Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 223 of 230
Found at i:66043878 original size:17 final size:17
Alignment explanation
Indices: 66043858--66043891 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
66043848 TTAATATTAA
*
66043858 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
66043875 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
66043892 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:66044004 original size:92 final size:91
Alignment explanation
Indices: 66043924--66044117 Score: 284
Period size: 92 Copynumber: 2.1 Consensus size: 91
66043914 GATTATAGTT
* * *
66043924 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
*
66043987 ATAAAATTCTTGATAATAAAAATTTCTTA
64 ATAAAATTCTTAATAAT-AAAATTTCTTA
* *
66044016 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
66044081 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAAT-TTCTTA
66044108 TATGAATTTA
1 TATGAATTTA
66044118 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 5 0.05
92 84 0.90
93 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.44
Consensus pattern (91 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATTTCTTA
Found at i:66045532 original size:11 final size:11
Alignment explanation
Indices: 66045518--66045544 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
66045508 AAAAATCAAT
66045518 ACAAAAGTTTC
1 ACAAAAGTTTC
66045529 ACAAAAGTTTC
1 ACAAAAGTTTC
66045540 ACAAA
1 ACAAA
66045545 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:66051325 original size:31 final size:31
Alignment explanation
Indices: 66051290--66051373 Score: 82
Period size: 31 Copynumber: 2.7 Consensus size: 31
66051280 ATTTAACTAA
*
66051290 AAAAATTAATAATTT-AGTTATTAAACTATTC
1 AAAAATTAAT-ATTTAAGTTACTAAACTATTC
** *
66051321 AAAAATTTCTATTTAAGTTACTGAACTATTC
1 AAAAATTAATATTTAAGTTACTAAACTATTC
* *
66051352 AAAAAATT-TTATTTAAATTACT
1 -AAAAATTAATATTTAAGTTACT
66051374 TGGATGTTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
30 4 0.09
31 34 0.76
32 7 0.16
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (31 bp):
AAAAATTAATATTTAAGTTACTAAACTATTC
Found at i:66052321 original size:25 final size:26
Alignment explanation
Indices: 66052282--66052334 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
66052272 AAATTCGTTT
*
66052282 TTATTATTTGAAATTTAATTT-TTTA
1 TTATTATTAGAAATTTAATTTATTTA
* *
66052307 TTATTATTAGGAATTTGATTTATTTA
1 TTATTATTAGAAATTTAATTTATTTA
66052333 TT
1 TT
66052335 TTCTAGAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (26 bp):
TTATTATTAGAAATTTAATTTATTTA
Found at i:66057603 original size:31 final size:30
Alignment explanation
Indices: 66057550--66057632 Score: 82
Period size: 31 Copynumber: 2.7 Consensus size: 30
66057540 TTTTAGATTT
* *
66057550 TTTTGAAAT-TTTTATCATTTTTAAAAATATA
1 TTTTGAAATATTTTGT-AATTTTAAAAAT-TA
66057581 TATATT-AAATATTTTG-AATTTTAAAAATTA
1 T-T-TTGAAATATTTTGTAATTTTAAAAATTA
*
66057611 TTTTGAATTATTTTGTAATTTT
1 TTTTGAAATATTTTGTAATTTT
66057633 TGTTGAGAGA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
28 2 0.05
29 10 0.23
30 9 0.20
31 12 0.27
32 5 0.11
33 6 0.14
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.57
Consensus pattern (30 bp):
TTTTGAAATATTTTGTAATTTTAAAAATTA
Found at i:66057972 original size:21 final size:21
Alignment explanation
Indices: 66057948--66057989 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
66057938 TTTTATAAGT
66057948 GTGATTGTAAAATGTATTATG
1 GTGATTGTAAAATGTATTATG
66057969 GTGATTGTAAAATGTATTATG
1 GTGATTGTAAAATGTATTATG
66057990 TTGTGGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (21 bp):
GTGATTGTAAAATGTATTATG
Found at i:66058437 original size:18 final size:20
Alignment explanation
Indices: 66058397--66058438 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
66058387 TCTCTTAACA
*
66058397 AAAATTTCAAAATAATTTTT
1 AAAATTTCAAAATAATTTAT
66058417 AAAA-TTCAAAAT-ATTTAT
1 AAAATTTCAAAATAATTTAT
66058435 AAAA
1 AAAA
66058439 ATTTAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 8 0.38
20 4 0.19
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAATTTCAAAATAATTTAT
Found at i:66058439 original size:19 final size:19
Alignment explanation
Indices: 66058396--66058441 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
66058386 TTCTCTTAAC
66058396 AAAAATTTCAAAATAATTTT
1 AAAAA-TTCAAAATAATTTT
*
66058416 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
66058435 AAAAATT
1 AAAAATT
66058442 TAATATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 4 0.17
19 15 0.65
20 4 0.17
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:66058479 original size:20 final size:20
Alignment explanation
Indices: 66058453--66058492 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
66058443 AATATTTTAT
66058453 ATTTTTTT-AAAAATTCTAA
1 ATTTTTTTAAAAAATTCTAA
66058472 ATTTTTTTAAAAAATTCTAA
1 ATTTTTTTAAAAAATTCTAA
66058492 A
1 A
66058493 AATATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTTTTTTAAAAAATTCTAA
Found at i:66066358 original size:103 final size:103
Alignment explanation
Indices: 66066179--66066385 Score: 333
Period size: 103 Copynumber: 2.0 Consensus size: 103
66066169 AAATTTTACA
* * *
66066179 TAGAAAATTTTTATCGAGAAAAATCATGGTTAAAGGAAGAGAAATTCATTAATGTTGAAAAACAA
1 TAGAAAATTTTTATCGAGAAAAATCATGGTCAAAGGAAGAGAAATTCACTAATATTGAAAAACAA
* * *
66066244 CAATGCAAGAGGTTTTCAATTACATATATTTTTAAGGG
66 CAACGCAAGAGGTTTTCAATTACACACATTTTTAAGGG
*
66066282 TAGAAAATTTTTATCGAGAAAAATCATGGTCAAAGGAAGAGAAATTTACTAATATTGAAAAACAA
1 TAGAAAATTTTTATCGAGAAAAATCATGGTCAAAGGAAGAGAAATTCACTAATATTGAAAAACAA
* *
66066347 CAACGCAAGAGGTTTTCGATTACACACGTTTTTAAGGG
66 CAACGCAAGAGGTTTTCAATTACACACATTTTTAAGGG
66066385 T
1 T
66066386 TAAACGACCA
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
103 95 1.00
ACGTcount: A:0.43, C:0.10, G:0.18, T:0.29
Consensus pattern (103 bp):
TAGAAAATTTTTATCGAGAAAAATCATGGTCAAAGGAAGAGAAATTCACTAATATTGAAAAACAA
CAACGCAAGAGGTTTTCAATTACACACATTTTTAAGGG
Found at i:66067848 original size:20 final size:21
Alignment explanation
Indices: 66067823--66067878 Score: 71
Period size: 19 Copynumber: 2.7 Consensus size: 21
66067813 TAAAATTTCA
*
66067823 AAAAAATTATAAGAATTATTTT
1 AAAAAATTATAAAAATTA-TTT
*
66067845 AAAAAA-T-GAAAAATTATTT
1 AAAAAATTATAAAAATTATTT
66067864 AAAAAATTATAAAAA
1 AAAAAATTATAAAAA
66067879 AATAATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 9 0.31
20 8 0.28
21 6 0.21
22 6 0.21
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (21 bp):
AAAAAATTATAAAAATTATTT
Found at i:66084931 original size:16 final size:15
Alignment explanation
Indices: 66084893--66084931 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
66084883 AAATTAATCC
*
66084893 AAATATATATTCTTA
1 AAATATATATTATTA
66084908 AAATTATATATTATATA
1 AAA-TATATATTAT-TA
66084925 AAATATA
1 AAATATA
66084932 AATCTTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 13 0.62
17 5 0.24
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATATATATTATTA
Found at i:66086015 original size:16 final size:18
Alignment explanation
Indices: 66085994--66086033 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
66085984 TTAAAATTAT
66085994 AAAATATTCA-A-AAATA
1 AAAATATTCATAGAAATA
*
66086010 AAAATATTCATAGAAATT
1 AAAATATTCATAGAAATA
66086028 AAAATA
1 AAAATA
66086034 AAGTACATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.48
17 1 0.05
18 10 0.48
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.28
Consensus pattern (18 bp):
AAAATATTCATAGAAATA
Found at i:66087232 original size:66 final size:66
Alignment explanation
Indices: 66087126--66087255 Score: 233
Period size: 66 Copynumber: 2.0 Consensus size: 66
66087116 TATGAGCTGG
**
66087126 TACCAAAATCGAGTCCTAAACAAGCAGATCTAATTTTAACAATTAGAACAATAACAATGAAAATT
1 TACCAAAATCGAGTCCTAAACAAGCAGATCTAATTTTAACAACCAGAACAATAACAATGAAAATT
66087191 A
66 A
*
66087192 TACCAAAATCGAGTCCTAAACAAGCAGATCTAATTTTAACAACCGGAACAATAACAATGAAAAT
1 TACCAAAATCGAGTCCTAAACAAGCAGATCTAATTTTAACAACCAGAACAATAACAATGAAAAT
66087256 GATGCATAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.49, C:0.18, G:0.10, T:0.22
Consensus pattern (66 bp):
TACCAAAATCGAGTCCTAAACAAGCAGATCTAATTTTAACAACCAGAACAATAACAATGAAAATT
A
Found at i:66088934 original size:17 final size:17
Alignment explanation
Indices: 66088914--66088947 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
66088904 AGGTTTAAGT
66088914 TTAAAATTTTTAATTAA
1 TTAAAATTTTTAATTAA
*
66088931 TTAAATTTTTTAATTAA
1 TTAAAATTTTTAATTAA
66088948 AAATCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTAAAATTTTTAATTAA
Found at i:66102736 original size:2 final size:2
Alignment explanation
Indices: 66102729--66102762 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
66102719 AAATTGTTAG
66102729 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
66102763 TGGGAAGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:66106297 original size:53 final size:53
Alignment explanation
Indices: 66106212--66106329 Score: 164
Period size: 53 Copynumber: 2.2 Consensus size: 53
66106202 ATTTTTAACA
* * *
66106212 TAAATTTAGTAATGAGTGGATTAAGATTTACAAACCTATAAAAATGAAGTGAT
1 TAAATTTACTAATGAGTGGATTAAGATATACAAACCTATAAAAATGAAGTGAC
* * * * *
66106265 TAAATTCACTAATGATTGGATTAAGATATACAAAGCTATAAAAATGCATTGAC
1 TAAATTTACTAATGAGTGGATTAAGATATACAAACCTATAAAAATGAAGTGAC
66106318 TAAATTTACTAA
1 TAAATTTACTAA
66106330 AGAAAAAGTA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.46, C:0.08, G:0.14, T:0.32
Consensus pattern (53 bp):
TAAATTTACTAATGAGTGGATTAAGATATACAAACCTATAAAAATGAAGTGAC
Found at i:66108531 original size:26 final size:26
Alignment explanation
Indices: 66108500--66108553 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
66108490 GCGTGCGTAT
66108500 ATATATGTGTATATATAAGCTATAGAAC
1 ATAT-TGTGTATATAT-AGCTATAGAAC
*
66108528 ATATTGTGTGTATATAGCTATAGAAC
1 ATATTGTGTATATATAGCTATAGAAC
66108554 TTCCTTTCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 11 0.44
27 10 0.40
28 4 0.16
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (26 bp):
ATATTGTGTATATATAGCTATAGAAC
Found at i:66109132 original size:24 final size:24
Alignment explanation
Indices: 66109105--66109152 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
66109095 CAAGACATGT
66109105 CACTCAAATACTCGAAACAAGGTC
1 CACTCAAATACTCGAAACAAGGTC
66109129 CACTCAAATACTCGAAACAAGGTC
1 CACTCAAATACTCGAAACAAGGTC
66109153 AAATTCTGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.29, G:0.12, T:0.17
Consensus pattern (24 bp):
CACTCAAATACTCGAAACAAGGTC
Found at i:66113481 original size:25 final size:27
Alignment explanation
Indices: 66113451--66113506 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
66113441 AATTCTCCCA
*
66113451 TATTT-ATTTTTAAAAATATA-ATTTT
1 TATTTAATATTTAAAAATATATATTTT
*
66113476 TATTTAATATTTAAAATTATATATTTT
1 TATTTAATATTTAAAAATATATATTTT
66113503 TATT
1 TATT
66113507 AAAATTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 5 0.19
26 13 0.48
27 9 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (27 bp):
TATTTAATATTTAAAAATATATATTTT
Found at i:66113508 original size:26 final size:26
Alignment explanation
Indices: 66113459--66113513 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
66113449 CATATTTATT
*
66113459 TTTAAAAATATAATTTTTATTTAATA
1 TTTAAAAATATAATTTTTATTTAAAA
*
66113485 TTTAAAATTATATATTTTTA-TTAAAA
1 TTTAAAAATATA-ATTTTTATTTAAAA
66113511 TTT
1 TTT
66113514 TAAACATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
TTTAAAAATATAATTTTTATTTAAAA
Found at i:66113515 original size:27 final size:25
Alignment explanation
Indices: 66113458--66113517 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 25
66113448 CCATATTTAT
*
66113458 TTTTAAAAATATAATTTTTATTTAA
1 TTTTAAAAATATAATTTTTATTAAA
*
66113483 TATTTAAAATTATATATTTTTATTAAAA
1 T-TTTAAAAATATA-ATTTTTATT-AAA
66113511 TTTTAAA
1 TTTTAAA
66113518 CATAAACAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 1 0.03
26 11 0.37
27 15 0.50
28 3 0.10
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (25 bp):
TTTTAAAAATATAATTTTTATTAAA
Found at i:66116386 original size:31 final size:31
Alignment explanation
Indices: 66116351--66116416 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
66116341 AATAGTCTAG
66116351 TGACTTAAATAAAAACTTTTGAATAATTCAA
1 TGACTTAAATAAAAACTTTTGAATAATTCAA
* * * *
66116382 TGACTTAAATGAAAATTTTTGAATAGTTCAT
1 TGACTTAAATAAAAACTTTTGAATAATTCAA
66116413 TGAC
1 TGAC
66116417 CAATTTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTTGAATAATTCAA
Found at i:66119551 original size:25 final size:23
Alignment explanation
Indices: 66119496--66119552 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 23
66119486 AGAGAAGCAG
* *
66119496 ATAAGAATGAAAAAAAAGAAAAA
1 ATAAGAATTAAAAAAAAAAAAAA
66119519 A-AAG--TTAAAAGAAAATAAAAAA
1 ATAAGAATTAAAA-AAAA-AAAAAA
66119541 ATAAGAATTAAA
1 ATAAGAATTAAA
66119553 TTGCTCAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
20 5 0.19
21 4 0.15
22 9 0.33
23 4 0.15
25 5 0.19
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (23 bp):
ATAAGAATTAAAAAAAAAAAAAA
Found at i:66122494 original size:13 final size:13
Alignment explanation
Indices: 66122476--66122500 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66122466 AAATACACCA
66122476 AAACATATCAAAG
1 AAACATATCAAAG
66122489 AAACATATCAAA
1 AAACATATCAAA
66122501 ACAACTACAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAACATATCAAAG
Found at i:66130076 original size:18 final size:21
Alignment explanation
Indices: 66130053--66130101 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 21
66130043 CATGTTAGCG
66130053 AATAAAATATT-TA-ATAT-A
1 AATAAAATATTATATATATAA
66130071 AAT-AAATAATTATATATATAA
1 AATAAAAT-ATTATATATATAA
66130092 AATAAAATAT
1 AATAAAATAT
66130102 AAATAGAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
17 4 0.15
18 6 0.23
19 2 0.08
20 4 0.15
21 6 0.23
22 4 0.15
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
AATAAAATATTATATATATAA
Found at i:66130102 original size:18 final size:18
Alignment explanation
Indices: 66130053--66130111 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 18
66130043 CATGTTAGCG
*
66130053 AATAAAATATTTAATATA
1 AATAAAATATATAATATA
*
66130071 AAT-AAATA-ATTATATA
1 AATAAAATATATAATATA
*
66130087 TATAAAATA-A-AATATA
1 AATAAAATATATAATATA
*
66130103 AATAGAATA
1 AATAAAATA
66130112 AGTTTACATT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
16 20 0.59
17 11 0.32
18 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
AATAAAATATATAATATA
Found at i:66132289 original size:13 final size:14
Alignment explanation
Indices: 66132266--66132295 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
66132256 AATTGATTAA
66132266 AACTAAAATTAACT
1 AACTAAAATTAACT
66132280 AACT-AAATTAACT
1 AACTAAAATTAACT
66132293 AAC
1 AAC
66132296 GAGTGTGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (14 bp):
AACTAAAATTAACT
Found at i:66138999 original size:34 final size:34
Alignment explanation
Indices: 66138956--66139023 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
66138946 ATCACAATTC
66138956 CATACAATCTCTTCTCGTCATCAAATAATTGAAA
1 CATACAATCTCTTCTCGTCATCAAATAATTGAAA
66138990 CATACAATCTCTTCTCGTCATCAAATAATTGAAA
1 CATACAATCTCTTCTCGTCATCAAATAATTGAAA
66139024 AATAAATACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (34 bp):
CATACAATCTCTTCTCGTCATCAAATAATTGAAA
Found at i:66140032 original size:15 final size:15
Alignment explanation
Indices: 66140012--66140041 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66140002 TGAAAGAGGG
66140012 AAGAAGAAGACTAAA
1 AAGAAGAAGACTAAA
*
66140027 AAGAAGAAGATTAAA
1 AAGAAGAAGACTAAA
66140042 TCATTTCATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.20, T:0.10
Consensus pattern (15 bp):
AAGAAGAAGACTAAA
Found at i:66140057 original size:4 final size:4
Alignment explanation
Indices: 66140048--66140087 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
66140038 TAAATCATTT
66140048 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
66140088 TGTATAGATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:66157392 original size:20 final size:21
Alignment explanation
Indices: 66157344--66157395 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
66157334 ATATATTTGC
66157344 ATTAATATTAATATATTTTATA
1 ATTAA-ATTAATATATTTTATA
66157366 ATTAAATTAAT-T-TTTTATTA
1 ATTAAATTAATATATTTTA-TA
*
66157386 TTTAAATTAA
1 ATTAAATTAA
66157396 ATTATGGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 5 0.18
20 12 0.43
21 6 0.21
22 5 0.18
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTAAATTAATATATTTTATA
Found at i:66161763 original size:13 final size:14
Alignment explanation
Indices: 66161734--66161768 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
66161724 TTTGAGGCTA
*
66161734 TAAATTATAATTTT
1 TAAATTATAATTAT
66161748 TAAATT-TAATTAT
1 TAAATTATAATTAT
66161761 TAAATTAT
1 TAAATTAT
66161769 TAATATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TAAATTATAATTAT
Found at i:66161786 original size:28 final size:27
Alignment explanation
Indices: 66161734--66161787 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
66161724 TTTGAGGCTA
**
66161734 TAAATTATAATTTTTAAATTTAATTAT
1 TAAATTATAATTTTTAAATGAAATTAT
66161761 TAAATTATTAATATTTTAAA-GAAATTA
1 TAAATTA-TAAT-TTTTAAATGAAATTA
66161788 AAAATATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 7 0.30
28 9 0.39
29 7 0.30
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (27 bp):
TAAATTATAATTTTTAAATGAAATTAT
Found at i:66166790 original size:20 final size:20
Alignment explanation
Indices: 66166752--66166790 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
66166742 TTTTAATTCA
*
66166752 CTAAACCCCAAACTTGAACC
1 CTAAACCCCAAACTCGAACC
66166772 CTAAA-CCCAAACCTCGAAC
1 CTAAACCCCAAA-CTCGAAC
66166791 TTCAAACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.41, C:0.41, G:0.05, T:0.13
Consensus pattern (20 bp):
CTAAACCCCAAACTCGAACC
Found at i:66169716 original size:24 final size:25
Alignment explanation
Indices: 66169673--66169721 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
66169663 TAAATATACA
66169673 TATATAGAAAAAAAACTGTAAGTAT
1 TATATAGAAAAAAAACTGTAAGTAT
66169698 TATATA-AAATAAAAA-TGTAAGTAT
1 TATATAGAAA-AAAAACTGTAAGTAT
66169722 GTGCATATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.57, C:0.02, G:0.10, T:0.31
Consensus pattern (25 bp):
TATATAGAAAAAAAACTGTAAGTAT
Found at i:66184886 original size:30 final size:30
Alignment explanation
Indices: 66184840--66184963 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
66184830 TTTTATTATG
*
66184840 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
66184871 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
66184901 TCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
66184931 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
66184961 CCA
1 CCA
66184964 TAAATATGGA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 79 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.23, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:66184895 original size:15 final size:15
Alignment explanation
Indices: 66184850--66184957 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
66184840 CCAATATCTC
66184850 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
66184865 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
66184880 GATACCCATATCTTT
1 GATACCCATATCTTT
*** *
66184895 GACTTTTCA-ATATTT
1 GA-TACCCATATCTTT
66184910 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
66184925 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
66184940 GATACCCATATCTTT
1 GATACCCATATCTTT
66184955 GAT
1 GAT
66184958 TTTCCATAAA
Statistics
Matches: 65, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
14 11 0.17
15 43 0.66
16 11 0.17
ACGTcount: A:0.26, C:0.21, G:0.07, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:66186999 original size:31 final size:27
Alignment explanation
Indices: 66186935--66187000 Score: 69
Period size: 31 Copynumber: 2.3 Consensus size: 27
66186925 TATTTTTCTC
66186935 AATTTTTAAAGTTAGGACTAAATTGAT
1 AATTTTTAAAGTTAGGACTAAATTGAT
* *
66186962 AGATTTTGTAAATGTTGAGGACTAAGTTTATT
1 A-ATTTT-TAAA-GTT-AGGACTAAATTGA-T
66186994 AATTTTT
1 AATTTTT
66187001 TTTAGAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
27 1 0.03
28 5 0.16
29 4 0.12
30 4 0.12
31 16 0.50
32 2 0.06
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.45
Consensus pattern (27 bp):
AATTTTTAAAGTTAGGACTAAATTGAT
Found at i:66187030 original size:62 final size:62
Alignment explanation
Indices: 66186937--66187057 Score: 138
Period size: 62 Copynumber: 2.0 Consensus size: 62
66186927 TTTTTCTCAA
* * * * * ** *
66186937 TTTTTAAAGTTAGGACTAAATTGATAGATTTTGTAAATGTTGAG-GACTAAGTTTATTAATTT
1 TTTTTAAAGTTAGAACTAAAATAATAAATTTTATAAACATTGAGCG-CTAAATTTATTAATTT
66186999 TTTTTAGAA-TTAGAACTAAAATAATAAATTTTATAAACATTGAGCGCTAAATTTATTAA
1 TTTTTA-AAGTTAGAACTAAAATAATAAATTTTATAAACATTGAGCGCTAAATTTATTAA
66187058 ACATTTTATA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
62 46 0.94
63 3 0.06
ACGTcount: A:0.40, C:0.05, G:0.13, T:0.42
Consensus pattern (62 bp):
TTTTTAAAGTTAGAACTAAAATAATAAATTTTATAAACATTGAGCGCTAAATTTATTAATTT
Found at i:66192354 original size:11 final size:11
Alignment explanation
Indices: 66192336--66192371 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
66192326 GAAGGGAAGG
66192336 AAAGAAAGAAA
1 AAAGAAAGAAA
*
66192347 AGAGAAAGAAA
1 AAAGAAAGAAA
66192358 AAAGAAAGGAAA
1 AAAGAAA-GAAA
66192370 AA
1 AA
66192372 TAGGGTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 16 0.73
12 6 0.27
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (11 bp):
AAAGAAAGAAA
Found at i:66193053 original size:17 final size:16
Alignment explanation
Indices: 66193022--66193065 Score: 63
Period size: 17 Copynumber: 2.7 Consensus size: 16
66193012 TTAAAAATGT
66193022 ATTG-AATTGATATTG
1 ATTGAAATTGATATTG
66193037 ATTGAAATTGTATATTG
1 ATTGAAATTG-ATATTG
66193054 ATTGGAAATTGA
1 ATT-GAAATTGA
66193066 ATTATGAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 4 0.15
16 5 0.19
17 10 0.38
18 7 0.27
ACGTcount: A:0.36, C:0.00, G:0.20, T:0.43
Consensus pattern (16 bp):
ATTGAAATTGATATTG
Found at i:66193079 original size:18 final size:17
Alignment explanation
Indices: 66193022--66193080 Score: 61
Period size: 18 Copynumber: 3.5 Consensus size: 17
66193012 TTAAAAATGT
66193022 ATTG-AATTG-ATATTG
1 ATTGAAATTGAATATTG
*
66193037 ATTGAAATTGTATATTG
1 ATTGAAATTGAATATTG
66193054 ATTGGAAATTGAAT-TATG
1 ATT-GAAATTGAATAT-TG
66193072 AATTGAAAT
1 -ATTGAAAT
66193081 ACCCTATTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
15 4 0.11
16 5 0.13
17 10 0.26
18 16 0.42
19 3 0.08
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (17 bp):
ATTGAAATTGAATATTG
Found at i:66195296 original size:16 final size:16
Alignment explanation
Indices: 66195255--66195301 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
66195245 GGATCTAAGT
66195255 TTTCTTGTTTATTTCAG
1 TTTCTT-TTTATTTCAG
66195272 TTT-TGTTTTATTTCA-
1 TTTCT-TTTTATTTCAG
66195287 TCTTCTTTTTATTTC
1 T-TTCTTTTTATTTC
66195302 TATTTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.04
16 21 0.78
17 5 0.19
ACGTcount: A:0.11, C:0.13, G:0.06, T:0.70
Consensus pattern (16 bp):
TTTCTTTTTATTTCAG
Found at i:66195311 original size:16 final size:15
Alignment explanation
Indices: 66195262--66195311 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
66195252 AGTTTTCTTG
*
66195262 TTTATTTCAGTTTTGT
1 TTTATTTCA-TTTTTT
*
66195278 TTTATTTCATCTTCTT
1 TTTATTTCAT-TTTTT
66195294 TTTATTTCTATTTTTT
1 TTTATTTC-ATTTTTT
66195310 TT
1 TT
66195312 CTTACTTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 1 0.03
16 26 0.90
17 2 0.07
ACGTcount: A:0.12, C:0.10, G:0.04, T:0.74
Consensus pattern (15 bp):
TTTATTTCATTTTTT
Found at i:66196186 original size:26 final size:26
Alignment explanation
Indices: 66196157--66196438 Score: 104
Period size: 26 Copynumber: 11.0 Consensus size: 26
66196147 TTAGATACCT
66196157 TTTATTTTAAACTATTTTATATATTA
1 TTTATTTTAAACTATTTTATATATTA
* *
66196183 TTTA-TTTAAAAT-TTTTATATGTTA
1 TTTATTTTAAACTATTTTATATATTA
** * * * *
66196207 TTTA-GATATATTATTCTATATGTTA
1 TTTATTTTAAACTATTTTATATATTA
* *** *
66196232 ATCGCTTTAAGTTCCT-TTTTAT-TATT-
1 TTTATTTTAA---ACTATTTTATATATTA
* **
66196258 TTTATTTTGAACT-TTCCATATATTA
1 TTTATTTTAAACTATTTTATATATTA
* *
66196283 TTTATTTTTAAA-TATTTTTATATACTC
1 TTTA-TTTTAAACTA-TTTTATATATTA
* *
66196310 TTTATTTTAAACTACTTTATGTATTA
1 TTTATTTTAAACTATTTTATATATTA
*
66196336 TTATCTATTTAAA--ATTTTCATATATAGTA
1 TT-TAT-TTTAAACTATTTT-ATATAT--TA
* * * * *
66196365 TTTAGTTTAAATTGTTTTATATGTTC
1 TTTATTTTAAACTATTTTATATATTA
* * *
66196391 CTCATTTTAAA--ACTTT-TATATTA
1 TTTATTTTAAACTATTTTATATATTA
* *
66196414 TTTATTTTAAGCTCTTTTATATATT
1 TTTATTTTAAACTATTTTATATATT
66196439 TTCAAAGGGT
Statistics
Matches: 181, Mismatches: 54, Indels: 42
0.65 0.19 0.15
Matches are distributed among these distances:
23 19 0.10
24 26 0.14
25 27 0.15
26 53 0.29
27 30 0.17
28 17 0.09
29 9 0.05
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (26 bp):
TTTATTTTAAACTATTTTATATATTA
Found at i:66196606 original size:26 final size:26
Alignment explanation
Indices: 66196571--66196631 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
66196561 TCTTTTTTGC
* *
66196571 ATATTGTTTATTCTGAATCATTTCAT
1 ATATTATTTATTCTAAATCATTTCAT
* ** *
66196597 ATATTATTTATTTTAAATTTTTTTAT
1 ATATTATTTATTCTAAATCATTTCAT
66196623 ATATTATTT
1 ATATTATTT
66196632 TTTTTAAACT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (26 bp):
ATATTATTTATTCTAAATCATTTCAT
Found at i:66196644 original size:23 final size:24
Alignment explanation
Indices: 66196571--66196649 Score: 61
Period size: 26 Copynumber: 3.2 Consensus size: 24
66196561 TCTTTTTTGC
* * *
66196571 ATATTGTTTATTCTGAATCATTTCAT
1 ATATTATTTATTTTAAATC-TTT-AT
*
66196597 ATATTATTTATTTTAAATTTTTTTAT
1 ATATTATTTATTTTAAA--TCTTTAT
* *
66196623 ATATTATTTTTTTTAAA-CTTTAC
1 ATATTATTTATTTTAAATCTTTAT
66196646 ATAT
1 ATAT
66196650 CTTTTTACTT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
23 8 0.18
26 32 0.73
27 3 0.07
28 1 0.02
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (24 bp):
ATATTATTTATTTTAAATCTTTAT
Found at i:66196808 original size:13 final size:13
Alignment explanation
Indices: 66196790--66196814 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66196780 TTTTTTTCAT
66196790 ATTATTTCATATA
1 ATTATTTCATATA
66196803 ATTATTTCATAT
1 ATTATTTCATAT
66196815 TGTCCATTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTATTTCATATA
Found at i:66201988 original size:18 final size:17
Alignment explanation
Indices: 66201957--66201995 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
66201947 TTTATAACTT
66201957 TATTTATTTAATTTTAA
1 TATTTATTTAATTTTAA
* *
66201974 GTATTTTTTTTATTTTAA
1 -TATTTATTTAATTTTAA
66201992 TATT
1 TATT
66201996 AATACTTGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (17 bp):
TATTTATTTAATTTTAA
Found at i:66208873 original size:24 final size:24
Alignment explanation
Indices: 66208846--66208892 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
66208836 AAATATTATA
*
66208846 TAAAAAAGTAAAA-AAAACTAAAAT
1 TAAAAAACTAAAATAAAA-TAAAAT
*
66208870 TAAAAATCTAAAATAAAATAAAA
1 TAAAAAACTAAAATAAAATAAAA
66208893 AAAGCACTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.19
Consensus pattern (24 bp):
TAAAAAACTAAAATAAAATAAAAT
Found at i:66211665 original size:17 final size:16
Alignment explanation
Indices: 66211633--66211689 Score: 105
Period size: 16 Copynumber: 3.5 Consensus size: 16
66211623 TAATAGATAC
66211633 GAGGTGTATTGGATTA
1 GAGGTGTATTGGATTA
66211649 GAGGTGTATTGGGATTA
1 GAGGTGTATT-GGATTA
66211666 GAGGTGTATTGGATTA
1 GAGGTGTATTGGATTA
66211682 GAGGTGTA
1 GAGGTGTA
66211690 ATAGCAAATC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 24 0.60
17 16 0.40
ACGTcount: A:0.25, C:0.00, G:0.40, T:0.35
Consensus pattern (16 bp):
GAGGTGTATTGGATTA
Found at i:66211736 original size:45 final size:44
Alignment explanation
Indices: 66211680--66211767 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
66211670 TGTATTGGAT
* *
66211680 TAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAATGTAATAGAA
1 TAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAATGGAATAGAA
* ***
66211725 TAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAATGGAATAGA
1 TAGAGGCGTAATAGAAATCAACTGTTTGGTTGAATGGAATAGA
66211768 GGTGTAATAG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 24 0.65
45 13 0.35
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (44 bp):
TAGAGGCGTAATAGAAATCAACTGTTTGGTTGAATGGAATAGAA
Found at i:66211945 original size:16 final size:16
Alignment explanation
Indices: 66211905--66211959 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
66211895 TTAATCATAT
*
66211905 TTAAACATA-ATTTTTA
1 TTAAA-ATATATTTTAA
66211921 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
66211936 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
66211954 -TAAAAT
1 TTAAAAT
66211960 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:66211952 original size:18 final size:17
Alignment explanation
Indices: 66211925--66211959 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
66211915 TTTTTATTAA
*
66211925 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
66211943 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
66211960 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:66212068 original size:119 final size:116
Alignment explanation
Indices: 66211873--66212441 Score: 557
Period size: 120 Copynumber: 4.8 Consensus size: 116
66211863 TAATAAGATT
* * * *
66211873 ATTATTATCAATAATAAATAATTT--AATCAT-ATTTAAACATAATTTTTATTAAATATATTTTA
1 ATTATTATTAACAATAAATAATTTAAAAT-ATAATTTAAA-ATAATTATTATTAAATATAATTTA
* * *
66211935 ATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAATT-TGT-TTTGGTAA
64 ATAAAAATATATAATTTAATAAAATTCTTAATAATTA--A-ATATTCT-TATAT-G-AA
* *
66211992 ATTATTATTAACAATAAATAATTTAAAAGATAATTTAACATAA-TATTATTAAATATAATTTAAT
1 ATTATTATTAACAATAAATAATTTAAAATATAATTTAAAATAATTATTATTAAATATAATTTAAT
66212056 AAAAATATATAATTTAATAAAATTCTTAAT-ATTAAATATTCTTATATGAA
66 AAAAATATATAATTTAATAAAATTCTTAATAATTAAATATTCTTATATGAA
* * * *
66212106 TTTAATAAAATTATA-ATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAA
1 ATT-AT--TATTA-ACA-ATA-AATAATTTAAAATATAATTTAAAATAATTATTATTAAATATAA
* * *
66212170 TTTAATAGAAATATATAATTTAATAAAATTCTTAATATTTAAATATTCTTAAATGAA
60 TTTAATAAAAATATATAATTTAATAAAATTCTTAATAATTAAATATTCTTATATGAA
* * * *
66212227 TTTACTA-AAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAA
1 ATTATTATTAA-C--AATAAATAAT--T-TAAAATATAATTTAAAATAATTATTATTAAATATAA
* *
66212291 TTTAACAAAAATATATAATTTAATAAAATTCTTAAT-ATTAAATATTCTTAAATGAA
60 TTTAATAAAAATATATAATTTAATAAAATTCTTAATAATTAAATATTCTTATATGAA
* * * *
66212347 TTTACTA-AAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAAAATAT
1 ATTATTATTAA-C--AATAAATAAT--T-TAAAATATAATTTAAAATAATTATTATT--AAATAT
* *
66212411 AATTTAGTAAAAATATATAATTTAATCAAAT
58 AATTTAATAAAAATATATAATTTAATAAAAT
66212442 CATTATATTC
Statistics
Matches: 398, Mismatches: 30, Indels: 41
0.85 0.06 0.09
Matches are distributed among these distances:
114 4 0.01
115 8 0.02
116 5 0.01
117 6 0.02
118 13 0.03
119 96 0.24
120 133 0.33
121 99 0.25
122 34 0.09
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (116 bp):
ATTATTATTAACAATAAATAATTTAAAATATAATTTAAAATAATTATTATTAAATATAATTTAAT
AAAAATATATAATTTAATAAAATTCTTAATAATTAAATATTCTTATATGAA
Found at i:66212119 original size:19 final size:18
Alignment explanation
Indices: 66212044--66212199 Score: 77
Period size: 18 Copynumber: 8.0 Consensus size: 18
66212034 ATATTATTAA
*
66212044 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAATT
66212062 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAATT
* ***
66212080 CT-TAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAATT
66212099 ATATGAATTTAATAAAATT
1 ATAT-AATTTAATAAAATT
* *
66212118 ATA-ATATATAATACTATAA-A
1 ATATA-ATTTAATA--A-AATT
66212138 ATATAATTTAAAATAATTATTATT
1 ATATAATTT--AATAA--A--ATT
66212162 AAATATAATTTAATAGAAA-T
1 --ATATAATTTAATA-AAATT
66212182 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAATT
66212200 CTTAATATTT
Statistics
Matches: 106, Mismatches: 13, Indels: 38
0.68 0.08 0.24
Matches are distributed among these distances:
17 8 0.08
18 41 0.39
19 16 0.15
20 12 0.11
21 9 0.08
22 4 0.04
23 2 0.02
24 4 0.04
25 1 0.01
26 9 0.08
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (18 bp):
ATATAATTTAATAAAATT
Found at i:66212152 original size:22 final size:23
Alignment explanation
Indices: 66212110--66212152 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
66212100 TATGAATTTA
*
66212110 ATAAAATTATAATATATAATACT
1 ATAAAATTATAATATAAAATACT
*
66212133 ATAAAA-TATAATTTAAAATA
1 ATAAAATTATAATATAAAATA
66212153 ATTATTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
ATAAAATTATAATATAAAATACT
Found at i:66212263 original size:121 final size:120
Alignment explanation
Indices: 66212015--66212441 Score: 739
Period size: 120 Copynumber: 3.5 Consensus size: 120
66212005 ATAAATAATT
* *
66212015 TAAAAGATAATTTAACATAA-TATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
1 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
* * *
66212079 TCTTAATATTAAATATTCTTATATGAATTTAATAAAATTATAATATATAATACTA
66 TCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
*
66212134 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAGAAATATATAATTTAATAAAAT
1 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
66212199 TCTTAATATTTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
66 TCTTAATA-TTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
*
66212255 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAAT
1 TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
66212320 TCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
66 TCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
* *
66212375 TAAAATATAATTTAAAATAATTATTATTAAAAATATAATTTAGTAAAAATATATAATTTAATCAA
1 TAAAATATAATTTAAAATAATTATTATT--AAATATAATTTAATAAAAATATATAATTTAATAAA
66212440 AT
64 AT
66212442 CATTATATTC
Statistics
Matches: 293, Mismatches: 11, Indels: 5
0.95 0.04 0.02
Matches are distributed among these distances:
119 18 0.06
120 126 0.43
121 115 0.39
122 34 0.12
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.41
Consensus pattern (120 bp):
TAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
TCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTA
Found at i:66212593 original size:25 final size:25
Alignment explanation
Indices: 66212565--66212643 Score: 112
Period size: 25 Copynumber: 3.3 Consensus size: 25
66212555 ATTGCAAAAA
66212565 GAAATTACTATAAGTTAGAGCATAT
1 GAAATTACTATAAGTTAGAGCATAT
*
66212590 GAAATTACT-T---TTTGAAGCATAT
1 GAAATTACTATAAGTTAG-AGCATAT
66212612 GAAATTACTATAAGTTAGAGCATAT
1 GAAATTACTATAAGTTAGAGCATAT
66212637 GAAATTA
1 GAAATTA
66212644 AGCAAAGATC
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
21 3 0.06
22 16 0.34
23 1 0.02
24 1 0.02
25 23 0.49
26 3 0.06
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (25 bp):
GAAATTACTATAAGTTAGAGCATAT
Found at i:66215912 original size:26 final size:26
Alignment explanation
Indices: 66215883--66215934 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
66215873 TCAAAATTTG
66215883 AGCATGATTCGTTTTAAATAGACATA
1 AGCATGATTCGTTTTAAATAGACATA
66215909 AGCATGATTCGTTTTAAATAGACATA
1 AGCATGATTCGTTTTAAATAGACATA
66215935 CATTTTGCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (26 bp):
AGCATGATTCGTTTTAAATAGACATA
Found at i:66223248 original size:28 final size:28
Alignment explanation
Indices: 66223199--66223262 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
66223189 TGGATTCTCT
* * *
66223199 AAGGCTTGTGTGCGTCATTTCATTACAG
1 AAGGCTTGTGTGCGCCAATTCATAACAG
*
66223227 AAGGCTTGTGTGAC-CCAATTCATAACGG
1 AAGGCTTGTGTG-CGCCAATTCATAACAG
66223255 AAGGCTTG
1 AAGGCTTG
66223263 CTGAGTCAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 30 0.97
29 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (28 bp):
AAGGCTTGTGTGCGCCAATTCATAACAG
Found at i:66236532 original size:21 final size:21
Alignment explanation
Indices: 66236507--66236560 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
66236497 TGCAAGGCAT
66236507 ACACGCCCGTGTGGCCAAGGG
1 ACACGCCCGTGTGGCCAAGGG
* * *
66236528 ACACGCCCGTGAGGTCATGGG
1 ACACGCCCGTGTGGCCAAGGG
*
66236549 ACACACCCGTGT
1 ACACGCCCGTGT
66236561 CTCAGGCCGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.20, C:0.33, G:0.33, T:0.13
Consensus pattern (21 bp):
ACACGCCCGTGTGGCCAAGGG
Found at i:66237851 original size:41 final size:38
Alignment explanation
Indices: 66237718--66237843 Score: 103
Period size: 40 Copynumber: 3.2 Consensus size: 38
66237708 ACCAGTTTGG
* * *
66237718 CACCCAGTGCCTCATCGGATAATTCGAAGTAATAAGTTGA
1 CACCCAGTACCTCATC-GATTATCCGAAGTAAT-AGTTGA
* * * * *
66237758 CACCCAATATCTCATCGGCTTAACCGAAGTAA-A-TTGG
1 CACCCAGTACCTCATC-GATTATCCGAAGTAATAGTTGA
*
66237795 TACCCAGTACCTCATCGAATTTATCCGAAGTAATAGTTTGA
1 CACCCAGTACCTCATCG-A-TTATCCGAAGTAATAG-TTGA
66237836 CACCCAGT
1 CACCCAGT
66237844 GTCTCATCAA
Statistics
Matches: 66, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
36 1 0.02
37 16 0.24
38 13 0.20
39 1 0.02
40 25 0.38
41 10 0.15
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (38 bp):
CACCCAGTACCTCATCGATTATCCGAAGTAATAGTTGA
Found at i:66238656 original size:12 final size:12
Alignment explanation
Indices: 66238639--66238666 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
66238629 ATAAAATTTA
66238639 ATAATATAATAT
1 ATAATATAATAT
66238651 ATAATATAATAT
1 ATAATATAATAT
66238663 ATAA
1 ATAA
66238667 AACATAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
ATAATATAATAT
Found at i:66241375 original size:91 final size:91
Alignment explanation
Indices: 66241267--66241433 Score: 228
Period size: 91 Copynumber: 1.8 Consensus size: 91
66241257 AATAGACAAT
* * * * *
66241267 AAAAATAGAAATTGAAAATAGCTTAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGA-CCTAAGGCTCAACTCACCTCTCACAATACGA
66241331 GTCGATCTTTTTGAAAGGCAAAATTTG
65 GTCGATCTTTTTGAAAGGCAAAATTTG
* **
66241358 AAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGTCTCTCACAATACGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTAAGGCTCAACTCACCTCTCACAATACGAG
* *
66241423 TTGATTTTTTT
66 TCGATCTTTTT
66241434 TTTGACAACA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
90 2 0.03
91 63 0.97
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (91 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTAAGGCTCAACTCACCTCTCACAATACGAG
TCGATCTTTTTGAAAGGCAAAATTTG
Found at i:66241598 original size:89 final size:88
Alignment explanation
Indices: 66241442--66241617 Score: 273
Period size: 89 Copynumber: 2.0 Consensus size: 88
66241432 TTTTTGACAA
*
66241442 CAGAAATTGAAATTACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTAACTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATT
* *
66241507 TTTTGAAAAATATAAATTTAAAAG
65 TTTTGAAAAATAAAAATTGAAAAG
* *
66241531 CAGAAATTGAAATTAACTCAACATG-CCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATT
1 CAGAAATTGAAATTAACTCAACATGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
66241595 TTTTGAAAGATAAAAATTGAAAA
65 TTTTGAAAAATAAAAATTGAAAA
66241618 TACCTCAGCA
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
88 25 0.31
89 55 0.69
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (88 bp):
CAGAAATTGAAATTAACTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTGAAAAATAAAAATTGAAAAG
Found at i:66241655 original size:74 final size:74
Alignment explanation
Indices: 66241534--66241767 Score: 299
Period size: 74 Copynumber: 3.1 Consensus size: 74
66241524 TTAAAAGCAG
* * * * * *
66241534 AAATTGAAATTAACTCAACATGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
66241598 TGAAAGATAA
66 TGAAA-ATAA
**
66241608 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * *
66241673 TGACAACAG
66 TGAAAATAA
* * *
66241682 AAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGAATTTTT
1 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTT
*
66241747 TTGAAAAATAT
65 TTG-AAAATAA
66241758 AAATTGAAAA
1 AAATTGAAAA
66241768 GCAGAAATTG
Statistics
Matches: 137, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
74 106 0.77
75 18 0.13
76 13 0.09
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (74 bp):
AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAATAA
Found at i:66241817 original size:238 final size:238
Alignment explanation
Indices: 66241354--66243189 Score: 2154
Period size: 238 Copynumber: 7.7 Consensus size: 238
66241344 AAAGGCAAAA
* * * * * * * *
66241354 TTTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGTCTCTCACAATA
1 TTTGAAAGACAAAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCGCAATA
* * * *
66241419 CGAGTTGATTTTTTTTTTGACAACAGAAATTGAAATTACCTCAACATGTCCTGAGGCTCAACTCA
64 TGAGTTGA--TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
* * *
66241484 CCTCTCGCAATATGAGTTGAATTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACT
127 CCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCT
* * *
66241549 CAACATGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTT
192 CAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
66241596 TTTGAAAGATAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAGACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
66241661 AGTTGA-TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTC
66 AGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTC
*
66241725 TCACAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAA
131 TCGCAATATGAGTTG-ATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAA
66241790 CGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
195 CGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
66241834 TTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAGACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
*
66241899 AGTTGA-TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATCTC
66 AGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTC
* *
66241963 TCGCAATATGAGTTGAATTTTTTTAAAAAATATAAATTGAAAAGCAGAAATTAAAATTACCTCAA
131 TCGCAATATGAGTTG-ATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAA
66242028 CGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
195 CGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * * **
66242071 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAGACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
* *
66242136 AGTTGATTTTTGAAAAACATAAATTG--AACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCT
66 AGTTGATTTTT--------T---TTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCT
** *
66242199 CAACTCATTTCTCGCAATATGAGTTGATTTTTTT------T-TAAA--G---A-CAAAAATTGAA
120 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAA
* * * * **
66242251 AATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
185 ATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
66242305 TTTGAAAGACAAAAATTGAAAATACCTCAGCTTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAGACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
*
66242370 AGTTGATTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
66 AGTTGA-TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCT
66242435 CTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCA
130 CTCGCAATATGAGTTG-ATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCA
*
66242500 ACGTGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TT
194 ACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * * *
66242544 TTTGACAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATAT
1 TTTGA-AAGACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT
* * * * **
66242608 GAGTTGATTTTTGAAAATAGATTGAAACACAAAAATTGACAA-TACCTCAGTGTGCCCCGAGGCT
65 GAGTTGATTTTT-----T---TTGACA-ACAGAAATTGA-AATTACCTCAGCGTGTCTTGAGGCT
*
66242672 CAACTCACCTCTCGCAATATGAGTTGA---TTTTGAAAAACATAAATTG--AA-CAGAAATTGAA
120 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAA
* * **
66242731 ACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTT
185 ATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTT
*
66242789 TTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAGACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
* * * * **
66242854 AGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
66 AGTTGATTTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCT
* *
66242918 CTCGCAATATGAGTTGA-TTTTTT------T-T---TTGACAA-CAGAAATTGAAATTACCTCAG
130 CTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAA
*
66242971 CGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTT
195 CGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TTT
* * * * *
66243017 TTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTA
1 TTTG--------AAA--G---A-CAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA
* * * * **
66243082 CCTT-TCGCAGTATGAGTTGATTTTTTTTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTT
52 -TTTCTCGCAATATGAGTTGA-TTTTTTTTGACAA-CAGAAATTGAAATTACCTCAGCGTGTCTT
66243146 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
114 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
66243190 CAGAAATAAA
Statistics
Matches: 1402, Mismatches: 114, Indels: 149
0.84 0.07 0.09
Matches are distributed among these distances:
224 3 0.00
226 58 0.04
227 9 0.01
228 11 0.01
230 55 0.04
231 3 0.00
233 55 0.04
234 72 0.05
235 7 0.00
236 63 0.04
237 136 0.10
238 330 0.24
239 71 0.05
240 144 0.10
241 3 0.00
242 81 0.06
243 22 0.02
244 73 0.05
245 71 0.05
246 15 0.01
247 115 0.08
248 2 0.00
249 3 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (238 bp):
TTTGAAAGACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
AGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAAC
GTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
Found at i:66241854 original size:74 final size:75
Alignment explanation
Indices: 66241772--66243038 Score: 773
Period size: 74 Copynumber: 16.1 Consensus size: 75
66241762 TGAAAAGCAG
* * * *
66241772 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTT
66241836 TGAAAGACAA
66 TGAAAGACAA
* * *
66241846 AAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTT
* *
66241911 TGACA-ACAG
66 TGAAAGACAA
*
66241920 AAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAATTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTG-ATTTTT
* * * *
66241985 TTAAAAAATAT
65 TTGAAAGACAA
* ** * *** ** * * * * *
66241996 AAATTGAAAAGCAGAAATTAAAAT-TACCTCAACGTGCCTTGAGGCTCAACTCAC-C--TCTCGC
1 AAATTG-AAA--ATACCTCAGCGTGT--CTTGA-G-G-C-TCA-ACTCATCTCTCGCAATAT-G-
* * *
66242057 AATATGAGTTGATTTTTGAAAAACAG
54 AGT-TGA-TT--TTTTTGAAAGACAA
* *
66242083 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTT-
* *
66242148 AAAAACAT-AAATTGAACAG
65 ------TTGAAA--G-ACAA
* * *
66242167 AAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-TTTTT
*
66242232 TTTAAAGACAA
65 TTGAAAGACAA
* *
66242243 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTT
66242307 TGAAAGACAA
66 TGAAAGACAA
* *
66242317 AAATTGAAAATACCTCAGCTTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTTT
* *
66242382 TTTGACA-ACAG
64 TTTGAAAGACAA
* * *
66242393 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTG-ATTTTT
* * *
66242458 TTGAAAAATAT
65 TTGAAAGACAA
* ** * *** ** ** * * * * ** * *
66242469 AAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCAC-CTCTCA-CAA
1 AAATTG-AAA--A-TACCTCAGCGTGTCTTGA-G-G-C-TCA-ACTCATCTCTCGCAAT-ATGAG
* ** ***
66242532 TATGAGTTGATT-TTTGACAAACA
56 T-TGATTTTTTTGAAAGAC--A-A
* * * *
66242555 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTT
1 -AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTT
*** *
66242620 GAAAATAGATTGAA
65 TTGAA-AGA--CAA
* ** * ** ** *
66242634 ACA-CAAAAATTGACAATACCTCAGTGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAATTGAAAA-T-AC-CT-CAGC-GTGT--CTTGAGGCTCAACTCATCTCTCGCAATATGAGTTG
** *
66242698 ATTTTGAAAAACAT-AAATTGAACAG
59 ATTTT------TTTGAAA--G-ACAA
* * *
66242723 AAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA---TTT
66242788 TTTTGAAAGACAA
63 TTTTGAAAGACAA
* *
66242801 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTT
66242866 TGAAAGACAA
66 TGAAAGACAA
* *
66242876 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA---TTT
* *
66242941 TTTTGACA-ACAG
63 TTTTGAAAGACAA
* * * *
66242953 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTG-ATTTTT
* * *
66243018 TTGAAAAATAT
65 TTGAAAGACAA
66243029 AAATTGAAAA
1 AAATTGAAAA
66243039 GCAGAAATTG
Statistics
Matches: 923, Mismatches: 183, Indels: 172
0.72 0.14 0.13
Matches are distributed among these distances:
74 181 0.20
75 117 0.13
76 142 0.15
77 77 0.08
78 99 0.11
79 21 0.02
80 17 0.02
81 14 0.02
82 11 0.01
83 44 0.05
84 116 0.13
85 34 0.04
86 12 0.01
87 24 0.03
88 3 0.00
89 6 0.01
90 4 0.00
91 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (75 bp):
AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTT
TGAAAGACAA
Found at i:66242293 original size:76 final size:76
Alignment explanation
Indices: 66242003--66243038 Score: 754
Period size: 76 Copynumber: 13.2 Consensus size: 76
66241993 TATAAATTGA
* * **
66242003 AAAG-CAGAAATT-AAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAGACAGAAATTGAAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
*
66242066 TGA---TTTTTG
65 TGATTTTTTTTT
* * **
66242075 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
***
66242140 GATTTTTGAAAAACAT
66 GATTTTT-----TTTT
* *
66242156 AAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 AAA--G-ACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
66242221 GTTGATTTTTTTTT
63 GTTGATTTTTTTTT
* *
66242235 AAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
*
66242300 GA--TTTTTTG
66 GATTTTTTTTT
* *
66242309 AAAGACAAAAATTGAAAATACCTCAGCTTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
66242374 GATTTTTTTTT
66 GATTTTTTTTT
* * * **
66242385 GACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 -AAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
* *
66242449 TGAATTTTTTTG
65 TGATTTTTTTTT
* * * * ** *** ** * * * *
66242461 AAAAATATAAATTG-AAA-AGCAGAAATTGAAATT-A-CCTCAACGTGCCTTGAGGCTCAACTCA
1 AAAGACAGAAATTGAAAATACCTCAGCGTG-TCTTGAGGCTCAAC-T-CATT-----TC-TCGCA
* * * * * **
66242522 CCTCTCACAATATGAGTTGATTTT
57 -ATAT--GAGT-TGATTTTTTTTT
* * *
66242546 TGACAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGA
1 --A-AAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
***
66242610 GTTGA-TTTTTGAA
63 GTTGATTTTTTTTT
** *** * ** ** **
66242623 AATAGATTGAAACACAAAAATTGACAATACCTCAGTGTGCCCCGAGGCTCAACTCACCTCTCGCA
1 AA-AGACAGAAA-TTGAAAA-T-AC-CT-CAGC-GTGT--CTTGAGGCTCAACTCATTTCTCGCA
****
66242688 ATATGAGTTGATTTTGAAAAACAT
57 ATATGAGTTGATTTT----TTTTT
* *
66242712 AAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 AAA--G-ACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
66242777 GTTGATTTTTTTTTT
63 GTTGA-TTTTTTTTT
* *
66242792 GAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 -AAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
*
66242857 TGA-TTTTTTTG
65 TGATTTTTTTTT
* *
66242868 AAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
66242933 GATTTTTTTTTT
66 GA-TTTTTTTTT
* * * ** *
66242945 GACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAAT
1 -AAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
* *
66243009 TGAATTTTTTTG
65 TGATTTTTTTTT
* * *
66243021 AAAAATATAAATTGAAAA
1 AAAGACAGAAATTGAAAA
66243039 GCAGAAATTG
Statistics
Matches: 763, Mismatches: 140, Indels: 118
0.75 0.14 0.12
Matches are distributed among these distances:
72 3 0.00
73 60 0.08
74 84 0.11
75 77 0.10
76 169 0.22
77 72 0.09
78 65 0.09
79 9 0.01
80 4 0.01
81 13 0.02
82 8 0.01
83 34 0.04
84 101 0.13
85 15 0.02
86 2 0.00
87 10 0.01
88 11 0.01
89 11 0.01
90 10 0.01
91 5 0.01
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (76 bp):
AAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
GATTTTTTTTT
Found at i:66242305 original size:397 final size:381
Alignment explanation
Indices: 66241360--66243185 Score: 1597
Period size: 397 Copynumber: 4.6 Consensus size: 381
66241350 AAAATTTGAA
* ** * ** * *
66241360 AAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGTCTCTCACAATACGAGTT
1 AAACAGAAATTGAAATTACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * *
66241425 GATTTTTTTTTTGACA-ACAGAAATTGAAATTACCTCAACATGTCC-TGAGGCTCAACTCACCTC
64 GA--TTTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATG-CCTTGAGGCTCAACTCACTTC
* * *
66241488 TCGCAATATGAGTTGAATTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACTCAAC
126 TCGCAATATGAGTTG-A---TTT------T-T---TTGAAAA-CAGAAATTGAAAATACCTCAAC
* * * * * * *
66241553 ATGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGA----TTTTTTG-AAAGATAAAAATT
176 GTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAG-CAGAAATT
* ** *
66241613 GAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTG-AC
240 GAAAATACCTCAGCATGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA
* *
66241677 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGAA
304 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTG-A
*
66241742 TTTTTTTGAAAAATATAAATTG
368 --TTTTTG----A-CT-AATTG
66241764 AAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 -AAA-CAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
66241828 TGA--TTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTC
63 TGATTTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGCCTTGAGGCTCAACTCACTTCTC
* * *
66241891 GCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAAC
128 GCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAAC
66241956 TCATCTCTCGCAATATGAGTTGAATTTTTTTAAAAAATATAAATTGAAAAGCAGAAATT-AAAAT
193 TCATCTCTCGCAATATGAGTTG-A-TTTTTT------T-T---TTGAAAAGCAGAAATTGAAAA-
* *
66242020 TACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGA
245 TACCTCAGCATGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGA
*
66242084 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
310 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTG-
66242149 AAAACATAAATTG
374 ---AC-T-AATTG
* * **
66242162 -AACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * *
66242226 TTTTTTTTTAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCA
66 TTTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGCCTTGAGGCTCAACTCACTTCTCGCA
* * *
66242291 ATATGAGTTGA-TTTTTTGAAAGACAAAAATTGAAAATACCTCAGCTTGTCTTGAGGCTCAACTC
131 ATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTC
* * * *
66242355 ATTTCTCGCAATATGAGTTGA-TTTTTTTTTGACAA-CAGAAATTGAAATTACCTCAGCGTGTCC
195 ATCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAGCAGAAATTGAAAATACCTCAGCATG-CC
66242418 -TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCA
259 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTTG----------A---AAAA-CA
* *
66242482 GAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
308 GAAATTGAAAATACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
66242546 TGAC------
372 TGACTAATTG
* ** *
66242550 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * ** **
66242615 TTTTTGAAAATAGATTGAAACACAAAAATTGACAATACCTCAGTGTGCCCCGAGGCTCAACTCAC
66 TTTTT-----T---TTGAAAGACAAAAATTGAAAATACCTCAGCATGCCTTGAGGCTCAACTCAC
* ** * *
66242680 CTCTCGCAATATGAGTTGATTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTG
123 TTCTCGCAATATGAGTTGATTTT------TTTGAA---AACAGAAATTGAAAATACCTCAACGTG
* *
66242745 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTG-AAAGACAAAAATTGAA
179 TCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAG-CAGAAATTGAA
* ** *
66242809 AATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAGAC
243 AATACCTCAGCATGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAAC
* * * ** *
66242874 AAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
307 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
**
66242939 T---TTTTTG
372 TGACTAATTG
* *
66242946 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTG
1 A-AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * * *
66243011 AATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTC
65 -ATTTTTTT------T-GAAA--G---A-CAAAAATTGAAAATACCTCAGCATGCCTTGAGGCTC
* * *
66243076 AACTTACCTT-TCGCAGTATGAGTTGATTTTTTTTTGAAAAGCAGAAATTGAAAATACCTCAATG
116 AACTCA-CTTCTCGCAATATGAGTTGA--TTTTTTTGAAAA-CAGAAATTGAAAATACCTCAACG
*
66243140 TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
177 TGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTT
66243186 GAAACAGAAA
Statistics
Matches: 1210, Mismatches: 114, Indels: 202
0.79 0.07 0.13
Matches are distributed among these distances:
383 52 0.04
384 12 0.01
386 60 0.05
387 7 0.01
388 1 0.00
389 65 0.05
390 2 0.00
391 1 0.00
392 2 0.00
393 58 0.05
394 10 0.01
395 56 0.05
396 20 0.02
397 321 0.27
398 28 0.02
399 10 0.01
400 80 0.07
401 118 0.10
402 54 0.04
403 55 0.05
404 34 0.03
405 7 0.01
406 83 0.07
407 21 0.02
408 53 0.04
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (381 bp):
AAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGCCTTGAGGCTCAACTCACTTCTCGCA
ATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
TCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAGCAGAAATTGAAAATACCTCAGCATGCCTT
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCA
GCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGACTAATTG
Found at i:66242497 original size:473 final size:469
Alignment explanation
Indices: 66241354--66243185 Score: 2187
Period size: 473 Copynumber: 3.8 Consensus size: 469
66241344 AAAGGCAAAA
* * * * * * * *
66241354 TTTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGTCTCTCACAATA
1 TTTGAAAGACAAAAATTGAAAATACCTCAGCATGT--CTTAAGGCTCAACTCATTTCTCGCAATA
* *
66241419 CGAGTTGATTTTTTTTTTGACAACAGAAATTGAAATTACCTCAACATGTCCTGAGGCTCAACTCA
64 TGAGTTGA---TTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCA
* *
66241484 CCTCTCGCAATATGAGTTGAATTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACT
126 CCTCTCGCAATATGAGTTGAATTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCT
* * * * * *
66241549 CAACATGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGAAAGATAAAAATTG
191 CAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTG
* * *
66241614 AAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT-----TT
256 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAATA
* *
66241674 GA--CAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAG
321 GATTGAACAGAAATTGAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
66241737 TTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGG
385 TTG-ATTTTTTT------T-TAAA-TG--AA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGG
**
66241802 CTCAACTCACCTCTCGCAATATGAGTTGATTT
438 CTCAACTCATTTCTCGCAATATGAGTTGATTT
66241834 TTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATG
* * *
66241899 AGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATCTCT
66 AGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCT
* *
66241964 CGCAATATGAGTTGAATTTTTTTAAAAAATATAAATTGAAAAGCAGAAATTAAAATTACCTCAAC
131 CGCAATATGAGTTGAA-TTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAAC
66242029 GTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAA
195 GTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAA
** *
66242093 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAA
260 TACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG--AAA-ATAG
* **
66242158 ATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
322 ATTGAACAGAAATTGAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
66242223 TGATTTTTTTTTAAA-G-ACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTC
386 TGATTTTTTTTTAAATGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTC
66242286 TCGCAATATGAGTTGATTT
451 TCGCAATATGAGTTGATTT
* *
66242305 TTTGAAAGACAAAAATTGAAAATACCTCAGCTTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATG
*
66242370 AGTTGATTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
66 AGTTGA--TTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCT
66242435 CTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCA
129 CTCGCAATATGAGTTGAA-TTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCA
* *
66242500 ACGTGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTGACAAACAGAAATTGAA
193 ACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAA
* *
66242564 ATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTGAAAATAGA
258 AATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAATAGA
* * * **
66242629 TTGAAACACAAAAATTGACAATACCTCAGTGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
323 TTG--A-ACAGAAATTGA-AATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
**** *
66242694 GTTGATTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAAC
384 GTTGATTTT----TTTTTAAA-TGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAAC
66242759 TCATTTCTCGCAATATGAGTTGATTTTTTT
444 TCATTTCTCGCAATATGAGTTGA----TTT
*
66242789 TTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATG
* * * * **
66242854 AGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTC
66 AGTTGATTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTC
* *
66242919 TCGCAATATGAGTTG-ATTTTTT------T-T---TTGACAA-CAGAAATTGAAATTACCTCAGC
130 TCGCAATATGAGTTGAATTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAAC
*
66242972 GTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTTTTTGAAAAATATAAATTGA
195 GTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTTG----------A---A
* * * * *
66243036 AAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTTACCTT-TCGCAGTATGAGT
244 AAA-CAGAAATTGAAAATACCTCAGCGTGTCC-TGAGGCTCAACTCA-TTTCTCGCAATATGAGT
** * * **
66243099 TGATTTTT---TTTTGA--AAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCA
306 TGATTTTTGAAAATAGATTGAA-CAGAAATTG-AAATACCTCAGCGTGTCTTGAGGCTCAACTCA
66243159 CCTCTCGCAATATGAGTTGATTTTTTT
369 CCTCTCGCAATATGAGTTGATTTTTTT
66243186 GAAACAGAAA
Statistics
Matches: 1200, Mismatches: 101, Indels: 106
0.85 0.07 0.08
Matches are distributed among these distances:
470 62 0.05
471 139 0.12
472 2 0.00
473 295 0.25
474 3 0.00
475 144 0.12
476 81 0.07
477 8 0.01
478 32 0.03
479 2 0.00
480 150 0.12
481 7 0.01
482 11 0.01
483 59 0.05
484 84 0.07
485 58 0.05
486 5 0.00
487 56 0.05
488 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (469 bp):
TTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATG
AGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGAATTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACG
TGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAT
ACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAATAGATTG
AACAGAAATTGAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTTTTAAATGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCA
ATATGAGTTGATTT
Found at i:66242839 original size:78 final size:78
Alignment explanation
Indices: 66242723--66243019 Score: 458
Period size: 75 Copynumber: 3.9 Consensus size: 78
66242713 AATTGAACAG
* * *
66242723 AAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
66242788 TTTTGAAAGACAA
66 TTTTGAAAGACAA
66242801 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---TTT
1 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
66242863 TTTTGAAAGACAA
66 TTTTGAAAGACAA
66242876 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
* *
66242941 TTTTGACA-ACAG
66 TTTTGAAAGACAA
* * * ** * *
66242953 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTTT
1 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
66243018 TT
66 TT
66243020 GAAAAATATA
Statistics
Matches: 204, Mismatches: 12, Indels: 7
0.91 0.05 0.03
Matches are distributed among these distances:
75 75 0.37
77 63 0.31
78 66 0.32
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (78 bp):
AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
TTTTGAAAGACAA
Found at i:66243107 original size:90 final size:91
Alignment explanation
Indices: 66242950--66243129 Score: 256
Period size: 90 Copynumber: 2.0 Consensus size: 91
66242940 TTTTTGACAA
*
66242950 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGA-AT
1 CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATAT
* *
66243014 TTTTTTGAAAAATATAAATTGAAAAG
66 TTTTTTGAAAAACAGAAATTGAAAAG
* * * * *
66243040 CAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTTACCTTTCGCAGTATGAGTTGATT
1 CAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAATTGATA
*
66243104 TTTTTTTGAAAAGCAGAAATTGAAAA
65 TTTTTTTGAAAAACAGAAATTGAAAA
66243130 TACCTCAATG
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
89 2 0.03
90 54 0.68
91 23 0.29
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (91 bp):
CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATAT
TTTTTTGAAAAACAGAAATTGAAAAG
Found at i:66243124 original size:77 final size:77
Alignment explanation
Indices: 66243032--66243185 Score: 254
Period size: 77 Copynumber: 2.0 Consensus size: 77
66243022 AAAATATAAA
* * * *
66243032 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTTTCGCAGTATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
66243097 GTTGATTTTTTT
66 GTTGATTTTTTT
* *
66243109 TTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
66243174 GTTGATTTTTTT
66 GTTGATTTTTTT
66243186 GAAACAGAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
77 71 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (77 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTT
Found at i:66243152 original size:167 final size:166
Alignment explanation
Indices: 66242876--66243189 Score: 470
Period size: 167 Copynumber: 1.9 Consensus size: 166
66242866 TGAAAGACAA
* * *
66242876 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
* * *
66242941 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
66 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
66243006 AATTGAATTTTTTTGAAAAATATAAATTGAAAAGCAG
131 AATTG-ATTTTTTTGAAAAATATAAATTGAAAAGCAG
* * * *
66243043 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTT-TCGCAGTATGAGTTGA-TTTT
1 AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCA-CTTCTCGCAATATGAGTTGATTTTT
* *
66243106 TTTTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
65 TTTTTGAAAA-CAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
*
66243171 TGAGTTGATTTTTTTGAAA
129 TGAATTGATTTTTTTGAAA
66243190 CAGAAATAAA
Statistics
Matches: 132, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
166 25 0.19
167 105 0.80
168 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (166 bp):
AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AATTGATTTTTTTGAAAAATATAAATTGAAAAGCAG
Found at i:66251576 original size:12 final size:12
Alignment explanation
Indices: 66251556--66251603 Score: 87
Period size: 12 Copynumber: 4.0 Consensus size: 12
66251546 TGGGATATGC
*
66251556 AATGTATGAATG
1 AATGCATGAATG
66251568 AATGCATGAATG
1 AATGCATGAATG
66251580 AATGCATGAATG
1 AATGCATGAATG
66251592 AATGCATGAATG
1 AATGCATGAATG
66251604 TCAAATGAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.27
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:66251614 original size:4 final size:4
Alignment explanation
Indices: 66251556--66251603 Score: 60
Period size: 4 Copynumber: 12.0 Consensus size: 4
66251546 TGGGATATGC
* * * *
66251556 AATG TATG AATG AATG CATG AATG AATG CATG AATG AATG CATG AATG
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG
66251604 TCAAATGAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.27
Consensus pattern (4 bp):
AATG
Found at i:66255805 original size:33 final size:31
Alignment explanation
Indices: 66255768--66255836 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 31
66255758 AGTACACTTG
*
66255768 TATTATTTATGTA-TAATTATTGAAAAGATATTT
1 TATTATTTAT-TATTAATTAGT-AAAAGATA-TT
*
66255801 TATTATTTATTATTAATTAGTAAAATATATT
1 TATTATTTATTATTAATTAGTAAAAGATATT
66255832 TATTA
1 TATTA
66255837 GATGTTTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 7 0.21
32 9 0.27
33 17 0.52
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.54
Consensus pattern (31 bp):
TATTATTTATTATTAATTAGTAAAAGATATT
Found at i:66256958 original size:18 final size:18
Alignment explanation
Indices: 66256935--66256971 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
66256925 ATGGACTAGG
66256935 TAGTATTTAATACTAAGA
1 TAGTATTTAATACTAAGA
66256953 TAGTATTTAATACTAAGA
1 TAGTATTTAATACTAAGA
66256971 T
1 T
66256972 TCTAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41
Consensus pattern (18 bp):
TAGTATTTAATACTAAGA
Found at i:66259491 original size:11 final size:11
Alignment explanation
Indices: 66259475--66259503 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
66259465 ACAAACAAAT
66259475 AGAATTCCTTA
1 AGAATTCCTTA
66259486 AGAATTCCTTA
1 AGAATTCCTTA
66259497 AGAATTC
1 AGAATTC
66259504 TCAAATGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (11 bp):
AGAATTCCTTA
Found at i:66263964 original size:3 final size:3
Alignment explanation
Indices: 66263950--66264000 Score: 50
Period size: 3 Copynumber: 16.3 Consensus size: 3
66263940 GACAATAAAG
* *
66263950 AAT AAT AGT AAT AAT AAT AAT -AT AGAT AAT AAT ATAT ACAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT A-AT A-AT AAT AAT
66263997 AAT A
1 AAT A
66264001 GTTAGAGATA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
2 2 0.05
3 30 0.75
4 8 0.20
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:66264215 original size:3 final size:3
Alignment explanation
Indices: 66264207--66264251 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
66264197 TATAAATATG
* * *
66264207 ATA ATA ATA ATA ATG ATA ATA ATA ATA AT- ATA GTA GTA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
66264252 AAGTAAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:66264216 original size:15 final size:16
Alignment explanation
Indices: 66264198--66264235 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
66264188 AAATATAAGT
66264198 ATAAAT-ATGATAATA
1 ATAAATAATGATAATA
66264213 AT-AATAATGATAATA
1 ATAAATAATGATAATA
66264228 AT-AATAAT
1 ATAAATAAT
66264236 ATAGTAGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 3 0.14
15 19 0.86
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (16 bp):
ATAAATAATGATAATA
Found at i:66264627 original size:35 final size:32
Alignment explanation
Indices: 66264585--66264678 Score: 100
Period size: 37 Copynumber: 2.8 Consensus size: 32
66264575 TATGCATAAC
66264585 AATAAAAATACAATATTAAAATATATATACGAGT
1 AATAAAAATACAATATTAAAATATATATAC-A-T
**
66264619 AATAAAAAATGTATCCGTATTAAAA-ATATATACAT
1 AAT-AAAAA--TA-CAATATTAAAATATATATACAT
66264654 AATAAAAATACAATATTTAAAATAT
1 AATAAAAATACAATA-TTAAAATAT
66264679 TTACACAGTA
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
31 3 0.06
32 8 0.16
33 2 0.04
34 8 0.16
35 9 0.18
36 1 0.02
37 10 0.20
38 9 0.18
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (32 bp):
AATAAAAATACAATATTAAAATATATATACAT
Found at i:66264659 original size:17 final size:17
Alignment explanation
Indices: 66264601--66264663 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
66264591 AATACAATAT
66264601 TAAAATATATATACGAGTAA
1 TAAAA-ATATATAC-A-TAA
* * * *
66264621 TAAAAAATGTATCCGTAT
1 T-AAAAATATATACATAA
66264639 TAAAAATATATACATAA
1 TAAAAATATATACATAA
66264656 TAAAAATA
1 TAAAAATA
66264664 CAATATTTAA
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
17 20 0.59
18 3 0.09
20 7 0.21
21 4 0.12
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.30
Consensus pattern (17 bp):
TAAAAATATATACATAA
Found at i:66264833 original size:22 final size:22
Alignment explanation
Indices: 66264791--66264835 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
66264781 GTACATAACA
*
66264791 TAAATATCATACATTTAATATC
1 TAAATATCATACATATAATATC
66264813 TAAATATACATACATATATATAT
1 TAAATAT-CATACATATA-ATAT
66264836 AGTATTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 7 0.35
23 9 0.45
24 4 0.20
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAATATCATACATATAATATC
Found at i:66265582 original size:18 final size:18
Alignment explanation
Indices: 66265561--66265601 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
66265551 TCGAAAATAA
66265561 AATAAAAAGGAAA-AAAAT
1 AATAAAAA-GAAAGAAAAT
*
66265579 AATAAATAGAAAGAAAAT
1 AATAAAAAGAAAGAAAAT
66265597 AATAA
1 AATAA
66265602 TAATGTGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (18 bp):
AATAAAAAGAAAGAAAAT
Found at i:66265600 original size:21 final size:22
Alignment explanation
Indices: 66265560--66265604 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
66265550 TTCGAAAATA
66265560 AAATAAAAAGGAAAAAAATAAT
1 AAATAAAAAGGAAAAAAATAAT
* *
66265582 AAATAGAAA-GAAAATAATAAT
1 AAATAAAAAGGAAAAAAATAAT
66265603 AA
1 AA
66265605 TGTGATATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.16
Consensus pattern (22 bp):
AAATAAAAAGGAAAAAAATAAT
Found at i:66268628 original size:32 final size:32
Alignment explanation
Indices: 66268580--66268670 Score: 105
Period size: 32 Copynumber: 2.9 Consensus size: 32
66268570 ATATTCAAGT
* * *
66268580 AATATTACTTG-A-AGTTATATTTATTTATGA
1 AATATTAATTGAATAGTTATATCTATTTAGGA
* *
66268610 AATGTTATTTGAATAGTTATATCTATTTAGGA
1 AATATTAATTGAATAGTTATATCTATTTAGGA
* *
66268642 TATATTAATTGAATAATTATATCTATTTA
1 AATATTAATTGAATAGTTATATCTATTTA
66268671 AAAGGTATGA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
30 9 0.18
31 1 0.02
32 41 0.80
ACGTcount: A:0.37, C:0.03, G:0.10, T:0.49
Consensus pattern (32 bp):
AATATTAATTGAATAGTTATATCTATTTAGGA
Found at i:66275094 original size:2 final size:2
Alignment explanation
Indices: 66275082--66275119 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
66275072 ATACAACAAA
* *
66275082 AT AT A- AT AT AT AT AT AT AT AT AA AT AT AA AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
66275120 CAACAATCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:66275250 original size:25 final size:26
Alignment explanation
Indices: 66275188--66275251 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
66275178 AAAAGGTTCG
* *
66275188 AATAAACAATATACAAGAAAACTTAA
1 AATAAATAATATACAAAAAAACTTAA
*
66275214 AATAAATGAATATA-AAAAAAATTTAA
1 AATAAAT-AATATACAAAAAAACTTAA
66275240 AATAAATAATAT
1 AATAAATAATAT
66275252 TATATATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.15
26 23 0.68
27 6 0.18
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.25
Consensus pattern (26 bp):
AATAAATAATATACAAAAAAACTTAA
Found at i:66277132 original size:95 final size:95
Alignment explanation
Indices: 66276912--66277195 Score: 505
Period size: 95 Copynumber: 3.0 Consensus size: 95
66276902 GTAATCTCCG
* *
66276912 ATCTATTCCACTGTCAAATGCAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTGTAGACAC
1 ATCTATTCCACTGTCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAG--TC
66276977 AGGGAGGTAAAATCTGCCATCTTTGATCTTCA
64 AGGGAGGTAAAATCTGCCATCTTTGATCTTCA
66277009 ATCTATTCCACTGTCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAG
1 ATCTATTCCACTGTCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAG
66277074 GGAGGTAAAATCTGCCATCTTTGATCTTCA
66 GGAGGTAAAATCTGCCATCTTTGATCTTCA
* *
66277104 ATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAG
1 ATCTATTCCACTGTCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAG
*
66277169 GGAGGTAAAATCTGCCATCTTCGATCT
66 GGAGGTAAAATCTGCCATCTTTGATCT
66277196 GCTTCGCTGC
Statistics
Matches: 182, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
95 122 0.67
97 60 0.33
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (95 bp):
ATCTATTCCACTGTCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAG
GGAGGTAAAATCTGCCATCTTTGATCTTCA
Found at i:66277280 original size:44 final size:43
Alignment explanation
Indices: 66277178--66277902 Score: 430
Period size: 44 Copynumber: 16.5 Consensus size: 43
66277168 GGGAGGTAAA
* * * *
66277178 ATCTGCCATCTTCGATCTGCTTCGCTGCCAACTACAGGAAGGCAAG
1 ATCTGCTATCTTCGATCTACTTC-C-ACCAA-TACAGGAAGACAAG
* * * * *
66277224 ATCTACAATCTTCGATCTACTTCACGCCAATACATGAAGATAAG
1 ATCTGCTATCTTCGATCTACTTC-CACCAATACAGGAAGACAAG
* * **
66277268 ATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTT--CCACCAATACAGGAAGACAAG
* * * * * *
66277313 ATCCGC-ATCGTCGATCCACTTCCTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCC-ACCAATACAGGAAGACAAG
* * *
66277356 ATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTC-CACCAATACAGGAAGACAAG
* * **
66277400 ATCTGCTTTCTGCGATCTACTTTGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTAC-TT-CCACCAATACAGGAAGACAAG
* * * * *
66277445 ATCTGC-ATCGTCGATCCACTTCCTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCC-ACCAATACAGGAAGACAAG
* * *
66277488 ATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTC-CACCAATACAGGAAGACAAG
* * **
66277532 ATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTT--CCACCAATACAGGAAGACAAG
* * * *
66277577 ATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCC-ACCAATACAGGAAGACAAG
* ** * * *
66277620 ATCTGCTACCTTCGATCTACTTCTTGCC----CCGGGAGA-TAG
1 ATCTGCTATCTTCGATCTACTTC-CACCAATACAGGAAGACAAG
* * * * * * * ** *
66277659 AACT-ATCAGCTTCAATGTAC-TCCACTGTAAT-CAGGGAGGTAAA
1 ATCTGCT-ATCTTCGATCTACTTCCAC--CAATACAGGAAGACAAG
* * * *
66277702 ATCTGCCATCTTCGATCTGCTTCGCTGCCAACTACAGGAAGGCAAG
1 ATCTGCTATCTTCGATCTACTTC-C-ACCAA-TACAGGAAGACAAG
* * * * *
66277748 ATCTACAATCTTCGATCTACTTCACGCCAATACATGAAGATAAG
1 ATCTGCTATCTTCGATCTACTTC-CACCAATACAGGAAGACAAG
* * **
66277792 ATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTT--CCACCAATACAGGAAGACAAG
* * * * *
66277837 ATCTGC-ATCTTTGATCCACTTCCTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCC-ACCAATACAGGAAGACAAG
* *
66277880 ATCTGCTACCTTCGATCTCCTTC
1 ATCTGCTATCTTCGATCTACTTC
66277903 TTGCCCCGGG
Statistics
Matches: 519, Mismatches: 128, Indels: 66
0.73 0.18 0.09
Matches are distributed among these distances:
37 1 0.00
38 3 0.01
39 14 0.03
40 5 0.01
42 14 0.03
43 101 0.19
44 225 0.43
45 100 0.19
46 56 0.11
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (43 bp):
ATCTGCTATCTTCGATCTACTTCCACCAATACAGGAAGACAAG
Found at i:66277351 original size:88 final size:87
Alignment explanation
Indices: 66277178--66277902 Score: 540
Period size: 88 Copynumber: 8.3 Consensus size: 87
66277168 GGGAGGTAAA
* * ** ** * *
66277178 ATCTGCCATCTTCGATCTGCTTCGCTGCCAACTACAGGAAGGCAAGATCTACAATCTTCGATCTA
1 ATCTGCTATCTTCGATCTACTTCGCCACCAA-TATGGGAAGACAAGATCTGC-ATCTTCGATCTA
* *
66277243 CTTCACGCCAATACATGAAGATAAG
64 CTTC-CACCAATACAGGAAGATAAG
* * * * *
66277268 ATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCCGCATCGTCGATCCACT
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACT
* *
66277333 TCCTACCAATATAGGAAGATAGG
66 TCC-ACCAATACAGGAAGATAAG
* * * *** * *
66277356 ATCTGCTACCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCTAC
** *
66277420 TTTGCCACCAATATGGGAAGACAAG
65 -TT-CCACCAATACAGGAAGATAAG
* * * * * * *
66277445 ATCTGC-ATCGTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTAC
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCTAC
* * *
66277508 TTCACGCCAATACATGAAGACAAG
65 TTC-CACCAATACAGGAAGATAAG
* * *
66277532 ATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACT
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACT
* *
66277597 TCCTACCAATATAGGAAGATAGG
66 TCC-ACCAATACAGGAAGATAAG
* * * * * * *
66277620 ATCTGCTACCTTCGATCTACTTCTTGCC-CC-----GGG-AGA-TAGAACTATCAGCTTCAATGT
1 ATCTGCTATCTTCGATCTACTTC--GCCACCAATATGGGAAGACAAGATCT-GCATCTTCGATCT
* * * *
66277677 AC-TCCACTGTAAT-CAGGGAGGTAAA
63 ACTTCCAC--CAATACAGGAAGATAAG
* * ** ** * *
66277702 ATCTGCCATCTTCGATCTGCTTCGCTGCCAACTACAGGAAGGCAAGATCTACAATCTTCGATCTA
1 ATCTGCTATCTTCGATCTACTTCGCCACCAA-TATGGGAAGACAAGATCTGC-ATCTTCGATCTA
* *
66277767 CTTCACGCCAATACATGAAGATAAG
64 CTTC-CACCAATACAGGAAGATAAG
* * * *
66277792 ATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCACT
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACT
* *
66277857 TCCTACCAATATAGGAAGATAGG
66 TCC-ACCAATACAGGAAGATAAG
* *
66277880 ATCTGCTACCTTCGATCTCCTTC
1 ATCTGCTATCTTCGATCTACTTC
66277903 TTGCCCCGGG
Statistics
Matches: 489, Mismatches: 119, Indels: 56
0.74 0.18 0.08
Matches are distributed among these distances:
80 2 0.00
81 4 0.01
82 35 0.07
83 16 0.03
84 3 0.01
86 1 0.00
87 49 0.10
88 214 0.44
89 98 0.20
90 65 0.13
91 2 0.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (87 bp):
ATCTGCTATCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACT
TCCACCAATACAGGAAGATAAG
Found at i:66277359 original size:132 final size:132
Alignment explanation
Indices: 66277233--66277902 Score: 878
Period size: 132 Copynumber: 5.1 Consensus size: 132
66277223 GATCTACAAT
*
66277233 CTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
* * *
66277298 GTATGGGAAGACAAGATCCGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
66277363 AC
131 AC
* *
66277365 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTTGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
*
66277430 ATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
66277495 AC
131 AC
*
66277497 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
66277562 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
66277627 AC
131 AC
** ** * * * ** * * *
66277629 CTTCGATCTACTTCTTGCC----CCGGGAGAT-AGAACT-ATCAGCTTCAATGTAC-T--CCACT
1 CTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCT-TTCTGCGATCTACTTCGCCAC-
* * ** * * ** *
66277685 GTAATCA-GGGAGGTA-AA-ATCTGCCATCTTCGATCTGCTTCGCTGCCAACTACAGGAAGGCAA
64 -CAAT-ATGGGAAG-ACAAGATCTG-CATCTTCGATCCACTTC-CTACCAA-TATAGGAAGATAG
* * *
66277747 GATCTACAAT
123 GATCTGCTAC
66277757 CTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
*
66277822 ATATGGGAAGACAAGATCTGCATCTTTGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
66277887 AC
131 AC
*
66277889 CTTCGATCTCCTTC
1 CTTCGATCTACTTC
66277903 TTGCCCCGGG
Statistics
Matches: 460, Mismatches: 58, Indels: 40
0.82 0.10 0.07
Matches are distributed among these distances:
124 4 0.01
125 5 0.01
126 27 0.06
127 21 0.05
128 38 0.08
132 309 0.67
133 21 0.05
134 26 0.06
135 5 0.01
136 4 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (132 bp):
CTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
AC
Found at i:66277830 original size:260 final size:260
Alignment explanation
Indices: 66277126--66278043 Score: 1287
Period size: 260 Copynumber: 3.5 Consensus size: 260
66277116 GCCAAATACA
** * *
66277126 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTC
1 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTC
66277191 GATCTGCTTCGCTGCCAACTACAGGAAGGCAAGATCTACAATCTTCGATCTACTTCACGCCAATA
66 GATCTGCTTCGCTGCCAACTACAGGAAGGCAAGATCTACAATCTTCGATCTACTTCACGCCAATA
* * *
66277256 CATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCCGCAT
131 CATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCAT
* ** **
66277321 CGTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAA
196 CTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCTTGCCCC
*** ** * * * * *
66277386 TACATGA-AGACAAGATCTGCTTTCTGCGATCTACTTTGCCAC--CAAT-ATGGGAAG-ACAAGA
1 GGGA-GATAGA-ACTATCAGC--T-T-CAATGTAC--T-CCACTGTAATCA-GGGAGGTA-AA-A
* ** * * ** * * * *
66277446 TCTG-CATCGTCGATCCACTTC-CTACCAA-TATAGGAAGATAGGATCTGCTACCTTCGATCTAC
54 TCTGCCATCTTCGATCTGCTTCGCTGCCAACTACAGGAAGGCAAGATCTACAATCTTCGATCTAC
*
66277508 TTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGA
119 TTCACGCCAATACATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGA
66277573 CAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCT
184 CAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCT
66277638 ACTTCTTGCCCC
249 ACTTCTTGCCCC
66277650 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTC
1 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTC
66277715 GATCTGCTTCGCTGCCAACTACAGGAAGGCAAGATCTACAATCTTCGATCTACTTCACGCCAATA
66 GATCTGCTTCGCTGCCAACTACAGGAAGGCAAGATCTACAATCTTCGATCTACTTCACGCCAATA
66277780 CATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCAT
131 CATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCAT
* *
66277845 CTTTGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTCCTTCTTGCCCC
196 CTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCTTGCCCC
66277910 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTC
1 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTC
* * *
66277975 GATCTGCTTTGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTA-TTCCACTGCCAG
66 GATCTGCTTCGCTGCCAACTACAGGAAGGCAAGATCTACAATCTTCGATCTACTT-CAC-GCCA-
66278039 ATACA
128 ATACA
66278044 GGGAGATAGA
Statistics
Matches: 576, Mismatches: 59, Indels: 44
0.85 0.09 0.06
Matches are distributed among these distances:
256 4 0.01
257 6 0.01
258 24 0.04
259 16 0.03
260 288 0.50
261 12 0.02
262 5 0.01
263 9 0.02
264 165 0.29
265 14 0.02
266 23 0.04
267 6 0.01
268 4 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (260 bp):
GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTC
GATCTGCTTCGCTGCCAACTACAGGAAGGCAAGATCTACAATCTTCGATCTACTTCACGCCAATA
CATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCAT
CTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCTTGCCCC
Found at i:66278122 original size:95 final size:95
Alignment explanation
Indices: 66278016--66278204 Score: 317
Period size: 95 Copynumber: 2.0 Consensus size: 95
66278006 AGATCTACAA
* *
66278016 TCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC-CATG
1 TCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCAC-TG
66278080 TAGTCAGGGAAGTAAAATCTGCCATCTTTGC
65 TAGTCAGGGAAGTAAAATCTGCCATCTTTGC
* *
66278111 TCTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACTCCACTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
*
66278176 AGTCAGGGAGGTAAAATCTGCCATCTTTG
66 AGTCAGGGAAGTAAAATCTGCCATCTTTG
66278205 ATCGGCTTCG
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
95 87 0.99
96 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (95 bp):
TCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
AGTCAGGGAAGTAAAATCTGCCATCTTTGC
Found at i:66278264 original size:134 final size:134
Alignment explanation
Indices: 66278111--66278476 Score: 617
Period size: 134 Copynumber: 2.7 Consensus size: 134
66278101 CCATCTTTGC
* * *
66278111 TCTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACTCCACTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
66278176 AGTCAGGGAGGTAAAATCTGCCATCTTTGATCGGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTTGATCGGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
66278241 GCAA
131 GCAA
* *
66278245 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
* *
66278310 GGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTTGATCGGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
66278375 GCAA
131 GCAA
* *
66278379 TCTTCAATCTATTCCACTGCCAAATACAGGGACA-AGTGTTATCGGCTTCAATGTACTCCACTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
*
66278443 AGTCACATGGAGGTAAAATCTGCCATCTTTGATC
66 AGT--CAGGGAGGTAAAATCTGCCATCTTTGATC
66278477 TTCAATCTAT
Statistics
Matches: 217, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
133 29 0.13
134 160 0.74
135 28 0.13
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (134 bp):
TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGT
AGTCAGGGAGGTAAAATCTGCCATCTTTGATCGGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
GCAA
Found at i:66278265 original size:46 final size:46
Alignment explanation
Indices: 66278215--66278408 Score: 145
Period size: 46 Copynumber: 4.3 Consensus size: 46
66278205 ATCGGCTTCG
66278215 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
* * * *
66278261 CTGCCAAATACAGGGA-G-ATAGAAT-T--ATTGGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGGCA-AG-ATCTGCAAT--CTTCAATCTATTCCA
*** * * * * ** * *
66278306 CTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT-ATTCCA
66278349 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
66278395 CTGCCAAATACAGG
1 CTGCCAAATACAGG
66278409 GACAAGTGTT
Statistics
Matches: 107, Mismatches: 27, Indels: 28
0.66 0.17 0.17
Matches are distributed among these distances:
42 8 0.07
43 16 0.15
44 3 0.03
45 24 0.22
46 56 0.52
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
Found at i:66278317 original size:229 final size:229
Alignment explanation
Indices: 66277912--66278338 Score: 712
Period size: 229 Copynumber: 1.9 Consensus size: 229
66277902 CTTGCCCCGG
66277912 GAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTCGA
1 GAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTCGA
* * *
66277977 TCTGCTTTGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAGATA
66 TCGGCTTCGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAAATA
*
66278042 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCCATGTAGTCAGGGAAGTAAAATCTGCCATCT
131 CAGGGAGATAGAATTATCGGCTTCAATGTACTCCCATGTAGTCAGGGAAGTAAAATCTGCCATCT
66278107 TTGCTCTTCAATCTATTCCACTGCCAAATGCAGA
196 TTGCTCTTCAATCTATTCCACTGCCAAATGCAGA
** * * * *
66278141 GAGATAGAGTTATCGGCTTTAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGA
1 GAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTCGA
*
66278206 TCGGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATA
66 TCGGCTTCGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAAATA
* * *
66278271 CAGGGAGATAGAATTATTGGCTTCAATGTACT-CCACTGTGGTCAGGGAGGTAAAATCTGCCATC
131 CAGGGAGATAGAATTATCGGCTTCAATGTACTCCCA-TGTAGTCAGGGAAGTAAAATCTGCCATC
66278335 TTTG
195 TTTG
66278339 ATCTGCTTCG
Statistics
Matches: 183, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
228 3 0.02
229 180 0.98
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (229 bp):
GAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTCGA
TCGGCTTCGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAAATA
CAGGGAGATAGAATTATCGGCTTCAATGTACTCCCATGTAGTCAGGGAAGTAAAATCTGCCATCT
TTGCTCTTCAATCTATTCCACTGCCAAATGCAGA
Found at i:66278525 original size:230 final size:229
Alignment explanation
Indices: 66278244--66278706 Score: 811
Period size: 230 Copynumber: 2.0 Consensus size: 229
66278234 AAGATCTGCA
*
66278244 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
* *
66278309 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
*
66278374 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGACA-AGTGTTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGACATAGAGTTATCGGCTTCAATGTACTCC
* *
66278438 ACTGTAGTCACATGGAGGTAAAATCTGCCATCTTTG
196 ACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTCG
*
66278474 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
66278539 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATATAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
*
66278604 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGACATAGAGTTATCGGCTTCAATGTACTCC
*
66278669 ACTGTTGTCAGGGAGGTAAAATCTGCCATCTTCG
196 ACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCG
66278703 ATCT
1 ATCT
66278707 GCTTCGCTGT
Statistics
Matches: 222, Mismatches: 10, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
229 28 0.13
230 163 0.73
231 31 0.14
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (229 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGACATAGAGTTATCGGCTTCAATGTACTCC
ACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCG
Found at i:66278596 original size:364 final size:363
Alignment explanation
Indices: 66277910--66278738 Score: 1394
Period size: 364 Copynumber: 2.3 Consensus size: 363
66277900 TTCTTGCCCC
* * *
66277910 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTC
1 GGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTC
* * *
66277975 GATCTGCTTTGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAGA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
*
66278040 TACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCCATGTAGTCAGGGAAGTAAAATCTGCCAT
131 TACAGGGACATAGAGTTATCGGCTTCAATGTACTCCCATGTAGTCAGGGAAGTAAAATCTGCCAT
* * *
66278105 CTTTGCTCTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACTC
196 CTTTGATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTC
*
66278170 CACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCGGCTTCGCTGCCAAATACAGGAAGGCA
261 CACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCGGCTTCGCTGCCAAATACAGGAAGGCA
66278235 AGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
326 AGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
* * *
66278273 GGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTC
66278338 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
* * *
66278403 TACAGGGACA-AGTGTTATCGGCTTCAATGTACT-CCACTGTAGTCACATGGAGGTAAAATCTGC
131 TACAGGGACATAGAGTTATCGGCTTCAATGTACTCCCA-TGTAGT--CAGGGAAGTAAAATCTGC
*
66278466 CATCTTTGATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
193 CATCTTTGATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTA
* *
66278531 CTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATATAGGAAG
258 CTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCGGCTTCGCTGCCAAATACAGGAAG
66278596 GCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
323 GCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
* *
66278637 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTTGTCAGGGAGGTAAAATCTGCCATCTTC
1 GGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTC
* *
66278702 GATCTGCTTCGCTGTC-AGTACAGGAAGGCAAGATCTG
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTG
66278739 ATAACTTCAA
Statistics
Matches: 437, Mismatches: 26, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
361 3 0.01
362 28 0.06
363 150 0.34
364 256 0.59
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (363 bp):
GGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTC
GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
TACAGGGACATAGAGTTATCGGCTTCAATGTACTCCCATGTAGTCAGGGAAGTAAAATCTGCCAT
CTTTGATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTC
CACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCGGCTTCGCTGCCAAATACAGGAAGGCA
AGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
Found at i:66278632 original size:134 final size:133
Alignment explanation
Indices: 66278474--66278738 Score: 485
Period size: 134 Copynumber: 2.0 Consensus size: 133
66278464 GCCATCTTTG
66278474 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
66278539 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATATAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCC-AATACAGGAAGGCAAGATC
66278604 TGCA
130 TGCA
66278608 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* * *
66278673 TTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCT
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCT
66278738 G
131 G
66278739 ATAACTTCAA
Statistics
Matches: 127, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
133 19 0.15
134 108 0.85
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (133 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAATACAGGAAGGCAAGATCT
GCA
Found at i:66279415 original size:108 final size:108
Alignment explanation
Indices: 66279215--66279421 Score: 290
Period size: 108 Copynumber: 1.9 Consensus size: 108
66279205 AAATGCTTGA
* *
66279215 AAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAATCAA
1 AAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAACTCTAAACAAACAAATCAA
*
66279280 TCAAGATAGCAAATTTTGCTGAGATACAAGATGAATAAGATGG
66 TCAAGATAGCAAATTTTGCTGAGATACAAAATGAATAAGATGG
* * * * ** * *
66279323 AAAATATTATCACAATGGATAAGATGAAAATTTGTTGAGAGCAAAACTCTAAATGAACACATTAA
1 AAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAACTCTAAACAAACAAATCAA
*
66279388 TCAGGATAGCAAATTTTGCT-AGAATACAAAATGA
66 TCAAGATAGCAAATTTTGCTGAG-ATACAAAATGA
66279422 GAATAAATTA
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
107 2 0.02
108 84 0.98
ACGTcount: A:0.48, C:0.11, G:0.16, T:0.25
Consensus pattern (108 bp):
AAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAACTCTAAACAAACAAATCAA
TCAAGATAGCAAATTTTGCTGAGATACAAAATGAATAAGATGG
Found at i:66279768 original size:5 final size:6
Alignment explanation
Indices: 66279743--66279806 Score: 53
Period size: 7 Copynumber: 10.2 Consensus size: 6
66279733 TTGGCCTCTC
66279743 CTTTTT CTTTTT CTTTCTT C-TTTT CTTTTTT CATTTTTT CATTTTT C-TTTT
1 CTTTTT CTTTTT CTTT-TT CTTTTT C-TTTTT C--TTTTT C-TTTTT CTTTTT
66279794 CGTTTTT -TTTTT C
1 C-TTTTT CTTTTT C
66279807 AAGTGAAGTA
Statistics
Matches: 50, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
5 13 0.26
6 12 0.24
7 18 0.36
8 7 0.14
ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78
Consensus pattern (6 bp):
CTTTTT
Found at i:66280235 original size:12 final size:11
Alignment explanation
Indices: 66280218--66280271 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
66280208 GGTAGAGTTT
66280218 TTTTGTTTTTA
1 TTTTGTTTTTA
66280229 CTTTTGTTTTTTA
1 -TTTTG-TTTTTA
*
66280242 TTTGGTTTTTA
1 TTTTGTTTTTA
66280253 -TTTGTTCTTT-
1 TTTTGTT-TTTA
66280263 TTTT-TTTTT
1 TTTTGTTTTT
66280272 GGCCTCCACT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
9 3 0.08
10 7 0.19
11 12 0.32
12 9 0.24
13 6 0.16
ACGTcount: A:0.06, C:0.04, G:0.09, T:0.81
Consensus pattern (11 bp):
TTTTGTTTTTA
Found at i:66281610 original size:62 final size:62
Alignment explanation
Indices: 66281506--66281689 Score: 314
Period size: 62 Copynumber: 3.0 Consensus size: 62
66281496 CTAAACTCGA
* * * *
66281506 CGTACTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTGATGCATGAACG
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGAATGAACG
* *
66281568 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATAAAATGTAATGTTAATGTATGAACG
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGAATGAACG
66281630 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGAATGAA
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGAATGAA
66281690 GAGATACGTG
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 115 1.00
ACGTcount: A:0.33, C:0.04, G:0.21, T:0.42
Consensus pattern (62 bp):
CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGAATGAACG
Found at i:66283681 original size:20 final size:20
Alignment explanation
Indices: 66283626--66283681 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
66283616 TCAAAGGAAA
*
66283626 ATACAACAAAATATAATATAT
1 ATACAACAATATA-AATATAT
*
66283647 ATATATA-AATATAAATATAT
1 ATACA-ACAATATAAATATAT
*
66283667 ATACAACAATCTAAA
1 ATACAACAATATAAA
66283682 GTAAATAGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 1 0.03
20 18 0.62
21 9 0.31
22 1 0.03
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (20 bp):
ATACAACAATATAAATATAT
Found at i:66283789 original size:25 final size:26
Alignment explanation
Indices: 66283738--66283800 Score: 85
Period size: 25 Copynumber: 2.5 Consensus size: 26
66283728 AAAAGGTTCG
* *
66283738 AATAAACAATATACAAGAAAACTTAA
1 AATAAATAATATACAAGAAAAATTAA
66283764 AATAAATGAATATA-AA-AAAAATTAA
1 AATAAAT-AATATACAAGAAAAATTAA
66283789 AATAAATAATAT
1 AATAAATAATAT
66283801 TATATATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 5 0.15
25 15 0.44
26 8 0.24
27 6 0.18
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.24
Consensus pattern (26 bp):
AATAAATAATATACAAGAAAAATTAA
Found at i:66285211 original size:3 final size:3
Alignment explanation
Indices: 66285205--66285299 Score: 93
Period size: 3 Copynumber: 31.3 Consensus size: 3
66285195 TTTTGTTTAT
*
66285205 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA CTA TTA TTA TCT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA T-TA
* * * * * * *
66285251 TTA CTA TTA TTG TTA GTA TTA TTA CTA CTA TTA TTA TTA CTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
66285299 T
1 T
66285300 ATTTATACCC
Statistics
Matches: 75, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
2 1 0.01
3 70 0.93
4 4 0.05
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:66288993 original size:7 final size:6
Alignment explanation
Indices: 66288972--66289033 Score: 51
Period size: 6 Copynumber: 10.8 Consensus size: 6
66288962 CAGTGGGGGC
* * *
66288972 AAAAA- AAAAAG AAAAAG TAAAA- AAAATG AGAAAAT AAAAAG AAAAA-
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A-AAAAG AAAAAG AAAAAG
*
66289018 AAAAAC AAAAA- AAAAA
1 AAAAAG AAAAAG AAAAA
66289034 CCAAATAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
5 18 0.38
6 25 0.53
7 4 0.09
ACGTcount: A:0.85, C:0.02, G:0.08, T:0.05
Consensus pattern (6 bp):
AAAAAG
Found at i:66288997 original size:11 final size:10
Alignment explanation
Indices: 66288972--66289049 Score: 54
Period size: 11 Copynumber: 7.3 Consensus size: 10
66288962 CAGTGGGGGC
66288972 AAAAAAA-AA
1 AAAAAAAGAA
*
66288981 AGAAAAAGTAA
1 AAAAAAAG-AA
66288992 AAAAAATGAGAA
1 AAAAAA--AGAA
66289004 AATAAAAAGAA
1 AA-AAAAAGAA
66289015 AAAAAAA-ACA
1 AAAAAAAGA-A
66289025 AAAAAAA-AA
1 AAAAAAAGAA
66289034 CCAAATAAAAGAA
1 --AAA-AAAAGAA
66289047 AAA
1 AAA
66289050 CCTCTACTGG
Statistics
Matches: 57, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
9 8 0.14
10 14 0.25
11 19 0.33
12 8 0.14
13 8 0.14
ACGTcount: A:0.83, C:0.04, G:0.08, T:0.05
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:66289043 original size:16 final size:16
Alignment explanation
Indices: 66289003--66289051 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
66288993 AAAAATGAGA
**
66289003 AAATAAAAAGAAAAAAA
1 AAATAAAAA-AAAAACC
*
66289020 AAACAAAAAAAAAACC
1 AAATAAAAAAAAAACC
*
66289036 AAATAAAAGAAAAACC
1 AAATAAAAAAAAAACC
66289052 TCTACTGGAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
16 19 0.70
17 8 0.30
ACGTcount: A:0.82, C:0.10, G:0.04, T:0.04
Consensus pattern (16 bp):
AAATAAAAAAAAAACC
Found at i:66289501 original size:21 final size:21
Alignment explanation
Indices: 66289476--66289514 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
66289466 TACTTCACTA
66289476 AAAAAACG-AAAAGAAAAATG
1 AAAAAACGAAAAAGAAAAATG
*
66289496 AAAAAATGAAAAAGAAAAA
1 AAAAAACGAAAAAGAAAAA
66289515 AAAATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.79, C:0.03, G:0.13, T:0.05
Consensus pattern (21 bp):
AAAAAACGAAAAAGAAAAATG
Found at i:66289515 original size:16 final size:16
Alignment explanation
Indices: 66289496--66289530 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 16
66289486 AAGAAAAATG
66289496 AAAAAATGAAAAAGAAA
1 AAAAAAT-AAAAAGAAA
66289513 AAAAAATAAAAAGAAA
1 AAAAAATAAAAAGAAA
66289529 AA
1 AA
66289531 GGAGAGGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.06
Consensus pattern (16 bp):
AAAAAATAAAAAGAAA
Found at i:66290642 original size:87 final size:88
Alignment explanation
Indices: 66290540--66293622 Score: 1614
Period size: 88 Copynumber: 35.5 Consensus size: 88
66290530 AGTCATTAAA
*** * * * * * * *
66290540 GCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATATCAGATCCTATCTTCCTATA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
* *
66290604 TTGGTAG-GAAGTGGATCGAAGAT
66 TTGG-CGTGAAGTAGATCGAAGAT
* *** * * * * * * *
66290627 GCAGATCTTATCTTCATGTATT-G-CGTGAA-AAGATCGAAGATATCAGATCCTATCTTCCTATA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
* *
66290689 TTGGTAG-GAAGTGGATCGAAGAT
66 TTGG-CGTGAAGTAGATCGAAGAT
* *
66290712 GCAGATCTTGTCTT-CCATATTGGTGGCGAAGTAGATCGAAG-AAGCAGATCTTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
*
66290775 TCGGCGTGAAGTAGATCGAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
*
66290798 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
66290863 TTGGCGTGAAGTAGATCGAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
* * * * *
66290886 GCAGAT-TCTGCCTTCCTATATTGGTAG-GAAGTAGGTCGAAGAAAGCAGATCTTGTCTTCATGT
1 GCAGATCT-TGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGT
*
66290949 ATTGGCGTGAAGTAGATCAAAGAT
65 ATTGGCGTGAAGTAGATCGAAGAT
* * * * ** * * * * * *
66290973 --AGTTC-TATC-TCCC----GGGGCAAGAAGTAGATCGGAGATAGCTGATCCTATCTTCCTATA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
* * *
66291030 TTGGTAG-GAAATGGATCGAAGAT
66 TTGG-CGTGAAGTAGATCGAAGAT
* *
66291053 GCAGATCTTGTCTT-CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
66291117 TTGGCGTGAAGTAGATCGAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
* * * * * *
66291140 GCAGATTTTGCCTTCCTATATTGGTAG-GAAGTAGGTCGAAGAAAGCAGATCTTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
*
66291204 TTGGCGTGAAGTAGATCAAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
* * * * ** * * * * * *
66291227 --AGTTC-TATC-TCCC----GGGGCAAGAAGTAGATCGGAGATAGCTGATCCTATCTTCCTATA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
* * *
66291284 TTGGTAG-GAAATGGATCGAAGAT
66 TTGG-CGTGAAGTAGATCGAAGAT
* *
66291307 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
66291372 TTGGCGTGAAGTAGATCGAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
* * * * *
66291395 GCAGAT-TCTGCCTTCCTATATTGGTAG-GAAGTAGGTCGAAGAAAGCAGATCTTGTCTTCATGT
1 GCAGATCT-TGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGT
*
66291458 ATTGGCGTGAAGTAGATCAAAGAT
65 ATTGGCGTGAAGTAGATCGAAGAT
* * * * ** * * * * * *
66291482 --AGTTC-TATC-TCCC----GGGGCAAGAAGTAGATCGGAGATAGCTGATCCTATCTTCCTATA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
* * *
66291539 TTGGTAG-GAAATGGATCGAAGAT
66 TTGG-CGTGAAGTAGATCGAAGAT
*
66291562 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
66291627 TTGGCGTGAAGTAGATCGAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
* * * * * *
66291650 GCAGAT-TCTGCCTTCCTATATTGGTAG-GAAGTAGGTCGAAGAAAGCAGATCTTGTCTTCGTGT
1 GCAGATCT-TGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGT
*
66291713 ATTGGCGTGAAGTAGATCAAAGAT
65 ATTGGCGTGAAGTAGATCGAAGAT
* * * * ** * * * * * *
66291737 --AGTTC-TATC-TCCC----GGGGCAAGAAGTAGATCGGAGATAGCTGATCCTATCTTCCTATA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
* * *
66291794 TTGGTAG-GAAATGGATCGAAGAT
66 TTGG-CGTGAAGTAGATCGAAGAT
* *
66291817 GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
*
66291882 TTGGAGTGAAGTAGATCGAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
* * * * *
66291905 GCAGAT-TCTGCCTTCCTATATTGGTAG-GAAGTAGGTCGAAGAAAGCAGATCTTGTCTTCATGT
1 GCAGATCT-TGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGT
*
66291968 ATTGGCGTGAAGTAGATCAAAGAT
65 ATTGGCGTGAAGTAGATCGAAGAT
* * * * ** * * * * * *
66291992 --AGTTC-TATC-TCCC----GGGGCAAGAAGTAGATCGGAGATAGCTGATCCTATCTTCCTATA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
* * *
66292049 TTGGTAG-GAAATGGATCGAAGAT
66 TTGG-CGTGAAGTAGATCGAAGAT
* * ** ** *
66292072 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGAAGATTGCAGATCTTGCCTTCCTGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
* *
66292137 TTTGGCAGCGAAGTAGGTCGAAGAT
66 -TTGGC-GTGAAGTAGATCGAAGAT
* * ** * * * *
66292162 GGCGGAT-TT-TACCTCCC-TGACTACAGT-G-G-AGTACATTGAAGCCAA-TA-AT-TCTATCT
1 -GCAGATCTTGT-CTTCCCAT-A-T-TGGTCGCGAAGTAGATCGAAG-AAAGCAGATCT-TATCT
* * * *
66292218 CCCTGTATTTGGCAGTGGAA-TAGATTGAAAATT
59 TCATGTA-TTGGC-GT-GAAGTAGATCGAAGA-T
* ** * * ** * * * * *
66292251 GCAGATCTTGCCTTCCTGTATTTGG-CAGCGAAGCAGATCAAAGATGGCAAATTTTACCTCCCTG
1 GCAGATCTTGTCTTCCCATA-TTGGTC-GCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATG
*** * * *
66292315 -A-CCACAGTGGAGTACATTG-A-A-
64 TATTGGC-GTGAAGTAGATCGAAGAT
* * * * * * * ** **
66292336 GCCGATAATTCTATCTCCCTGTATTTGG-CAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTT
1 GCAGAT-CTTGTCT-TCCC-ATA-TTGGTC-G-CGAAGTAGATCGAAGAAAGCAGATCTTATCTT
* * *
66292399 CCTGTATTCGGCAGCGAAGTAGATCAAAGAT
60 CATGTATT-GGC-GTGAAGTAGATCGAAGAT
* ** ** *
66292430 GGCAGAT-TT-TACCTCCC-TGACTACAGT-G-G-AGT--A-C-ATTAAAGCCGATAACTCTATC
1 -GCAGATCTTGT-CTTCCCAT-A-T-TGGTCGCGAAGTAGATCGAAGAAAGCAGAT--CT-TATC
* *
66292485 TCTC-TGCATTTGGCAGTGGAATAGATTAAAGATCAAAGAT
58 T-TCATGTA-TTGGC-GT-G-A-AG--T--AGATCGAAGAT
*** * * * ** * * *
66292525 GGCAGAT-TT-TACTTCCC-TGACTACAT-G-GGAGTACATTGAAG-CCG-ATAACTCTATCTCC
1 -GCAGATCTTGT-CTTCCCAT-A-TTGGTCGCGAAGTAGATCGAAGAAAGCAGATCT-TATCTTC
* **
66292583 CTGTATTTGGCAGTGGAA-TAGATTAAAGATT
61 ATGTA-TTGGC-GT-GAAGTAGATCGAAGA-T
* * ** * * ** * * * *
66292614 GTAGATCTTGCCTTCCTGTATTTGG-CAGCAAAGCAGATCGAAGATGGCAGATTTTACCTCCCTG
1 GCAGATCTTGTCTTCCCATA-TTGGTC-GCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATG
* * * * *
66292678 -ATT-AC-AGAAGTGGATCGACGAC
64 TATTGGCGTGAAGTAGATCGAAGAT
* * *
66292700 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
66292765 TTGGCGTGAAGTAGATCGAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
* * * * * * * * * * * * ***
66292788 AGTAGGTCCTATTTTCCTATATTGATAG-GAAGTGGATCCAAG-ATGCAGATCTTGTCTTCCCAT
1 -GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGT
* * * *
66292851 ATTGGTGGCGAAGTAGATCGCAGAAA
65 ATTGG-CGTGAAGTAGATCGAAG-AT
*** * * * * * * * *
66292877 GCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGTAGGTCCTATTTTCCTATA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
** * *
66292941 TTGATAG-GAAGTGGATCCAAGAT
66 TTG-GCGTGAAGTAGATCGAAGAT
* * *
66292964 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
66293029 TTGGCGTGAAGTAGATCGAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
* * * * * * * * *
66293052 ATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTC-TCA
1 -GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCAT-G
* * * *
66293114 TATTGGTGGCGAAGTAGATCGCAGAAA
64 TATTGG-CGTGAAGTAGATCGAAG-AT
* * *
66293141 ACAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
66293206 TTGGCGTGAAGTAGATCGAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
* * * * * * * ***
66293229 ATCAGATCCTATCTTCCTATATTGGTAG-GAAGT-GAATCGAAG-ATGCAGATCTTGTCTTCCCA
1 -GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAG-ATCGAAGAAAGCAGATCTTATCTTCATG
* * * *
66293291 TATTGGTGGCGAAGTAGATCGCAGAAA
64 TATTGG-CGTGAAGTAGATCGAAG-AT
* *
66293318 ACAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
66293383 TTGGCGTGAAGTAGATCGAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
* * * * * * * ***
66293406 ATCAGATCCTATCTTCCTATATTGGTAG-GAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCCAT
1 -GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGT
* * *
66293469 ATTGGTG-GCAAAGTAGATCGCAGAAA
65 ATTGGCGTG--AAGTAGATCGAAG-AT
* * * * * *
66293495 ACAGATCTTGTCTTCTCATATTGGTGGCAAAGTAGATCGCAGAAAGCAGATCGTATCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
*
66293560 TTGGCGTGAAGTAGATCAAAGAT
66 TTGGCGTGAAGTAGATCGAAGAT
* * * * *
66293583 AGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGA
1 -GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGA
66293623 CGATGCATAT
Statistics
Matches: 2296, Mismatches: 530, Indels: 339
0.73 0.17 0.11
Matches are distributed among these distances:
79 10 0.00
80 230 0.10
81 5 0.00
82 20 0.01
83 32 0.01
84 31 0.01
85 127 0.06
86 87 0.04
87 540 0.24
88 696 0.30
89 268 0.12
90 96 0.04
91 44 0.02
92 30 0.01
93 9 0.00
94 5 0.00
95 62 0.03
97 2 0.00
98 1 0.00
99 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (88 bp):
GCAGATCTTGTCTTCCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
TTGGCGTGAAGTAGATCGAAGAT
Found at i:66290685 original size:85 final size:87
Alignment explanation
Indices: 66290540--66290891 Score: 349
Period size: 85 Copynumber: 4.1 Consensus size: 87
66290530 AGTCATTAAA
*
66290540 GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATATCAGATCCTATCTTCCTATAT
1 GCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCAAAGATATCAGATCCTATCTTCCTATAT
66290605 TGGTAGGAAGTGGATCGAAGAT
66 TGGTAGGAAGTGGATCGAAGAT
* *
66290627 GCAGATCTTATCTTCATGTATT-GCGTGAA-AAGATCGAAGATATCAGATCCTATCTTCCTATAT
1 GCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCAAAGATATCAGATCCTATCTTCCTATAT
66290690 TGGTAGGAAGTGGATCGAAGAT
66 TGGTAGGAAGTGGATCGAAGAT
* * * * * * * * *
66290712 GCAGATCTTGTCTTCCA--TATTGGTGGCGAAGTAGATCGAAGA-AGCAGATCTTGTCTTCATGT
1 GCAGATCTTGTCTT-CATGTATTGG-CGTGAAGAAGATCAAAGATATCAGATCCTATCTTCCTAT
* * *
66290774 ATCGG-CGTGAAGTAGATCGAAGAT
64 ATTGGTAG-GAAGTGGATCGAAGAT
*** * * * * * * * * *
66290798 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTA
1 GCAGATCTTGTCTTCATGTATTGG-CGTGAAGAAGATCAAAGATATCAGATCCTATCTTCCTATA
* *
66290863 TTGG-CGTGAAGTAGATCGAAGAT
65 TTGGTAG-GAAGTGGATCGAAGAT
66290886 GCAGAT
1 GCAGAT
66290892 TCTGCCTTCC
Statistics
Matches: 239, Mismatches: 18, Indels: 15
0.88 0.07 0.06
Matches are distributed among these distances:
84 4 0.02
85 70 0.29
86 61 0.26
87 56 0.23
88 48 0.20
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (87 bp):
GCAGATCTTGTCTTCATGTATTGGCGTGAAGAAGATCAAAGATATCAGATCCTATCTTCCTATAT
TGGTAGGAAGTGGATCGAAGAT
Done.