGATCT-CTAGCTTCA
* * *
65965647 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTAGCTTCA
* *
65965691 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTAGCTTCA
* * * *
65965735 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACCTCAGAGAGATAAGAT-CTCTAGCTTCA
** * *
65965789 ATCCGCTCCACTGTAACTTCAGAGAGATAGGA-CTACTAGCTTCA
1 ATCTACTCCACTGTAACCTCAGAGAGATAAGATCT-CTAGCTTCA
* *
65965833 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTAGCTTCA
1 ATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTAGCTTCA
* * ** * *
65965877 ATCTGCTCCAC-GTAACTTCA-AGGAGATAAGATCTGAAATTCTTCG
1 ATCTACTCCACTGTAACCTCAGA-GAGATAAGATCT-CTA-GCTTCA
* *
65965922 GTCTACTCCACTGTAATCTCAGAGAGATAAGA
1 ATCTACTCCACTGTAACCTCAGAGAGATAAGA
65965954 CCTGTATAAT
Statistics
Matches: 282, Mismatches: 47, Indels: 42
0.76 0.13 0.11
Matches are distributed among these distances:
42 4 0.01
43 23 0.08
44 181 0.64
45 17 0.06
46 17 0.06
47 3 0.01
49 1 0.00
51 2 0.01
52 1 0.00
53 1 0.00
54 29 0.10
55 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTAGCTTCA
Found at i:65965758 original size:142 final size:141
Alignment explanation
Indices: 65965612--65965881 Score: 357
Period size: 142 Copynumber: 1.9 Consensus size: 141
65965602 AATCCGCTCC
* * *
65965612 ACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCAATCTACTCCGCTGTAA-TCTCAGAGAGAT
1 ACTGTAACTTCAGAGAGATAAGATCT-CTA-CTTCAATCCACTCCACTGTAACT-TCAGAGAGAT
* * *
65965675 AAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCAATCT
63 AAGA-CTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTAGCTTCAATCT
65965739 GATGTGATCTACTCT
127 GATGTGATCTACTCT
* * * * *
65965754 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAG
1 ACTGTAACTTCAGAGAGATAAGAT-CTCTACTTCAATCCACTCCACTGTAACTTCAGAGAGATAA
* *
65965819 GACTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTAGCTTCAATCTG
65 GACTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTAGCTTCAATCTG
65965882 CTCCACGTAA
Statistics
Matches: 111, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
141 2 0.02
142 105 0.95
143 3 0.03
144 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (141 bp):
ACTGTAACTTCAGAGAGATAAGATCTCTACTTCAATCCACTCCACTGTAACTTCAGAGAGATAAG
ACTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTAGCTTCAATCTGATG
TGATCTACTCT
Found at i:65965816 original size:98 final size:98
Alignment explanation
Indices: 65965647--65965836 Score: 242
Period size: 98 Copynumber: 1.9 Consensus size: 98
65965637 ACTAGCTTCA
* * *
65965647 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
1 ATCTACTCCACTGTAATCTCAGAGAGATAAGATCTCTGACTTCAATCCGCTCCACTGTAACCTCA
*
65965712 GAGAGATAAGATCT-CTGGCTTCAATCTGATGTG
66 GAGAGATAAGA-CTACTAGCTTCAATCTGATGTG
* * * * *
65965745 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATC-CTTTATTTTAATCCGCTCCACTGTAACTT
1 ATCTACTCCACTGTAATC-TCAGAGAGATAAGATCTC-TGACTTCAATCCGCTCCACTGTAACCT
*
65965808 CAGAGAGATAGGACTACTAGCTTCAATCT
64 CAGAGAGATAAGACTACTAGCTTCAATCT
65965837 ACTCCGCTGT
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
97 4 0.05
98 75 0.95
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (98 bp):
ATCTACTCCACTGTAATCTCAGAGAGATAAGATCTCTGACTTCAATCCGCTCCACTGTAACCTCA
GAGAGATAAGACTACTAGCTTCAATCTGATGTG
Found at i:65977291 original size:19 final size:20
Alignment explanation
Indices: 65977250--65977297 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
65977240 TAATATTAGA
* *
65977250 AAAAATATATATAATAGTGT
1 AAAAATATATATAATAATAT
65977270 -AAAATATA-ACTAATAATAT
1 AAAAATATATA-TAATAATAT
65977289 AAAAATATA
1 AAAAATATA
65977298 CAATGATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 1 0.04
19 15 0.62
20 8 0.33
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (20 bp):
AAAAATATATATAATAATAT
Found at i:65977719 original size:3 final size:3
Alignment explanation
Indices: 65977688--65977755 Score: 57
Period size: 3 Copynumber: 22.3 Consensus size: 3
65977678 ATACACGTAC
* * * *
65977688 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA CTA ATA CTA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
65977735 ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
65977756 CAAGGATATT
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
2 2 0.04
3 42 0.84
4 6 0.12
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:65981112 original size:131 final size:132
Alignment explanation
Indices: 65980922--65981251 Score: 404
Period size: 131 Copynumber: 2.5 Consensus size: 132
65980912 ATAATTATTC
*
65980922 AAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGACAATTCGAGGAATCGTGCCCTACCGTG
1 AAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGACAATTCGAGGAATCGTGCCCTACCGTG
* * *
65980987 CTGGGTTGCAATTTCTCATTCGTTCAAAATAATCGAATATTCC-TTGGAATTTCAGTCATGTCTT
66 CTGGGTTGCAATTTCCCATTCGTTCAAAATAATCGAATATCCCTTTAGAATTTCAGTCATGTCTT
65981051 TA
131 TA
* * * * *
65981053 AAAAATTCTTTAAAACGATGGAAATGTTCGATGTTTGGCAATTCGGGGAATTGTGCCCTATCGTG
1 AAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGACAATTCGAGGAATCGTGCCCTACCGTG
* * * * *
65981118 CTGGGTTGCAATTTCCCGTTTGTTCAAGATAATCGAATATCCCTTTAGAATTTCACTAATGT-TT
66 CTGGGTTGCAATTTCCCATTCGTTCAAAATAATCGAATATCCCTTTAGAATTTCAGTCATGTCTT
65981182 T-
131 TA
* * * * * * * *
65981183 CAAAATTC--TAAAAC-AAAGCAATGCTCAATGCCTAGA-AATTCGAGGAATCGTGCCCTACTGT
1 AAAAATTCTTTAAAACGAAGGAAATGTTCGATG-TTTGACAATTCGAGGAATCGTGCCCTACCGT
65981244 GCTGGGTT
65 GCTGGGTT
65981252 TATATTTTTC
Statistics
Matches: 170, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
127 40 0.24
128 8 0.05
130 7 0.04
131 100 0.59
132 15 0.09
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (132 bp):
AAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGACAATTCGAGGAATCGTGCCCTACCGTG
CTGGGTTGCAATTTCCCATTCGTTCAAAATAATCGAATATCCCTTTAGAATTTCAGTCATGTCTT
TA
Found at i:65982033 original size:15 final size:16
Alignment explanation
Indices: 65982003--65982035 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
65981993 TTATTACCAC
65982003 ATAGAACATCACATCA
1 ATAGAACATCACATCA
*
65982019 ATAGAA-ATGACATCA
1 ATAGAACATCACATCA
65982034 AT
1 AT
65982036 TATAAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.52, C:0.18, G:0.09, T:0.21
Consensus pattern (16 bp):
ATAGAACATCACATCA
Found at i:65982572 original size:22 final size:23
Alignment explanation
Indices: 65982525--65982578 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
65982515 AATTTATGAA
65982525 TTTAATTATTTAATGTATATTCAC
1 TTTAATTATTT-ATGTATATTCAC
*
65982549 TTTTAATTATTT-T-TATATTTAC
1 -TTTAATTATTTATGTATATTCAC
65982571 TTTAATTA
1 TTTAATTA
65982579 AATTAAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 8 0.29
22 8 0.29
23 1 0.04
25 11 0.39
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (23 bp):
TTTAATTATTTATGTATATTCAC
Found at i:65990408 original size:19 final size:19
Alignment explanation
Indices: 65990392--65990428 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
65990382 TCCATATTTT
65990392 TTATTAGTAAATTTATTAA
1 TTATTAGTAAATTTATTAA
*
65990411 TTATTAGTAATTTTATTA
1 TTATTAGTAAATTTATTA
65990429 GAAAATATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TTATTAGTAAATTTATTAA
Found at i:65991001 original size:20 final size:21
Alignment explanation
Indices: 65990976--65991017 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
65990966 ATAATTGTAA
*
65990976 TTTTATTT-ATTAAATATTAT
1 TTTTATTTAATAAAATATTAT
65990996 TTTTATTTAATAAAATATTAT
1 TTTTATTTAATAAAATATTAT
65991017 T
1 T
65991018 AATGTATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTATTTAATAAAATATTAT
Found at i:65991017 original size:24 final size:23
Alignment explanation
Indices: 65990990--65991083 Score: 64
Period size: 24 Copynumber: 3.7 Consensus size: 23
65990980 ATTTATTAAA
65990990 TATTATTTTTATTTAATAAAATAT
1 TATTATTTTTATTTAATAAAAT-T
* *
65991014 TATTA-ATGTATTTTATATAAAATT
1 TATTATTTTTA-TTTA-ATAAAATT
*
65991038 TAAAATTCTTATTTCATTTCAACTAAAATT
1 T---ATTATT-TTT-ATTT-AA-TAAAATT
65991068 TATTATTTTTATTTAA
1 TATTATTTTTATTTAA
65991084 CTTAGAAATA
Statistics
Matches: 54, Mismatches: 6, Indels: 20
0.68 0.08 0.25
Matches are distributed among these distances:
23 3 0.06
24 13 0.24
25 11 0.20
26 3 0.06
27 8 0.15
29 6 0.11
30 10 0.19
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.55
Consensus pattern (23 bp):
TATTATTTTTATTTAATAAAATT
Found at i:65995014 original size:41 final size:39
Alignment explanation
Indices: 65994962--65995062 Score: 105
Period size: 41 Copynumber: 2.5 Consensus size: 39
65994952 TAATAAAAAT
*
65994962 AAAATACTAAAAAATTATTAAAAATTAGAAACACAACATATA
1 AAAATAGTAAAAAATTATTAAAAATT-GAAA-A-AACATATA
***
65995004 AAAAT-GTAAAAAAATATATTTAAAAATTGAAAAATTTTATA
1 AAAATAGT-AAAAAAT-TA-TTAAAAATTGAAAAAACATATA
65995045 AAAATAGTAAAAAATTAT
1 AAAATAGTAAAAAATTAT
65995063 AAATTTTATA
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
39 1 0.02
40 2 0.04
41 18 0.35
42 15 0.29
43 6 0.12
44 9 0.18
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (39 bp):
AAAATAGTAAAAAATTATTAAAAATTGAAAAAACATATA
Found at i:65995082 original size:27 final size:27
Alignment explanation
Indices: 65995025--65995120 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 27
65995015 AAATATATTT
* * *
65995025 AAAAATTGAAAAATTTTATAAAAATAGTA
1 AAAAATT-ATAAATTTTATAGAATTA-TA
65995054 AAAAATTATAAATTTTATAGAATTATA
1 AAAAATTATAAATTTTATAGAATTATA
*
65995081 AAAAAATATAAATTTGTA-AGAAAATTATA
1 AAAAATTATAAATTT-TATAG--AATTATA
*
65995110 CAAAATT-TAAA
1 AAAAATTATAAA
65995121 GAAATATAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
27 18 0.31
28 21 0.36
29 19 0.33
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.33
Consensus pattern (27 bp):
AAAAATTATAAATTTTATAGAATTATA
Found at i:65995109 original size:29 final size:27
Alignment explanation
Indices: 65995035--65995095 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
65995025 AAAAATTGAA
* * *
65995035 AAATTTTATAAAAATAGTAAAAAATTAT
1 AAATTTTATAGAATTA-TAAAAAAATAT
65995063 AAATTTTATAGAATTATAAAAAAATAT
1 AAATTTTATAGAATTATAAAAAAATAT
65995090 AAATTT
1 AAATTT
65995096 GTAAGAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 16 0.53
28 14 0.47
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (27 bp):
AAATTTTATAGAATTATAAAAAAATAT
Found at i:65995153 original size:38 final size:39
Alignment explanation
Indices: 65995074--65995156 Score: 100
Period size: 38 Copynumber: 2.2 Consensus size: 39
65995064 AATTTTATAG
* *
65995074 AATTATAAAAAAATATAAATTTGTAAGAAAATTATACAA
1 AATTATAAAAAAATATAAATTTATAAGAAAATTACACAA
*
65995113 AATT-TAAAGAAATATAAATTTCATAA-AGAAATTACA-AA
1 AATTATAAAAAAATATAAATTT-ATAAGA-AAATTACACAA
65995151 AATTAT
1 AATTAT
65995157 CATACTAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
38 23 0.61
39 15 0.39
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (39 bp):
AATTATAAAAAAATATAAATTTATAAGAAAATTACACAA
Found at i:66001142 original size:10 final size:10
Alignment explanation
Indices: 66001127--66001155 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
66001117 ATGTAATTTA
66001127 GGGACTTTTT
1 GGGACTTTTT
66001137 GGGACTTTTT
1 GGGACTTTTT
66001147 GGGACTTTT
1 GGGACTTTT
66001156 GCTTAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.10, G:0.31, T:0.48
Consensus pattern (10 bp):
GGGACTTTTT
Found at i:66001685 original size:28 final size:28
Alignment explanation
Indices: 66001653--66001708 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
66001643 GGAAAAGAAC
66001653 GTCAAACTAAAAAAAACTCCTTTTTCAA
1 GTCAAACTAAAAAAAACTCCTTTTTCAA
66001681 GTCAAACTAAAAAAAACTCCTTTTTCAA
1 GTCAAACTAAAAAAAACTCCTTTTTCAA
66001709 ATTTTAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.21, G:0.04, T:0.29
Consensus pattern (28 bp):
GTCAAACTAAAAAAAACTCCTTTTTCAA
Found at i:66002005 original size:32 final size:31
Alignment explanation
Indices: 66001942--66002007 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 31
66001932 GGGTATTACA
* **
66001942 ATTCAAAAGTTTTCATTTAAGTCACTGAACT
1 ATTCAAAAGTTTTCATTTAAATCACCAAACT
*
66001973 ATTCAAAAGTTTTTTATTTAAATCACCAAACT
1 ATTCAAAAG-TTTTCATTTAAATCACCAAACT
66002005 ATT
1 ATT
66002008 AAGTTTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 9 0.30
32 21 0.70
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (31 bp):
ATTCAAAAGTTTTCATTTAAATCACCAAACT
Found at i:66003923 original size:7 final size:7
Alignment explanation
Indices: 66003905--66003948 Score: 63
Period size: 7 Copynumber: 6.1 Consensus size: 7
66003895 AAGTAAAAGA
66003905 TATTTAAT
1 TATTT-AT
66003913 TATTTAT
1 TATTTAT
66003920 TATTTAT
1 TATTTAT
66003927 TATTTAT
1 TATTTAT
66003934 TA-TTAT
1 TATTTAT
66003940 TATTATAT
1 TATT-TAT
66003948 T
1 T
66003949 TTATCAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.18
7 19 0.56
8 9 0.26
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
TATTTAT
Found at i:66004162 original size:19 final size:18
Alignment explanation
Indices: 66004126--66004173 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
66004116 AGAAAGTTAT
*
66004126 AGAGAAAGAAACGTGAAA
1 AGAGAAAGAAACGAGAAA
66004144 GAGAGAAAGAAA-GAAGAAA
1 -AGAGAAAGAAACG-AGAAA
*
66004163 AGAAAAAGAAA
1 AGAGAAAGAAA
66004174 AAGGGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.69, C:0.02, G:0.27, T:0.02
Consensus pattern (18 bp):
AGAGAAAGAAACGAGAAA
Found at i:66008086 original size:14 final size:15
Alignment explanation
Indices: 66008060--66008089 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
66008050 TAATTATCAC
66008060 TTAATTAATATTAAT
1 TTAATTAATATTAAT
66008075 TTAATT-ATATTAAT
1 TTAATTAATATTAAT
66008089 T
1 T
66008090 ATTATTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTAATTAATATTAAT
Found at i:66012356 original size:28 final size:29
Alignment explanation
Indices: 66012316--66012382 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 29
66012306 AAAATTTCAA
66012316 AAAAAATTA-TAAACA-AATATTAAAAA-T
1 AAAAAATTATTAAA-ATAATATTAAAAAGT
* *
66012343 AAAAAATTATTAAAATTATTTTAAAAAGT
1 AAAAAATTATTAAAATAATATTAAAAAGT
*
66012372 AAAAAAATATT
1 AAAAAATTATT
66012383 TTTAATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
27 10 0.29
28 13 0.38
29 11 0.32
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (29 bp):
AAAAAATTATTAAAATAATATTAAAAAGT
Found at i:66012358 original size:16 final size:17
Alignment explanation
Indices: 66012324--66012357 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
66012314 AAAAAAAATT
66012324 ATAAACAAATATTAAAA
1 ATAAACAAATATTAAAA
66012341 ATAAA-AAATTATTAAAA
1 ATAAACAAA-TATTAAAA
66012358 TTATTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
ATAAACAAATATTAAAA
Found at i:66012368 original size:27 final size:29
Alignment explanation
Indices: 66012316--66012382 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 29
66012306 AAAATTTCAA
*
66012316 AAAAAATTATAAACAAATATT-AAAAA-T
1 AAAAAATTATTAACAAATATTAAAAAAGT
* *
66012343 AAAAAATTATTAA-AATTATTTTAAAAAGT
1 AAAAAATTATTAACAAATA-TTAAAAAAGT
*
66012372 AAAAAAATATT
1 AAAAAATTATT
66012383 TTTAATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.12
27 14 0.41
28 5 0.15
29 11 0.32
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (29 bp):
AAAAAATTATTAACAAATATTAAAAAAGT
Found at i:66012932 original size:28 final size:28
Alignment explanation
Indices: 66012887--66012943 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
66012877 AAATTATAAA
* *
66012887 AAAATTTATAATTATTTTATTTTTTAAG
1 AAAATTTATAATTATTTTAATTTTGAAG
*
66012915 AAAATTT-TAATTTTTTTTAATTTTGAAG
1 AAAATTTATAA-TTATTTTAATTTTGAAG
66012943 A
1 A
66012944 GCTTTTTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (28 bp):
AAAATTTATAATTATTTTAATTTTGAAG
Found at i:66017917 original size:18 final size:18
Alignment explanation
Indices: 66017894--66017936 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
66017884 GTTTAAGGTG
66017894 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
66017912 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
66017930 TAATTAA
1 TAATTAA
66017937 AAACCTATCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:66028454 original size:17 final size:19
Alignment explanation
Indices: 66028434--66028468 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
66028424 CATCATCTAG
66028434 TACCATT-AAA-AATCTTT
1 TACCATTCAAACAATCTTT
66028451 TACCATTCAAACAATCTT
1 TACCATTCAAACAATCTT
66028469 GTAAAACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.37
Consensus pattern (19 bp):
TACCATTCAAACAATCTTT
Found at i:66030568 original size:61 final size:61
Alignment explanation
Indices: 66030510--66030630 Score: 163
Period size: 61 Copynumber: 2.0 Consensus size: 61
66030500 ATATAAAATG
** * * * *
66030510 TTTAACAAATTTAGTGCTCAATGTTTATAAAATTTATTATTTTAGTTCTAA-TTCTAAAAAA
1 TTTAACAAATTTAGCCCTCAATATTTATAAAATTTATCAATTTAGTCCTAACTT-TAAAAAA
*
66030571 TTTAATAAATTTAGCCCTCAATATTTATAAAATTTATCAATTTAGTCCTAACTTTAAAAA
1 TTTAACAAATTTAGCCCTCAATATTTATAAAATTTATCAATTTAGTCCTAACTTTAAAAA
66030631 TTGAGAAAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
61 50 0.96
62 2 0.04
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (61 bp):
TTTAACAAATTTAGCCCTCAATATTTATAAAATTTATCAATTTAGTCCTAACTTTAAAAAA
Found at i:66031686 original size:17 final size:17
Alignment explanation
Indices: 66031664--66031696 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
66031654 GAAAAGGTCA
66031664 ATCTATCCTATGATTTG
1 ATCTATCCTATGATTTG
*
66031681 ATCTATCTTATGATTT
1 ATCTATCCTATGATTT
66031697 CCTAGAGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.52
Consensus pattern (17 bp):
ATCTATCCTATGATTTG
Found at i:66041845 original size:30 final size:31
Alignment explanation
Indices: 66041785--66041850 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
66041775 ACAATTTGGC
*
66041785 CATTAAACTATTCAAAAGTTTTCATTTAAGT
1 CATTGAACTATTCAAAAGTTTTCATTTAAGT
* * *
66041816 CATTGAACTGTTCAAGAGTTTT-TTTTAAGT
1 CATTGAACTATTCAAAAGTTTTCATTTAAGT
66041846 CATTG
1 CATTG
66041851 GGTTGTTAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 12 0.39
31 19 0.61
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (31 bp):
CATTGAACTATTCAAAAGTTTTCATTTAAGT
Found at i:66043207 original size:16 final size:16
Alignment explanation
Indices: 66043183--66043219 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
66043173 TTCGCTGAAT
*
66043183 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
66043199 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
66043215 TGGAA
1 TGGAA
66043220 AAGTTGTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.38, T:0.27
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:66043485 original size:18 final size:17
Alignment explanation
Indices: 66043464--66043498 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
66043454 TTATTATTAA
*
66043464 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
66043482 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
66043499 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:66043635 original size:16 final size:16
Alignment explanation
Indices: 66043598--66043639 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
66043588 TTAATCATAT
*
66043598 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
66043614 TT-AAATATATTATAA
1 TTAAAATATATTATAA
66043629 TTAAAATATAT
1 TTAAAATATAT
66043640 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:66043641 original size:154 final size:156
Alignment explanation
Indices: 66043351--66043664 Score: 560
Period size: 154 Copynumber: 2.0 Consensus size: 156
66043341 TAGAATACCC
*
66043351 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGACTATTGTTATTGTTATTTAAATTTTAATAAGATTA-TA
*
66043416 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
65 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
*
66043481 TATATAATTTAATAAAATTCTTAATAA
130 TATATAATTTAATAAAATTCTTAAAAA
* *
66043508 TTAGCATAAATTTGTTTTGGTAAATTACTATTGTTATTGTTATTTAAATTTTAATAAGATTA-A-
1 TTAGCAGAAATTTGTTTTGGTAAATGACTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
66043571 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
66 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
66043636 ATATAATTTAATAAAATTCTTAAAAA
131 ATATAATTTAATAAAATTCTTAAAAA
66043662 TTA
1 TTA
66043665 ATATTCTTAT
Statistics
Matches: 152, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
154 92 0.61
155 1 0.01
157 59 0.39
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (156 bp):
TTAGCAGAAATTTGTTTTGGTAAATGACTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
ATATAATTTAATAAAATTCTTAAAAA
Found at i:66043646 original size:14 final size:15
Alignment explanation
Indices: 66043607--66043648 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
66043597 TTTAAACATA
*
66043607 ATTATTATTAAATAT
1 ATTATAATTAAATAT
66043622 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
66043636 A-TATAATTTAATA
1 ATTATAATTAAATA
66043649 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:66043735 original size:120 final size:121
Alignment explanation
Indices: 66043596--66043892 Score: 451
Period size: 120 Copynumber: 2.5 Consensus size: 121
66043586 ATTTAATCAT
*
66043596 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAAA
1 ATTTCAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAAA
* * * *
66043661 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAA
66 AGTAAAATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AA
*
66043718 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTCAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAAA
*
66043781 AGTAAAATTCTTCTATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
66 AGTAAAATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
* * *
66043837 ATTTCAA-GTAATTAATATTAAATATGATT-TAATT-AAATATATGATTTAATAAAATT
1 ATTTCAACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAAAATT
66043893 TAAAATTATT
Statistics
Matches: 163, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
119 24 0.15
120 131 0.80
121 7 0.04
122 1 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.41
Consensus pattern (121 bp):
ATTTCAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAAA
AGTAAAATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
Found at i:66043766 original size:14 final size:15
Alignment explanation
Indices: 66043717--66043768 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
66043707 GTAAAATATA
66043717 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
66043732 TATTAAATATATTAT
1 AATTAAATATATTAT
66043747 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
66043760 AATTTAATA
1 AATTAAATA
66043769 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:66043873 original size:15 final size:15
Alignment explanation
Indices: 66043853--66043891 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
66043843 AGTAATTAAT
66043853 ATTAAATATGATTTA
1 ATTAAATATGATTTA
66043868 ATTAAATATATGATTTA
1 ATT-AA-ATATGATTTA
*
66043885 ATAAAAT
1 ATTAAAT
66043892 TTAAAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 5 0.24
16 4 0.19
17 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (15 bp):
ATTAAATATGATTTA
Done.