Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 25 of 230
Found at i:6867991 original size:16 final size:16
Alignment explanation
Indices: 6867955--6867992 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
6867945 AATTATATTC
6867955 AATAATTTTATAGATT
1 AATAATTTTATAGATT
*
6867971 TATAATTTTATTA-ATT
1 AATAATTTTA-TAGATT
6867987 AATAAT
1 AATAAT
6867993 ATATTATGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 17 0.89
17 2 0.11
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
AATAATTTTATAGATT
Found at i:6868070 original size:16 final size:16
Alignment explanation
Indices: 6868049--6868111 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
6868039 TTAATTAATT
6868049 TCACATTAATATATTA
1 TCACATTAATATATTA
*
6868065 TCACATTAAT-TAATA
1 TCACATTAATATATTA
* *
6868080 TTA-ATT-TTATTATTA
1 TCACATTAATA-TATTA
6868095 TCACA-TAATAATATTA
1 TCACATTAAT-ATATTA
6868111 T
1 T
6868112 TAAATTATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
13 1 0.03
14 3 0.08
15 13 0.36
16 18 0.50
17 1 0.03
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
TCACATTAATATATTA
Found at i:6868572 original size:17 final size:18
Alignment explanation
Indices: 6868550--6868583 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6868540 TACTTAGAAT
6868550 TCTATTCAAA-TAATAAC
1 TCTATTCAAATTAATAAC
*
6868567 TCTATTTAAATTAATAA
1 TCTATTCAAATTAATAA
6868584 AATTAGCACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (18 bp):
TCTATTCAAATTAATAAC
Found at i:6870702 original size:14 final size:15
Alignment explanation
Indices: 6870671--6870704 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
6870661 TAATATTTTT
6870671 AATTATTTCAAAAAA
1 AATTATTTCAAAAAA
*
6870686 AATTATTT-AAAAGA
1 AATTATTTCAAAAAA
6870700 AATTA
1 AATTA
6870705 ATATGGTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (15 bp):
AATTATTTCAAAAAA
Found at i:6872081 original size:19 final size:19
Alignment explanation
Indices: 6872030--6872081 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
6872020 CAATTAATTT
6872030 TAAAATTATAAAAATATTCA
1 TAAAATTA-AAAAATATTCA
* * * *
6872050 AAAAAATATAAAATGTTCA
1 TAAAATTAAAAAATATTCA
6872069 TAAAATTAAAAAA
1 TAAAATTAAAAAA
6872082 AGTAGTATGA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (19 bp):
TAAAATTAAAAAATATTCA
Found at i:6873478 original size:17 final size:17
Alignment explanation
Indices: 6873439--6873476 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
6873429 TTAATTTTTT
*
6873439 AAAATTTAAAATATATA
1 AAAAATTAAAATATATA
6873456 AAAAATTAAAAT-TATA
1 AAAAATTAAAATATATA
6873472 AAAAA
1 AAAAA
6873477 ATATTTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAATTAAAATATATA
Found at i:6881671 original size:6 final size:6
Alignment explanation
Indices: 6881660--6881702 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
6881650 GAGGAAGGCT
* *
6881660 TGGGGC TGGGGC TGTGGC TGGGGC TGGGGC TGGGGC TGCGGC T
1 TGGGGC TGGGGC TGGGGC TGGGGC TGGGGC TGGGGC TGGGGC T
6881703 CCTCTTGCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.19, G:0.60, T:0.21
Consensus pattern (6 bp):
TGGGGC
Found at i:6885327 original size:22 final size:23
Alignment explanation
Indices: 6885296--6885348 Score: 81
Period size: 22 Copynumber: 2.3 Consensus size: 23
6885286 ATATATAAAC
*
6885296 GTATACTAAAAAACCTATGTGCAT
1 GTATA-TAAAAAACCTATGCGCAT
6885320 -TATATAAAAAACCTATGCGCAT
1 GTATATAAAAAACCTATGCGCAT
6885342 GTATATA
1 GTATATA
6885349 CAGTAGTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 17 0.63
23 10 0.37
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.30
Consensus pattern (23 bp):
GTATATAAAAAACCTATGCGCAT
Found at i:6885415 original size:23 final size:25
Alignment explanation
Indices: 6885389--6885435 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
6885379 AATATCATAG
*
6885389 AAATAATAACA-T-TAAAAAAAATT
1 AAATAATAAAACTGTAAAAAAAATT
*
6885412 AAATAGTAAAACTGTAAAAAAAAT
1 AAATAATAAAACTGTAAAAAAAAT
6885436 GGACTAGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.23
Consensus pattern (25 bp):
AAATAATAAAACTGTAAAAAAAATT
Found at i:6887048 original size:44 final size:43
Alignment explanation
Indices: 6886924--6887360 Score: 505
Period size: 44 Copynumber: 9.9 Consensus size: 43
6886914 ACCTGCTATA
* * *
6886924 TTTGATCTACTTTATGCCAATACATGAAGACAAGATCCGCTTGC
1 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT-C
* * * *** *
6886968 TTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGATATC
1 TTTGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCT-TC
* *
6887013 TTCGATCTACTTCACGCCAATACATGAAGACAAGATATGCTTTC
1 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGC-TTC
*
6887057 TTTAATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTGC
1 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT-C
* * * * ***
6887101 TTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATC
1 TTTGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCT-TC
6887146 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
1 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGC-TTC
*
6887190 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTC
1 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTG-CTTC
* * *
6887234 TTTGATCTACTTCACACCAATACATGAAGACAAGATCCGCTTGT
1 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT-C
6887278 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATC
1 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT-TC
* * * * *
6887322 TTTGATCAATTTCACTGCCAGTACAAGAAGATAAGATCT
1 TTTGATCTACTTCAC-GCCAATACATGAAGACAAGATCT
6887361 AATGGCTTCA
Statistics
Matches: 334, Mismatches: 48, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
43 4 0.01
44 236 0.71
45 92 0.28
46 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (43 bp):
TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTC
Found at i:6887166 original size:133 final size:133
Alignment explanation
Indices: 6886924--6887360 Score: 635
Period size: 133 Copynumber: 3.3 Consensus size: 133
6886914 ACCTGCTATA
* * *
6886924 TTTGATCTACTTTATGCCAATACATGAAGACAAGATCCGCTTGCTTCGATCTACTTCGCCACCAA
1 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTGCTTCGATCTACTTCGCCACCAA
* * *
6886989 TATGGGAAGACAAGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATATGCT
66 TATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
6887054 TTC
131 TTC
* *
6887057 TTTAATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTGCTTCGATCTACTTCGCCACCAG
1 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTGCTTCGATCTACTTCGCCACCAA
6887122 TATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
66 TATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
6887187 TTC
131 TTC
* * * *
6887190 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTTTGATCTACTTC-ACACCAA
1 TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTGCTTCGATCTACTTCGCCACCAA
*** * *
6887254 TACATGAAGACAAGATCCGCT-TGTTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
66 TATGGGAAGACAAGATCTGCTAT-CTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
*
6887318 TATC
130 TTTC
* * * * *
6887322 TTTGATCAATTTCACTGCCAGTACAAGAAGATAAGATCT
1 TTTGATCTACTTCAC-GCCAATACATGAAGACAAGATCT
6887361 AATGGCTTCA
Statistics
Matches: 277, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
131 1 0.00
132 78 0.28
133 198 0.71
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (133 bp):
TTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTGCTTCGATCTACTTCGCCACCAA
TATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
TTC
Found at i:6887842 original size:265 final size:262
Alignment explanation
Indices: 6887363--6888144 Score: 1215
Period size: 265 Copynumber: 3.0 Consensus size: 262
6887353 TAAGATCTAA
6887363 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
1 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCT-C-CT
* *
6887428 ACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCATTGTTGCCCAGGGAAGTAGAATT
64 ACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATT
** * * * *
6887493 GTTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCATTGATCTGCTCCA
129 ACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCA
*
6887558 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAA
194 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTACCCAGGGAAGTAGAA
6887623 TTAC
259 TTAC
* * * *
6887627 TGGCTTTAATGTACTCCACTGTAACTACAGGGAGGTAAAATTCACCATCTTCGATCTGCT-TTAC
1 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCTAC
* * *
6887691 TGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAA
66 TG-CT-TG--GGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAA
* *
6887756 TTACCGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTT
127 TTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTC
*
6887821 CACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCATTGCTACCCAGGGAAGTAG
192 CACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTACCCAGGGAAGTAG
6887886 AATTAC
257 AATTAC
* *
6887892 TAGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
1 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCT-C-CT
*
6887957 ACTGCTTGGGGAGACAAGATTTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATT
64 ACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATT
6888022 ACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCA
129 ACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCA
* * * * ** * *
6888087 CTACTGCTTGGGGAGACAAGATCTGAAATCTTCAACCTGCTCCACTGCAACCGAGGGA
194 CTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTACCCAGGGA
6888145 GGCGAGGTTG
Statistics
Matches: 471, Mismatches: 40, Indels: 14
0.90 0.08 0.03
Matches are distributed among these distances:
261 5 0.01
262 2 0.00
263 2 0.00
264 222 0.47
265 231 0.49
266 2 0.00
267 2 0.00
268 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (262 bp):
TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCTAC
TGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTAC
TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
ACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTACCCAGGGAAGTAGAATT
AC
Found at i:6888177 original size:132 final size:132
Alignment explanation
Indices: 6887363--6888121 Score: 1209
Period size: 132 Copynumber: 5.7 Consensus size: 132
6887353 TAAGATCTAA
6887363 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
1 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
* *
6887428 ACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCATTGTTGCCCAGGGAAGTAGAATT
66 ACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATT
**
6887493 GT
131 AC
* * * *
6887495 TGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCATTGATCTGCTCCACT
1 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
* * *
6887560 ACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATT
66 ACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATT
6887625 AC
131 AC
* * * *
6887627 TGGCTTTAATGTACTCCACTGTAACTACAGGGAGGTAAAATTCACCATCTTCGATCTGCT---TT
1 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
* * *
6887689 ACTGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAG
66 ACTG-CT-TG--GGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAG
6887754 AATTAC
127 AATTAC
* *
6887760 CGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTTCACT
1 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
* * * * *
6887825 ACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCATTGCTACCCAGGGAAGTAGAATT
66 ACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATT
6887890 AC
131 AC
* *
6887892 TAGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
1 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
*
6887957 ACTGCTTGGGGAGACAAGATTTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATT
66 ACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATT
6888022 AC
131 AC
6888024 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
1 TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
6888089 ACTGCTTGGGGAGACAAGATCTGAAATCTTCAA
66 ACTGCTTGGGGAGACAAGATCTGAAATCTTCAA
6888122 CCTGCTCCAC
Statistics
Matches: 569, Mismatches: 51, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
129 5 0.01
130 2 0.00
131 1 0.00
132 443 0.78
133 110 0.19
134 1 0.00
135 2 0.00
136 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
TGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACT
ACTGCTTGGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATT
AC
Found at i:6889446 original size:14 final size:13
Alignment explanation
Indices: 6889427--6889467 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
6889417 TTAGCCTCTC
*
6889427 CATTTTTACCTTTT
1 CATTTTT-CATTTT
6889441 CATTTTTCATTTT
1 CATTTTTCATTTT
6889454 CATCTTTTCATTTT
1 CAT-TTTTCATTTT
6889468 TCACATCACT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 8 0.32
14 17 0.68
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.66
Consensus pattern (13 bp):
CATTTTTCATTTT
Found at i:6889451 original size:21 final size:21
Alignment explanation
Indices: 6889427--6889470 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
6889417 TTAGCCTCTC
*
6889427 CATTTTTACCTTTTCATTTTT
1 CATTTTCACCTTTTCATTTTT
*
6889448 CATTTTCATCTTTTCATTTTT
1 CATTTTCACCTTTTCATTTTT
6889469 CA
1 CA
6889471 CATCACTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (21 bp):
CATTTTCACCTTTTCATTTTT
Found at i:6889453 original size:6 final size:7
Alignment explanation
Indices: 6889437--6889470 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
6889427 CATTTTTACC
6889437 TTTTCAT
1 TTTTCAT
6889444 TTTTCA-
1 TTTTCAT
6889450 TTTTCAT
1 TTTTCAT
6889457 CTTTTCAT
1 -TTTTCAT
6889465 TTTTCA
1 TTTTCA
6889471 CATCACTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.24
7 12 0.48
8 7 0.28
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (7 bp):
TTTTCAT
Found at i:6892745 original size:41 final size:41
Alignment explanation
Indices: 6892688--6892955 Score: 446
Period size: 41 Copynumber: 6.5 Consensus size: 41
6892678 TTTAACATAT
* * *
6892688 TCACCAGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
6892729 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
* *
6892770 TCACCGGCACTTAGCCTGATAGGTTTATAACTTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
*
6892811 TCACCGGCACTTAGTCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
*
6892852 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
* *
6892893 TCACCGACACTTAGCCTGCTAGGTTTATAACCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
*
6892934 TCACCGACACTTAGCCTGCTAG
1 TCACCGGCACTTAGCCTGCTAG
6892956 ACTTAAAGTC
Statistics
Matches: 216, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 216 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
Found at i:6892979 original size:41 final size:41
Alignment explanation
Indices: 6892893--6893019 Score: 109
Period size: 41 Copynumber: 3.1 Consensus size: 41
6892883 CTGATTTAGA
** * **
6892893 TCACCGACACTTAGCCTGCTAGGTTTATAA--CCTGATTTAGA
1 TCACCGACACTTAGCCTGCTAGACTTA-AAGTCC-GAATTATT
6892934 TCACCGACACTTAGCCTGCTAGACTTAAAGTCCGAATTATT
1 TCACCGACACTTAGCCTGCTAGACTTAAAGTCCGAATTATT
* * * *
6892975 TCACC-AGCA-TCAAGCCTGCTAGACATAAAGTCTGAAGTATT
1 TCACCGA-CACT-TAGCCTGCTAGACTTAAAGTCCGAATTATT
6893016 TCAC
1 TCAC
6893020 TGGCAATAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
40 4 0.05
41 67 0.92
42 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (41 bp):
TCACCGACACTTAGCCTGCTAGACTTAAAGTCCGAATTATT
Found at i:6894760 original size:28 final size:28
Alignment explanation
Indices: 6894729--6894785 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 28
6894719 TATGTTTGTT
6894729 TTTATTATTATAA-CTTTATAATATATTA
1 TTTATTATTATAACCTTTATAAT-TATTA
6894757 TTTATTATTATAACCTTTATAATTATTA
1 TTTATTATTATAACCTTTATAATTATTA
6894785 T
1 T
6894786 AAAAACTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (28 bp):
TTTATTATTATAACCTTTATAATTATTA
Found at i:6894775 original size:15 final size:14
Alignment explanation
Indices: 6894729--6894782 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
6894719 TATGTTTGTT
*
6894729 TTTATTATTATAAC
1 TTTATAATTATAAC
*
6894743 TTTATAATATATTA-
1 TTTATAAT-TATAAC
*
6894757 TTTATTATTATAACC
1 TTTATAATTATAA-C
6894772 TTTATAATTAT
1 TTTATAATTAT
6894783 TATAAAAACT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
13 4 0.12
14 14 0.44
15 14 0.44
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTATAATTATAAC
Found at i:6895568 original size:19 final size:19
Alignment explanation
Indices: 6895544--6895589 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
6895534 AACGGTGTCT
* *
6895544 AATGCATATG-ATGTAATG
1 AATGCAAATGCATGAAATG
6895562 AAATGCAAATGCATGAAATG
1 -AATGCAAATGCATGAAATG
6895582 AATGCAAA
1 AATGCAAA
6895590 AAGAGACGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.48, C:0.09, G:0.20, T:0.24
Consensus pattern (19 bp):
AATGCAAATGCATGAAATG
Found at i:6896041 original size:16 final size:16
Alignment explanation
Indices: 6896020--6896050 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6896010 TTCTATAACG
6896020 AAATGCCATGCAGTCT
1 AAATGCCATGCAGTCT
*
6896036 AAATGCTATGCAGTC
1 AAATGCCATGCAGTC
6896051 AATGTGAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (16 bp):
AAATGCCATGCAGTCT
Found at i:6897811 original size:22 final size:23
Alignment explanation
Indices: 6897780--6897832 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
6897770 ATATATAAAC
*
6897780 GTATACTAAAAAACATATGTGCAT
1 GTATA-TAAAAAACATATGCGCAT
*
6897804 -TATATAAAAAACCTATGCGCAT
1 GTATATAAAAAACATATGCGCAT
6897826 GTATATA
1 GTATATA
6897833 CAGTAGTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 16 0.62
23 10 0.38
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.30
Consensus pattern (23 bp):
GTATATAAAAAACATATGCGCAT
Found at i:6900626 original size:71 final size:70
Alignment explanation
Indices: 6900521--6900658 Score: 206
Period size: 71 Copynumber: 2.0 Consensus size: 70
6900511 TAAACTGACA
* * *
6900521 ATAGGTGTCCTTGCACTAGTTGAATAAACTGACAATGTTTTGCGCCCAACGCTAGTCAGACAAAT
1 ATAGGTGTCCCTGCACTAGTAGAATAAACCGACAATGTTTTGCGCCCAACGCTAGTCAGACAAAT
6900586 TGGTG
66 TGGTG
* *
6900591 ATAGGTGTGCCCTGCACTAGTCAG-ATAAACCGACAATGTTTTGCGCCCAGCGCTAGTCAGATAA
1 ATAGGTGT-CCCTGCACTAGT-AGAATAAACCGACAATGTTTTGCGCCCAACGCTAGTCAGACAA
6900655 ATTG
64 ATTG
6900659 ACGATATCGA
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
70 8 0.13
71 52 0.85
72 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (70 bp):
ATAGGTGTCCCTGCACTAGTAGAATAAACCGACAATGTTTTGCGCCCAACGCTAGTCAGACAAAT
TGGTG
Found at i:6900710 original size:76 final size:76
Alignment explanation
Indices: 6900605--6900805 Score: 253
Period size: 76 Copynumber: 2.6 Consensus size: 76
6900595 GTGTGCCCTG
* * * * * *
6900605 CACTAGTCAGATAAACCGACAATGTTTTGCGCCCAGCGCTAGTCAGATAAATTGACGATATCGAA
1 CACTAGTCGGATAGACCGACAATGATTTGCGCCCAGCGCTAGTCAGATAAACTAACGATATCAAA
* *
6900670 TGTGTGTCCAA
66 TGTATGCCCAA
* *
6900681 CACT-GATCGGATAGACCGACAATGATTTGCACCCAGTGCTAGTC-GAATAAACTAACGATATCA
1 CACTAG-TCGGATAGACCGACAATGATTTGCGCCCAGCGCTAGTCAG-ATAAACTAACGATATCA
*
6900744 AATGTATGCCCAG
64 AATGTATGCCCAA
* *
6900757 CACTAGTTGGATAGATCGACAATGATTTGCGCCCAGCGCTAGTCAGATA
1 CACTAGTCGGATAGACCGACAATGATTTGCGCCCAGCGCTAGTCAGATA
6900806 TAACCGACAA
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
75 2 0.02
76 102 0.96
77 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (76 bp):
CACTAGTCGGATAGACCGACAATGATTTGCGCCCAGCGCTAGTCAGATAAACTAACGATATCAAA
TGTATGCCCAA
Found at i:6903823 original size:25 final size:25
Alignment explanation
Indices: 6903767--6903830 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
6903757 CATCTTGTAT
* *
6903767 GAGCTCACCGATTTACAGCTCGTAA
1 GAGCTTACCGATTTACAGCTCGGAA
* *
6903792 GAACTTACCGATATT-CAGCTCGGAG
1 GAGCTTACCGAT-TTACAGCTCGGAA
6903817 GAGCTTACCG-TTTA
1 GAGCTTACCGATTTA
6903831 TCGCTCGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
23 2 0.06
24 1 0.03
25 27 0.84
26 2 0.06
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (25 bp):
GAGCTTACCGATTTACAGCTCGGAA
Found at i:6918858 original size:23 final size:23
Alignment explanation
Indices: 6918826--6918892 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
6918816 TACATGTACT
*
6918826 TATAAAATATAAATAAAAATAAG
1 TATAATATATAAATAAAAATAAG
* * *
6918849 TATAATATATTAATAAAGTATGAG
1 TATAATATATAAATAAA-AATAAG
* *
6918873 TATATATATGTATATAAAAA
1 TATA-ATATATAAATAAAAA
6918893 AATATGAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
23 15 0.44
24 9 0.26
25 10 0.29
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.34
Consensus pattern (23 bp):
TATAATATATAAATAAAAATAAG
Found at i:6918897 original size:16 final size:16
Alignment explanation
Indices: 6918878--6918921 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
6918868 ATGAGTATAT
6918878 ATATGTATATAAAAAA
1 ATATGTATATAAAAAA
* * *
6918894 ATATGAAAATAAAATA
1 ATATGTATATAAAAAA
6918910 ATAATGTATATA
1 AT-ATGTATATA
6918922 TATATGTAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (16 bp):
ATATGTATATAAAAAA
Found at i:6919033 original size:18 final size:17
Alignment explanation
Indices: 6918993--6919039 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
6918983 CGTGTAAGTG
*
6918993 TATAAAAATAATAATGA
1 TATAAAAATAATAATAA
6919010 TGATAAAAATAATGAATAA
1 T-ATAAAAATAAT-AATAA
*
6919029 TATAATAATAA
1 TATAAAAATAA
6919040 GGATACAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 1 0.04
18 20 0.77
19 5 0.19
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (17 bp):
TATAAAAATAATAATAA
Found at i:6919035 original size:15 final size:15
Alignment explanation
Indices: 6918998--6919054 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
6918988 AAGTGTATAA
6918998 AAATAATAATGATGAT
1 AAATAATAATGA-GAT
6919014 AAA-AATAATGA-AT
1 AAATAATAATGAGAT
*
6919027 AATATAATAATAAGGAT
1 AA-ATAATAATGA-GAT
6919044 ACAATAATAAT
1 A-AATAATAAT
6919055 ATTAACAAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
13 4 0.11
14 1 0.03
15 15 0.43
16 3 0.09
17 11 0.31
18 1 0.03
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (15 bp):
AAATAATAATGAGAT
Found at i:6920031 original size:17 final size:17
Alignment explanation
Indices: 6920009--6920045 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
6919999 GGGCGAGGCG
*
6920009 GCTGCAGTGTTAAGCTT
1 GCTGCAGCGTTAAGCTT
6920026 GCTGCAGCGTTAAGCTT
1 GCTGCAGCGTTAAGCTT
6920043 GCT
1 GCT
6920046 ACACTAGGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.16, C:0.22, G:0.30, T:0.32
Consensus pattern (17 bp):
GCTGCAGCGTTAAGCTT
Found at i:6920676 original size:44 final size:44
Alignment explanation
Indices: 6920624--6920813 Score: 224
Period size: 44 Copynumber: 4.3 Consensus size: 44
6920614 ACCAGTATGG
* *
6920624 GAAGACAAGATCTGCTTTCTTTGATCTACTTCATGCCAATATAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCATGCCAATACAT
* * *
6920668 GAAAACAAGACCTGCTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCATGCCAATACAT
* ***
6920712 GAAGACAAGATCTACTTTCTTCGATCTACTTC--GCCACCAGTATGG
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCATGCCA--A-TACAT
*
6920757 GAAGACAAGATCTG-TTATCCTCGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTT-TCTTCGATCTACTTCATGCCAATACAT
*
6920801 GAAGACAACATCT
1 GAAGACAAGATCT
6920814 ACTTCACCAC
Statistics
Matches: 123, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
42 4 0.03
44 85 0.69
45 30 0.24
47 4 0.03
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCATGCCAATACAT
Found at i:6920783 original size:89 final size:87
Alignment explanation
Indices: 6920624--6921004 Score: 349
Period size: 88 Copynumber: 4.5 Consensus size: 87
6920614 ACCAGTATGG
* * * *
6920624 GAAGACAAGATCTGCTTTCTTTGATCTACTTCATGCCAATATATGAAAACAAGACCTGCTTTCTT
1 GAAGACAAGATCTACTTTCTTCGATCTACTTCA-GCCAATATAGGAAAACAAGACCTGCTTTCCT
6920689 CGATCTACTTCACGCCAATACAT
65 CGATCTACTTCACGCCAATACAT
* * *
6920712 GAAGACAAGATCTACTTTCTTCGATCTACTTC-GCCACCAGTATGGGAAGACAAGATCTG-TTAT
1 GAAGACAAGATCTACTTTCTTCGATCTACTTCAGCCA--A-TATAGGAAAACAAGACCTGCTT-T
*
6920775 CCTCGATCTACTTCATGCCAATACAT
62 CCTCGATCTACTTCACGCCAATACAT
* * * * * * * * **
6920801 GAAGACAACATCTA----C-T---TC-AC--CA-CCAGTATGGGAAGATAAGATCTGTTGTATTC
1 GAAGACAAGATCTACTTTCTTCGATCTACTTCAGCCAATATAGGAAAACAAGACCTGCTTTCCTC
6920854 GATCTACTTCACGCCAATACAT
66 GATCTACTTCACGCCAATACAT
* * * * * * *
6920876 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTT
1 GAAGACAAGATCTACTTTCTTCGATCTACTTCA-GCCAATATAGGAAAACAAGACCTGCTTTCCT
*
6920941 CGATCTACTTCACGCCAGTACAT
65 CGATCTACTTCACGCCAATACAT
**
6920964 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCCAATA
1 GAAGACAAGATCTACTTTCTTCGATCTACTTCA-GCCAATA
6921005 CATGAAGACA
Statistics
Matches: 245, Mismatches: 29, Indels: 38
0.79 0.09 0.12
Matches are distributed among these distances:
75 54 0.22
76 1 0.00
78 4 0.02
79 1 0.00
80 3 0.01
81 2 0.01
83 2 0.01
84 3 0.01
85 1 0.00
86 6 0.02
88 115 0.47
89 53 0.22
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (87 bp):
GAAGACAAGATCTACTTTCTTCGATCTACTTCAGCCAATATAGGAAAACAAGACCTGCTTTCCTC
GATCTACTTCACGCCAATACAT
Found at i:6920826 original size:75 final size:75
Alignment explanation
Indices: 6920735--6920888 Score: 245
Period size: 75 Copynumber: 2.1 Consensus size: 75
6920725 ACTTTCTTCG
* * *
6920735 ATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCCTCGATCTACTTCATGCCAATACA
1 ATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTATACTCGATCTACTTCACGCCAATACA
6920800 TGAAGACAAC
66 TGAAGACAAC
* * *
6920810 ATCTACTTCACCACCAGTATGGGAAGATAAGATCTGTTGTATTCGATCTACTTCACGCCAATACA
1 ATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTATACTCGATCTACTTCACGCCAATACA
*
6920875 TGAAGACAAG
66 TGAAGACAAC
6920885 ATCT
1 ATCT
6920889 GCTTTCTTCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (75 bp):
ATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTATACTCGATCTACTTCACGCCAATACA
TGAAGACAAC
Found at i:6920887 original size:44 final size:44
Alignment explanation
Indices: 6920832--6921035 Score: 329
Period size: 44 Copynumber: 4.6 Consensus size: 44
6920822 ACCAGTATGG
* *
6920832 GAAGATAAGATCTG-TTGTATTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTT-TCTTCGATCTACTTCACGCCAATACAT
*
6920876 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCTAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
6920920 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
6920964 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
6921008 GAAGACAAGATTTGCTTTCTTCAATCTA
1 GAAGACAAGATCTGCTTTCTTCGATCTA
6921036 TTCTACTGCC
Statistics
Matches: 149, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
44 147 0.99
45 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.32
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:6921109 original size:132 final size:129
Alignment explanation
Indices: 6921005--6921521 Score: 590
Period size: 132 Copynumber: 3.9 Consensus size: 129
6920995 CACGCCAATA
* * * * *
6921005 CATGAAGACAAGATTTGCTTTCTTCAATCTATTCTACTGCCGACCAGGGAGATAAAATTACTGGC
1 CATGAAGATAAGATTTG-TTTCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGC
* * *
6921070 TTCAATATACTCCACTATAACTTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTG
65 TTCAATATACTCCACTACAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACTG
* ** * *
6921135 CTTAGAGAGATAAGATCTATAATT-TTCAATCTATTCCACTGCTGCCCAGGTAGATGGAATTACT
1 CAT-GA-AGATAAGAT-T-TGTTTCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACT
* *
6921199 GACTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTA
62 GGCTTCAATATACTCCACTACAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTA
6921264 CTG
127 CTG
* * * * * *
6921267 CTTAGGGAGATAAGATCTGTAATCTTCAGTCTATTCCACTGTTGCCCAGGGAGATAGAATTACTG
1 C--ATGAAGATAAGATTTGT-TTCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTG
* *
6921332 GCTTCAATATACTCCACTACAACCTCAGTGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTAC
63 GCTTCAATATACTCCACTACAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTAC
6921397 TG
128 TG
* * * * * *
6921399 CTTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTG
1 C--ATGAAGATAAGATTTGT-TTCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTG
* ** * *
6921464 GCTTCAATGTACTCCACTGTAACCAC-GAGGAGGTAAAATCTGCCATCTTCT-ATCTGCT
63 GCTTCAATATACTCCACTACAACCTCAG-GGAGGTAAAATCTGTCATCTT-TGATCTGCT
6921522 TCGCTGTCTA
Statistics
Matches: 340, Mismatches: 37, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
130 3 0.01
131 4 0.01
132 327 0.96
133 5 0.01
134 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (129 bp):
CATGAAGATAAGATTTGTTTCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCT
TCAATATACTCCACTACAACCTCAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACTG
Found at i:6921305 original size:44 final size:44
Alignment explanation
Indices: 6921069--6921454 Score: 183
Period size: 44 Copynumber: 8.8 Consensus size: 44
6921059 AAATTACTGG
* * * **
6921069 CTTCAATATACTCCACTA-TAACTTCAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTACT-GC-TCAGGGAGATAAAATCTGTAAT
** * * * * *
6921114 CTTTGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTATAAT
1 CTTCAATCTACTCCACTACTGCTCAGGGAGATAAAATCTGTAAT
* * * * * * *
6921158 TTTCAATCTATTCCACTGCTGCCCAGGTAGATGGAATTACTG--A-
1 CTTCAATCTACTCCACTACTGCTCAGGGAGAT-AAAAT-CTGTAAT
* * ** * *
6921201 CTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCTGTCAT
1 CTTCAATCTACTCCACTAC-TGCTCAGGGAGATAAAATCTGTAAT
** * * *
6921246 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTACTGCTCAGGGAGATAAAATCTGTAAT
* * ** * * *
6921290 CTTCAGTCTATTCCACTGTTGCCCAGGGAGATAGAATTACTG---G
1 CTTCAATCTACTCCACTACTGCTCAGGGAGATA-AAAT-CTGTAAT
* ** * * **
6921333 CTTCAATATACTCCACTACAACCTCAGTGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTAC-TGCTCAGGGAGATAAAATCTGTAAT
** * *
6921378 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAAT
1 CTTCAATCTACTCCACTACTGCTCAGGGAGATAAAATCTGTAAT
* ** *
6921422 CTTCAATCTATTCCACTGTTGCCCAGGGAGATA
1 CTTCAATCTACTCCACTACTGCTCAGGGAGATA
6921455 GAATTACTGG
Statistics
Matches: 238, Mismatches: 90, Indels: 27
0.67 0.25 0.08
Matches are distributed among these distances:
42 6 0.03
43 36 0.15
44 142 0.60
45 48 0.20
46 6 0.03
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (44 bp):
CTTCAATCTACTCCACTACTGCTCAGGGAGATAAAATCTGTAAT
Found at i:6921390 original size:264 final size:264
Alignment explanation
Indices: 6921025--6921521 Score: 773
Period size: 264 Copynumber: 1.9 Consensus size: 264
6921015 AGATTTGCTT
* *
6921025 TCTTCAATCTATTCTACTGCCGACCAGGGAGATAAAATTACTGGCTTCAATATACTCCACTATAA
1 TCTTCAATCTATTCCACTGCCGACCAGGGAGATAAAATTACTGGCTTCAATATACTCCACTACAA
* *
6921090 CTTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTAT
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGAGAGATAAAATCTAT
* * *
6921155 AATTTTCAATCTATTCCACTGCTGCCCAGGTAGATGGAATTACTGACTTCAATATACTCCACTGC
131 AATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGACTTCAATATACTCCACTGC
* *
6921220 AACCTC-AGGGAGGTAAAATCTGTCATCTT-TGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
196 AACCACGA-GGAGGTAAAATCTGCCATCTTCT-ATCTGCTCCACTACTGCTTAGGGAGATAAGAT
6921283 CTGTAA
259 CTGTAA
* ** * *
6921289 TCTTCAGTCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATATACTCCACTACAA
1 TCTTCAATCTATTCCACTGCCGACCAGGGAGATAAAATTACTGGCTTCAATATACTCCACTACAA
* * *
6921354 CCTCAGTGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGAGAGATAAAATCTAT
* * * *
6921419 AATCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGT
131 AATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGACTTCAATATACTCCACTGC
6921484 AACCACGAGGAGGTAAAATCTGCCATCTTCTATCTGCT
196 AACCACGAGGAGGTAAAATCTGCCATCTTCTATCTGCT
6921522 TCGCTGTCTA
Statistics
Matches: 210, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
264 208 0.99
265 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (264 bp):
TCTTCAATCTATTCCACTGCCGACCAGGGAGATAAAATTACTGGCTTCAATATACTCCACTACAA
CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTAGAGAGATAAAATCTAT
AATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGACTTCAATATACTCCACTGC
AACCACGAGGAGGTAAAATCTGCCATCTTCTATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
GTAA
Found at i:6921629 original size:44 final size:45
Alignment explanation
Indices: 6921542--6921903 Score: 290
Period size: 44 Copynumber: 8.2 Consensus size: 45
6921532 TGCAGGAATG
* * * * *
6921542 CAAGATCTG-TTATCTTTGATCTACTTC-ACGCCAATACATGAAGA
1 CAAGATCTGCTT-TCTTTGATCTACTTCGCCACCAGTATAGGAAGA
* *
6921586 CAAGATCTGCTTTC-TTAATCTACTTCGCCACCAGTATGGGAAGA
1 CAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATAGGAAGA
* * * * * *
6921630 CAAGATCTGGTATCTTTGATCTACTTC-ACGCCAGTACATGAAGA
1 CAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATAGGAAGA
* ** *
6921674 CAAGATATGCTTT-TTCAATCTACTTCGCCACCAGTATGGGAAGA
1 CAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATAGGAAGA
* * * * * *
6921718 CAAGATATTG-TATCTTTGATCTACTTC-ACGCCAGTACATGAAGA
1 CAAGAT-CTGCTTTCTTTGATCTACTTCGCCACCAGTATAGGAAGA
* * *
6921762 CAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGG
1 CAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATAGGAAGA
* * * * * *** * *
6921807 CAAGATCTGGTATCTCTAATCTATTTC-ATGCCAGTACATGAAGA
1 CAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATAGGAAGA
* * * *
6921851 CAATATCTGCTTTCTTTGATCTGCTTCGCCACCAGTATAGAAAGG
1 CAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATAGGAAGA
6921896 CAAGATCT
1 CAAGATCT
6921904 AGTATTTCTG
Statistics
Matches: 238, Mismatches: 71, Indels: 17
0.73 0.22 0.05
Matches are distributed among these distances:
43 24 0.10
44 139 0.58
45 75 0.32
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (45 bp):
CAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATAGGAAGA
Found at i:6921844 original size:89 final size:89
Alignment explanation
Indices: 6921536--6921917 Score: 545
Period size: 88 Copynumber: 4.3 Consensus size: 89
6921526 TGTCTATGCA
* * *
6921536 GGAATGCAAGATCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC-
1 GGAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCT
6921600 TTAATCTACTTCGCCACCAGTATG
66 TTAATCTACTTCGCCACCAGTATG
* *
6921624 GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATATGCTTT-T
1 GGAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCT
*
6921688 TCAATCTACTTCGCCACCAGTATG
66 TTAATCTACTTCGCCACCAGTATG
* * *
6921712 GGAAGACAAGATATTGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCT
1 GGAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCT
* *
6921777 TTGATCTGCTTCGCCACCAGTATG
66 TTAATCTACTTCGCCACCAGTATG
* * * * *
6921801 GGAAGGCAAGATCTGGTATCTCTAATCTATTTCATGCCAGTACATGAAGACAATATCTGCTTTCT
1 GGAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCT
* * *
6921866 TTGATCTGCTTCGCCACCAGTATA
66 TTAATCTACTTCGCCACCAGTATG
* *
6921890 GAAAGGCAAGATCTAGTAT-TTCTGATCT
1 GGAAGGCAAGATCTGGTATCTT-TGATCT
6921918 GTTCTCTAGG
Statistics
Matches: 266, Mismatches: 25, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
88 142 0.53
89 124 0.47
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (89 bp):
GGAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCT
TTAATCTACTTCGCCACCAGTATG
Found at i:6923047 original size:21 final size:20
Alignment explanation
Indices: 6923013--6923055 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
6923003 TTAGCCTCTC
*
6923013 CATTTTTACTTTTCATTCTT
1 CATTTTCACTTTTCATTCTT
*
6923033 CATTTTCATCTTTTCATTTTT
1 CATTTTCA-CTTTTCATTCTT
6923054 CA
1 CA
6923056 CATTACTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.16, C:0.21, G:0.00, T:0.63
Consensus pattern (20 bp):
CATTTTCACTTTTCATTCTT
Found at i:6927200 original size:29 final size:30
Alignment explanation
Indices: 6927141--6927198 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
6927131 TCCGAGCCTT
*
6927141 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
6927171 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
6927199 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:6927428 original size:13 final size:13
Alignment explanation
Indices: 6927410--6927441 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6927400 TTTCCAGCAA
6927410 TTATGAATTTATT
1 TTATGAATTTATT
6927423 TTATGAATTTATT
1 TTATGAATTTATT
*
6927436 TGATGA
1 TTATGA
6927442 TGATCTAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:6927611 original size:50 final size:50
Alignment explanation
Indices: 6927536--6927831 Score: 466
Period size: 50 Copynumber: 5.8 Consensus size: 50
6927526 ATTTGGGTAA
6927536 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
6927586 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT--G
6927638 AGGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 A-GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
6927689 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * * * *
6927739 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCAACACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
6927789 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
6927832 TGTTATTATC
Statistics
Matches: 228, Mismatches: 14, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
50 142 0.62
51 36 0.16
52 2 0.01
53 48 0.21
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:6927716 original size:103 final size:100
Alignment explanation
Indices: 6927536--6927831 Score: 466
Period size: 103 Copynumber: 2.9 Consensus size: 100
6927526 ATTTGGGTAA
6927536 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAA
6927601 GACCATGTCTGGGACATGGCATTGGCACCGAGATGAG
66 GACCATGTCTGGGACATGGCATTGGCACCGAGAT--G
6927638 AGGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTA
1 A-GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTA
*
6927703 AGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
65 AGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * * * * **
6927739 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCAACACGAGAACATCCCATGTA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG-AGGTCCCATGTA
*
6927804 AGACCATGTCTGGGACATGGCTTTGGCA
65 AGACCATGTCTGGGACATGGCATTGGCA
6927832 TGTTATTATC
Statistics
Matches: 182, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
100 45 0.25
101 39 0.21
102 1 0.01
103 97 0.53
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.20
Consensus pattern (100 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAA
GACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:6929888 original size:23 final size:23
Alignment explanation
Indices: 6929856--6929922 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
6929846 TACATGTACT
*
6929856 TATAAAATATAAATAAAAATAAG
1 TATAATATATAAATAAAAATAAG
* * *
6929879 TATAATATATTAATAAAGTATGAG
1 TATAATATATAAATAAA-AATAAG
* *
6929903 TATATATATGTATATAAAAA
1 TATA-ATATATAAATAAAAA
6929923 ATATGAAAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
23 15 0.44
24 9 0.26
25 10 0.29
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.34
Consensus pattern (23 bp):
TATAATATATAAATAAAAATAAG
Found at i:6929922 original size:48 final size:46
Alignment explanation
Indices: 6929870--6929960 Score: 110
Period size: 48 Copynumber: 1.9 Consensus size: 46
6929860 AAATATAAAT
* * *
6929870 AAAAATAAGTATAATATATTAATAAAGTATGAGTATATATATGTATATA
1 AAAAATAAG-AAAATAAAATAATAAAGTAT-A-TATATATATGTATATA
* *
6929919 AAAAATATGAAAATAAAATAATAATGTATATATATATATGTA
1 AAAAATAAGAAAATAAAATAATAAAGTATATATATATATGTA
6929961 AAATGCGCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
46 12 0.32
47 1 0.03
48 16 0.43
49 8 0.22
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (46 bp):
AAAAATAAGAAAATAAAATAATAAAGTATATATATATATGTATATA
Found at i:6930068 original size:18 final size:16
Alignment explanation
Indices: 6930019--6930074 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
6930009 AATGCGTGCA
6930019 AATGTATAA-AAATAAT
1 AATG-ATAATAAATAAT
*
6930035 AATGATGATAAA-AAT
1 AATGATAATAAATAAT
6930050 AATGAATAATACAATAAT
1 AATG-ATAATA-AATAAT
*
6930068 AAGGATA
1 AATGATA
6930075 CAACAATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
15 10 0.30
16 12 0.36
17 5 0.15
18 6 0.18
ACGTcount: A:0.61, C:0.02, G:0.11, T:0.27
Consensus pattern (16 bp):
AATGATAATAAATAAT
Found at i:6931275 original size:13 final size:13
Alignment explanation
Indices: 6931257--6931281 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6931247 TTATTTACAT
6931257 AAAATAAATATTA
1 AAAATAAATATTA
6931270 AAAATAAATATT
1 AAAATAAATATT
6931282 TTTTATTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATAAATATTA
Found at i:6936433 original size:58 final size:56
Alignment explanation
Indices: 6936362--6936560 Score: 303
Period size: 55 Copynumber: 3.6 Consensus size: 56
6936352 TCCAAAAAAT
* * *
6936362 GATTGCTTATATGTTTAAATCGATTGTTATGGTGGAATACTTCTTCTTCTTTTGAATC
1 GATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATACTT-GT-TTCTTTTGAATC
*
6936420 GATTGTTTATATGTTTAAATCGACTGTTATGTTGGAATAC-TGTTTCTTTTGAATC
1 GATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATACTTGTTTCTTTTGAATC
* * *
6936475 GATTGTTTATAAGTTTAAATCTATTGTTATATTGGAATA-TTGTTTCTTTTGAATC
1 GATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATACTTGTTTCTTTTGAATC
6936530 GATTGTTTATATGTTTAAATCGATTGTTATG
1 GATTGTTTATATGTTTAAATCGATTGTTATG
6936561 CAGTACGTCT
Statistics
Matches: 129, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
55 90 0.70
56 1 0.01
57 1 0.01
58 37 0.29
ACGTcount: A:0.25, C:0.08, G:0.17, T:0.50
Consensus pattern (56 bp):
GATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATACTTGTTTCTTTTGAATC
Found at i:6936536 original size:18 final size:18
Alignment explanation
Indices: 6936460--6936537 Score: 54
Period size: 18 Copynumber: 4.3 Consensus size: 18
6936450 GTTGGAATAC
6936460 TGTTTCTTTTGAATCGAT
1 TGTTTCTTTTGAATCGAT
* * *
6936478 TGTTTATAAGTTTAAATCTAT
1 TGTTTCT---TTTGAATCGAT
* *
6936499 TGTTAT-ATTGGAAT--AT
1 TGTT-TCTTTTGAATCGAT
6936515 TGTTTCTTTTGAATCGAT
1 TGTTTCTTTTGAATCGAT
6936533 TGTTT
1 TGTTT
6936538 ATATGTTTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
15 1 0.02
16 12 0.27
18 18 0.40
21 13 0.29
22 1 0.02
ACGTcount: A:0.23, C:0.06, G:0.15, T:0.55
Consensus pattern (18 bp):
TGTTTCTTTTGAATCGAT
Found at i:6936552 original size:21 final size:20
Alignment explanation
Indices: 6936466--6936557 Score: 61
Period size: 21 Copynumber: 4.8 Consensus size: 20
6936456 ATACTGTTTC
*
6936466 TTTTGAATCGATTGTTTATAA
1 TTTTAAATCGATTGTTTAT-A
* *
6936487 GTTTAAATCTATTG-TTATA
1 TTTTAAATCGATTGTTTATA
** *
6936506 -TTGGAAT--ATTG-TT-TC
1 TTTTAAATCGATTGTTTATA
*
6936521 TTTTGAATCGATTGTTTATA
1 TTTTAAATCGATTGTTTATA
6936541 TGTTTAAATCGATTGTT
1 T-TTTAAATCGATTGTT
6936558 ATGCAGTACG
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
15 1 0.02
16 12 0.21
18 9 0.16
19 3 0.05
20 6 0.11
21 25 0.45
ACGTcount: A:0.26, C:0.05, G:0.15, T:0.53
Consensus pattern (20 bp):
TTTTAAATCGATTGTTTATA
Found at i:6938268 original size:107 final size:107
Alignment explanation
Indices: 6938041--6938257 Score: 393
Period size: 107 Copynumber: 2.0 Consensus size: 107
6938031 TGAATGGTTA
* *
6938041 TTTGTATGCTTACCCAATTCAAATATAATTCTTGTGATTTTTTCTCTATAAATAGAGACTATAGG
1 TTTGTATGCTTAACCAATTCAAATATAATTCTTGTGATTTTTCCTCTATAAATAGAGACTATAGG
6938106 TGTCGAATTAAATATATATATATATACATACTGAAGAGAAAC
66 TGTCGAATTAAATATATATATATATACATACTGAAGAGAAAC
6938148 TTTGTATGCTTAACCAATTCAAATATAATTCTTGTGATTTTTCCTCTATAAATAGAGACTATAGG
1 TTTGTATGCTTAACCAATTCAAATATAATTCTTGTGATTTTTCCTCTATAAATAGAGACTATAGG
*
6938213 TGTCGAATT-AA-ATATATATATATACATACTGAAGGGAAAC
66 TGTCGAATTAAATATATATATATATACATACTGAAGAGAAAC
6938253 TTTGT
1 TTTGT
6938258 TGAAATTTAA
Statistics
Matches: 107, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
105 33 0.31
106 2 0.02
107 72 0.67
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (107 bp):
TTTGTATGCTTAACCAATTCAAATATAATTCTTGTGATTTTTCCTCTATAAATAGAGACTATAGG
TGTCGAATTAAATATATATATATATACATACTGAAGAGAAAC
Found at i:6950361 original size:16 final size:17
Alignment explanation
Indices: 6950340--6950377 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
6950330 TTCTATAGGG
*
6950340 ATTTTACT-TTTATTTT
1 ATTTTACTATGTATTTT
6950356 ATTTTACTACTGTATTTT
1 ATTTTACTA-TGTATTTT
6950374 ATTT
1 ATTT
6950378 AAATAATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTACTATGTATTTT
Found at i:6951952 original size:17 final size:18
Alignment explanation
Indices: 6951926--6951964 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
6951916 TTTACTGTGG
6951926 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
6951942 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
6951960 AAAAT
1 AAAAT
6951965 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:6952135 original size:15 final size:15
Alignment explanation
Indices: 6952115--6952145 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6952105 AAAACAATAT
*
6952115 AACTCTTGGCCTTTC
1 AACTCTTGACCTTTC
6952130 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
6952145 A
1 A
6952146 CTTACATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.10, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:6956299 original size:17 final size:18
Alignment explanation
Indices: 6956274--6956313 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
6956264 CCAAATTGTG
*
6956274 AAAAATGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
6956291 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
6956309 AAAAT
1 AAAAT
6956314 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:6956487 original size:15 final size:15
Alignment explanation
Indices: 6956464--6956494 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6956454 AAAATAATAT
*
6956464 AACTCTTGACCTTTC
1 AACTATTGACCTTTC
6956479 AACTATTGACCTTTC
1 AACTATTGACCTTTC
6956494 A
1 A
6956495 CTTACATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.29, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTATTGACCTTTC
Found at i:6958919 original size:8 final size:8
Alignment explanation
Indices: 6958906--6958939 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
6958896 TATGAATTAA
6958906 ATATTATT
1 ATATTATT
6958914 ATATTATT
1 ATATTATT
* *
6958922 ATAATAAT
1 ATATTATT
6958930 ATATTATT
1 ATATTATT
6958938 AT
1 AT
6958940 TGTTAACATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
ATATTATT
Found at i:6959436 original size:17 final size:18
Alignment explanation
Indices: 6959414--6959447 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6959404 CAAATGAGTT
6959414 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
6959431 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
6959448 AAATGAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:6959766 original size:36 final size:35
Alignment explanation
Indices: 6959726--6959818 Score: 98
Period size: 36 Copynumber: 2.5 Consensus size: 35
6959716 TATATGTGTG
* *
6959726 GAATTGAAATGAATAT-TGACTTGAAAATGAAAAAGT
1 GAATTGAATTGAAT-TGTGA-TTGAAAATAAAAAAGT
*
6959762 GAATTTTGAATTGAATTGTGATTGAAAGTAAAAAAGT
1 GAA--TTGAATTGAATTGTGATTGAAAATAAAAAAGT
*
6959799 GAAATTGAATTGAAATGTGA
1 G-AATTGAATTGAATTGTGA
6959819 ATTTGGAGAC
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
36 18 0.37
37 16 0.33
38 15 0.31
ACGTcount: A:0.46, C:0.01, G:0.22, T:0.31
Consensus pattern (35 bp):
GAATTGAATTGAATTGTGATTGAAAATAAAAAAGT
Found at i:6961654 original size:15 final size:16
Alignment explanation
Indices: 6961631--6961661 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
6961621 TTGTAGTTTA
6961631 GTGATTTTTTTTATCC
1 GTGATTTTTTTTATCC
6961647 GTGA-TTTTTTTATCC
1 GTGATTTTTTTTATCC
6961662 TTTTTAGAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.61
Consensus pattern (16 bp):
GTGATTTTTTTTATCC
Found at i:6964056 original size:6 final size:6
Alignment explanation
Indices: 6964045--6964069 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6964035 AAACAAAAAG
6964045 TATTAA TATTAA TATTAA TATTAA T
1 TATTAA TATTAA TATTAA TATTAA T
6964070 TATAAAAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TATTAA
Found at i:6969744 original size:89 final size:89
Alignment explanation
Indices: 6969632--6969799 Score: 209
Period size: 89 Copynumber: 1.9 Consensus size: 89
6969622 AGTTAGGCCC
* * * *
6969632 TGACTTGGCAACTTTTCCCACATT-GGGCCTGAACATTTTGTTGTCCGAA-TTAGGTCC-TAAAC
1 TGACTTCGCAACTTTTCCAACATTAGGACCTGAAC-TTTTGTTGTCC-AAGTTAAG-CCTTAAAC
*
6969694 TTGGCAATTGTTCTCACGTTGGGACTT
63 TTGACAATTGTTCTCACGTTGGGACTT
* *
6969721 TGACTTCGCAAC-TTTCTCAACATTAGGACCTGAACTTTTTTTGTCCAAGTTAAGCCTTGAACTT
1 TGACTTCGCAACTTTTC-CAACATTAGGACCTGAACTTTTGTTGTCCAAGTTAAGCCTTAAACTT
6969785 GACAATTGTTCTCAC
65 GACAATTGTTCTCAC
6969800 ATTGAACCCT
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
88 8 0.12
89 51 0.75
90 9 0.13
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (89 bp):
TGACTTCGCAACTTTTCCAACATTAGGACCTGAACTTTTGTTGTCCAAGTTAAGCCTTAAACTTG
ACAATTGTTCTCACGTTGGGACTT
Found at i:6969844 original size:31 final size:31
Alignment explanation
Indices: 6969770--6969846 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
6969760 TTTGTCCAAG
* *
6969770 TTAAGCCTTGAACTTGACAATTGTTCTCACA
1 TTAAGCCTTGAACTTAACAATTGTTCCCACA
* *
6969801 TTGAA-CCCTGAACTTAATAATTGTTCCCACA
1 TT-AAGCCTTGAACTTAACAATTGTTCCCACA
*
6969832 TTAAGGCTTGAACTT
1 TTAAGCCTTGAACTT
6969847 TAGGGTTGTC
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
30 2 0.05
31 34 0.89
32 2 0.05
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (31 bp):
TTAAGCCTTGAACTTAACAATTGTTCCCACA
Found at i:6975825 original size:37 final size:37
Alignment explanation
Indices: 6975764--6975909 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
6975754 TACGTATGAT
* *
6975764 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
6975799 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6975836 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
6975873 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6975910 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:6975952 original size:52 final size:52
Alignment explanation
Indices: 6975873--6976141 Score: 379
Period size: 52 Copynumber: 5.2 Consensus size: 52
6975863 TAAGTGTAGC
* * ** *
6975873 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTTT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
6975926 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
6975978 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
6976030 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
6976076 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
6976128 CACTTTGTCACTTG
1 CACTTT-TCACTTG
6976142 ATCAGAAGTA
Statistics
Matches: 195, Mismatches: 14, Indels: 14
0.87 0.06 0.06
Matches are distributed among these distances:
46 43 0.22
49 1 0.01
52 136 0.70
53 15 0.08
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:6976047 original size:46 final size:46
Alignment explanation
Indices: 6975975--6976147 Score: 231
Period size: 46 Copynumber: 3.7 Consensus size: 46
6975965 AGCTATCACT
*
6975975 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
6976020 TATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
* **
6976066 TATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGC
1 TATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
6976118 TACCACTTATCACTTTGTCACTTGATCAGA
1 TATCACTTATCACTTTGTCACTTGATCAGA
6976148 AGTACTCAAA
Statistics
Matches: 113, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
45 12 0.11
46 59 0.52
48 1 0.01
50 1 0.01
52 40 0.35
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
Found at i:6976060 original size:98 final size:98
Alignment explanation
Indices: 6975873--6976147 Score: 406
Period size: 98 Copynumber: 2.7 Consensus size: 98
6975863 TAAGTGTAGC
* * *
6975873 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTTTCACTTTTCACTT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCAC---T---TT
*
6975938 GTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
59 GTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
6975978 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
6976043 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
6976076 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
6976141 GATCAGA
66 GATCAGA
6976148 AGTACTCAAA
Statistics
Matches: 159, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
98 108 0.68
101 1 0.01
104 41 0.26
105 9 0.06
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:6979327 original size:49 final size:50
Alignment explanation
Indices: 6979272--6979475 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
6979262 TTCGTTTTCT
*
6979272 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
6979321 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
6979370 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
6979428 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
6979476 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:6979442 original size:58 final size:59
Alignment explanation
Indices: 6979356--6979474 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
6979346 TACACGAAAT
6979356 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
6979414 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
6979473 CA
1 CA
6979475 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:6979455 original size:28 final size:28
Alignment explanation
Indices: 6979365--6979455 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
6979355 TCACATATCA
6979365 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
6979393 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
6979423 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
6979451 CTTAC
1 CTTAC
6979456 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:6980790 original size:37 final size:37
Alignment explanation
Indices: 6980729--6980911 Score: 309
Period size: 37 Copynumber: 5.0 Consensus size: 37
6980719 TACGTATGAT
* *
6980729 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6980764 CAAC-TATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 C-ACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6980801 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6980838 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
6980875 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6980912 TAAAGCTATC
Statistics
Matches: 141, Mismatches: 3, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
35 7 0.05
36 7 0.05
37 127 0.90
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:6980954 original size:52 final size:52
Alignment explanation
Indices: 6980875--6981143 Score: 388
Period size: 52 Copynumber: 5.2 Consensus size: 52
6980865 TAAGTGTAGC
* * **
6980875 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
6980928 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
6980980 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
6981032 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
6981078 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
6981130 CACTTTGTCACTTG
1 CACTTT-TCACTTG
6981144 ATCAGAAGTA
Statistics
Matches: 196, Mismatches: 13, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
46 43 0.22
49 1 0.01
52 137 0.70
53 15 0.08
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:6981062 original size:98 final size:98
Alignment explanation
Indices: 6980875--6981149 Score: 415
Period size: 98 Copynumber: 2.7 Consensus size: 98
6980865 TAAGTGTAGC
* *
6980875 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCAC---T---TT
*
6980940 GTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
59 GTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
6980980 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
6981045 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
6981078 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
6981143 GATCAGA
66 GATCAGA
6981150 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
98 108 0.68
101 1 0.01
104 42 0.26
105 9 0.06
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:6981200 original size:150 final size:147
Alignment explanation
Indices: 6980875--6981143 Score: 394
Period size: 150 Copynumber: 1.8 Consensus size: 147
6980865 TAAGTGTAGC
* * * *
6980875 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
* * ** *
6980940 GTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAG
66 GTCACTTGATCAGATAAGTGTAGCCAAAGCTACCACTTATCACTTTTCACTTGTCACAAGATCAA
6981005 ATAAGTGTAGCCGAAGCTA
131 ATAAGTGTAGCC--AGCTA
* *
6981024 TCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 -CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
*
6981089 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTG
65 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTACCACTTATCACTTT-TCACTTG
6981144 ATCAGAAGTA
Statistics
Matches: 109, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
150 102 0.94
151 7 0.06
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (147 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTGTAGCCAAAGCTACCACTTATCACTTTTCACTTGTCACAAGATCAA
ATAAGTGTAGCCAGCTA
Found at i:6990017 original size:41 final size:41
Alignment explanation
Indices: 6989888--6990020 Score: 109
Period size: 37 Copynumber: 3.4 Consensus size: 41
6989878 AGTTTGGCAC
* * *
6989888 CCAGTGCCTCATCGAA-AAATTCGAAGCA-ATAATTTGACAC
1 CCAGTGCCTCATCGAATAAATCCGAAG-AGATAAATTGACAA
* * * *
6989928 CCAATGTCTCATCGATTAAA-CC-AA-AG-TAAATTGGC-A
1 CCAGTGCCTCATCGAATAAATCCGAAGAGATAAATTGACAA
* *
6989964 CCTACTGCCTCATCGAATAAATCCGAAGTGATAAATTGACAA
1 CC-AGTGCCTCATCGAATAAATCCGAAGAGATAAATTGACAA
*
6990006 CCAGTGTCTCATCGA
1 CCAGTGCCTCATCGA
6990021 CTCAAAGTTG
Statistics
Matches: 71, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
36 2 0.03
37 23 0.32
38 2 0.03
39 4 0.06
40 15 0.21
41 22 0.31
42 3 0.04
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (41 bp):
CCAGTGCCTCATCGAATAAATCCGAAGAGATAAATTGACAA
Found at i:6990909 original size:22 final size:20
Alignment explanation
Indices: 6990857--6990928 Score: 56
Period size: 22 Copynumber: 3.4 Consensus size: 20
6990847 TCTTTCTCCT
6990857 TTTCTTTCCTTTTTCATTTTTC
1 TTTCTTT-C-TTTTCATTTTTC
* * *
6990879 TTCCCTTCTGTTTCGTTTGTTC
1 TTTCTTTCT-TTTCATTT-TTC
6990901 TTTCTTTCTTTTCTATTTCTT-
1 TTTCTTTCTTTTC-ATTT-TTC
6990922 TTTCTTT
1 TTTCTTT
6990929 GATATATATA
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
20 1 0.03
21 19 0.47
22 20 0.50
ACGTcount: A:0.03, C:0.22, G:0.04, T:0.71
Consensus pattern (20 bp):
TTTCTTTCTTTTCATTTTTC
Found at i:6992489 original size:3 final size:3
Alignment explanation
Indices: 6992481--6992508 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
6992471 GGATCTATCC
6992481 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
6992509 TTCGAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:6995716 original size:3 final size:3
Alignment explanation
Indices: 6995708--6995736 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
6995698 ATAATTTCTC
6995708 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
6995737 ATCAGTTCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7002243 original size:26 final size:27
Alignment explanation
Indices: 7002214--7002268 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
7002204 TATTTTATTA
*
7002214 TTTTAT-AAAAATAAAATTTAATACTT
1 TTTTATAAAAAATAAAATTCAATACTT
7002240 TTTTATACAAAAATAAAATTCAATACTT
1 TTTTATA-AAAAATAAAATTCAATACTT
7002268 T
1 T
7002269 GTTTTTGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 6 0.23
28 20 0.77
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (27 bp):
TTTTATAAAAAATAAAATTCAATACTT
Found at i:7004289 original size:4 final size:4
Alignment explanation
Indices: 7004280--7004314 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
7004270 TACTCCTCAG
*
7004280 GTAT GTAT GTAT CTAT GTAT GTAT GTAT GTAT GTA
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA
7004315 CAATAATCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.26, C:0.03, G:0.23, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:7009432 original size:43 final size:43
Alignment explanation
Indices: 7009340--7009425 Score: 149
Period size: 43 Copynumber: 2.0 Consensus size: 43
7009330 AAATGTTTTC
7009340 CATTTTTTAATCCAAGATTGTGACTTTATCCGGAATTGATAAA
1 CATTTTTTAATCCAAGATTGTGACTTTATCCGGAATTGATAAA
*
7009383 CATTTTTTAATCCAAGATTGTGAC-TT-TCCGGCATTGATAAA
1 CATTTTTTAATCCAAGATTGTGACTTTATCCGGAATTGATAAA
7009424 CA
1 CA
7009426 GATTTTTCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
41 16 0.38
42 2 0.05
43 24 0.57
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.38
Consensus pattern (43 bp):
CATTTTTTAATCCAAGATTGTGACTTTATCCGGAATTGATAAA
Found at i:7013981 original size:26 final size:26
Alignment explanation
Indices: 7013945--7013997 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
7013935 AAAGCAGTTC
7013945 AGTGGGTTTTAAGATACTTACAAGGT
1 AGTGGGTTTTAAGATACTTACAAGGT
*
7013971 AGTGGGTTTTAAGATACTTACGAGGT
1 AGTGGGTTTTAAGATACTTACAAGGT
7013997 A
1 A
7013998 CTACCGATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34
Consensus pattern (26 bp):
AGTGGGTTTTAAGATACTTACAAGGT
Found at i:7018877 original size:5 final size:5
Alignment explanation
Indices: 7018869--7018894 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7018859 GTATATGAAA
7018869 ATAAT ATAAT ATAAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT A
7018895 GATTACAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:7019557 original size:20 final size:20
Alignment explanation
Indices: 7019532--7019572 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
7019522 TTTATGCTAA
7019532 AACTGATTGTTGATGGGTGC
1 AACTGATTGTTGATGGGTGC
7019552 AACTGATTGTTGATGGGTGC
1 AACTGATTGTTGATGGGTGC
7019572 A
1 A
7019573 GGGGACTGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.10, G:0.34, T:0.34
Consensus pattern (20 bp):
AACTGATTGTTGATGGGTGC
Found at i:7020420 original size:22 final size:25
Alignment explanation
Indices: 7020380--7020424 Score: 69
Period size: 22 Copynumber: 1.9 Consensus size: 25
7020370 TTGTACGTTT
7020380 TTTTCTTTTTTCAGAATTTTAAGGA
1 TTTTCTTTTTTCAGAATTTTAAGGA
7020405 TTTT-TTTTTT-AG-ATTTTAAG
1 TTTTCTTTTTTCAGAATTTTAAG
7020425 AATCTACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.40
23 2 0.10
24 6 0.30
25 4 0.20
ACGTcount: A:0.22, C:0.04, G:0.11, T:0.62
Consensus pattern (25 bp):
TTTTCTTTTTTCAGAATTTTAAGGA
Found at i:7021040 original size:21 final size:21
Alignment explanation
Indices: 7020992--7021040 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
7020982 TAAACTAAAT
* **
7020992 TATTAATCACCCAATTATGATT
1 TATT-ATCACCCAATAATGAAA
*
7021014 TTTTATCACCCAATAATGAAA
1 TATTATCACCCAATAATGAAA
7021035 TATTAT
1 TATTAT
7021041 AAAATGATCG
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (21 bp):
TATTATCACCCAATAATGAAA
Found at i:7022273 original size:21 final size:21
Alignment explanation
Indices: 7022249--7022295 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
7022239 ACCACATTTC
* *
7022249 TTTTAATCTTTTTA-AATTGAT
1 TTTTAA-CATTTTATAATTAAT
7022270 TTTT-ACATTTTATAATTAAT
1 TTTTAACATTTTATAATTAAT
7022290 TTTTAA
1 TTTTAA
7022296 ATATTTTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 6 0.27
20 11 0.50
21 5 0.23
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTAACATTTTATAATTAAT
Found at i:7022280 original size:20 final size:21
Alignment explanation
Indices: 7022257--7022320 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 21
7022247 TCTTTTAATC
7022257 TTTTTA-AATTGATTTTTACA
1 TTTTTATAATTGATTTTTACA
* *
7022277 -TTTTATAATTAATTTTTAAA
1 TTTTTATAATTGATTTTTACA
7022297 TATTTTCATAA--GATTTTTACA
1 T-TTTT-ATAATTGATTTTTACA
7022318 TTT
1 TTT
7022321 CTCAAGTCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
19 5 0.14
20 14 0.39
21 9 0.25
22 4 0.11
23 4 0.11
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (21 bp):
TTTTTATAATTGATTTTTACA
Found at i:7027873 original size:12 final size:12
Alignment explanation
Indices: 7027858--7027950 Score: 84
Period size: 12 Copynumber: 7.8 Consensus size: 12
7027848 ATGTATAAAT
*
7027858 ATAATGATAGTA
1 ATAATAATAGTA
7027870 ATAATAATAGTA
1 ATAATAATAGTA
* *
7027882 GTAATAATACTA
1 ATAATAATAGTA
*
7027894 ACAATAATAGTAAA
1 ATAATAATAGT--A
7027908 GATAATAATAGT-
1 -ATAATAATAGTA
*
7027920 A-AATAATATTA
1 ATAATAATAGTA
*
7027931 ATAATAATAATA
1 ATAATAATAGTA
7027943 ATAA-AATA
1 ATAATAATA
7027951 AACAAAATAA
Statistics
Matches: 67, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
10 8 0.12
11 6 0.09
12 42 0.63
14 1 0.01
15 10 0.15
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (12 bp):
ATAATAATAGTA
Found at i:7027963 original size:3 final size:3
Alignment explanation
Indices: 7027858--7027951 Score: 75
Period size: 3 Copynumber: 31.3 Consensus size: 3
7027848 ATGTATAAAT
* * * * * * *
7027858 ATA ATG ATA GTA ATA ATA ATA GTA GTA ATA ATA CTA ACA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
7027906 A-A GATA ATA ATA GTAA ATA ATA TTA ATA ATA ATA ATA ATA A-A ATA
1 ATA -ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7027951 A
1 A
7027952 ACAAAATAAT
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
2 3 0.04
3 65 0.92
4 3 0.04
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7028763 original size:12 final size:12
Alignment explanation
Indices: 7028746--7028777 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
7028736 TAATATACAA
7028746 AATAAAGAAAAT
1 AATAAAGAAAAT
7028758 AATAAA-AAAAT
1 AATAAAGAAAAT
7028769 AA-AAAGAAA
1 AATAAAGAAA
7028778 TGCAAATCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 3 0.16
11 10 0.53
12 6 0.32
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.12
Consensus pattern (12 bp):
AATAAAGAAAAT
Found at i:7033096 original size:19 final size:19
Alignment explanation
Indices: 7033074--7033121 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
7033064 ATTACAAAAT
*
7033074 AATTTAAAATAATTT-TCAA
1 AATTTAAAAT-ATTTATAAA
*
7033093 AATTCAAAATATTTATAAA
1 AATTTAAAATATTTATAAA
7033112 AATTTTAAAA
1 AA-TTTAAAA
7033122 GTGAAGTAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 4 0.17
19 14 0.58
20 6 0.25
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (19 bp):
AATTTAAAATATTTATAAA
Found at i:7042586 original size:24 final size:24
Alignment explanation
Indices: 7042521--7042586 Score: 69
Period size: 25 Copynumber: 2.7 Consensus size: 24
7042511 CAAAAATACG
* * *
7042521 TCCCGTTATTAGCTCTCGTGAGCT
1 TCCCGTTAATAGCTCTTGCGAGCT
* * *
7042545 TTCCGTTATATGGTTCTTGCGAGCT
1 TCCCGTTA-ATAGCTCTTGCGAGCT
7042570 TCCCGTTAATAGCTCTT
1 TCCCGTTAATAGCTCTT
7042587 CGGAGCATCC
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
24 14 0.44
25 18 0.56
ACGTcount: A:0.14, C:0.26, G:0.20, T:0.41
Consensus pattern (24 bp):
TCCCGTTAATAGCTCTTGCGAGCT
Found at i:7042592 original size:24 final size:25
Alignment explanation
Indices: 7042521--7042598 Score: 72
Period size: 24 Copynumber: 3.2 Consensus size: 25
7042511 CAAAAATACG
* *
7042521 TCCCGTTATTAGCTC-TCGTGAGCT
1 TCCCGTTAATAGCTCTTCGCGAGCT
* * *
7042545 TTCCGTTATATGGTTCTT-GCGAGCT
1 TCCCGTTA-ATAGCTCTTCGCGAGCT
*
7042570 TCCCGTTAATAGCTCTTCG-GAGCA
1 TCCCGTTAATAGCTCTTCGCGAGCT
7042594 TCCCG
1 TCCCG
7042599 ATTGGTTGTG
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
24 23 0.55
25 18 0.43
26 1 0.02
ACGTcount: A:0.14, C:0.28, G:0.22, T:0.36
Consensus pattern (25 bp):
TCCCGTTAATAGCTCTTCGCGAGCT
Found at i:7042801 original size:24 final size:24
Alignment explanation
Indices: 7042772--7042853 Score: 105
Period size: 24 Copynumber: 3.4 Consensus size: 24
7042762 TGGCTCATAT
7042772 GAGCTTCCCATTAATGGCTCTCTAG
1 GAGCTTCCCATTAATGGCTCTCT-G
7042797 G-GCTTCCCATTAATGGCTCTCTG
1 GAGCTTCCCATTAATGGCTCTCTG
* *
7042820 GAGCTTCCCGTTACATGGCTCACAT-
1 GAGCTTCCCATTA-ATGGCTCTC-TG
7042845 GAGCTTCCC
1 GAGCTTCCC
7042854 GTTATGTGCT
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
23 2 0.04
24 31 0.60
25 18 0.35
26 1 0.02
ACGTcount: A:0.17, C:0.32, G:0.21, T:0.30
Consensus pattern (24 bp):
GAGCTTCCCATTAATGGCTCTCTG
Found at i:7042857 original size:25 final size:24
Alignment explanation
Indices: 7042762--7042853 Score: 98
Period size: 24 Copynumber: 3.8 Consensus size: 24
7042752 TTCTTGATAT
7042762 TGGCTCA-TATGAGCTTCCCATTAA
1 TGGCTCACTA-GAGCTTCCCATTAA
* *
7042786 TGGCTCTCTAGGGCTTCCCATTAA
1 TGGCTCACTAGAGCTTCCCATTAA
* * *
7042810 TGGCTCTCTGGAGCTTCCCGTTACA
1 TGGCTCACTAGAGCTTCCCATTA-A
7042835 TGGCTCAC-ATGAGCTTCCC
1 TGGCTCACTA-GAGCTTCCC
7042854 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
24 39 0.67
25 19 0.33
ACGTcount: A:0.17, C:0.30, G:0.21, T:0.32
Consensus pattern (24 bp):
TGGCTCACTAGAGCTTCCCATTAA
Found at i:7044294 original size:27 final size:27
Alignment explanation
Indices: 7044263--7044350 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
7044253 TGAAATGCTT
*
7044263 CGAAGAGCCACAATCACTATGTTGCAC
1 CGAAGTGCCACAATCACTATGTTGCAC
* * *
7044290 TGAAGTGCCACAATCATTAAGTTGCAC
1 CGAAGTGCCACAATCACTATGTTGCAC
* * *
7044317 CAAAGTGCCACTATCACTGAT-TTGCAT
1 CGAAGTGCCACAATCACT-ATGTTGCAC
7044344 CGAAGTG
1 CGAAGTG
7044351 TTACTGTCGC
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (27 bp):
CGAAGTGCCACAATCACTATGTTGCAC
Found at i:7059168 original size:10 final size:11
Alignment explanation
Indices: 7059153--7059201 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
7059143 CAACTAAATC
7059153 ATTTCTCTC-A
1 ATTTCTCTCAA
7059163 ATTTCTCTCAA
1 ATTTCTCTCAA
*
7059174 ATTCCTCTCAA
1 ATTTCTCTCAA
*
7059185 ATTCCTCTCAA
1 ATTTCTCTCAA
7059196 ATTTCT
1 ATTTCT
7059202 ATTTAAAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
10 9 0.25
11 27 0.75
ACGTcount: A:0.24, C:0.31, G:0.00, T:0.45
Consensus pattern (11 bp):
ATTTCTCTCAA
Found at i:7061042 original size:18 final size:18
Alignment explanation
Indices: 7061019--7061056 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7061009 TGCCAGGTGC
* *
7061019 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
7061037 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
7061055 GT
1 GT
7061057 TTCCATTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:7061283 original size:21 final size:21
Alignment explanation
Indices: 7061259--7061299 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7061249 ATCCCCTACC
* * *
7061259 GGAGGAACCAGAATCCCCGCT
1 GGAGCAACCACAACCCCCGCT
7061280 GGAGCAACCACAACCCCCGC
1 GGAGCAACCACAACCCCCGC
7061300 CAGAAGCTGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.41, G:0.24, T:0.05
Consensus pattern (21 bp):
GGAGCAACCACAACCCCCGCT
Found at i:7064326 original size:125 final size:125
Alignment explanation
Indices: 7064008--7064422 Score: 641
Period size: 126 Copynumber: 3.3 Consensus size: 125
7063998 CAAACATACA
*
7064008 CTACTGTAGCAAAAGCGCGTTCACGTGAGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCTTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGAGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCTTG
* * **
7064073 CTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTATTCGAAATTATTTGTTCAAAAG
66 CTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTT-TTTAGGAG
* * *
7064134 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTTAGTACTTCTGCTGACAAAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGAGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCTTG
* * * *
7064199 CTTAAAGCATTTTTTACACTATTTGCTGAGAAACGTCTACTCAAAATTATTTTTTAGGAG
66 CTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTAGGAG
* * *
7064259 CTACTGTAGCAAAAGCGCATCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATATTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGAGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCTTG
* *
7064324 CTTAAAGCGTTTTTGACACTATTTGCTCAAAAACATCTACTCGAAATTATTTTTTCAGGAG
66 CTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTT-AGGAG
* *
7064385 CTACTGTAGTAAAAGTGCGTCCACGTGAGAGCTTCTTT
1 CTACTGTAGCAAAAGCGCGTCCACGTGAGAGCTTCTTT
7064423 AAATTAACAA
Statistics
Matches: 262, Mismatches: 26, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
125 115 0.44
126 147 0.56
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGAGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCTTG
CTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTAGGAG
Found at i:7064575 original size:97 final size:95
Alignment explanation
Indices: 7064455--7064735 Score: 339
Period size: 96 Copynumber: 2.9 Consensus size: 95
7064445 AGTAACCCTA
*
7064455 AACCCCAAACCCTAATTTATTTGAGTTTTTACTTAAAAACCCTAAACACTAAACCCTAATCAAAT
1 AACCCTAAACCCTAATTTATTTGA-TTTTTACTTAAAAACCCTAAACACTAAACCCTAATCAAAT
*
7064520 TTTATAAAAAATTATAATTAATTTACTCAAGT
65 TTT-TAAAAATTTATAATTAATTTACTCAAGT
* * * * * * * **
7064552 AACCCTGAACCATAATTTATTTGATTTTTCCTTAAAAAACCTTAACTCTAAACCCTTATCTGATT
1 AACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAATCAAATT
* *
7064617 TTTAAATAATTTTTAATTAAATTACTCAAGT
66 TTTAAA-AATTTATAATTAATTTACTCAAGT
* * ** * *
7064648 AACCCTAAACCCTAATTTAATTGATTTTTTCTTAAAAAACAATAAACACGAAA-CCTAATCCAAT
1 AACCCTAAACCCTAATTTATTTGATTTTTACTT-AAAAACCCTAAACACTAAACCCTAATCAAAT
*
7064712 TTTGAAAAATTTATAATTAATTTA
65 TTTTAAAAATTTATAATTAATTTA
7064736 ATTGACAAAC
Statistics
Matches: 153, Mismatches: 29, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
95 19 0.12
96 100 0.65
97 34 0.22
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.37
Consensus pattern (95 bp):
AACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAATCAAATT
TTTAAAAATTTATAATTAATTTACTCAAGT
Found at i:7067270 original size:106 final size:106
Alignment explanation
Indices: 7067085--7067298 Score: 365
Period size: 106 Copynumber: 2.0 Consensus size: 106
7067075 TGATTAAATC
7067085 AAAACACTTCCATGGATTTAACATATACATATACAAACATGAATAATATACAAATATTACATTCT
1 AAAACACTTCCATGGATTTAACATATACATATACAAACATGAATAATATACAAATATTACATTCT
*
7067150 ACCCATACTCTTTTTTCCTCTCTAATGTGCACAAATTCTAA
66 AACCATACTCTTTTTTCCTCTCTAATGTGCACAAATTCTAA
* * * *
7067191 AAAACACTTTCATGGATTTAGCATATACATATACAAACGTGAATAATATATAAATATTACATTCT
1 AAAACACTTCCATGGATTTAACATATACATATACAAACATGAATAATATACAAATATTACATTCT
* *
7067256 AACCGTACTCTTTTTTCCTCTCTAATGTGCACAAGTTCTAA
66 AACCATACTCTTTTTTCCTCTCTAATGTGCACAAATTCTAA
7067297 AA
1 AA
7067299 GTTCTTTAAT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 101 1.00
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.35
Consensus pattern (106 bp):
AAAACACTTCCATGGATTTAACATATACATATACAAACATGAATAATATACAAATATTACATTCT
AACCATACTCTTTTTTCCTCTCTAATGTGCACAAATTCTAA
Found at i:7070091 original size:30 final size:30
Alignment explanation
Indices: 7070055--7070112 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
7070045 TGTAGTCAGG
7070055 CCGTGTGTCTCACACGACCAAGAGACACGT
1 CCGTGTGTCTCACACGACCAAGAGACACGT
*
7070085 CCGTGTGTCTCACACGGCCAAGAGACAC
1 CCGTGTGTCTCACACGACCAAGAGACAC
7070113 CCTCGTATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.34, G:0.24, T:0.16
Consensus pattern (30 bp):
CCGTGTGTCTCACACGACCAAGAGACACGT
Found at i:7070124 original size:30 final size:30
Alignment explanation
Indices: 7070055--7070128 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
7070045 TGTAGTCAGG
* *
7070055 CCGTGTGTCTCACACGACCAAGAGACACGT
1 CCGTATGTCTCACACGACCAAGAGACACCT
* *
7070085 CCGTGTGTCTCACACGGCCAAGAGACACC-
1 CCGTATGTCTCACACGACCAAGAGACACCT
7070114 CTCGTATGTCTCACA
1 C-CGTATGTCTCACA
7070129 TAGCCGTGTC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 1 0.03
30 39 0.98
ACGTcount: A:0.24, C:0.35, G:0.22, T:0.19
Consensus pattern (30 bp):
CCGTATGTCTCACACGACCAAGAGACACCT
Found at i:7071363 original size:25 final size:25
Alignment explanation
Indices: 7071333--7071437 Score: 97
Period size: 25 Copynumber: 4.3 Consensus size: 25
7071323 CTCTTAAGCA
7071333 ATATAACGGGAAGCTCATGTGAGCC
1 ATATAACGGGAAGCTCATGTGAGCC
* * * *
7071358 ATATAACGGGAAGCTTATCTGGGCT
1 ATATAACGGGAAGCTCATGTGAGCC
* **
7071383 GTATAACGGGAAGCTCATAAGAGCC
1 ATATAACGGGAAGCTCATGTGAGCC
* * * *
7071408 ATAT-TCAGGAAGCTCAAGCGAGCC
1 ATATAACGGGAAGCTCATGTGAGCC
7071432 A-ATAAC
1 ATATAAC
7071438 AGGTAGCTTT
Statistics
Matches: 62, Mismatches: 17, Indels: 3
0.76 0.21 0.04
Matches are distributed among these distances:
23 2 0.03
24 17 0.27
25 43 0.69
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (25 bp):
ATATAACGGGAAGCTCATGTGAGCC
Found at i:7071468 original size:73 final size:73
Alignment explanation
Indices: 7071391--7071554 Score: 163
Period size: 73 Copynumber: 2.2 Consensus size: 73
7071381 CTGTATAACG
* **
7071391 GGAAGCTCATAAGAGCCATAT-TCAGGAAGCTCAAGCGAGCCAATAACAGGTAGCTTTGAAGAA-
1 GGAAGCTCATAAGAGCCATATATCAGGAAGCTCAAGCGAGCC-ATAACAGGAAGCTCCGAA-AAG
*
7071454 CTATTAATCA
64 CCATTAATCA
* * ** * * * *
7071464 GGAAGCTCCA-GATAGCCATATATTGGGAAGTTCAAGCGAGTCATATCGGGAAGCTCCGAAAAGC
1 GGAAGCT-CATAAGAGCCATATATCAGGAAGCTCAAGCGAGCCATAACAGGAAGCTCCGAAAAGC
7071528 CATTAATCA
65 CATTAATCA
7071537 GGAAGCTCATGAAGAGCC
1 GGAAGCTCAT-AAGAGCC
7071555 TTTAATCGGG
Statistics
Matches: 72, Mismatches: 14, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
72 4 0.06
73 45 0.62
74 23 0.32
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (73 bp):
GGAAGCTCATAAGAGCCATATATCAGGAAGCTCAAGCGAGCCATAACAGGAAGCTCCGAAAAGCC
ATTAATCA
Found at i:7071559 original size:26 final size:26
Alignment explanation
Indices: 7071391--7071578 Score: 78
Period size: 25 Copynumber: 7.7 Consensus size: 26
7071381 CTGTATAACG
*
7071391 GGAAGCTCAT-AAGAGCCA-TATTCA
1 GGAAGCTCATGAAGAGCCATTAATCA
* * *
7071415 GGAAGCTCAAG-CGAGCCAATAA-CA
1 GGAAGCTCATGAAGAGCCATTAATCA
* * * *
7071439 GGTAGCT-TTGAAGAACTATTAATCA
1 GGAAGCTCATGAAGAGCCATTAATCA
* **
7071464 GGAAGCTCCA-G-ATAGCCA-TATATTG
1 GGAAGCT-CATGAAGAGCCATTA-ATCA
* * * * *
7071489 GGAAGTTCAAG-CGAGTCA-T-ATCG
1 GGAAGCTCATGAAGAGCCATTAATCA
* *
7071512 GGAAGCTC-CGAAAAGCCATTAATCA
1 GGAAGCTCATGAAGAGCCATTAATCA
* *
7071537 GGAAGCTCATGAAGAGCCTTTAATCG
1 GGAAGCTCATGAAGAGCCATTAATCA
*
7071563 GGACGCTCAT-AAGAGC
1 GGAAGCTCATGAAGAGC
7071579 TGCGATGTGT
Statistics
Matches: 119, Mismatches: 33, Indels: 23
0.68 0.19 0.13
Matches are distributed among these distances:
22 1 0.01
23 15 0.13
24 35 0.29
25 45 0.38
26 23 0.19
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.20
Consensus pattern (26 bp):
GGAAGCTCATGAAGAGCCATTAATCA
Found at i:7080190 original size:64 final size:64
Alignment explanation
Indices: 7080110--7080229 Score: 168
Period size: 64 Copynumber: 1.9 Consensus size: 64
7080100 GCCTATATCG
* * * ** * *
7080110 GGACGCTCATAAAGAGCTGCGGTATGTCTGCAATACATGCAGGATCAATACCGATCATATAACA
1 GGACGCTCAAAAAGAGCTGCAGTATATCCACAACACATGCAGAATCAATACCGATCATATAACA
*
7080174 GGACGCTCAAAAAGAGCTGCAGTATATCCACAACACATGCAGAATCAATATCGATC
1 GGACGCTCAAAAAGAGCTGCAGTATATCCACAACACATGCAGAATCAATACCGATC
7080230 GGGATACTCG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
64 48 1.00
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (64 bp):
GGACGCTCAAAAAGAGCTGCAGTATATCCACAACACATGCAGAATCAATACCGATCATATAACA
Found at i:7081785 original size:18 final size:18
Alignment explanation
Indices: 7081762--7081825 Score: 70
Period size: 18 Copynumber: 3.9 Consensus size: 18
7081752 TAAAAATTAC
7081762 AAATAATTTAATAAAT--
1 AAATAATTTAATAAATAA
7081778 AAA-AA--TAA-AAATAA
1 AAATAATTTAATAAATAA
7081792 AAATAATTTAATAAATAA
1 AAATAATTTAATAAATAA
*
7081810 AAATAATAT-ATAAATA
1 AAATAATTTAATAAATA
7081826 GACACATGTT
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
12 4 0.10
13 3 0.07
14 3 0.07
15 4 0.10
16 3 0.07
17 10 0.24
18 14 0.34
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATAATTTAATAAATAA
Found at i:7081787 original size:5 final size:6
Alignment explanation
Indices: 7081774--7081815 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
7081764 ATAATTTAAT
**
7081774 AAATAA AAATAA AAATAA AAAT-A ATTTAA TAAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA -AAATAA AAATAA
7081816 TATATAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 3 0.10
6 23 0.77
7 4 0.13
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (6 bp):
AAATAA
Found at i:7081798 original size:30 final size:31
Alignment explanation
Indices: 7081751--7081815 Score: 114
Period size: 30 Copynumber: 2.1 Consensus size: 31
7081741 CAACCCAATC
*
7081751 ATAAAAATTACAAATAATTTAATAAATAAAA
1 ATAAAAATTAAAAATAATTTAATAAATAAAA
7081782 ATAAAAA-TAAAAATAATTTAATAAATAAAA
1 ATAAAAATTAAAAATAATTTAATAAATAAAA
7081812 ATAA
1 ATAA
7081816 TATATAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 26 0.79
31 7 0.21
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.28
Consensus pattern (31 bp):
ATAAAAATTAAAAATAATTTAATAAATAAAA
Found at i:7081964 original size:56 final size:56
Alignment explanation
Indices: 7081878--7081989 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
7081868 TTGGAGACAA
7081878 GAAATGGATACAAATGGAGAATATTAAAGACTTATATTTCAATTATGTGTTAATTT
1 GAAATGGATACAAATGGAGAATATTAAAGACTTATATTTCAATTATGTGTTAATTT
7081934 GAAATGGATACAAATGGAGAATATTAAAGACTTATATTTCAATTATGTGTTAATTT
1 GAAATGGATACAAATGGAGAATATTAAAGACTTATATTTCAATTATGTGTTAATTT
7081990 CAAGACTTAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.38
Consensus pattern (56 bp):
GAAATGGATACAAATGGAGAATATTAAAGACTTATATTTCAATTATGTGTTAATTT
Found at i:7082016 original size:17 final size:17
Alignment explanation
Indices: 7081996--7082056 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
7081986 ATTTCAAGAC
7081996 TTATGTAATATTTTTAA
1 TTATGTAATATTTTTAA
* ***
7082013 TTATGTAGTGATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
*
7082032 CTTATGTAATGTTTTTAA
1 -TTATGTAATATTTTTAA
7082050 TTATGTA
1 TTATGTA
7082057 GTGATTCAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 15 0.47
18 5 0.16
19 4 0.12
20 8 0.25
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.51
Consensus pattern (17 bp):
TTATGTAATATTTTTAA
Found at i:7082016 original size:37 final size:37
Alignment explanation
Indices: 7081974--7082065 Score: 125
Period size: 37 Copynumber: 2.5 Consensus size: 37
7081964 CTTATATTTC
7081974 AATTATGT-GTTAATTTC-AAGACTTATGTAATATTTTT
1 AATTATGTAG-TAA-TTCAAAGACTTATGTAATATTTTT
* *
7082011 AATTATGTAGTGATTCAAAGACTTATGTAATGTTTTT
1 AATTATGTAGTAATTCAAAGACTTATGTAATATTTTT
*
7082048 AATTATGTAGTGATTCAA
1 AATTATGTAGTAATTCAA
7082066 TTTGGATAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
36 3 0.06
37 47 0.92
38 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (37 bp):
AATTATGTAGTAATTCAAAGACTTATGTAATATTTTT
Found at i:7082635 original size:26 final size:25
Alignment explanation
Indices: 7082584--7082635 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
7082574 CGATTGAATC
**
7082584 GATCTAATTTGATTAATCGGTTGTT
1 GATCTAATTTGATTAATCGGAAGTT
*
7082609 GATCTAATTTAGTTTAATCGGAAGTT
1 GATCTAATTT-GATTAATCGGAAGTT
7082635 G
1 G
7082636 GTTAATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (25 bp):
GATCTAATTTGATTAATCGGAAGTT
Found at i:7083226 original size:24 final size:23
Alignment explanation
Indices: 7083183--7083243 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 23
7083173 AATAAGAACA
* **
7083183 ATATTTTAATTTTAGGATATATAT
1 ATATATTAATTTTAAAATATA-AT
7083207 ATATATTAATTTTAAAATATAAT
1 ATATATTAATTTTAAAATATAAT
*
7083230 -TATATGTTATTTTA
1 ATATAT-TAATTTTA
7083244 CTATTATCGT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 5 0.16
23 9 0.28
24 18 0.56
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (23 bp):
ATATATTAATTTTAAAATATAAT
Found at i:7086527 original size:3 final size:3
Alignment explanation
Indices: 7086521--7086588 Score: 100
Period size: 3 Copynumber: 22.7 Consensus size: 3
7086511 TCAGCAACAA
* * *
7086521 CAG CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAA
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG
*
7086569 CAG CAA CAG CAG CAG CAG CA
1 CAG CAG CAG CAG CAG CAG CA
7086589 ACAACAACAA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.40, C:0.34, G:0.26, T:0.00
Consensus pattern (3 bp):
CAG
Done.