Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 226 of 230
Found at i:67011009 original size:21 final size:21
Alignment explanation
Indices: 67010966--67011024 Score: 70
Period size: 19 Copynumber: 3.0 Consensus size: 21
67010956 TCATGTATTG
* *
67010966 AAAATTTCCGTGTTTTC--AA
1 AAAAATTCTGTGTTTTCAAAA
67010985 AAAAATTCTGTGTTTTCAAAA
1 AAAAATTCTGTGTTTTCAAAA
*
67011006 AAAAATTTTGTG-TTTCAAA
1 AAAAATTCTGTGTTTTCAAA
67011025 GATTTTCGTG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
19 15 0.43
20 7 0.20
21 13 0.37
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (21 bp):
AAAAATTCTGTGTTTTCAAAA
Found at i:67011058 original size:21 final size:19
Alignment explanation
Indices: 67010975--67011063 Score: 78
Period size: 21 Copynumber: 4.6 Consensus size: 19
67010965 GAAAATTTCC
*
67010975 GTGTTTTCAAAAAAATTCT
1 GTGTTTTCAAAAAAATTTT
67010994 GTGTTTTCAAAAAAAAATTTT
1 GTGTTTTC--AAAAAAATTTT
*
67011015 GTG-TTTC--AAAGATTTT
1 GTGTTTTCAAAAAAATTTT
*
67011031 CGTGTTTTCAAAAATTATTATT
1 -GTGTTTTCAAAAA-AATT-TT
67011053 GTG-TTTCAAAA
1 GTGTTTTCAAAA
67011064 TTCTCGTGTT
Statistics
Matches: 59, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
16 8 0.14
17 3 0.05
18 4 0.07
19 8 0.14
20 15 0.25
21 19 0.32
22 2 0.03
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.45
Consensus pattern (19 bp):
GTGTTTTCAAAAAAATTTT
Found at i:67011071 original size:37 final size:37
Alignment explanation
Indices: 67010986--67011074 Score: 119
Period size: 37 Copynumber: 2.4 Consensus size: 37
67010976 TGTTTTCAAA
67010986 AAAATTCT-GTGTTTTCAAAAAAAAATTTTGTGTTTC
1 AAAATTCTCGTGTTTTCAAAAAAAAATTTTGTGTTTC
* **
67011022 AAAGATTTTCGTGTTTTC-AAAAATTATTATTGTGTTTC
1 AAA-ATTCTCGTGTTTTCAAAAAAAAATT-TTGTGTTTC
67011060 AAAATTCTCGTGTTT
1 AAAATTCTCGTGTTT
67011075 AAAAACAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
36 3 0.07
37 23 0.50
38 20 0.43
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.47
Consensus pattern (37 bp):
AAAATTCTCGTGTTTTCAAAAAAAAATTTTGTGTTTC
Found at i:67016442 original size:5 final size:5
Alignment explanation
Indices: 67016424--67016480 Score: 84
Period size: 5 Copynumber: 11.8 Consensus size: 5
67016414 TATTATGCCT
67016424 AAAA- AAAAC AAAA- ACAAA- AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC
1 AAAAC AAAAC AAAAC A-AAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC
67016472 AAAAC AAAA
1 AAAAC AAAA
67016481 AAAGAAAAAG
Statistics
Matches: 50, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
4 8 0.16
5 42 0.84
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:67016444 original size:15 final size:15
Alignment explanation
Indices: 67016424--67016495 Score: 80
Period size: 15 Copynumber: 4.9 Consensus size: 15
67016414 TATTATGCCT
67016424 AAAAAAAACAAAAAC
1 AAAAAAAACAAAAAC
67016439 -AAAAAAAC-AAAAC
1 AAAAAAAACAAAAAC
67016452 AAAACAAAAC-AAAAC
1 AAAA-AAAACAAAAAC
67016467 AAAACAAAACAAAAA-
1 AAAA-AAAACAAAAAC
* *
67016482 AAGAAAAAGAAAAA
1 AAAAAAAACAAAAA
67016496 AATCAAGATG
Statistics
Matches: 52, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
13 5 0.10
14 20 0.38
15 23 0.44
16 4 0.08
ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00
Consensus pattern (15 bp):
AAAAAAAACAAAAAC
Found at i:67017691 original size:81 final size:81
Alignment explanation
Indices: 67017359--67018720 Score: 1966
Period size: 82 Copynumber: 16.9 Consensus size: 81
67017349 TATTTTTCAC
* * * *
67017359 TTTCTGTTTTTTTTCAAATATCAACTCATAATACCAGAGGTGAGTTGAGCCTCGGGT--CACGCT
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCT
67017422 GAGGTA-TTTTTT-AA
66 GAGGTATTTTTTTAAA
* * *
67017436 TTTCGGTCTTTTTTT--TAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
1 TTTCTGT-TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGC
67017499 TGAGGTATTTTTTTTAAA
65 TGAGGTA-TTTTTTTAAA
*
67017517 TTTCTGCTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
1 TTTCTG-TTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGC
67017582 TGAGGTATTTTTTTAAA
65 TGAGGTATTTTTTTAAA
**
67017599 TTTCTGTTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCATAC
1 TTTCTG-TTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGC
*
67017664 CGAGGTA-TTTTTTAAA
65 TGAGGTATTTTTTTAAA
* *
67017680 TTTCTG-TTTTTTTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT--CATGCT
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCT
67017742 GAGGTATTTTTTTAAAA
66 GAGGTATTTTTTT-AAA
67017759 TTTCTGTTTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACG
1 TTTCTG--TTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACG
67017824 CTGAGGTATTTTTTTTTAAA
64 CTGAGGTA--TTTTTTTAAA
* * *
67017844 TTTCTGTTTTTTTTTCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTTGGGTCGCACGC
1 TTTCTG-TTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGC
67017909 TGAGGTATTTTTTTAAA
65 TGAGGTATTTTTTTAAA
*
67017926 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCT
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCT
67017991 GAGGTA-TTTTTT-AA
66 GAGGTATTTTTTTAAA
* *
67018005 TTTCGGTCTTTTTTT---AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
1 TTTCTGT-TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGC
67018067 TGAGGTATTTTTTTAAAA
65 TGAGGTATTTTTTT-AAA
* * *
67018085 TTTC--TATTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCGCACGCT
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCT
67018148 GAGGTATTTTTTTTAAA
66 GAGGTA-TTTTTTTAAA
* ** *
67018165 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATACC
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCT
67018230 GAGGTATTTTTTTTAAA
66 GAGGTA-TTTTTTTAAA
*
67018247 TTTATGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT--CACGCT
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCT
67018310 GAGGTATTTTTTTTTAAA
66 GAGGTA--TTTTTTTAAA
* * *
67018328 TTTCTGTTTTTCTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGCGTCGCATGCT
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCT
67018393 GAGGTATTTTTTTAAA
66 GAGGTATTTTTTTAAA
*
67018409 TTTCTGTTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
1 TTTCTG-TTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGC
67018474 TGAGGTATTTTTTTAAA
65 TGAGGTATTTTTTTAAA
*
67018491 TTTCTGTTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
1 TTTCTG-TTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGC
67018556 TGAGGTATTTTTTTAAA
65 TGAGGTATTTTTTTAAA
* * *
67018573 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACATG-T
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCT
67018637 CGAGGTA-TTTTTT--A
66 -GAGGTATTTTTTTAAA
* * * * * * * * *
67018651 -TT-T-TTGTTTTTCGAAGATCAACTCATAATCCAAAAGGTGAGTTGAGTCTCGGGTCGCACGCC
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCT
*
67018713 GAGCTATT
66 GAGGTATT
67018721 CTCGATTTCT
Statistics
Matches: 1187, Mismatches: 63, Indels: 71
0.90 0.05 0.05
Matches are distributed among these distances:
75 51 0.04
76 37 0.03
77 78 0.07
78 33 0.03
79 66 0.06
80 101 0.09
81 239 0.20
82 427 0.36
83 65 0.05
84 74 0.06
85 9 0.01
86 7 0.01
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (81 bp):
TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCT
GAGGTATTTTTTTAAA
Found at i:67018644 original size:245 final size:244
Alignment explanation
Indices: 67017359--67018720 Score: 1988
Period size: 245 Copynumber: 5.6 Consensus size: 244
67017349 TATTTTTCAC
* * * * *
67017359 TTTCTGTTTTTTTTCAAATATCAACTCATAATACCAGAGGTGAGTTGAGCCTCGGGT--CACGCT
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCATGCT
* *
67017422 GAGGTA-TTTTTT-AATTTCGGTCTTTTTTT--TAAATCAACTCATATTGCGAGAAGTGAGTTGA
66 GAGGTATTTTTTTAAATTTCTGT-TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
*
67017483 GCCTCGGGTCGCACGCTGAGGTATTTTTTTTAAATTTCTGCTTTTTTTTCAAAAATCAACTCATA
130 GCCTCGGGTCGCACGCTGAGGTA-TTTTTTTAAATTTCTGTTTTTTTTTCAAAAATCAACTCATA
67017548 TTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTTTTTAAA
194 TTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTTTTTAAA
*
67017599 TTTCTGTTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCATAC
1 TTTCTG-TTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCATGC
* * *
67017664 CGAGGTA-TTTTTTAAATTTCTG-TTTTTTTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGA
65 TGAGGTATTTTTTTAAATTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
*
67017727 GCCTCGGGT--CATGCTGAGGTATTTTTTTAAAATTTCTGTTTTTTTTTTCAAAAATCAACTCAT
130 GCCTCGGGTCGCACGCTGAGGTATTTTTTT-AAATTTCTG-TTTTTTTTTCAAAAATCAACTCAT
*
67017790 ATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTTTTTTTAAA
193 ATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTA--TTTTTTTAAA
* * * *
67017844 TTTCTGTTTTTTTTTCAAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTTGGGTCGCACGC
1 TTTCTG-TTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCATGC
67017909 TGAGGTATTTTTTTAAATTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
65 TGAGGTATTTTTTTAAATTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
* *
67017974 GCCTCGGGTCGCACGCTGAGGTA-TTTTTT-AATTTCGGTCTTTTTTT---AAATCAACTCATAT
130 GCCTCGGGTCGCACGCTGAGGTATTTTTTTAAATTTCTGTTTTTTTTTCAAAAATCAACTCATAT
67018034 TGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTTTTTAAAA
195 TGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTTTTT-AAA
* * * *
67018085 TTTC--TATTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCGCACGCT
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCATGCT
*
67018148 GAGGTATTTTTTTTAAATTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
66 GAGGTA-TTTTTTTAAATTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
* ** * *
67018213 GCCTCGGGTCACATACCGAGGTATTTTTTTTAAATTTATG-TTTTTTTTCAAAAATCAACTCATA
130 GCCTCGGGTCGCACGCTGAGGTA-TTTTTTTAAATTTCTGTTTTTTTTTCAAAAATCAACTCATA
*
67018277 TTGCGAGAGGTGAGTTGAGCCTCGGGT--CACGCTGAGGTATTTTTTTTTAAA
194 TTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTA--TTTTTTTAAA
* *
67018328 TTTCTGTTTTTCTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGCGTCGCATGCT
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCATGCT
67018393 GAGGTATTTTTTTAAATTTCTGTTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
66 GAGGTATTTTTTTAAATTTCTG-TTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
67018458 GCCTCGGGTCGCACGCTGAGGTATTTTTTTAAATTTCTGTTTTTTTTTCAAAAATCAACTCATAT
130 GCCTCGGGTCGCACGCTGAGGTATTTTTTTAAATTTCTGTTTTTTTTTCAAAAATCAACTCATAT
67018523 TGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTTTTTAAA
195 TGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTTTTTAAA
* *
67018573 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACATG-T
1 TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCATGCT
* * * * * *
67018637 CGAGGTA-TTTTTT--A-TT-T-TTGTTTTTCGAAGATCAACTCATAAT-CCAAAAGGTGAGTTG
66 -GAGGTATTTTTTTAAATTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAA-GTGAGTTG
* * *
67018695 AGTCTCGGGTCGCACGCCGAGCTATT
129 AGCCTCGGGTCGCACGCTGAGGTATT
67018721 CTCGATTTCT
Statistics
Matches: 1025, Mismatches: 65, Indels: 66
0.89 0.06 0.06
Matches are distributed among these distances:
237 4 0.00
238 114 0.11
239 76 0.07
240 14 0.01
241 76 0.07
242 99 0.10
243 86 0.08
244 129 0.13
245 328 0.32
246 22 0.02
247 60 0.06
248 6 0.01
249 11 0.01
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (244 bp):
TTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCATGCT
GAGGTATTTTTTTAAATTTCTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
CCTCGGGTCGCACGCTGAGGTATTTTTTTAAATTTCTGTTTTTTTTTCAAAAATCAACTCATATT
GCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTTTTTAAA
Found at i:67018734 original size:75 final size:75
Alignment explanation
Indices: 67018501--67018740 Score: 176
Period size: 75 Copynumber: 3.1 Consensus size: 75
67018491 TTTCTGTTTT
* * * * * * *
67018501 TTTTTCAAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATT
1 TTTTTCAAAAATCAACTCATAAT-CCAAAAGGTGAGTTGAGCCTCGGGGCACACGCCGAGCTA--
* **
67018565 TTTTTAAATTTCTG
63 -TTCTCGATTTCTG
* * * * * * *
67018579 TTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACATGTCGAGGTA
1 ---TTTTTCAAAAATCAACTCATAATCCAAAAGGTGAGTTGAGCCTCGGGGCACACGCCGAGCTA
* ** *
67018644 TTTTTTATTTTTG
63 TTCTCGATTTCTG
* * * * *
67018657 TTTTTCGAAGATCAACTCATAATCCAAAAGGTGAGTTGAGTCTCGGGTCGCACGCCGAGCTATTC
1 TTTTTCAAAAATCAACTCATAATCCAAAAGGTGAGTTGAGCCTCGGGGCACACGCCGAGCTATTC
67018722 TCGATTTCTG
66 TCGATTTCTG
67018732 TTTTTCAAA
1 TTTTTCAAA
67018741 TAAAAAGAAA
Statistics
Matches: 128, Mismatches: 30, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
75 67 0.52
78 10 0.08
80 1 0.01
81 50 0.39
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (75 bp):
TTTTTCAAAAATCAACTCATAATCCAAAAGGTGAGTTGAGCCTCGGGGCACACGCCGAGCTATTC
TCGATTTCTG
Found at i:67018965 original size:30 final size:29
Alignment explanation
Indices: 67018931--67019012 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 29
67018921 TTTTGACCCC
67018931 AAACTTTTCTAAAATTACATTTGAACCCTT
1 AAAC-TTTCTAAAATTACATTTGAACCCTT
* *
67018961 AAACTTTCTCAAAATTTCATTTTAACCCTT
1 AAACTTTCT-AAAATTACATTTGAACCCTT
*
67018991 AAACTTTCAAGAAATTACATTT
1 AAACTTTCTA-AAATTACATTT
67019013 TGGCCCATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
29 6 0.13
30 40 0.87
ACGTcount: A:0.38, C:0.20, G:0.02, T:0.40
Consensus pattern (29 bp):
AAACTTTCTAAAATTACATTTGAACCCTT
Found at i:67019486 original size:14 final size:15
Alignment explanation
Indices: 67019458--67019486 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67019448 CAATCAAATA
67019458 AAGAAAAGAGAAGAG
1 AAGAAAAGAGAAGAG
67019473 AAGAAAAG-GAAGAG
1 AAGAAAAGAGAAGAG
67019487 GGGAAGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (15 bp):
AAGAAAAGAGAAGAG
Found at i:67019606 original size:29 final size:27
Alignment explanation
Indices: 67019582--67019634 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
67019572 GAAGAAGAGG
*
67019582 AAGAGAAAGAAAGGAAAAAAGAGAAGAAA
1 AAGAAAAAGAAA--AAAAAAGAGAAGAAA
67019611 AAGAAAAAGAAAAAAAAAGA-AAGA
1 AAGAAAAAGAAAAAAAAAGAGAAGA
67019635 CAGCAGGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 4 0.17
27 8 0.35
29 11 0.48
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (27 bp):
AAGAAAAAGAAAAAAAAAGAGAAGAAA
Found at i:67019608 original size:23 final size:25
Alignment explanation
Indices: 67019576--67019625 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
67019566 CGGCCCGAAG
* *
67019576 AAGAGGAAGAGAAAG-AAAGGAAAA
1 AAGAGGAAGAAAAAGAAAAAGAAAA
67019600 AAGA-GAAGAAAAAGAAAAAGAAAA
1 AAGAGGAAGAAAAAGAAAAAGAAAA
67019624 AA
1 AA
67019626 AAAGAAAGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (25 bp):
AAGAGGAAGAAAAAGAAAAAGAAAA
Found at i:67019627 original size:16 final size:17
Alignment explanation
Indices: 67019582--67019632 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 17
67019572 GAAGAAGAGG
* *
67019582 AAGAGAAAGAAAGGAAAA
1 AAGAGAAAAAAAAG-AAA
*
67019600 AAGAGAAGAAAAAGAAA
1 AAGAGAAAAAAAAGAAA
67019617 AAGA-AAAAAAAAGAAA
1 AAGAGAAAAAAAAGAAA
67019633 GACAGCAGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 11 0.38
17 7 0.24
18 11 0.38
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (17 bp):
AAGAGAAAAAAAAGAAA
Found at i:67020195 original size:20 final size:20
Alignment explanation
Indices: 67020170--67020207 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67020160 AAAAATATTC
67020170 AAAAATCCTCGTATTTTAAT
1 AAAAATCCTCGTATTTTAAT
* *
67020190 AAAAATTCTCGTGTTTTA
1 AAAAATCCTCGTATTTTA
67020208 TTAGAATCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (20 bp):
AAAAATCCTCGTATTTTAAT
Found at i:67020354 original size:17 final size:17
Alignment explanation
Indices: 67020327--67020372 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
67020317 AAAAAAACCG
67020327 TGTTTCAAAAATTT-TCA
1 TGTTTC-AAAATTTCTCA
*
67020344 TGTCTTCAAAATTTCTCC
1 TGT-TTCAAAATTTCTCA
67020362 TGTTTCAAAAT
1 TGTTTCAAAAT
67020373 AATAATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.30, C:0.17, G:0.07, T:0.46
Consensus pattern (17 bp):
TGTTTCAAAATTTCTCA
Found at i:67020453 original size:17 final size:16
Alignment explanation
Indices: 67020420--67020507 Score: 59
Period size: 17 Copynumber: 5.2 Consensus size: 16
67020410 TTCCTGTTTT
*
67020420 TTTAAAAATTTTCCGTG
1 TTTAAAAAATTT-CGTG
*
67020437 TTTCAAAAATTCTCGTG
1 TTTAAAAAATT-TCGTG
* * *
67020454 AATAAAAAAAATTCGTG
1 -TTTAAAAAATTTCGTG
** *
67020471 TTTTCAAAATTCCCGTG
1 TTTAAAAAATT-TCGTG
67020488 TTTGAAAAAATTTCGTG
1 TTT-AAAAAATTTCGTG
67020505 TTT
1 TTT
67020508 TCGGGTTTTC
Statistics
Matches: 52, Mismatches: 15, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
16 6 0.12
17 32 0.62
18 14 0.27
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (16 bp):
TTTAAAAAATTTCGTG
Found at i:67020508 original size:34 final size:35
Alignment explanation
Indices: 67020423--67020509 Score: 97
Period size: 34 Copynumber: 2.5 Consensus size: 35
67020413 CTGTTTTTTT
* *
67020423 AAAAATTTTCCGTG-TTTCAAAAATTCTCGTGAATA
1 AAAAAATTT-CGTGTTTTCAAAAATTCCCGTGAATA
* ** *
67020458 AAAAAAATTCGTGTTTTC-AAAATTCCCGTGTTTG
1 AAAAAATTTCGTGTTTTCAAAAATTCCCGTGAATA
67020492 AAAAAATTTCGTGTTTTC
1 AAAAAATTTCGTGTTTTC
67020510 GGGTTTTCAA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
34 33 0.75
35 11 0.25
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (35 bp):
AAAAAATTTCGTGTTTTCAAAAATTCCCGTGAATA
Found at i:67020601 original size:36 final size:36
Alignment explanation
Indices: 67020554--67020639 Score: 145
Period size: 36 Copynumber: 2.4 Consensus size: 36
67020544 TTGGATGTTA
* *
67020554 TCGTGTTTTCAAAAAATTCCCGTGTTTGACAAATTT
1 TCGTGTTTTCAAAAAATTCCCGTGTTTCAAAAATTT
*
67020590 TCGTGTTTTCAAAAAATTCTCGTGTTTCAAAAATTT
1 TCGTGTTTTCAAAAAATTCCCGTGTTTCAAAAATTT
67020626 TCGTGTTTTCAAAA
1 TCGTGTTTTCAAAA
67020640 TTTTCATGTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.43
Consensus pattern (36 bp):
TCGTGTTTTCAAAAAATTCCCGTGTTTCAAAAATTT
Found at i:67020619 original size:18 final size:19
Alignment explanation
Indices: 67020554--67020874 Score: 157
Period size: 17 Copynumber: 17.4 Consensus size: 19
67020544 TTGGATGTTA
67020554 TCGTGTTTTCAAAAAATTC
1 TCGTGTTTTCAAAAAATTC
* * * *
67020573 CCGTG-TTT-GACAAATTT
1 TCGTGTTTTCAAAAAATTC
67020590 TCGTGTTTTCAAAAAATTC
1 TCGTGTTTTCAAAAAATTC
*
67020609 TCGTG-TTTC-AAAAATTT
1 TCGTGTTTTCAAAAAATTC
* *
67020626 TCGTGTTTTCAAAATTTTCATGTTT
1 TCGTGTTTTCAAAA-----A-ATTC
67020651 TCGTGTTTTCAAAAAATTC
1 TCGTGTTTTCAAAAAATTC
* *
67020670 TCGTGTTTTTAAAAAAAAAT-
1 TCGTG-TTTT-CAAAAAATTC
*
67020690 TCGTG-TTTAAAAAAATT-
1 TCGTGTTTTCAAAAAATTC
* *
67020707 TCATGTTTTC--AAAATTT
1 TCGTGTTTTCAAAAAATTC
* *
67020724 TCGTGTTTTC-AAAATTTT
1 TCGTGTTTTCAAAAAATTC
67020742 TCGTG---TCAAAAAAATTC
1 TCGTGTTTTC-AAAAAATTC
* * * *
67020759 TCATGTATT-GAAAATTTC
1 TCGTGTTTTCAAAAAATTC
67020777 -CGTGTTTTCAAAAAAATTC
1 TCGTGTTTTC-AAAAAATTC
*
67020796 T-GTGTTTTCAAAAAAAAT-
1 TCGTGTTTTC-AAAAAATTC
* *
67020814 T-GTG-TTTC-AAAGATTT
1 TCGTGTTTTCAAAAAATTC
*
67020830 TCGTGTTTTCAAAAATTATTA
1 TCGTGTTTTCAAAAA--ATTC
*
67020851 TTGTG-TTTC--AAAATTC
1 TCGTGTTTTCAAAAAATTC
67020867 TCGTGTTT
1 TCGTGTTT
67020875 AAAAACAAAA
Statistics
Matches: 236, Mismatches: 36, Indels: 62
0.71 0.11 0.19
Matches are distributed among these distances:
15 7 0.03
16 14 0.06
17 68 0.29
18 49 0.21
19 51 0.22
20 15 0.06
21 14 0.06
24 1 0.00
25 17 0.07
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (19 bp):
TCGTGTTTTCAAAAAATTC
Found at i:67020697 original size:81 final size:80
Alignment explanation
Indices: 67020584--67020733 Score: 212
Period size: 81 Copynumber: 1.9 Consensus size: 80
67020574 CGTGTTTGAC
* * * * * *
67020584 AAATTTTCGTGTTTTCAAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAATTTTCATGT
1 AAATTCTCGTGTTTTAAAAAAAATCTCGTGTTTAAAAAAATTTCATGTTTTCAAAATTTTCATGT
67020649 TTTCGTGTTTTCAAA
66 TTTCGTGTTTTCAAA
*
67020664 AAATTCTCGTGTTTTTAAAAAAAAAT-TCGTGTTTAAAAAAATTTCATGTTTTCAAAATTTTCGT
1 AAATTCTCGTG-TTTT-AAAAAAAATCTCGTGTTTAAAAAAATTTCATGTTTTCAAAATTTTCAT
67020728 GTTTTC
64 GTTTTC
67020734 AAAATTTTTC
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
80 10 0.16
81 44 0.72
82 7 0.11
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47
Consensus pattern (80 bp):
AAATTCTCGTGTTTTAAAAAAAATCTCGTGTTTAAAAAAATTTCATGTTTTCAAAATTTTCATGT
TTTCGTGTTTTCAAA
Found at i:67020763 original size:52 final size:52
Alignment explanation
Indices: 67020689--67020843 Score: 154
Period size: 52 Copynumber: 2.9 Consensus size: 52
67020679 TAAAAAAAAA
* * *
67020689 TTCGTGTTTAAAAAAATTTCATGTTTTCAAAATTTTCGTGTTTTCAAAATTT
1 TTCGTGTTCAAAAAAATTTCATGTATTCAAAATTTCCGTGTTTTCAAAATTT
* ***
67020741 TTCGTG-TCAAAAAAATTCTCATGTATTGAAAATTTCCGTGTTTTCAAAAAAA
1 TTCGTGTTCAAAAAAATT-TCATGTATTCAAAATTTCCGTGTTTTCAAAATTT
* * *
67020793 TTCTGTGTTTTCAAAAAAAATT-GTGT-TTCAAAGATTTTCGTGTTTTCAAAA
1 TTC-GTG--TTCAAAAAAATTTCATGTATTCAAA-ATTTCCGTGTTTTCAAAA
67020844 ATTATTATTG
Statistics
Matches: 86, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
51 10 0.12
52 37 0.43
53 8 0.09
54 20 0.23
55 1 0.01
56 10 0.12
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.44
Consensus pattern (52 bp):
TTCGTGTTCAAAAAAATTTCATGTATTCAAAATTTCCGTGTTTTCAAAATTT
Found at i:67020838 original size:35 final size:36
Alignment explanation
Indices: 67020789--67020874 Score: 115
Period size: 35 Copynumber: 2.4 Consensus size: 36
67020779 TGTTTTCAAA
67020789 AAAATTCT-GTGTTTTCAAAAA-A-AATTGTGTTTC
1 AAAATTCTCGTGTTTTCAAAAATATAATTGTGTTTC
* *
67020822 AAAGATTTTCGTGTTTTCAAAAATTATTATTGTGTTTC
1 AAA-ATTCTCGTGTTTTCAAAAA-TATAATTGTGTTTC
67020860 AAAATTCTCGTGTTT
1 AAAATTCTCGTGTTT
67020875 AAAAACAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
33 3 0.07
34 4 0.09
35 13 0.29
37 12 0.27
38 13 0.29
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.47
Consensus pattern (36 bp):
AAAATTCTCGTGTTTTCAAAAATATAATTGTGTTTC
Found at i:67021482 original size:15 final size:15
Alignment explanation
Indices: 67021462--67021492 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67021452 AACCACCAAT
67021462 CGAAACAACTTAATG
1 CGAAACAACTTAATG
67021477 CGAAACAACTTAATG
1 CGAAACAACTTAATG
67021492 C
1 C
67021493 AGTATAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.23, G:0.13, T:0.19
Consensus pattern (15 bp):
CGAAACAACTTAATG
Found at i:67022451 original size:12 final size:12
Alignment explanation
Indices: 67022434--67022458 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67022424 CGGCACCGTG
67022434 TCTTTGTTACAC
1 TCTTTGTTACAC
67022446 TCTTTGTTACAC
1 TCTTTGTTACAC
67022458 T
1 T
67022459 TAAAGGAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.08, T:0.52
Consensus pattern (12 bp):
TCTTTGTTACAC
Found at i:67022858 original size:7 final size:7
Alignment explanation
Indices: 67022846--67022876 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
67022836 TTTGGGATTT
67022846 AACCCTA
1 AACCCTA
67022853 AACCCTA
1 AACCCTA
67022860 AACCACTA
1 AACC-CTA
67022868 AACCCTA
1 AACCCTA
67022875 AA
1 AA
67022877 ATCTTAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.13
Consensus pattern (7 bp):
AACCCTA
Found at i:67022870 original size:15 final size:14
Alignment explanation
Indices: 67022846--67022876 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
67022836 TTTGGGATTT
67022846 AACCCTAAACCCTA
1 AACCCTAAACCCTA
67022860 AACCACTAAACCCTA
1 AACC-CTAAACCCTA
67022875 AA
1 AA
67022877 ATCTTAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.13
Consensus pattern (14 bp):
AACCCTAAACCCTA
Found at i:67023338 original size:14 final size:14
Alignment explanation
Indices: 67023319--67023373 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
67023309 TAAAGTAGCA
*
67023319 TAAACCCCAAACCT
1 TAAACCCTAAACCT
* *
67023333 TAAACCTTAAACCC
1 TAAACCCTAAACCT
*
67023347 CAAACTCCTAAACCT
1 TAAAC-CCTAAACCT
*
67023362 TAAACCCAAAAC
1 TAAACCCTAAAC
67023374 ACCAAAACCT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
14 21 0.66
15 11 0.34
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.16
Consensus pattern (14 bp):
TAAACCCTAAACCT
Found at i:67023361 original size:22 final size:21
Alignment explanation
Indices: 67023319--67023383 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 21
67023309 TAAAGTAGCA
*
67023319 TAAACCCCAAACCTTAAACCT
1 TAAACCCCAAACCCTAAACCT
67023340 TAAACCCCAAACTCCTAAACCT
1 TAAACCCCAAAC-CCTAAACCT
* *
67023362 TAAACCCAAAACACCAAAACCT
1 TAAACCCCAAAC-CCTAAACCT
67023384 ACATCATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
21 12 0.31
22 27 0.69
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.15
Consensus pattern (21 bp):
TAAACCCCAAACCCTAAACCT
Found at i:67023964 original size:115 final size:115
Alignment explanation
Indices: 67023725--67024017 Score: 281
Period size: 115 Copynumber: 2.6 Consensus size: 115
67023715 GTTTTTAACA
* * * * *
67023725 AAGCGCCACTAATTTTAGTATAAATCAAGACCAAAATGTTGCGTTTTGG-TTATGGTATTTTGCG
1 AAGCGCCACTAATTCTAGTATACATCAAGAACAAAACGTTGCGTTTTGGTTTA-GATATTTTGCG
* * * * *
67023789 GCGCTAGACACAAATCACCGCTAATACTATGCTTTAGCGGCGTTTCACCGT
65 GCGCTAGACAAAAAGCACCGCAAATACTATCCGTTAGCGGCGTTTCACCGT
* * * *
67023840 AATCACCACTAAATCAAGTATACATCAAGAACAAAACGTTGCGTTTTGGTTTAGATATTTTGCGG
1 AAGCGCCACTAATTCTAGTATACATCAAGAACAAAACGTTGCGTTTTGGTTTAGATATTTTGCGG
** * ****
67023905 CGCT-TCCAAAAAGCGA-CGCAAATACTATCCGTTAGTGGCGTTTTTGTGAT
66 CGCTAGACAAAAAGC-ACCGCAAATACTATCCGTTAGCGGCGTTTCACCG-T
* * * * *
67023955 AAGCGCCACTAATTCTTA-CATACCTCAAG-ACCAAACTTTGCGTTTTGGTTAAGATATTTTGCG
1 AAGCGCCACTAATTC-TAGTATACATCAAGAACAAAACGTTGCGTTTTGGTTTAGATATTTTGCG
67024018 TGCTTTAACG
Statistics
Matches: 144, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
114 61 0.42
115 79 0.55
116 4 0.03
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (115 bp):
AAGCGCCACTAATTCTAGTATACATCAAGAACAAAACGTTGCGTTTTGGTTTAGATATTTTGCGG
CGCTAGACAAAAAGCACCGCAAATACTATCCGTTAGCGGCGTTTCACCGT
Found at i:67024196 original size:198 final size:199
Alignment explanation
Indices: 67023856--67024220 Score: 497
Period size: 198 Copynumber: 1.8 Consensus size: 199
67023846 CACTAAATCA
* *
67023856 AGTATACATCAAGAACAAAACGTTGCGTTTTGGTTTAGATATTTTGCGGCGCTTCCAAAAAGCGA
1 AGTATACATCAAGAACAAAACGTTGCGTTTTGGTTAAGATATTTTGCAGCGCTTCCAAAAAGCGA
* * * ** *
67023921 CGCAAATACTATCCGTTAGTGGCGTTTTTGTGATAAGCGCCACTAATTCTTACATACCTCAAGAC
66 CGCAAATAATATCCGTTAGCGGCGGTTTACTGATAAGCGCCACTAATTCTTACATACATCAAGAC
*
67023986 CAAACTTTGCGTTTTGGTTAAGATATTTTGC-GTGCTTTAACGGTGTTTCCCTAAGCGCCATTAA
131 CAAACGTTGCGTTTTGGTTAAGATATTTTGCGGTGCTTTAACGGTGTTTCCCTAAGCGCCATTAA
67024050 TTCT
196 TTCT
*
67024054 AGTATACATCAAG-ACAAAAAC-TATGCGTTTTGGTTAAGATATTTTGCAGCGCTTCTCACAAAG
1 AGTATACATCAAGAAC-AAAACGT-TGCGTTTTGGTTAAGATATTTTGCAGCGCTTC-CAAAAAG
* ** * * * * *
67024117 CGCCGTTATTAATATTCTTTCGCGGCGGTTTACTG-TAAGCGCCACTAATT-TTATATACATCAA
63 CGACGCAAATAATATCCGTTAGCGGCGGTTTACTGATAAGCGCCACTAATTCTTACATACATCAA
67024180 GACCAAAACGTTGCGTTTTGGTTAAGATATTTTGCGGTGCT
128 GACC-AAACGTTGCGTTTTGGTTAAGATATTTTGCGGTGCT
67024221 AGCCACGAAT
Statistics
Matches: 144, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
197 18 0.12
198 92 0.64
199 34 0.24
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (199 bp):
AGTATACATCAAGAACAAAACGTTGCGTTTTGGTTAAGATATTTTGCAGCGCTTCCAAAAAGCGA
CGCAAATAATATCCGTTAGCGGCGGTTTACTGATAAGCGCCACTAATTCTTACATACATCAAGAC
CAAACGTTGCGTTTTGGTTAAGATATTTTGCGGTGCTTTAACGGTGTTTCCCTAAGCGCCATTAA
TTCT
Found at i:67024462 original size:113 final size:114
Alignment explanation
Indices: 67024031--67024670 Score: 625
Period size: 114 Copynumber: 5.6 Consensus size: 114
67024021 TTTAACGGTG
* *
67024031 TTTCCC-TAAGCGCCATTAATTCTAGTATACATCAAGACAAAAACTATGCGTTTTGGTTAAGATA
1 TTTCCCGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATA
* * * * * * *
67024095 TTTTGCAGCGCTTCTCACAAAGCGCCGTTATTAATATTCTTTCGCGGCGG
66 TTTTGCGGCGCTTC-CACAAAGCGCCGCTATTACTGTCCTTTAGCGGCGT
* * *
67024145 TTTACTGTAAGCGCCACTAATTTTA-TATACATCAAGACCAAAACGT-TGCGTTTTGGTTAAGAT
1 TTTCCCGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAAC-TATGCGTTTTGGTTAAGAT
* * * * * * * **
67024208 ATTTTGCGGTGCTAGCCACGAATCACCGCTAATACTATAATTTAGCGGCG-
65 ATTTTGCGGCGCT-TCCACAAAGCGCCGCTATTACTGTCCTTTAGCGGCGT
* * * * * *
67024258 TTTCACTGTAGGTGCCACTAATTCTAGTATACATCAAGACCAAAACGATGTGTTTTGGTTCAGAT
1 TTTC-CCGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACTATGCGTTTTGGTTAAGAT
* * *
67024323 ATTTTGCGGCGCTTCCATAAAGCGCCGCTATTATTGTCCTTTTGCGGCGT
65 ATTTTGCGGCGCTTCCACAAAGCGCCGCTATTACTGTCCTTTAGCGGCGT
* * * *
67024373 TTTCCCATAAACGCCACTAATTCTAAG-ATACCTCAAGACC-AAACTCTGCGTTTTGGTTAAGAT
1 TTTCCCGTAAGCGCCACTAATTCT-AGTATACATCAAGACCAAAACTATGCGTTTTGGTTAAGAT
* * *
67024436 ATTTTGCGGCGCTTCCAAAAAGCGCCGCTATTACTGTCCTTTAACGGCAT
65 ATTTTGCGGCGCTTCCACAAAGCGCCGCTATTACTGTCCTTTAGCGGCGT
* * * ** * *
67024486 TTTCCCGTAAACGCCACTACTTTTAGGGTACATCAAGACCGAAACGATGCGTTTTGGTTAAGATA
1 TTTCCCGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATA
***** * * * *
67024551 TTTTGCGGCGCTTTTTGGAAGCCGCCGGTAATAC-G--CTGTAGTGGCGT
66 TTTTGCGGCGCTTCCACAAAG-CGCCGCTATTACTGTCCTTTAGCGGCGT
* * * *
67024598 TTTCCCATAATCGCCACTAATTCTAGTATACATCAAGACGAAAAC-ACTGCGTTTTGGTTAAGAG
1 TTTCCCGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACTA-TGCGTTTTGGTTAAGAT
*
67024662 ATTTCGCGG
65 ATTTTGCGG
67024671 GTAAACGCCG
Statistics
Matches: 435, Mismatches: 79, Indels: 26
0.81 0.15 0.05
Matches are distributed among these distances:
111 1 0.00
112 71 0.16
113 99 0.23
114 184 0.42
115 80 0.18
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (114 bp):
TTTCCCGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATA
TTTTGCGGCGCTTCCACAAAGCGCCGCTATTACTGTCCTTTAGCGGCGT
Found at i:67024555 original size:227 final size:225
Alignment explanation
Indices: 67024021--67024670 Score: 630
Period size: 227 Copynumber: 2.9 Consensus size: 225
67024011 TTTTGCGTGC
* * * * * *
67024021 TTTAACGGTGTTTC-CC-TAAGCGCCATTAATTCTAGTATACATCAAGACAAAAACTATGCGTTT
1 TTTAACGGCGTTTCACCGTAAACGCCACTAATTCTAGGATACATCAAGACCAAAACGATGCGTTT
* * * * * * *
67024084 TGGTTAAGATATTTTGCAGCGCTTCTCACAAAGCGCCGTTATTAATATTCTTTCGCGGCGGTTTA
66 TGGTTAAGATATTTTGCGGCGCTTC-CATAAAGCGCCGCTATT-AT-GTCTTTAGCGGCGTTTTC
** * * *
67024149 CTGTAAGCGCCACTAATTTTATATACATCAAGACCAAAACGT-TGCGTTTTGGTTAAGATATTTT
128 CCATAAACGCCACTAATTCTAGATACATCAAGACC-AAAC-TCTGCGTTTTGGTTAAGATATTTT
* ** *
67024213 GCGGTGCTAGCCACGAATCACCGCTAATACTATAA
191 GCGGCGCTAGCCAAAAAGCACCGCTAATACTATAA
* * *** * *
67024248 TTTAGCGGCGTTTCACTGTAGGTGCCACTAATTCTAGTATACATCAAGACCAAAACGATGTGTTT
1 TTTAACGGCGTTTCACCGTAAACGCCACTAATTCTAGGATACATCAAGACCAAAACGATGCGTTT
* *
67024313 TGGTTCAGATATTTTGCGGCGCTTCCATAAAGCGCCGCTATTATTGTCCTTTTGCGGCGTTTTCC
66 TGGTTAAGATATTTTGCGGCGCTTCCATAAAGCGCCGCTATTA-TGT-CTTTAGCGGCGTTTTCC
*
67024378 CATAAACGCCACTAATTCTAAGATACCTCAAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGC
129 CATAAACGCCACTAATTCT-AGATACATCAAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGC
* * * * **
67024443 GGCGCT-TCCAAAAAGCGCCGCTATTACTGTCC
193 GGCGCTAGCCAAAAAGCACCGCTAATACTATAA
* * * * *
67024475 TTTAACGGCATTTTC-CCGTAAACGCCACTACTTTTAGGGTACATCAAGACCGAAACGATGCGTT
1 TTTAACGGC-GTTTCACCGTAAACGCCACTAATTCTAGGATACATCAAGACCAAAACGATGCGTT
** * * * * * *
67024539 TTGGTTAAGATATTTTGCGGCGCTT-TTTGGAAGCCGCCGGTAATACG-CTGTAGTGGCGTTTTC
65 TTGGTTAAGATATTTTGCGGCGCTTCCAT-AAAG-CGCCGCTATTATGTCTTTAGCGGCGTTTTC
* * * * *
67024602 CCATAATCGCCACTAATTCTAGTATACATCAAGACGAAAACACTGCGTTTTGGTTAAGAGATTTC
128 CCATAAACGCCACTAATTCTAG-ATACATCAAGAC-CAAACTCTGCGTTTTGGTTAAGATATTTT
67024667 GCGG
191 GCGG
67024671 GTAAACGCCG
Statistics
Matches: 351, Mismatches: 61, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
224 2 0.01
225 43 0.12
226 30 0.09
227 107 0.30
228 92 0.26
229 77 0.22
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (225 bp):
TTTAACGGCGTTTCACCGTAAACGCCACTAATTCTAGGATACATCAAGACCAAAACGATGCGTTT
TGGTTAAGATATTTTGCGGCGCTTCCATAAAGCGCCGCTATTATGTCTTTAGCGGCGTTTTCCCA
TAAACGCCACTAATTCTAGATACATCAAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGC
GCTAGCCAAAAAGCACCGCTAATACTATAA
Found at i:67026292 original size:285 final size:281
Alignment explanation
Indices: 67025728--67026672 Score: 1504
Period size: 285 Copynumber: 3.3 Consensus size: 281
67025718 TGCATGTTGA
* * * *
67025728 AAAAAAATTAGTAAAACA--CTTACTTCAGCCATTTCTTCATATTTTTTTTCTCCACATTTTATT
1 AAAAAATTTAGTAAAACACTCTTACTTCGGCCATTTCTTCGTA--TTTTTTCTCCGCATTTTATT
67025791 ACTTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGTTTTTTTAAATTAAT
64 ACTTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGTTTTTTTAAATTAAT
* *
67025856 TTAGTGTAAAAAAAGCTTATTCTTGCCCTTTGCTCGTATTATTTTCTCGAATTTTATTACTTTC-
129 TTAGTGTAAAAAAAACTTATTCCTGCCCTTTGCTCGTATTATTTTCTCGAATTTTATTACTTTCA
67025920 A-AAAAAATTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTGAAATATTT
194 ATAAAAAATTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTGAAATATTT
67025984 GTATTAATTATTTCTGAATTTTT
259 GTATTAATTATTTCTGAATTTTT
*
67026007 AAAAAAGTTAGTAAAACACTCTTACTTCGGCCATTTCTTCGTATTTTTTCTCCGCATTTTATTAC
1 AAAAAATTTAGTAAAACACTCTTACTTCGGCCATTTCTTCGTATTTTTTCTCCGCATTTTATTAC
*
67026072 TTTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGTTTTTTAAAATTAATT
66 -TTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGTTTTTTTAAATTAATT
** *
67026137 TAGTGTAAAAAAAATTCTTATTCCTGCCCTTTGCTCGTATTATTTTCTTTAATTTTATTAATTTC
130 TAGTGTAAAAAAAA--CTTATTCCTGCCCTTTGCTCGTATTATTTTCTCGAATTTTATTACTTTC
* *
67026202 AATAAAAAATTTTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATTTTGTTTGAAATAT
193 AATAAAAAA-TTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTGAAATAT
* *
67026267 CTATATTAATTATTTCTGAATTTTT
257 TTGTATTAATTATTTCTGAATTTTT
* *
67026292 AAAAAATTTAGTAAAACACTCTTACTTCGGCCATTTATTCGTATTTTTTCCTCCGTATTTTATTA
1 AAAAAATTTAGTAAAACACTCTTACTTCGGCCATTTCTTCGTATTTTTT-CTCCGCATTTTATTA
67026357 CTTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGTGTTTTTTAAATTAAT
65 CTTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGT-TTTTTTAAATTAAT
* * * * *
67026422 TTAGTGTAAAAAACCACTTATTCCTGTCATTTGCTCGTATTATTTTCCCGAATTTTATTACTTTA
129 TTAGTGTAAAAAA-AACTTATTCCTGCCCTTTGCTCGTATTATTTTCTCGAATTTTATTACTTTC
67026487 AATAAAAAAATTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTGAAATAT
193 AAT-AAAAAATTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTGAAATAT
67026552 TTGTATTAATTATTTCTGAATTTTT
257 TTGTATTAATTATTTCTGAATTTTT
* * * * *
67026577 TAAAAATTTTGTAAAACACTCTTCCCTCGGCCATTT-TTCGTAATTTTTCCTCCGCATTTTATTA
1 AAAAAATTTAGTAAAACACTCTTACTTCGGCCATTTCTTCGT-ATTTTTTCTCCGCATTTTATTA
*
67026641 CTTTAAAAAATTTCATAATTTCTAATTTTATA
65 CTTTAAAAAATATCATAATTTCTAATTTTATA
67026673 TTTTTACTTT
Statistics
Matches: 616, Mismatches: 37, Indels: 21
0.91 0.05 0.03
Matches are distributed among these distances:
279 38 0.06
280 76 0.12
281 21 0.03
282 45 0.07
283 1 0.00
284 56 0.09
285 331 0.54
286 47 0.08
287 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.51
Consensus pattern (281 bp):
AAAAAATTTAGTAAAACACTCTTACTTCGGCCATTTCTTCGTATTTTTTCTCCGCATTTTATTAC
TTTAAAAAATATCATAATTTCTAATTTTATAAATTTATTAATTTAGTGTTTTTTTAAATTAATTT
AGTGTAAAAAAAACTTATTCCTGCCCTTTGCTCGTATTATTTTCTCGAATTTTATTACTTTCAAT
AAAAAATTTATTTTCGTATTTTATTATTTTATATTATTTCAGTACATTTTGTTTGAAATATTTGT
ATTAATTATTTCTGAATTTTT
Found at i:67027128 original size:4 final size:4
Alignment explanation
Indices: 67027107--67027184 Score: 67
Period size: 4 Copynumber: 20.0 Consensus size: 4
67027097 CTCCTTTCCT
* * *
67027107 TTTC TTTC CTTC -TT- TTTC TTTC TTT- TTTC TTCC TCTCC TTTCC TTTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T-TTC TTT-C -TTTC
67027155 TTTC TTTC TTTC TTTC TTTC -TTC -TTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
67027185 CCTCTCCTTC
Statistics
Matches: 64, Mismatches: 3, Indels: 14
0.79 0.04 0.17
Matches are distributed among these distances:
3 13 0.20
4 42 0.66
5 6 0.09
6 3 0.05
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTC
Found at i:67027130 original size:44 final size:44
Alignment explanation
Indices: 67027072--67027193 Score: 151
Period size: 44 Copynumber: 2.7 Consensus size: 44
67027062 TTCCTCCCCT
* *
67027072 CTTCTTCTTC-TTCTTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
1 CTTCTTTTTCTTTCTTTTTTTCTCCTCTCCTTTCCTTTTCTTTC
67027115 CTTCTTTTTCTTTC-TTTTTTCTTCCTCTCCTTTCCTTTTCTTTC
1 CTTCTTTTTCTTTCTTTTTTTC-TCCTCTCCTTTCCTTTTCTTTC
*
67027159 TTTCTTTCTTTCTTTCTTCTTCTTTC-CCTCTCCTT
1 CTTC-TT-TTTCTTTCTT-TT-TTTCTCCTCTCCTT
67027194 CTCTTCCCCC
Statistics
Matches: 69, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
43 16 0.23
44 27 0.39
45 2 0.03
46 8 0.12
47 10 0.14
48 2 0.03
49 4 0.06
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (44 bp):
CTTCTTTTTCTTTCTTTTTTTCTCCTCTCCTTTCCTTTTCTTTC
Found at i:67035633 original size:51 final size:51
Alignment explanation
Indices: 67035557--67035774 Score: 321
Period size: 51 Copynumber: 4.3 Consensus size: 51
67035547 ACTTCTGATC
67035557 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACA
* * *
67035608 AGTGACAAATAATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACA
* *
67035659 AGTGACAAGTGATAAATAGTAGCTTCAGCTATACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACA
* ** * * *
67035710 AGTGGCAAGTGATAAGCGGTAGCTT-AACTACACTTATTTGATCAGGGACA
1 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACA
*
67035760 AGTGAAAAGTGATAA
1 AGTGACAAGTGATAA
67035775 ATGTGATCCG
Statistics
Matches: 149, Mismatches: 18, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
50 34 0.23
51 115 0.77
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.28
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACA
Found at i:67046328 original size:20 final size:20
Alignment explanation
Indices: 67046293--67046330 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67046283 TGACCAATTC
67046293 GTAACAAAACGATAACATAA
1 GTAACAAAACGATAACATAA
67046313 GTAACTAAAACG-TAACAT
1 GTAAC-AAAACGATAACAT
67046331 TTCAAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.55, C:0.16, G:0.11, T:0.18
Consensus pattern (20 bp):
GTAACAAAACGATAACATAA
Found at i:67051674 original size:16 final size:16
Alignment explanation
Indices: 67051655--67051687 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
67051645 TATTTACCTC
67051655 ATATTATATTTTAGTT
1 ATATTATATTTTAGTT
67051671 ATATTATATTTTAGTT
1 ATATTATATTTTAGTT
67051687 A
1 A
67051688 CTTATGTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (16 bp):
ATATTATATTTTAGTT
Found at i:67064139 original size:62 final size:62
Alignment explanation
Indices: 67064026--67064144 Score: 145
Period size: 62 Copynumber: 1.9 Consensus size: 62
67064016 AAATATGTAC
*
67064026 ATTTATATAAATGGAAAAAGTAGATATGTATATGTATATATATATTATAAAGCATAAACATAAGT
1 ATTTATATAAAT-GAAAAAGTAGATATGTATA-GTACATATATATTATAAAG-ATAAACATAAGT
* *
67064091 ATTTATATAAAT-AAAAATTCG-TATGTATA-TACATATATATTACATAAAGATAAA
1 ATTTATATAAATGAAAAAGTAGATATGTATAGTACATATATATT--ATAAAGATAAA
67064145 AGGTATAAGT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
60 11 0.22
61 5 0.10
62 14 0.29
63 7 0.14
65 12 0.24
ACGTcount: A:0.50, C:0.04, G:0.09, T:0.36
Consensus pattern (62 bp):
ATTTATATAAATGAAAAAGTAGATATGTATAGTACATATATATTATAAAGATAAACATAAGT
Found at i:67064330 original size:3 final size:3
Alignment explanation
Indices: 67064275--67064315 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
67064265 GATCAAATGC
67064275 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
67064316 AAAATTAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:67065604 original size:21 final size:23
Alignment explanation
Indices: 67065580--67065630 Score: 72
Period size: 20 Copynumber: 2.3 Consensus size: 23
67065570 TTAAAATACG
67065580 TTAAAAATATTTTTTT-TATTT-
1 TTAAAAATATTTTTTTGTATTTA
*
67065601 TT-AAAATATTTTTTTGTGTTTA
1 TTAAAAATATTTTTTTGTATTTA
67065623 TTAAAAAT
1 TTAAAAAT
67065631 CGGGCTGGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 13 0.50
21 6 0.23
22 2 0.08
23 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (23 bp):
TTAAAAATATTTTTTTGTATTTA
Found at i:67070627 original size:14 final size:14
Alignment explanation
Indices: 67070606--67070639 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
67070596 TGATATGGGT
67070606 TTAT-GGGTTTTGG
1 TTATAGGGTTTTGG
67070619 TTATAGGGTTTTGG
1 TTATAGGGTTTTGG
67070633 TTATAGG
1 TTATAGG
67070640 CAAATGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (14 bp):
TTATAGGGTTTTGG
Found at i:67079111 original size:54 final size:54
Alignment explanation
Indices: 67079029--67079136 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
67079019 GGGGGCTTAG
67079029 TAGTGAAGAAGATGAAACCAAAACCCTTTTCTCTTTAATGGATCTCTGGTTTGA
1 TAGTGAAGAAGATGAAACCAAAACCCTTTTCTCTTTAATGGATCTCTGGTTTGA
67079083 TAGTGAAGAAGATGAAACCAAAACCCTTTTCTCTTTAATGGATCTCTGGTTTGA
1 TAGTGAAGAAGATGAAACCAAAACCCTTTTCTCTTTAATGGATCTCTGGTTTGA
67079137 CTCATTTGTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (54 bp):
TAGTGAAGAAGATGAAACCAAAACCCTTTTCTCTTTAATGGATCTCTGGTTTGA
Found at i:67079455 original size:23 final size:24
Alignment explanation
Indices: 67079421--67079465 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
67079411 GCCCGGCCCG
67079421 TTTTTAATTAAAATTAAAATTATT
1 TTTTTAATTAAAATTAAAATTATT
67079445 TTTTTAA-TAAAATTAAAATTA
1 TTTTTAATTAAAATTAAAATTA
67079466 ATTGCTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TTTTTAATTAAAATTAAAATTATT
Found at i:67079477 original size:16 final size:16
Alignment explanation
Indices: 67079456--67079497 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
67079446 TTTTAATAAA
67079456 ATTAAAATTAATTGCT
1 ATTAAAATTAATTGCT
*
67079472 ATTAAAATTAATTGTT
1 ATTAAAATTAATTGCT
*
67079488 AGTAAAATTA
1 ATTAAAATTA
67079498 TCAAATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (16 bp):
ATTAAAATTAATTGCT
Found at i:67079575 original size:9 final size:9
Alignment explanation
Indices: 67079563--67079590 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
67079553 TTTATCAAAT
67079563 TATTAATTG
1 TATTAATTG
67079572 TATTAATTG
1 TATTAATTG
67079581 TATTAATTG
1 TATTAATTG
67079590 T
1 T
67079591 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:67083818 original size:21 final size:20
Alignment explanation
Indices: 67083792--67083830 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
67083782 AATAATAGAT
*
67083792 TAATAACATATATAATAATGG
1 TAATAACAT-TAAAATAATGG
67083813 TAATAACATTAAAATAAT
1 TAATAACATTAAAATAAT
67083831 CAATTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (20 bp):
TAATAACATTAAAATAATGG
Found at i:67084213 original size:9 final size:9
Alignment explanation
Indices: 67084199--67084229 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
67084189 GTTAAACGAA
67084199 TCGAGTTAT
1 TCGAGTTAT
*
67084208 TCGAGTTAA
1 TCGAGTTAT
67084217 TCGAGTTAT
1 TCGAGTTAT
67084226 TCGA
1 TCGA
67084230 ATCAATTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:67084312 original size:9 final size:9
Alignment explanation
Indices: 67084283--67084319 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
67084273 TGAGTTTTCG
67084283 AATTCGAAT
1 AATTCGAAT
*
67084292 AACTCGAAT
1 AATTCGAAT
67084301 AATTCGAAT
1 AATTCGAAT
*
67084310 AATTCAAAT
1 AATTCGAAT
67084319 A
1 A
67084320 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:67084566 original size:30 final size:31
Alignment explanation
Indices: 67084532--67084591 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
67084522 AAACCTTTTA
*
67084532 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
** *
67084562 TTTTCCCTTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
67084592 TCCAACCTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:67087901 original size:8 final size:8
Alignment explanation
Indices: 67087888--67087916 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
67087878 CACTAGAGAT
67087888 CAGTGTTA
1 CAGTGTTA
67087896 CAGTGTTA
1 CAGTGTTA
67087904 CAGTGTTA
1 CAGTGTTA
67087912 CAGTG
1 CAGTG
67087917 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:67088030 original size:23 final size:23
Alignment explanation
Indices: 67088003--67088055 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
67087993 AGTGTTATTG
67088003 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
67088026 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
67088049 ATCAGTG
1 ATCAGTG
67088056 TGGCACTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:67097987 original size:94 final size:93
Alignment explanation
Indices: 67097872--67098047 Score: 259
Period size: 94 Copynumber: 1.9 Consensus size: 93
67097862 TTAAGCAAGT
* *
67097872 TAAATTTGTACTGGAGGTCTTGCTGTTAGCTAAAGTTGGCTAA-T-TTGATGATTGCCT-ATGTT
1 TAAACTTGTACTGGAGATCTTGCTGTTAGCTAAAGTTGG--AATTATTGATGATTG-CTGATGTT
67097934 TCTTTTAATTCCAAAAGATTACCGTTACCTAG
63 TCTTTTAA-TCCAAAAGATTACCGTTACCTAG
*
67097966 TAAACTTGTACTGGAGATCTTGCTGTTAGCTAAAGTTGGAATTATTGATGATTGCTGATGTTTTT
1 TAAACTTGTACTGGAGATCTTGCTGTTAGCTAAAGTTGGAATTATTGATGATTGCTGATGTTTCT
*
67098031 TTTTATCCAAAAGATTA
66 TTTAATCCAAAAGATTA
67098048 AACGTTACGT
Statistics
Matches: 75, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
92 2 0.03
93 15 0.20
94 58 0.77
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.41
Consensus pattern (93 bp):
TAAACTTGTACTGGAGATCTTGCTGTTAGCTAAAGTTGGAATTATTGATGATTGCTGATGTTTCT
TTTAATCCAAAAGATTACCGTTACCTAG
Found at i:67102619 original size:67 final size:67
Alignment explanation
Indices: 67102542--67102676 Score: 270
Period size: 67 Copynumber: 2.0 Consensus size: 67
67102532 TTCACTTTTG
67102542 TGTCTCTCTTTCATTTATCACCATGCAGTTTATTACTATGTACTTGGACTTAGGTGTGAGGGTAG
1 TGTCTCTCTTTCATTTATCACCATGCAGTTTATTACTATGTACTTGGACTTAGGTGTGAGGGTAG
67102607 GA
66 GA
67102609 TGTCTCTCTTTCATTTATCACCATGCAGTTTATTACTATGTACTTGGACTTAGGTGTGAGGGTAG
1 TGTCTCTCTTTCATTTATCACCATGCAGTTTATTACTATGTACTTGGACTTAGGTGTGAGGGTAG
67102674 GA
66 GA
67102676 T
1 T
67102677 ACAGTCATGC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.41
Consensus pattern (67 bp):
TGTCTCTCTTTCATTTATCACCATGCAGTTTATTACTATGTACTTGGACTTAGGTGTGAGGGTAG
GA
Found at i:67103160 original size:52 final size:52
Alignment explanation
Indices: 67103082--67103187 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
67103072 TAAGTTGTAT
67103082 TTGATACCCAAACATTCTTTCCTTAAATCTCATTGGCACATTCTTCCACTCA
1 TTGATACCCAAACATTCTTTCCTTAAATCTCATTGGCACATTCTTCCACTCA
*
67103134 TTGATACCCAAACATTCTTTCCTTAAATCTCATTGGTACATTCTTCCACTCA
1 TTGATACCCAAACATTCTTTCCTTAAATCTCATTGGCACATTCTTCCACTCA
67103186 TT
1 TT
67103188 TTTCCCAAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.26, C:0.29, G:0.06, T:0.39
Consensus pattern (52 bp):
TTGATACCCAAACATTCTTTCCTTAAATCTCATTGGCACATTCTTCCACTCA
Found at i:67105448 original size:23 final size:23
Alignment explanation
Indices: 67105403--67105452 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
67105393 GGGTGTCAAT
*
67105403 GTTTAAATTAGTATTTATTTTTG
1 GTTTAAATTAGTATTTATATTTG
*
67105426 GTTTAAATTTGTATTTGA-ATTTG
1 GTTTAAATTAGTATTT-ATATTTG
67105449 GTTT
1 GTTT
67105453 TCATCACATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (23 bp):
GTTTAAATTAGTATTTATATTTG
Found at i:67120756 original size:15 final size:15
Alignment explanation
Indices: 67120736--67120766 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67120726 GTAGTGTGAC
67120736 TACCAAATTAATATT
1 TACCAAATTAATATT
67120751 TACCAAATTAATATT
1 TACCAAATTAATATT
67120766 T
1 T
67120767 CCGCTAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (15 bp):
TACCAAATTAATATT
Found at i:67128844 original size:20 final size:20
Alignment explanation
Indices: 67128821--67128867 Score: 80
Period size: 18 Copynumber: 2.5 Consensus size: 20
67128811 TTTGGCGAAA
67128821 TCGTGTTTTGATCTTCGAGC
1 TCGTGTTTTGATCTTCGAGC
67128841 TCGTG--TTGATCTTCGAGC
1 TCGTGTTTTGATCTTCGAGC
67128859 TCGTGTTTT
1 TCGTGTTTT
67128868 TTTTTTTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 18 0.72
20 7 0.28
ACGTcount: A:0.09, C:0.19, G:0.26, T:0.47
Consensus pattern (20 bp):
TCGTGTTTTGATCTTCGAGC
Found at i:67131304 original size:16 final size:16
Alignment explanation
Indices: 67131283--67131318 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
67131273 TGTTTCTCAG
67131283 TCTTCCTTGATAATGT
1 TCTTCCTTGATAATGT
67131299 TCTTCCTTGATAATGT
1 TCTTCCTTGATAATGT
67131315 TCTT
1 TCTT
67131319 TCATCTATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.17, C:0.19, G:0.11, T:0.53
Consensus pattern (16 bp):
TCTTCCTTGATAATGT
Found at i:67134811 original size:27 final size:28
Alignment explanation
Indices: 67134776--67134832 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
67134766 ATATTTTTTA
*
67134776 TTTTA-TTTTTTAATTTTAAAATACTTT
1 TTTTATTTTTTTAATTTTAAAATAATTT
*
67134803 TTTTATTTTTTTATTTTTAAAATAATTT
1 TTTTATTTTTTTAATTTTAAAATAATTT
67134831 TT
1 TT
67134833 AATGTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (28 bp):
TTTTATTTTTTTAATTTTAAAATAATTT
Found at i:67135344 original size:12 final size:12
Alignment explanation
Indices: 67135327--67135357 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
67135317 ACTTATTCGT
67135327 ATCAATTCTCAA
1 ATCAATTCTCAA
*
67135339 ATCAATTCTTAA
1 ATCAATTCTCAA
67135351 ATCAATT
1 ATCAATT
67135358 GGAACTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (12 bp):
ATCAATTCTCAA
Found at i:67137910 original size:31 final size:31
Alignment explanation
Indices: 67137875--67137945 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
67137865 TAAAGTTTTT
* **
67137875 ATTCAATGGCTTAAATGAAAACTTTTGAATA
1 ATTCAATGACTTAAATGAAAACTTTCAAATA
* * *
67137906 ATTCAGTAATTTAAATGAAAACTTTCAAATA
1 ATTCAATGACTTAAATGAAAACTTTCAAATA
67137937 ATTCAATGA
1 ATTCAATGA
67137946 TTATTTTATA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (31 bp):
ATTCAATGACTTAAATGAAAACTTTCAAATA
Found at i:67139390 original size:110 final size:114
Alignment explanation
Indices: 67139178--67139390 Score: 294
Period size: 110 Copynumber: 1.9 Consensus size: 114
67139168 TCAAAACCTT
*
67139178 AAATTTATTTCCAATTTTGCATAAAAAAATCATATTTTTTTCAAGGACAAAACACATGAAACACG
1 AAATTTATTCCCAATTTTGCATAAAAAAATCATATTTTTTTCAAGGACAAAACACATGAAACACG
*
67139243 AAATATAGCTGAATAAAACGACCCCAGAAGCTTACATTTCAATGCCTCC
66 AAATATAGCTAAATAAAACGACCCCAGAAGCTTACATTTCAATGCCTCC
* * * * *
67139292 AAATTTA-TCCCAATTTTGCATCAAAAATTCA-ATTTTTTT-AAGGATAAAACA-ATGAAATATG
1 AAATTTATTCCCAATTTTGCATAAAAAAATCATATTTTTTTCAAGGACAAAACACATGAAACACG
*
67139353 AAATATAGCTAAATTAAAA-GAACCCCA-AAGTTTACATT
66 AAATATAGCTAAA-TAAAACG-ACCCCAGAAGCTTACATT
67139391 ACAGCAAAAA
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
110 31 0.35
111 22 0.25
112 8 0.09
113 21 0.24
114 7 0.08
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (114 bp):
AAATTTATTCCCAATTTTGCATAAAAAAATCATATTTTTTTCAAGGACAAAACACATGAAACACG
AAATATAGCTAAATAAAACGACCCCAGAAGCTTACATTTCAATGCCTCC
Found at i:67140053 original size:44 final size:42
Alignment explanation
Indices: 67140005--67140096 Score: 96
Period size: 44 Copynumber: 2.1 Consensus size: 42
67139995 GATACATGTC
67140005 TATTTAAATTTTGTTG-GAAAACATATGTTTCAATATTTTTAATG
1 TATTTAAA-TTTGTTGAG-AAACATATGTTTCAAT-TTTTTAATG
* * * **
67140049 TATTTTCAATTTGTTGAGAAACATTTGTTTTAATTTTTTTGTG
1 TA-TTTAAATTTGTTGAGAAACATATGTTTCAATTTTTTAATG
67140092 TATTT
1 TATTT
67140097 GATATATTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
42 3 0.07
43 9 0.22
44 23 0.56
45 6 0.15
ACGTcount: A:0.28, C:0.04, G:0.12, T:0.55
Consensus pattern (42 bp):
TATTTAAATTTGTTGAGAAACATATGTTTCAATTTTTTAATG
Found at i:67140892 original size:10 final size:10
Alignment explanation
Indices: 67140877--67140915 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
67140867 ACCAATTTTT
67140877 AAAAATATAA
1 AAAAATATAA
**
67140887 AAAAATATTTT
1 AAAAATA-TAA
67140898 AAAAATATAA
1 AAAAATATAA
67140908 AAAAATAT
1 AAAAATAT
67140916 TTTTTATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AAAAATATAA
Found at i:67140899 original size:21 final size:21
Alignment explanation
Indices: 67140873--67140918 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
67140863 AAACACCAAT
67140873 TTTTAAAAATATAAAAAAATA
1 TTTTAAAAATATAAAAAAATA
67140894 TTTTAAAAATATAAAAAAATA
1 TTTTAAAAATATAAAAAAATA
67140915 TTTT
1 TTTT
67140919 TTATTATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TTTTAAAAATATAAAAAAATA
Found at i:67147777 original size:18 final size:16
Alignment explanation
Indices: 67147754--67147796 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 16
67147744 CACAAATAAT
67147754 TTAAAAATTATAAACATA
1 TTAAAAATTA-AAA-ATA
67147772 TTAAAAAATTAAAAATA
1 TT-AAAAATTAAAAATA
67147789 TATAAAAA
1 T-TAAAAA
67147797 GTTCGTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 9 0.39
18 6 0.26
19 8 0.35
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAAAAATTAAAAATA
Found at i:67147780 original size:19 final size:18
Alignment explanation
Indices: 67147756--67147796 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
67147746 CAAATAATTT
67147756 AAAAATTATAAACATAT-TA
1 AAAAATTA-AAA-ATATATA
67147775 AAAAATTAAAAATATATA
1 AAAAATTAAAAATATATA
67147793 AAAA
1 AAAA
67147797 GTTCGTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.19
18 9 0.43
19 8 0.38
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAAATTAAAAATATATA
Found at i:67149374 original size:40 final size:40
Alignment explanation
Indices: 67149330--67149408 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
67149320 TACGTGGCAA
* * *
67149330 CAAAGCGCTCTTACGTGGACGCGCTTTGTTGCCACATAGG
1 CAAAGCGCGCTGACGTGGACGCGCTTTGCTGCCACATAGG
*
67149370 CAAAGCGCGCTGACGTGGACGCGTTTTGCTGCCACATAG
1 CAAAGCGCGCTGACGTGGACGCGCTTTGCTGCCACATAG
67149409 CTCGCCCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (40 bp):
CAAAGCGCGCTGACGTGGACGCGCTTTGCTGCCACATAGG
Found at i:67149577 original size:22 final size:22
Alignment explanation
Indices: 67149546--67149599 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
67149536 TCTCTCAATT
*
67149546 ATTT-TCTCAATTTCCTTTC-A
1 ATTTCTCTCAATTTCCTTCCAA
67149566 ATTTGCTCTCAATTTCCTTCCAA
1 ATTT-CTCTCAATTTCCTTCCAA
67149589 ATTTCTCTCAA
1 ATTTCTCTCAA
67149600 ATCCATATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 4 0.13
22 21 0.70
23 5 0.17
ACGTcount: A:0.22, C:0.28, G:0.02, T:0.48
Consensus pattern (22 bp):
ATTTCTCTCAATTTCCTTCCAA
Found at i:67149625 original size:51 final size:51
Alignment explanation
Indices: 67149561--67149660 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
67149551 CTCAATTTCC
*
67149561 TTTCAATTTGCTCTCAATTTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TTTCAATTTGCTCTCAATTTCCTCT-CAAATTTATCTCAAATCCATATTTAA
* * *
67149612 TTTCAATTTGCTCTCAATTTCCTCTTAAATTTATCTTAAATCCCTATTT
1 TTTCAATTTGCTCTCAATTTCCTCTCAAATTTATCTCAAATCCATATTT
67149661 TTAATTATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 43 0.98
52 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.02, T:0.48
Consensus pattern (51 bp):
TTTCAATTTGCTCTCAATTTCCTCTCAAATTTATCTCAAATCCATATTTAA
Found at i:67151743 original size:7 final size:7
Alignment explanation
Indices: 67151727--67151767 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
67151717 AAATTTGAAT
67151727 CTCAAAC
1 CTCAAAC
*
67151734 CTCGAAC
1 CTCAAAC
67151741 CTCAAAC
1 CTCAAAC
*
67151748 CTCGAAC
1 CTCAAAC
67151755 CTCAAAC
1 CTCAAAC
67151762 C-CAAAC
1 CTCAAAC
67151768 AGTTTGTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
6 5 0.17
7 25 0.83
ACGTcount: A:0.39, C:0.44, G:0.05, T:0.12
Consensus pattern (7 bp):
CTCAAAC
Found at i:67151746 original size:14 final size:14
Alignment explanation
Indices: 67151727--67151762 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
67151717 AAATTTGAAT
67151727 CTCAAACCTCGAAC
1 CTCAAACCTCGAAC
67151741 CTCAAACCTCGAAC
1 CTCAAACCTCGAAC
67151755 CTCAAACC
1 CTCAAACC
67151763 CAAACAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.36, C:0.44, G:0.06, T:0.14
Consensus pattern (14 bp):
CTCAAACCTCGAAC
Found at i:67154893 original size:21 final size:21
Alignment explanation
Indices: 67154868--67154907 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
67154858 ATGTAAGTTC
*
67154868 AAATATGT-TATAAATAATTCT
1 AAATAT-TATATAAAAAATTCT
67154889 AAATATTATATAAAAAATT
1 AAATATTATATAAAAAATT
67154908 AATAATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (21 bp):
AAATATTATATAAAAAATTCT
Found at i:67165365 original size:21 final size:20
Alignment explanation
Indices: 67165341--67165383 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
67165331 TAAAAAGTAA
*
67165341 AATTTAATTGATTGCAACATT
1 AATTAAATTGATTG-AACATT
* *
67165362 AATTAAATTTATTGACCATT
1 AATTAAATTGATTGAACATT
67165382 AA
1 AA
67165384 ATCATATATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (20 bp):
AATTAAATTGATTGAACATT
Found at i:67168773 original size:21 final size:22
Alignment explanation
Indices: 67168730--67168775 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
67168720 TTATAGAGAT
* *
67168730 AAACTTGAATTTTTATGAGGAA
1 AAACATGAATTTTTATCAGGAA
*
67168752 AAACATGAATTTTTA-CATGAA
1 AAACATGAATTTTTATCAGGAA
67168773 AAA
1 AAA
67168776 AGCATTTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.48, C:0.07, G:0.13, T:0.33
Consensus pattern (22 bp):
AAACATGAATTTTTATCAGGAA
Found at i:67169979 original size:18 final size:18
Alignment explanation
Indices: 67169949--67169986 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
67169939 ATTTAATCAA
*
67169949 ATATTAACATATATAAAC
1 ATATTAACATATAAAAAC
67169967 ATATTGAAC-TATAAAAAC
1 ATATT-AACATATAAAAAC
67169985 AT
1 AT
67169987 TTACATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.55, C:0.11, G:0.03, T:0.32
Consensus pattern (18 bp):
ATATTAACATATAAAAAC
Found at i:67171325 original size:156 final size:156
Alignment explanation
Indices: 67171039--67171507 Score: 848
Period size: 156 Copynumber: 3.0 Consensus size: 156
67171029 GGAAAACCCT
* *
67171039 ACTGCTCCTGTATCTTATAATTCTGAGGAGGGAGTTGAATTGCTACCAAAGGTTTTAGATGATTG
1 ACTGCTCCTGTATCTTATAATTCTGAGGTGGGAGTTGAATTGCTACCAAAGGTTTTAGATGATTC
*
67171104 GACCATTGCCAACAGGATGGGTATGAATATGGAGCTGAACACTGAATTCCTACCATATCCTACAG
66 GACTATTGCCAACAGGATGGGTATGAATATGGAGCTGAACACTGAATTCCTACCATATCCTACAG
*
67171169 AAGATTCTACAAGTGCTAAAGAAATG
131 AAGATTCTACAAGTGCTAAAGAGATG
*
67171195 AGTGCTCCTGTATCTTATAATTCTGAGGTGGGAGTTGAATTGCTACCAAAGGTTTTAGATGATTC
1 ACTGCTCCTGTATCTTATAATTCTGAGGTGGGAGTTGAATTGCTACCAAAGGTTTTAGATGATTC
* *
67171260 GACTATTGCCAACAGGATCGGTATGAATATGGAGCTGAACACTGAATTGCTACCATATCCTACAG
66 GACTATTGCCAACAGGATGGGTATGAATATGGAGCTGAACACTGAATTCCTACCATATCCTACAG
67171325 AAGATTCTACAAGTGCTAAAGAGATG
131 AAGATTCTACAAGTGCTAAAGAGATG
*
67171351 ACTGCTCCTGTATTTTATAATTCTGAGGTGGGAGTTGAATTGCTACCAAAGGTTTTAGATGATTC
1 ACTGCTCCTGTATCTTATAATTCTGAGGTGGGAGTTGAATTGCTACCAAAGGTTTTAGATGATTC
* *
67171416 GACTATTGCCAACAGGATGGGAATGAATATGGAGCTGAACACTGAATTCCTAACATATCCTACAG
66 GACTATTGCCAACAGGATGGGTATGAATATGGAGCTGAACACTGAATTCCTACCATATCCTACAG
67171481 AAGATTCTACAAGTGCTAAAGAGATG
131 AAGATTCTACAAGTGCTAAAGAGATG
67171507 A
1 A
67171508 ACATTGAATT
Statistics
Matches: 300, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
156 300 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (156 bp):
ACTGCTCCTGTATCTTATAATTCTGAGGTGGGAGTTGAATTGCTACCAAAGGTTTTAGATGATTC
GACTATTGCCAACAGGATGGGTATGAATATGGAGCTGAACACTGAATTCCTACCATATCCTACAG
AAGATTCTACAAGTGCTAAAGAGATG
Found at i:67173909 original size:54 final size:54
Alignment explanation
Indices: 67173808--67173917 Score: 130
Period size: 54 Copynumber: 2.0 Consensus size: 54
67173798 TCCACTCCTC
* * *
67173808 CATCTCTTTAGGACCTGTAGAATCTTCACTAGGCTTTGGTAACAATTCAATGTT
1 CATCTCTTTAGCACCTGTAGAATCTTCACTAGGATATGGTAACAATTCAATGTT
* ** * ** *
67173862 CATCTCTTTAGCACTTGTAGAATCTTCTGTAGGATATGTTAGGAATTCAGTGTT
1 CATCTCTTTAGCACCTGTAGAATCTTCACTAGGATATGGTAACAATTCAATGTT
67173916 CA
1 CA
67173918 GCTCCATATT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (54 bp):
CATCTCTTTAGCACCTGTAGAATCTTCACTAGGATATGGTAACAATTCAATGTT
Found at i:67174145 original size:156 final size:156
Alignment explanation
Indices: 67173861--67174329 Score: 866
Period size: 156 Copynumber: 3.0 Consensus size: 156
67173851 AATTCAATGT
*
67173861 TCATCTCTTTAGCACTTGTAGAATCTTCTGTAGGATATGTTAGGAATTCAGTGTTCAGCTCCATA
1 TCATCTCTTTAGCACTTGTAGAATCTTCTGTAGGATATGGTAGGAATTCAGTGTTCAGCTCCATA
*
67173926 TTCATTCCCATCCTGTTGGCAATAGTCGAATCATCTAAAACCTTTGGTAGCAATTCAACTCCCAC
66 TTCATACCCATCCTGTTGGCAATAGTCGAATCATCTAAAACCTTTGGTAGCAATTCAACTCCCAC
67173991 CTCAGAATTATAAGATACAGGAGCAG
131 CTCAGAATTATAAGATACAGGAGCAG
*
67174017 TCATCTCTTTAGCACTTGTAGAATCTTCTGTAGGATATGGTAGCAATTCAGTGTTCAGCTCCATA
1 TCATCTCTTTAGCACTTGTAGAATCTTCTGTAGGATATGGTAGGAATTCAGTGTTCAGCTCCATA
*
67174082 TTCATACCGATCCTGTTGGCAATAGTCGAATCATCTAAAACCTTTGGTAGCAATTCAACTCCCAC
66 TTCATACCCATCCTGTTGGCAATAGTCGAATCATCTAAAACCTTTGGTAGCAATTCAACTCCCAC
*
67174147 CTCAGAATTATAAGATACAGGAGCAC
131 CTCAGAATTATAAGATACAGGAGCAG
*
67174173 TCATTTCTTTAGCACTTGTAGAATCTTCTGTAGGATATGGTAGGAATTCAGTGTTCAGCTCCATA
1 TCATCTCTTTAGCACTTGTAGAATCTTCTGTAGGATATGGTAGGAATTCAGTGTTCAGCTCCATA
* *
67174238 TTCATACCCATCCTGTTGGCAATGGTCCAATCATCTAAAACCTTTGGTAGCAATTCAACTCCCAC
66 TTCATACCCATCCTGTTGGCAATAGTCGAATCATCTAAAACCTTTGGTAGCAATTCAACTCCCAC
67174303 CTCAGAATTATAAGATACAGGAGCAG
131 CTCAGAATTATAAGATACAGGAGCAG
67174329 T
1 T
67174330 AGGATTTTCC
Statistics
Matches: 302, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
156 302 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (156 bp):
TCATCTCTTTAGCACTTGTAGAATCTTCTGTAGGATATGGTAGGAATTCAGTGTTCAGCTCCATA
TTCATACCCATCCTGTTGGCAATAGTCGAATCATCTAAAACCTTTGGTAGCAATTCAACTCCCAC
CTCAGAATTATAAGATACAGGAGCAG
Found at i:67179089 original size:24 final size:25
Alignment explanation
Indices: 67179056--67179111 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
67179046 GCATTGATGC
*
67179056 ACCTAAAAAT-GATCATGA-GTGCTT
1 ACCTATAAATAGATCAT-ATGTGCTT
67179080 ACCTATAAATCAGATCATATGTGCTT
1 ACCTATAAAT-AGATCATATGTGCTT
*
67179106 AACTAT
1 ACCTAT
67179112 GTTATACGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 9 0.33
25 1 0.04
26 17 0.63
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (25 bp):
ACCTATAAATAGATCATATGTGCTT
Found at i:67180381 original size:3 final size:3
Alignment explanation
Indices: 67180373--67180405 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
67180363 GAAACGAGGG
67180373 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
67180406 AGGGGTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:67186956 original size:19 final size:19
Alignment explanation
Indices: 67186932--67186980 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
67186922 ATATATTAAA
*
67186932 AATTTTAAAAATAAATAAT
1 AATTTTAAAAATAAAGAAT
* *
67186951 AATTTTAAATATTAAGAAT
1 AATTTTAAAAATAAAGAAT
67186970 AATTTTAAAAA
1 AATTTTAAAAA
67186981 CTATTTATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AATTTTAAAAATAAAGAAT
Found at i:67188196 original size:26 final size:26
Alignment explanation
Indices: 67188166--67188218 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
67188156 TAAATATGGA
*
67188166 TAAACTATAAAAATAGTCACTTTTGT
1 TAAACTACAAAAATAGTCACTTTTGT
*
67188192 TAAACTACAAAAATAGTTACTTTTGT
1 TAAACTACAAAAATAGTCACTTTTGT
67188218 T
1 T
67188219 TGTCTCAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (26 bp):
TAAACTACAAAAATAGTCACTTTTGT
Found at i:67198265 original size:26 final size:26
Alignment explanation
Indices: 67198236--67198289 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
67198226 AATTTCTACG
67198236 CTTTGATTTTTACATAATTTAGACTC
1 CTTTGATTTTTACATAATTTAGACTC
67198262 CTTTGATTTTTACATAATTTAGACTC
1 CTTTGATTTTTACATAATTTAGACTC
67198288 CT
1 CT
67198290 GTCCGTTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.17, G:0.07, T:0.50
Consensus pattern (26 bp):
CTTTGATTTTTACATAATTTAGACTC
Found at i:67198423 original size:31 final size:30
Alignment explanation
Indices: 67198382--67198444 Score: 90
Period size: 31 Copynumber: 2.1 Consensus size: 30
67198372 TATATAAGAA
*
67198382 TTGTTAAATTTCAGTTTTAATCCTTATATT
1 TTGTTAAATTTCAGATTTAATCCTTATATT
* *
67198412 TTGTTCAAATTTGAGATTTAATCTTTATATT
1 TTGTT-AAATTTCAGATTTAATCCTTATATT
67198443 TT
1 TT
67198445 AATATTGACA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 5 0.17
31 24 0.83
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.57
Consensus pattern (30 bp):
TTGTTAAATTTCAGATTTAATCCTTATATT
Found at i:67198578 original size:149 final size:150
Alignment explanation
Indices: 67198305--67198607 Score: 380
Period size: 149 Copynumber: 2.0 Consensus size: 150
67198295 TTCTTTTTCT
* *
67198305 TAATTTTCTTTTGACATGAGAAAACAATGGCTAAATTTCAGTATTAATCCCTCTACCTTTTTGAG
1 TAATTTTCTTTTGACATGAGAAAACAATGGCTAAATTTCAGTATTAATCCATCTACCTTTTTAAG
* ** * * * * *
67198370 ATTATATAAGAATTGTTAAATTTCAGTTTTAATCCTTATATTTTGTTCAAATTTGAGATTTAATC
66 ATTATATAAGAATGGTTAAATTTCAAATTTAATCCCTATAATGTGCTCAAATTTAAGATTTAATC
* *
67198435 TTTATA-TTTTAATATTGACA
131 TCTATACTTTGAAT-TTGACA
* *
67198455 TAATTTTCTTTTGACATGAG-AAATAATGGCTAAATTTCAGT-TATAATTCATCTA-CTTTTTAA
1 TAATTTTCTTTTGACATGAGAAAACAATGGCTAAATTTCAGTAT-TAATCCATCTACCTTTTT-A
* ** *
67198517 AGATTATATAAGAATGGTTAAATTTTAAATTTGGTCCCTATAATGTGCTCAATTTTAAGATTTAA
64 AGATTATATAAGAATGGTTAAATTTCAAATTTAATCCCTATAATGTGCTCAAATTTAAGATTTAA
*
67198582 TCTCTATACTTTGAGTTTGACA
129 TCTCTATACTTTGAATTTGACA
67198604 TAAT
1 TAAT
67198608 CCAAATTAAA
Statistics
Matches: 131, Mismatches: 19, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
148 7 0.05
149 99 0.76
150 25 0.19
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (150 bp):
TAATTTTCTTTTGACATGAGAAAACAATGGCTAAATTTCAGTATTAATCCATCTACCTTTTTAAG
ATTATATAAGAATGGTTAAATTTCAAATTTAATCCCTATAATGTGCTCAAATTTAAGATTTAATC
TCTATACTTTGAATTTGACA
Found at i:67202743 original size:149 final size:146
Alignment explanation
Indices: 67202471--67202901 Score: 501
Period size: 143 Copynumber: 2.9 Consensus size: 146
67202461 ATCAATCAAC
* *
67202471 CAACCAACAACTACAACAAATAAAAGAATCCCTTTATCTAAACATCAAATAAATCATTAAATTCC
1 CAACCAACAACTACAACAAAAAAAAGAAT-CCTTTATCTAAACATTAAATAAATCATTAAATTCC
* * * * *
67202536 ATA-AAAAAAAACACTGATTGTTGAAGATTCAAACGGGAAAACCCTCAAAGTTGTTTCCAAACTA
65 A-AGGAAAAAAACCCTAATTGTTGAAGATTCAAACGGGAAAACCCTCAAAATCGTTTCCAAACTA
*
67202600 TAAATAAATTTAAAAAAT
129 TAAATAAATTTAAAAAAG
* *
67202618 CAACCAACAACTACAACAAAAAAAAAGAATACCTTTATCTCAACATTAAATAAATCATTAATTTC
1 CAACCAACAACTACAAC-AAAAAAAAGAAT-CCTTTATCTAAACATTAAATAAATCATTAAATTC
* **
67202683 CAACGGAAAAAAACCCTAATTGTGGAAGATTCAAACGGGAAAACCCTCAAAATCGTTTCCAAAGA
64 CAA-GGAAAAAAACCCTAATTGTTGAAGATTCAAACGGGAAAACCCTCAAAATCGTTTCCAAACT
*
67202748 ATAATTAAA-TTAAAAAAG
128 ATAAATAAATTTAAAAAAG
* * ** * * * ** * * * *
67202766 CCA-CATCCTCTTCAACTACAACGACAAT-CTTTATCTGAACAATAAATAAATTATTAAATTCCA
1 CAACCAACAACTACAACAAAAAAAAGAATCCTTTATCTAAACATTAAATAAATCATTAAATTCCA
* * * * *
67202829 AGGAAAAAACCCCTAATTGTTGAAGATTCAAACGAGAAAACCCTCCAAATCGTTTTCAAACTACA
66 AGGAAAAAAACCCTAATTGTTGAAGATTCAAACGGGAAAACCCTCAAAATCGTTTCCAAACTATA
67202894 AATAAATT
131 AATAAATT
67202902 CAAAGCAGCC
Statistics
Matches: 242, Mismatches: 38, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
143 61 0.25
144 33 0.14
146 7 0.03
147 27 0.11
148 54 0.22
149 60 0.25
ACGTcount: A:0.48, C:0.20, G:0.08, T:0.24
Consensus pattern (146 bp):
CAACCAACAACTACAACAAAAAAAAGAATCCTTTATCTAAACATTAAATAAATCATTAAATTCCA
AGGAAAAAAACCCTAATTGTTGAAGATTCAAACGGGAAAACCCTCAAAATCGTTTCCAAACTATA
AATAAATTTAAAAAAG
Found at i:67205090 original size:3 final size:3
Alignment explanation
Indices: 67205073--67205113 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
67205063 CCAAACAAAG
* *
67205073 CCT CCA CCT -CT CCT CCT CCT CCT CCT CCT CCT CCT CTT CCT
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
67205114 TTGCTGTTCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.02, C:0.63, G:0.00, T:0.34
Consensus pattern (3 bp):
CCT
Found at i:67217480 original size:13 final size:13
Alignment explanation
Indices: 67217462--67217497 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
67217452 TATGTGTCAT
67217462 AATTTAAAATAAA
1 AATTTAAAATAAA
67217475 AATTTAAAATAAA
1 AATTTAAAATAAA
*
67217488 TATTGTAAAA
1 AATT-TAAAA
67217498 ATAGACGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 16 0.76
14 5 0.24
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (13 bp):
AATTTAAAATAAA
Found at i:67221898 original size:29 final size:29
Alignment explanation
Indices: 67221841--67221905 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
67221831 AAATTTTAAA
*
67221841 TTAATAATGATAAAATTAAACTTTGATCCC
1 TTAA-AATGATAAAATTAAACTTTAATCCC
* *
67221871 TTAAAATGATAAAATTTTAA-TTTAATCCT
1 TTAAAATGATAAAA-TTAAACTTTAATCCC
67221900 TTAAAA
1 TTAAAA
67221906 AAATATGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 23 0.74
30 8 0.26
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.40
Consensus pattern (29 bp):
TTAAAATGATAAAATTAAACTTTAATCCC
Found at i:67233259 original size:231 final size:226
Alignment explanation
Indices: 67232867--67233318 Score: 529
Period size: 231 Copynumber: 2.0 Consensus size: 226
67232857 TTGCTTTTCT
* *
67232867 TTGTGGCTATTTCACCTAAAAAGCTAAAAAAATAAATTTATCAGTTAAATTTGATTGAAATACAT
1 TTGTGACTATTTCACCTAAAAAGCTAAAAAAATAAATTTATCAGCTAAATTTGATTGAAATACAT
* * * * *
67232932 ATAAAAAATGGAAACAGCAAAATTCCAAGATGTTCATTTTCATATGTTCTCATTCTTTTAAAATT
66 ACAAAAAATAGAAACACCAAAATTCCAAGATATTCATTTCCATATGTTCTCATTCTTTTAAAATT
* * * * * *
67232997 AACCCTCAATGTCACAAAGAATAGCAAAACTACAAAAAAGAAGATCAAATTACACAATGTGTAAA
131 AACCATCAATGTCACAAAGAAAAACAAAACT---AAAAA-AAGACCAAATTAAAAAATGTGTAAA
*
67233062 TGTTGAGGGTTAATTTTTTTTAGAATCAAGACTAAA
192 TGTTGAGGATT-ATTTTTTTTAGAATCAAGACTAAA
* * * * * *
67233098 TTGTGACTCTTTCGCCTAGAAAAGCTAACAAAGA-AAATTTATTAGCTAATTTTGATTGAAA-AT
1 TTGTGACTATTTCACCTA-AAAAGCTAA-AAAAATAAATTTATCAGCTAAATTTGATTGAAATAC
* *
67233161 ATACAAAAAATAGAAACACCAAAAAATT-CAAGATATT-AGTTTCCATCTTTTCTCATT-TTTTA
64 ATACAAAAAATAGAAACACC--AAAATTCCAAGATATTCA-TTTCCATATGTTCTCATTCTTTTA
* * *
67233223 AAATTAA-CATACAGTGTCACAAAGAAAAATAAAACTAAAAAAATACCAAATTAAAAAATGTGTA
126 AAATTAACCAT-CAATGTCACAAAGAAAAACAAAACTAAAAAAAGACCAAATTAAAAAATGTGTA
*
67233287 AATGTTGAGGATTATTTTTTTTAGAATTAAGA
190 AATGTTGAGGATTATTTTTTTTAGAATCAAGA
67233319 TTGAATTAAC
Statistics
Matches: 189, Mismatches: 26, Indels: 17
0.81 0.11 0.07
Matches are distributed among these distances:
226 18 0.10
227 31 0.16
228 5 0.03
230 2 0.01
231 67 0.35
232 56 0.30
233 10 0.05
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (226 bp):
TTGTGACTATTTCACCTAAAAAGCTAAAAAAATAAATTTATCAGCTAAATTTGATTGAAATACAT
ACAAAAAATAGAAACACCAAAATTCCAAGATATTCATTTCCATATGTTCTCATTCTTTTAAAATT
AACCATCAATGTCACAAAGAAAAACAAAACTAAAAAAAGACCAAATTAAAAAATGTGTAAATGTT
GAGGATTATTTTTTTTAGAATCAAGACTAAA
Found at i:67237242 original size:20 final size:20
Alignment explanation
Indices: 67237217--67237259 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
67237207 TTAGTCTCTA
67237217 AACCCAAAAATCAACTAACT
1 AACCCAAAAATCAACTAACT
67237237 AACCCAAAAATCAACTAACT
1 AACCCAAAAATCAACTAACT
67237257 AAC
1 AAC
67237260 ATTTCCACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.56, C:0.30, G:0.00, T:0.14
Consensus pattern (20 bp):
AACCCAAAAATCAACTAACT
Found at i:67238744 original size:21 final size:21
Alignment explanation
Indices: 67238718--67238771 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
67238708 AAGGAGGTAA
*
67238718 TTTTACATTGACTGGAAAACC
1 TTTTACATTGACGGGAAAACC
*
67238739 TTTTACATTGACGGGAAAGCC
1 TTTTACATTGACGGGAAAACC
67238760 TTTTACATTGAC
1 TTTTACATTGAC
67238772 CATCCTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (21 bp):
TTTTACATTGACGGGAAAACC
Found at i:67245567 original size:51 final size:52
Alignment explanation
Indices: 67245507--67245625 Score: 195
Period size: 51 Copynumber: 2.3 Consensus size: 52
67245497 AATGAGTACT
*
67245507 AAATTATAATTATGTTGGAACTTGGCTTTTAATTATAATAAGAAT-GGGACG
1 AAATTATAATTATGTTGGAACTTGGCTTTTAATAATAATAAGAATGGGGACG
* **
67245558 AAATTATAATTATGTTGGAACTTGTCTTTTAATAATAATACTAATGGGGACG
1 AAATTATAATTATGTTGGAACTTGGCTTTTAATAATAATAAGAATGGGGACG
67245610 AAATTATAATTATGTT
1 AAATTATAATTATGTT
67245626 TTTAAAAATT
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
51 41 0.65
52 22 0.35
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (52 bp):
AAATTATAATTATGTTGGAACTTGGCTTTTAATAATAATAAGAATGGGGACG
Found at i:67253134 original size:185 final size:181
Alignment explanation
Indices: 67252833--67253172 Score: 470
Period size: 185 Copynumber: 1.9 Consensus size: 181
67252823 TCTTGATCAG
* * * *
67252833 GCAAAAGTTAGTGAGGGTTTGTAAAGAAAAACCCTCACCGCTTTTACTTGATAGATCAAAATGTT
1 GCAAAAGTTAATGAGGGGTTGCAAAGAAAAACCCTCACCGCTTTTACTTGATAGATCAAAATATT
* *
67252898 TACTTGGTTTAATTACTTAACTCTTAAAAAGCCATAGCTAGATTCTTAGAAATAGATCTAGAAGT
66 TACTCGGTTTAATCACTTAACTCTTAAAAAGCCATAGCTAGATTCTTAGAAATAGATCTAGAAGT
67252963 TTACTCGACTCAATCACCTAGAAGGGGAAAAATTCTCTTCAACCAGGTGAA
131 TTACTCGACTCAATCACCTAGAAGGGGAAAAATTCTCTTCAACCAGGTGAA
* * * *
67253014 GCAAAAGTTAATGAGGGGTTGCAAAGGAAAGCCCTCACGGACTTTTGCTTGATAGAT-AAAGATA
1 GCAAAAGTTAATGAGGGGTTGCAAAGAAAAACCCTCACCG-CTTTTACTTGATAGATCAAA-ATA
* *
67253078 TTTACTCGGTTTAATCA-TTAAGAAACTCTTAAAAAAG-CATAGTTAGATTGTTAGAAATAGATC
64 TTTACTCGGTTTAATCACTT----AACTCTT-AAAAAGCCATAGCTAGATTCTTAGAAATAGATC
* *
67253141 TAGAAGTTTACTTGACTTAATCACCTAGAAGG
124 TAGAAGTTTACTCGACTCAATCACCTAGAAGG
67253173 AGAACCCCCC
Statistics
Matches: 138, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
181 39 0.28
182 32 0.23
185 61 0.44
186 6 0.04
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (181 bp):
GCAAAAGTTAATGAGGGGTTGCAAAGAAAAACCCTCACCGCTTTTACTTGATAGATCAAAATATT
TACTCGGTTTAATCACTTAACTCTTAAAAAGCCATAGCTAGATTCTTAGAAATAGATCTAGAAGT
TTACTCGACTCAATCACCTAGAAGGGGAAAAATTCTCTTCAACCAGGTGAA
Found at i:67259248 original size:6 final size:6
Alignment explanation
Indices: 67259237--67259262 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
67259227 CGTTGAATCT
67259237 TGAGAA TGAGAA TGAGAA TGAGAA TG
1 TGAGAA TGAGAA TGAGAA TGAGAA TG
67259263 TAGGGAGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.35, T:0.19
Consensus pattern (6 bp):
TGAGAA
Found at i:67266845 original size:179 final size:178
Alignment explanation
Indices: 67266546--67266904 Score: 673
Period size: 179 Copynumber: 2.0 Consensus size: 178
67266536 CTTGTCATCA
67266546 ATGAGTTAAATGTTGGGGGTTCAATATGGTTATTTTCTAGGGATAAAGTAACATTTAGTCTCTGA
1 ATGAGTTAAATGTTGGGGGTTCAATATGGTTATTTTCTAGGGATAAAGTAACATTTAGTCTCTGA
*
67266611 ATTTGACAATTTTTCGCAATTTGATCCATTAATTTTCTTTTGTCTATATTAGTCTCGGAACCAAA
66 ATTTGACAACTTTTCGCAATTTGATCCATTAATTTTCTTTTGTCTATATTAGTCTCGGAACCAAA
67266676 CAATCATTTCCGATCTTATCCCTGAATTTGGATTCAGTTAAGGTATTG
131 CAATCATTTCCGATCTTATCCCTGAATTTGGATTCAGTTAAGGTATTG
*
67266724 ATGAGTTAAATGTTGGGGGGTTCAATATGGTTATTTTCTAGGGATAAAGTAATATTTAGTCTCTG
1 ATGAGTTAAATGTT-GGGGGTTCAATATGGTTATTTTCTAGGGATAAAGTAACATTTAGTCTCTG
*
67266789 AATTTGACAACTTTTCGCAATTTGATCCCTTAATTTTCTTTTGTCTATATTAGTCTCGGAACCAA
65 AATTTGACAACTTTTCGCAATTTGATCCATTAATTTTCTTTTGTCTATATTAGTCTCGGAACCAA
*
67266854 GCAATCATTTCCGATCTTATCCCTGAATTTGGATTCAGTTAAGGTATTG
130 ACAATCATTTCCGATCTTATCCCTGAATTTGGATTCAGTTAAGGTATTG
67266903 AT
1 AT
67266905 AATGTGACAC
Statistics
Matches: 176, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
178 14 0.08
179 162 0.92
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (178 bp):
ATGAGTTAAATGTTGGGGGTTCAATATGGTTATTTTCTAGGGATAAAGTAACATTTAGTCTCTGA
ATTTGACAACTTTTCGCAATTTGATCCATTAATTTTCTTTTGTCTATATTAGTCTCGGAACCAAA
CAATCATTTCCGATCTTATCCCTGAATTTGGATTCAGTTAAGGTATTG
Found at i:67268250 original size:20 final size:21
Alignment explanation
Indices: 67268225--67268266 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
67268215 ATTCACAACG
67268225 TTAAA-TTCAAAGATTTTATA
1 TTAAATTTCAAAGATTTTATA
67268245 TTAAATTTCAAAGATTTTATA
1 TTAAATTTCAAAGATTTTATA
67268266 T
1 T
67268267 GTACATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (21 bp):
TTAAATTTCAAAGATTTTATA
Found at i:67276998 original size:31 final size:30
Alignment explanation
Indices: 67276951--67277020 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
67276941 TGATGAAATC
* *
67276951 CAAATTCAATGACCAAAATGGACCTAATTG
1 CAAATTCAATGACCAAAATGAAACTAATTG
*
67276981 CAAAGTTCAAGTG-CCAAAATGAAACTAATTAT
1 CAAA-TTCAA-TGACCAAAATGAAACTAATT-G
67277013 CAAATTCA
1 CAAATTCA
67277021 GGAGCTAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 4 0.12
31 24 0.71
32 6 0.18
ACGTcount: A:0.46, C:0.19, G:0.11, T:0.24
Consensus pattern (30 bp):
CAAATTCAATGACCAAAATGAAACTAATTG
Found at i:67284390 original size:23 final size:23
Alignment explanation
Indices: 67284345--67284390 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
67284335 TCAATTTTTT
*
67284345 TTAAAAAAATTTATATAAAAATA
1 TTAAAAAAATTTATAAAAAAATA
*
67284368 TTAAAAAGATTTA-AAAAATAATA
1 TTAAAAAAATTTATAAAAA-AATA
67284391 ATTTTACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
TTAAAAAAATTTATAAAAAAATA
Found at i:67285163 original size:4 final size:4
Alignment explanation
Indices: 67285154--67285189 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
67285144 TACAGACGCT
67285154 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
67285190 AACATGCTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:67285455 original size:2 final size:2
Alignment explanation
Indices: 67285450--67285476 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67285440 TGCACATATG
67285450 CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA C
67285477 GTAGATATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:67287056 original size:23 final size:23
Alignment explanation
Indices: 67287026--67287077 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
67287016 CCAACAACTT
67287026 TAACATTGACAAGCTACTAAAAG
1 TAACATTGACAAGCTACTAAAAG
67287049 TAACATTGACAAGCTACTAAAAG
1 TAACATTGACAAGCTACTAAAAG
67287072 TAACAT
1 TAACAT
67287078 GTAGAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.48, C:0.17, G:0.12, T:0.23
Consensus pattern (23 bp):
TAACATTGACAAGCTACTAAAAG
Found at i:67293494 original size:27 final size:28
Alignment explanation
Indices: 67293464--67293523 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 28
67293454 AAACAAAGAA
67293464 AAAAAATAAAGATATTA-TTTTTATCTC
1 AAAAAATAAAGATATTATTTTTTATCTC
* * *
67293491 AAAAAATAGAGATGTTATTTTTTATCTT
1 AAAAAATAAAGATATTATTTTTTATCTC
67293519 AAAAA
1 AAAAA
67293524 CGTGATTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.40
Consensus pattern (28 bp):
AAAAAATAAAGATATTATTTTTTATCTC
Found at i:67296338 original size:17 final size:17
Alignment explanation
Indices: 67296308--67296352 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
67296298 CCGATATAAT
* *
67296308 AAATATATTTATTTTTA
1 AAATATTTTTAATTTTA
67296325 AAAT-TTTTTAATTTTA
1 AAATATTTTTAATTTTA
67296341 AAATATTTTTAA
1 AAATATTTTTAA
67296353 AATACTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
AAATATTTTTAATTTTA
Found at i:67299551 original size:18 final size:19
Alignment explanation
Indices: 67299501--67299551 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
67299491 CACGCAGATG
*
67299501 GAACTCAACAACAA-ATCAA
1 GAAC-CAACAACAACAACAA
*
67299520 GAACCATCAA-AACAACAA
1 GAACCAACAACAACAACAA
67299538 GAA-CAACAACAACA
1 GAACCAACAACAACA
67299552 GATGCCACCA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
17 7 0.26
18 16 0.59
19 4 0.15
ACGTcount: A:0.61, C:0.27, G:0.06, T:0.06
Consensus pattern (19 bp):
GAACCAACAACAACAACAA
Found at i:67301790 original size:383 final size:383
Alignment explanation
Indices: 67301048--67301964 Score: 1038
Period size: 383 Copynumber: 2.4 Consensus size: 383
67301038 AAGCTAGCTG
* * *
67301048 ATACACCCTATTAAATTCGCTGTCTTATAAGTTAACTTTTGAGGTTTTAGGGTTTTAAATTTCAT
1 ATACACCCTATTAAATTCTCCGTCTTATAAGTTAACTTTTGAGGTTTTAGGGTTTTAAATCTCAT
* *
67301113 TTTAACTCGATATTAAAGCTAAGTTCCTTAAACCCTAAACCCTAAATTCTCTCGTCTTCAGGTTC
66 TTTAACTCGATATTAAAGCTAAGTTCCTTAAACCATAAACCCTAAATTCTCTCGTCTTCAAGTTC
* **
67301178 TCTTAAAGGTTGGGTTAGAATTTAAACTAGGTTCTACCTTAAACCCAAGGCCTTTTCCATCCACC
131 TCTTAAAGGTCGGGTTAGAATTTAAACTAGCATCTACC-TAAA-CCAAGGCCTTTTCCATCCACC
* * * * **
67301243 AAGTAAACTTCTATCGAAGATCTTTATCTTTCGTAATGGTTGGTAGCGTATTGGTTTTAAAGTAA
194 AAGTAAACTTCTATCGAACATCCTTATCTTTCATAATGGTTGGTACCGTATCAGTTTTAAAGTAA
* *
67301308 AACGAAACGAGCACGATCATGTTATACGCCCACTAGCATGACACCAAACTACTTTAGTTTCTTCT
259 AACGAAACGAGCACCATCATGTTATACGCCCACTAGCACGACACCAAACTACTTTAGTTTCTTCT
* *
67301373 GCAACAAGTAAAAGGTTTGCAGTAATACAAATAGGGCAAGATTAACACCGAGTATAACTT
324 GCAACAAGAAAAAAGTTTGCAGTAATACAAATAGGGCAAGATTAACACCGAGTATAACTT
*
67301433 ATACACTACCCTAATAAATTCTCCGTCTTATAA-TTAACTTTTGAGGTTTTAGGGTTTT-AATCT
1 AT--AC-ACCCTATTAAATTCTCCGTCTTATAAGTTAACTTTTGAGGTTTTAGGGTTTTAAATCT
* * *
67301496 CTTTTTAACTCGATATTAAA-CTAGGTT-CTGTAAACCATAAACCCTAGATTCTCTCGTCTTCAA
63 CATTTTAACTCGATATTAAAGCTAAGTTCCT-TAAACCATAAACCCTAAATTCTCTCGTCTTCAA
* * * * * * *
67301559 G-TCT-TT-AAGGTCGGGTTAGAGTTTGCACCTA-CATGTAGC-AGA-GAAGGCCTTTAATTTCC
127 GTTCTCTTAAAGGTCGGGTTAGAATTT-AAACTAGCATCTACCTAAACCAAGGCC--T--TTTCC
* * *
67301618 ATCCTCCAAGTAAACTTTTATCGAACATCCTTGTC-TTCTATAATGGTTGGTACCGTATCAGTTT
187 ATCCACCAAGTAAACTTCTATCGAACATCCTTATCTTTC-ATAATGGTTGGTACCGTATCAGTTT
* * **
67301682 TAAAGTAAAAAC-AATAC-AGCAACCATCATGTTATATGCCCACTAGCACGATACTGAACTACTT
251 TAAAGT-AAAACGAA-ACGAGC-ACCATCATGTTATACGCCCACTAGCACGACACCAAACTACTT
* **
67301745 TAGTTTCTTTTGCAACAAGAAAAAAGTTTGCAG-AGATACAAATAGGGCAAGATTCGCACCGAGT
313 TAGTTTCTTCTGCAACAAGAAAAAAGTTTGCAGTA-ATACAAATAGGGCAAGATTAACACCGAGT
67301809 ATAACTT
377 ATAACTT
* ** * * * ** *
67301816 ATACACCCTATTAAATTCTCCATCTTATATAAGCAAACCTTTGATG-TTCAGGGTTTTACTTTTC
1 ATACACCCTATTAAATTCTCCGTC-T-TATAAGTTAACTTTTGAGGTTTTAGGGTTTTAAATCTC
* ** * * **
67301880 -TTTTAACTCAATATTAAAGCTAAGTTCCTTAAATTATAAACCCTAACTTCTCTTGTCTTCGGGT
64 ATTTTAACTCGATATTAAAGCTAAGTTCCTTAAACCATAAACCCTAAATTCTCTCGTCTTCAAGT
* * *
67301944 TGTCTTTAAGGTCAGGTTAGA
129 TCTCTTAAAGGTCGGGTTAGA
67301965 GTTTGACTTG
Statistics
Matches: 449, Mismatches: 60, Indels: 45
0.81 0.11 0.08
Matches are distributed among these distances:
378 6 0.01
380 21 0.05
381 6 0.01
382 120 0.27
383 160 0.36
384 9 0.02
385 41 0.09
386 36 0.08
387 27 0.06
388 23 0.05
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (383 bp):
ATACACCCTATTAAATTCTCCGTCTTATAAGTTAACTTTTGAGGTTTTAGGGTTTTAAATCTCAT
TTTAACTCGATATTAAAGCTAAGTTCCTTAAACCATAAACCCTAAATTCTCTCGTCTTCAAGTTC
TCTTAAAGGTCGGGTTAGAATTTAAACTAGCATCTACCTAAACCAAGGCCTTTTCCATCCACCAA
GTAAACTTCTATCGAACATCCTTATCTTTCATAATGGTTGGTACCGTATCAGTTTTAAAGTAAAA
CGAAACGAGCACCATCATGTTATACGCCCACTAGCACGACACCAAACTACTTTAGTTTCTTCTGC
AACAAGAAAAAAGTTTGCAGTAATACAAATAGGGCAAGATTAACACCGAGTATAACTT
Found at i:67304992 original size:29 final size:30
Alignment explanation
Indices: 67304934--67304996 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
67304924 AGTTTACGAG
* * *
67304934 AATTGGATTAAATCAAAATTTTATATATAA
1 AATTGCATAAAATCAAAAATTTATATATAA
*
67304964 AATTGCATAAAATCAAAAATTT-TGTATAA
1 AATTGCATAAAATCAAAAATTTATATATAA
67304993 AATT
1 AATT
67304997 ACAATTTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.51, C:0.05, G:0.06, T:0.38
Consensus pattern (30 bp):
AATTGCATAAAATCAAAAATTTATATATAA
Found at i:67309075 original size:31 final size:30
Alignment explanation
Indices: 67309037--67309129 Score: 93
Period size: 31 Copynumber: 3.1 Consensus size: 30
67309027 TTGGTCTAGA
67309037 TACCAAATTGAACATTAAATCCAAACTCAGG
1 TACCAAATTGAACATTAAA-CCAAACTCAGG
* *
67309068 TACCAAATTGGAACA--AAA-AAAACTTAGG
1 TACCAAATT-GAACATTAAACCAAACTCAGG
* * *
67309096 TACCAAATTGAATATTGAAGCCAAACACAGG
1 TACCAAATTGAACATT-AAACCAAACTCAGG
67309127 TAC
1 TAC
67309130 TAATGGTATA
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
27 4 0.08
28 17 0.34
30 5 0.10
31 19 0.38
32 5 0.10
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.20
Consensus pattern (30 bp):
TACCAAATTGAACATTAAACCAAACTCAGG
Found at i:67310913 original size:2 final size:2
Alignment explanation
Indices: 67310906--67310951 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
67310896 TGTCTATTTC
67310906 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
67310948 AG AG
1 AG AG
67310952 TGTGTGTGTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:67312609 original size:362 final size:358
Alignment explanation
Indices: 67311772--67312652 Score: 1236
Period size: 362 Copynumber: 2.5 Consensus size: 358
67311762 TTTCCTTCCC
67311772 CCTAGGTTACAAATTCATAAGTATAGCTCCAATTAAACTCAAAACAGAGATCAATCTCATCATAG
1 CCTAGGTTACAAA-TCATAAGTATAGCTCCAATTAAACTCAAAACAGAGATCAATCTCATCATAG
* * * * *
67311837 CTAT-GAATTTAAATTATCTTATTCCGT--GATTTCCAAGCAAACAAACGGAGCATAAAGTTACA
65 CT-TCGAATTTAAAATA-CCTAATCC-TACAATTTCCAACCAAACAAAC-GAGCATAAAGTTACA
* * * *
67311899 AATTGC-AATCTACAACAATTTCATTAATCCTGAATC--CAAAACTTCTCCATCCTGAAGCTAAG
126 AATTCCAAATCTACAATAATTTCATTAATCCTGAATCTAGAAAACTTATCCATCCTGAAGCTAAG
* ** * *
67311961 TAATAAACAATCCAAAACATTATCTCTATGCATGCACTTTTACTTAAAATTCAGTATTAAACCTT
191 TAATAAACAATCCAAAACATAATCTCTACACATGCACTTCTACTTAAAATTCAGTATTAAAACTT
* * * * *
67312026 ACTAGAAGATAATTCAACTACATTCTACATTTCATCATCTTCATTATTCACTCCACATCCAACAT
256 ACTAAAAGATAATTCAACTACATTCTACATTTAATCATCCTCATCATTCAATCCACATCCAACAT
*
67312091 TTCTCTAAGCACATGCATTTTACAATGTTGATTTCATT
321 TTCTCTAAGCACATGCATTTTACAATGTTGATTCCATT
*
67312129 CCTAGGTT----A-CATAAGTATA-----ACTTAAACTCAAAACAGAGATCAATCTCATCATAGC
1 CCTAGGTTACAAATCATAAGTATAGCTCCAATTAAACTCAAAACAGAGATCAATCTCATCATAGC
* * *
67312184 TTCAAATTCAAAATACCTAATTCTACAATTTCCAACCAAACAAACGTAGCATAAAGTTACAAATT
66 TTCGAATTTAAAATACCTAATCCTACAATTTCCAACCAAACAAACG-AGCATAAAGTTACAAATT
*
67312249 CCAAATCTACAATAATTTCATTAATCCTGAATCTAGAAAACTTATCCATCCTGGAGCTAAGTAAT
130 CCAAATCTACAATAATTTCATTAATCCTGAATCTAGAAAACTTATCCATCCTGAAGCTAAGTAAT
* *
67312314 AAACGATCCAAAACATAATTTCTACACATGCACTTCTACTTAAAATTCAGTATTAAAACTCTACT
195 AAACAATCCAAAACATAATCTCTACACATGCACTTCTACTTAAAATTCAGTATTAAAACT-TACT
*
67312379 AAAAGATAGTTCAACTACATTCTACATTTAATCATCCTCATCATTCAATCCACATCCAACATTTC
259 AAAAGATAATTCAACTACATTCTACATTTAATCATCCTCATCATTCAATCCACATCCAACATTTC
* *
67312444 TCTAAGCACATGCATTTTACAGTGTGTGGTTCCATT
324 TCTAAGCACATGCATTTTACAATGT-TGATTCCATT
* *
67312480 CCTAGGTTACAAACTCATAAGTATAGCTCCAATTATACTCAAAGCAGAGATCAATCTCATCATAG
1 CCTAGGTTACAAA-TCATAAGTATAGCTCCAATTAAACTCAAAACAGAGATCAATCTCATCATAG
* *
67312545 CTTCGAATTTAAAATACCTAATCCTACAATTTCCAACCAAAAAAACAGAGCATAGAGTTACAAAT
65 CTTCGAATTTAAAATACCTAATCCTACAATTTCCAACCAAACAAAC-GAGCATAAAGTTACAAAT
* *
67312610 TTCAAATCTGCAATAATTTCATTAATCCTGAATCTAGAAAACT
129 TCCAAATCTACAATAATTTCATTAATCCTGAATCTAGAAAACT
67312653 AGTCTATCCT
Statistics
Matches: 463, Mismatches: 40, Indels: 37
0.86 0.07 0.07
Matches are distributed among these distances:
344 1 0.00
345 7 0.02
346 81 0.17
347 29 0.06
349 80 0.17
350 87 0.19
351 26 0.06
353 1 0.00
355 1 0.00
357 18 0.04
362 131 0.28
363 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (358 bp):
CCTAGGTTACAAATCATAAGTATAGCTCCAATTAAACTCAAAACAGAGATCAATCTCATCATAGC
TTCGAATTTAAAATACCTAATCCTACAATTTCCAACCAAACAAACGAGCATAAAGTTACAAATTC
CAAATCTACAATAATTTCATTAATCCTGAATCTAGAAAACTTATCCATCCTGAAGCTAAGTAATA
AACAATCCAAAACATAATCTCTACACATGCACTTCTACTTAAAATTCAGTATTAAAACTTACTAA
AAGATAATTCAACTACATTCTACATTTAATCATCCTCATCATTCAATCCACATCCAACATTTCTC
TAAGCACATGCATTTTACAATGTTGATTCCATT
Found at i:67314734 original size:2 final size:2
Alignment explanation
Indices: 67314727--67314759 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
67314717 CATGTTTTAT
67314727 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
67314760 TTATTATGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:67323940 original size:19 final size:18
Alignment explanation
Indices: 67323918--67323969 Score: 50
Period size: 19 Copynumber: 2.8 Consensus size: 18
67323908 ATATTTATAT
67323918 AAATTTTTAAAAATTAAGA
1 AAATTTTTAAAAATTAA-A
* * *
67323937 AAATTCTTAAATATTTAA
1 AAATTTTTAAAAATTAAA
*
67323955 AAATATTTAATAAAT
1 AAATTTTTAA-AAAT
67323970 AGTTAGGAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
18 9 0.35
19 17 0.65
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (18 bp):
AAATTTTTAAAAATTAAA
Found at i:67324516 original size:216 final size:216
Alignment explanation
Indices: 67324141--67324616 Score: 738
Period size: 216 Copynumber: 2.2 Consensus size: 216
67324131 CACCAATTTC
* * * * *
67324141 TGGTTCAACTAGTTTAATTAGTTGGTCCGATTGATTTCCAACAATTATATATACATCGGTTAATA
1 TGGTTCAACTAGTTAAATCAGTCGGTCCAATTGATTTCCAACAATTATACATACATCGGTTAATA
* * ** *
67324206 ATTCTATAAAAATAACTAATAAGGTTTTGGAGCTTTGAGATCCTAAATTCGAATTCCACCCAAAT
66 ATTATATAAAAATAACTAATAAGGCTTTGGAAATTTGAGACCCTAAATTCGAATTCCACCCAAAT
* *
67324271 TTTCTGAATCCTTCTAAATGTGTAAATTAAAGTAGGGAGGTTAGTCTCTAGTTTCAACATAATTA
131 TCTCTGAATCCTTCTAAATGTGCAAATTAAAGTAGGGAGGTTAGTCTCTAGTTTCAACATAATTA
* * *
67324336 AAGGGGCTAACCTCGTCATTA
196 AAGGGACTAACCTCATAATTA
*
67324357 TGGTTCAACTAGTTAAATCAGTCGGTCCAATTGATTTCCAACAATTATACATACATCGGTTCATA
1 TGGTTCAACTAGTTAAATCAGTCGGTCCAATTGATTTCCAACAATTATACATACATCGGTTAATA
* *
67324422 ATTATATAAAAATAACTTATAAGGCTTTGGAAATTTGAGACCCTAAATTCGAGTTCCACCCAAAG
66 ATTATATAAAAATAACTAATAAGGCTTTGGAAATTTGAGACCCTAAATTCGAATTCCACCCAAA-
* *
67324487 TTCTC-GAATCTTTCTAAGTGTGCAAATTAAAGTAGGGAGGTTAGTCTCTAGTTTCAACATAATT
130 TTCTCTGAATCCTTCTAAATGTGCAAATTAAAGTAGGGAGGTTAGTCTCTAGTTTCAACATAATT
*
67324551 AAAGTGACTAACCTCATAATTA
195 AAAGGGACTAACCTCATAATTA
*
67324573 TGGTTCAACTAGTTCAATCAGTCGGTCCAATTGATTTCCAACAA
1 TGGTTCAACTAGTTAAATCAGTCGGTCCAATTGATTTCCAACAA
67324617 CAATAAAGCT
Statistics
Matches: 237, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
216 233 0.98
217 4 0.02
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (216 bp):
TGGTTCAACTAGTTAAATCAGTCGGTCCAATTGATTTCCAACAATTATACATACATCGGTTAATA
ATTATATAAAAATAACTAATAAGGCTTTGGAAATTTGAGACCCTAAATTCGAATTCCACCCAAAT
TCTCTGAATCCTTCTAAATGTGCAAATTAAAGTAGGGAGGTTAGTCTCTAGTTTCAACATAATTA
AAGGGACTAACCTCATAATTA
Found at i:67324966 original size:3 final size:3
Alignment explanation
Indices: 67324958--67324999 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
67324948 TTGCAGCTTT
*
67324958 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ACC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
67325000 GAATTCTTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.31
Consensus pattern (3 bp):
ATC
Found at i:67339599 original size:31 final size:31
Alignment explanation
Indices: 67339563--67339651 Score: 160
Period size: 31 Copynumber: 2.9 Consensus size: 31
67339553 TAGGAATAAA
67339563 TAGGGGTAATTTAGGTATTAGAAGTTACGAG
1 TAGGGGTAATTTAGGTATTAGAAGTTACGAG
67339594 TAGGGGTAATTTAGGTATTAGAAGTTACGAG
1 TAGGGGTAATTTAGGTATTAGAAGTTACGAG
* *
67339625 TAGGGGTAATTTTGGTATTAAAAGTTA
1 TAGGGGTAATTTAGGTATTAGAAGTTA
67339652 AGGGTAATTT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 56 1.00
ACGTcount: A:0.33, C:0.02, G:0.30, T:0.35
Consensus pattern (31 bp):
TAGGGGTAATTTAGGTATTAGAAGTTACGAG
Found at i:67341831 original size:22 final size:22
Alignment explanation
Indices: 67341801--67341843 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
67341791 CCTTTATGGA
*
67341801 TTTAGTATGCAAACCCCATATT
1 TTTAATATGCAAACCCCATATT
* *
67341823 TTTAATATGCAATCCCTATAT
1 TTTAATATGCAAACCCCATAT
67341844 ACACGAACCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.40
Consensus pattern (22 bp):
TTTAATATGCAAACCCCATATT
Found at i:67341878 original size:15 final size:15
Alignment explanation
Indices: 67341847--67342045 Score: 161
Period size: 15 Copynumber: 13.5 Consensus size: 15
67341837 CCTATATACA
* *
67341847 CGAACCCTGTATATG
1 CGAACCCTATATGTG
*
67341862 CGAACCCTACATGTG
1 CGAACCCTATATGTG
* *
67341877 CGAACTCTACATGTG
1 CGAACCCTATATGTG
* *
67341892 CGAACACTATAGGTG
1 CGAACCCTATATGTG
*
67341907 CGAACCCTACATGTG
1 CGAACCCTATATGTG
*
67341922 CGAACCC-ATATGCG
1 CGAACCCTATATGTG
* * * *
67341936 CGAATCTTGTAGGTG
1 CGAACCCTATATGTG
*
67341951 CGAACCC-ATATGTA
1 CGAACCCTATATGTG
* *
67341965 CGAACCCTGTAGGTG
1 CGAACCCTATATGTG
*
67341980 CGAACCC-ATATGTA
1 CGAACCCTATATGTG
*
67341994 CGAACCCTATAGGTG
1 CGAACCCTATATGTG
* *
67342009 TGAACCCTGTATGTG
1 CGAACCCTATATGTG
* ** *
67342024 GGAACTTTATAAGTG
1 CGAACCCTATATGTG
67342039 CGAACCC
1 CGAACCC
67342046 CTCGTGTGAA
Statistics
Matches: 140, Mismatches: 41, Indels: 6
0.75 0.22 0.03
Matches are distributed among these distances:
14 32 0.23
15 108 0.77
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (15 bp):
CGAACCCTATATGTG
Found at i:67341881 original size:30 final size:29
Alignment explanation
Indices: 67341847--67342015 Score: 149
Period size: 29 Copynumber: 5.8 Consensus size: 29
67341837 CCTATATACA
* *
67341847 CGAACCCTGTATATGCGAACCCTACATGTG
1 CGAACCCTGTATGTGCGAACCC-ATATGTG
* ** * *
67341877 CGAACTCTACATGTGCGAACACTATAGGTG
1 CGAACCCTGTATGTGCGAAC-CCATATGTG
** *
67341907 CGAACCCTACATGTGCGAACCCATATGCG
1 CGAACCCTGTATGTGCGAACCCATATGTG
* * * *
67341936 CGAATCTTGTAGGTGCGAACCCATATGTA
1 CGAACCCTGTATGTGCGAACCCATATGTG
* *
67341965 CGAACCCTGTAGGTGCGAACCCATATGTA
1 CGAACCCTGTATGTGCGAACCCATATGTG
* * *
67341994 CGAACCCTATAGGTGTGAACCC
1 CGAACCCTGTATGTGCGAACCC
67342016 TGTATGTGGG
Statistics
Matches: 116, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
29 75 0.65
30 40 0.34
31 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (29 bp):
CGAACCCTGTATGTGCGAACCCATATGTG
Done.