Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 26 of 230
Found at i:7086536 original size:6 final size:6
Alignment explanation
Indices: 7086518--7086618 Score: 85
Period size: 6 Copynumber: 16.8 Consensus size: 6
7086508 TGCTCAGCAA
* * * * * * *
7086518 CAACAG CAGCAG CAACAG CAGCAG CAGCAG CAGCAG CAGCAG CAGCAA
1 CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG
* * * * * *
7086566 CAACAG CAACAG CAGCAG CAGCAA CAACAA CAACAA CAACAA CAACAG
1 CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG
7086614 CAACA
1 CAACA
7086619 ACAGCAGCCG
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 85 1.00
ACGTcount: A:0.48, C:0.34, G:0.19, T:0.00
Consensus pattern (6 bp):
CAACAG
Found at i:7086536 original size:9 final size:9
Alignment explanation
Indices: 7086518--7086636 Score: 103
Period size: 9 Copynumber: 13.2 Consensus size: 9
7086508 TGCTCAGCAA
7086518 CAACAGCAG
1 CAACAGCAG
* *
7086527 CAGCAACAG
1 CAACAGCAG
*
7086536 CAGCAGCAG
1 CAACAGCAG
*
7086545 CAGCAGCAG
1 CAACAGCAG
*
7086554 CAGCAGCAG
1 CAACAGCAG
*
7086563 CAACAACAG
1 CAACAGCAG
7086572 CAACAGCAG
1 CAACAGCAG
* *
7086581 CAGCAGCAA
1 CAACAGCAG
* *
7086590 CAACAACAA
1 CAACAGCAG
* *
7086599 CAACAACAA
1 CAACAGCAG
*
7086608 CAACAGCAA
1 CAACAGCAG
7086617 CAACAGCAG
1 CAACAGCAG
**
7086626 CCGCAGCAG
1 CAACAGCAG
7086635 CA
1 CA
7086637 GTCGCCCCAG
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 95 1.00
ACGTcount: A:0.45, C:0.34, G:0.20, T:0.00
Consensus pattern (9 bp):
CAACAGCAG
Found at i:7086593 original size:3 final size:3
Alignment explanation
Indices: 7086563--7086621 Score: 64
Period size: 3 Copynumber: 19.7 Consensus size: 3
7086553 GCAGCAGCAG
* * * * *
7086563 CAA CAA CAG CAA CAG CAG CAG CAG CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
*
7086611 CAG CAA CAA CA
1 CAA CAA CAA CA
7086622 GCAGCCGCAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.56, C:0.34, G:0.10, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:7086659 original size:12 final size:12
Alignment explanation
Indices: 7086512--7086637 Score: 117
Period size: 12 Copynumber: 10.5 Consensus size: 12
7086502 GAGGCATGCT
*
7086512 CAGCAACAACAG
1 CAGCAGCAACAG
7086524 CAGCAGCAACAG
1 CAGCAGCAACAG
*
7086536 CAGCAGCAGCAG
1 CAGCAGCAACAG
*
7086548 CAGCAGCAGCAG
1 CAGCAGCAACAG
*
7086560 CAGCAACAACAG
1 CAGCAGCAACAG
* *
7086572 CAACAGCAGCAG
1 CAGCAGCAACAG
* *
7086584 CAGCAACAACAA
1 CAGCAGCAACAG
* * *
7086596 CAACAACAACAA
1 CAGCAGCAACAG
* *
7086608 CAACAGCAACAA
1 CAGCAGCAACAG
**
7086620 CAGCAGCCGCAG
1 CAGCAGCAACAG
7086632 CAGCAG
1 CAGCAG
7086638 TCGCCCCAGC
Statistics
Matches: 97, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 97 1.00
ACGTcount: A:0.45, C:0.34, G:0.21, T:0.00
Consensus pattern (12 bp):
CAGCAGCAACAG
Found at i:7087429 original size:13 final size:14
Alignment explanation
Indices: 7087396--7087442 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
7087386 GGTAGGTTTG
7087396 TTTGATCTCTTTCA
1 TTTGATCTCTTTCA
7087410 TTTGATCTC-TT-A
1 TTTGATCTCTTTCA
7087422 TATTGATCTCTTTCA
1 T-TTGATCTCTTTCA
7087437 TTTGAT
1 TTTGAT
7087443 GCTTCTCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 2 0.07
13 10 0.33
14 16 0.53
15 2 0.07
ACGTcount: A:0.17, C:0.17, G:0.09, T:0.57
Consensus pattern (14 bp):
TTTGATCTCTTTCA
Found at i:7088407 original size:6 final size:6
Alignment explanation
Indices: 7088396--7088437 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
7088386 TGGCTCAGTT
* * *
7088396 GCAACA GCAACA GCAGCA ACAGCA GCAACA GCAACA G-AACA G
1 GCAACA GCAACA GCAACA GCAACA GCAACA GCAACA GCAACA G
7088438 TAGCTCACAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.48, C:0.31, G:0.21, T:0.00
Consensus pattern (6 bp):
GCAACA
Found at i:7088414 original size:9 final size:9
Alignment explanation
Indices: 7088400--7088428 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
7088390 TCAGTTGCAA
7088400 CAGCAACAG
1 CAGCAACAG
7088409 CAGCAACAG
1 CAGCAACAG
7088418 CAGCAACAG
1 CAGCAACAG
7088427 CA
1 CA
7088429 ACAGAACAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.34, G:0.21, T:0.00
Consensus pattern (9 bp):
CAGCAACAG
Found at i:7088414 original size:15 final size:15
Alignment explanation
Indices: 7088396--7088437 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
7088386 TGGCTCAGTT
7088396 GCAACAGCAACAGCA
1 GCAACAGCAACAGCA
* *
7088411 GCAACAGCAGCAACA
1 GCAACAGCAACAGCA
7088426 GCAACAG-AACAG
1 GCAACAGCAACAG
7088438 TAGCTCACAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 3 0.13
15 20 0.87
ACGTcount: A:0.48, C:0.31, G:0.21, T:0.00
Consensus pattern (15 bp):
GCAACAGCAACAGCA
Found at i:7115531 original size:11 final size:11
Alignment explanation
Indices: 7115511--7115541 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
7115501 TATGCCTAAA
7115511 AAAAACAAAAAC
1 AAAAA-AAAAAC
7115523 AAAAAAAAAAC
1 AAAAAAAAAAC
7115534 AAAAAAAA
1 AAAAAAAA
7115542 CAGGAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.74
12 5 0.26
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:7116848 original size:74 final size:74
Alignment explanation
Indices: 7116529--7117650 Score: 1351
Period size: 73 Copynumber: 14.9 Consensus size: 74
7116519 TTTCAAAAAA
* * * *
7116529 AAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTTATGCCGAGGTATTTCTTTTAAAT
1 AAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA--T-TTTT-AAT
* **
7116594 TTCTG--TTCTTCA
61 TTCTGTCTTTTTTT
* * *
7116606 AAAATCAACTCATAGTACGAAAGGTGAGTTGAGCCTCGGGTCACTCTGAGGTATTTTTAATTTCT
1 AAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCT
**
7116671 GTCTTTTTAAAAA
65 GTCTTTTT---TT
* *
7116684 AAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGATCACGCTGAGG------T-ATTTCG
1 AAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCT
7116742 GTCTTTTTTTT
65 GTC-TTTTTTT
** *
7116753 AAAATCAACTCATAATACAGAGGTGAGTCAAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCGG
1 AAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCTG
7116818 TCTTTTTTT
66 TCTTTTTTT
* *
7116827 AAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGAGTCACGCTGAGGTATTTTTAATTTATG
1 AAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCTG
*
7116892 TCTTTTTGT
66 TCTTTTTTT
*
7116901 AAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTATG
1 AAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCTG
7116966 TCTTTTTTT
66 TCTTTTTTT
*
7116975 -AAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCGG
1 AAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCTG
7117039 TCTTTTTTTTT
66 TC--TTTTTTT
* *
7117050 AAAAATCAACTCATAATAAAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTAT
1 -AAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCT
7117115 GTCTTTTTTTT
65 GTC-TTTTTTT
7117126 AAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTT
1 ---AAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTT
*
7117191 ATGTCTTTTTTT
63 CTGTCTTTTTTT
*
7117203 -AAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTATG
1 AAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCTG
7117267 TC-TTTTTT
66 TCTTTTTTT
* *
7117275 AAAATCAACTCATAATACGAGAGGTGAGTTGAGCATCGGGTCACGTTGAGGTATTTTTAATTTCT
1 AAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCT
7117340 GT-TTTTTTT
65 GTCTTTTTTT
*
7117349 CAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACACTGAGGTATTTTTAATTT
1 --AAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTT
*
7117414 ATGTC-TTTTTT
63 CTGTCTTTTTTT
* * *
7117425 -AAATCAACTCATAATACGAGATGTGAGTTGAGCCTCGGGTCACGCTAAGATATTTCTTTTAAAT
1 AAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA--T-TTTT-AAT
*
7117489 TTCTGTTTTTTTTT
61 TTCTGTCTTTTTTT
* * * * * *
7117503 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGCCATGCTGAGGAATTTCTTTT
1 ----AAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGG--TAT-TTTT
**
7117568 AAATTTCTG--TTTTTCA
58 -AATTTCTGTCTTTTTTT
* * * * *
7117584 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGCCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGG--TCACGCTGAGGTATTTTTAATTT
7117649 CT
63 CT
7117651 ATTTTTCAAA
Statistics
Matches: 942, Mismatches: 64, Indels: 80
0.87 0.06 0.07
Matches are distributed among these distances:
68 29 0.03
69 18 0.02
71 8 0.01
72 12 0.01
73 203 0.22
74 203 0.22
75 29 0.03
76 84 0.09
77 164 0.17
78 121 0.13
79 8 0.01
81 5 0.01
83 57 0.06
85 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (74 bp):
AAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCTG
TCTTTTTTT
Found at i:7117199 original size:228 final size:226
Alignment explanation
Indices: 7116530--7117648 Score: 1384
Period size: 228 Copynumber: 4.9 Consensus size: 226
7116520 TTCAAAAAAA
* * * * *
7116530 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTTATGCCGAGGTATTTCTTTTAAATT
1 AAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA--T-TTTTAATTT
* * * * *
7116595 ---TCTGTTCTTCAAAAATCAACTCATAGTACGAA-AGGTGAGTTGAGCCTCGGGTCACTCTGAG
62 CGGTCTTTTTTTTAAAAATCAACTCATAATA--AAGAGGTGAGTTGAGCCTCGGGTCACGCTGAG
* **
7116656 GTATTTTTAATTTCTGTCTTTTTAAAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTC
125 GTATTTTTAATTTATGTCTTTTT-TTAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTC
* *** * *
7116721 GGATCACGCTGAGGTA--TTT-CGGTCT-T-TTTTTTA
189 GGGTCACGCTGAGGTATTTTTAATTTATGTCTTTTTTT
**
7116754 AAATCAACTCATAATACAGAGGTGAGTCAAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCGGT
1 AAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCGGT
* *
7116819 C-TTTTTTT-AAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGAGTCACGCTGAGGTATTT
66 CTTTTTTTTAAAAATCAACTCATAATAAAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTT
*
7116882 TTAATTTATGTCTTTTTGT--AAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCAC
131 TTAATTTATGTCTTTTTTTAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCAC
7116944 GCTGAGGTATTTTTAATTTATGTCTTTTTTT
196 GCTGAGGTATTTTTAATTTATGTCTTTTTTT
7116975 AAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCGGT
1 AAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCGGT
7117040 CTTTTTTTTTAAAAATCAACTCATAATAAAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATT
66 C-TTTTTTTTAAAAATCAACTCATAATAAAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATT
7117105 TTTAATTTATGTCTTTTTTTTAAAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGT
130 TTTAATTTATGTC-TTTTTTT-AAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGT
7117169 CACGCTGAGGTATTTTTAATTTATGTCTTTTTTT
193 CACGCTGAGGTATTTTTAATTTATGTCTTTTTTT
**
7117203 AAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTATGT
1 AAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCGGT
* * *
7117268 C--TTTTTT-AAAATCAACTCATAATACGAGAGGTGAGTTGAGCATCGGGTCACGTTGAGGTATT
66 CTTTTTTTTAAAAATCAACTCATAATA-AAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATT
* *
7117330 TTTAATTTCTGT-TTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCA
130 TTTAATTTATGTCTTTTTTTAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCA
*
7117394 CACTGAGGTATTTTTAATTTATGTC-TTTTTT
195 CGCTGAGGTATTTTTAATTTATGTCTTTTTTT
* * *
7117425 AAATCAACTCATAATACGAGATGTGAGTTGAGCCTCGGGTCACGCTAAGATATTTCTTTTAAATT
1 AAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA--T-TTTT-AATT
* * ** * * *
7117490 TCTGT-TTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGCCATGCT
61 TCGGTCTTTTTTTT---AAAAATCAACTCATAAT-AAAGAGGTGAGTTGAGCCTCGGGTCACGCT
* * * * * * * *
7117554 GAGGAATTTCTT--TTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCTAGAGGTGAGTTGAG
122 GAGGTATTT-TTAATT-TATGTCTTTTTTTAAAAAATCAACTCATAATACGAGAGGTGAGTTGAG
* * *
7117617 CCTCGGGCCACACGCCGAGGTATTTTCAATTT
185 CCTCGGG--TCACGCTGAGGTATTTTTAATTT
7117649 CTATTTTTCA
Statistics
Matches: 803, Mismatches: 57, Indels: 59
0.87 0.06 0.06
Matches are distributed among these distances:
216 33 0.04
217 18 0.02
218 3 0.00
219 3 0.00
220 58 0.07
221 87 0.11
222 46 0.06
223 124 0.15
224 98 0.12
225 58 0.07
226 4 0.00
227 8 0.01
228 144 0.18
231 2 0.00
232 51 0.06
233 47 0.06
235 19 0.02
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (226 bp):
AAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCGGT
CTTTTTTTTAAAAATCAACTCATAATAAAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTT
TTAATTTATGTCTTTTTTTAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCAC
GCTGAGGTATTTTTAATTTATGTCTTTTTTT
Found at i:7117952 original size:30 final size:29
Alignment explanation
Indices: 7117822--7117945 Score: 142
Period size: 29 Copynumber: 4.2 Consensus size: 29
7117812 CAAAAATAAA
* *
7117822 AAATTACATTTTGACCCCTAAATTTTCCTA
1 AAATTACATTTTGACCCCTAAATTTT-TTG
* * *
7117852 AAATTATATTTTAAGCCCTAAACTTTTTT-
1 AAATTACATTTTGACCCCTAAA-TTTTTTG
* * *
7117881 AAATTACATTTTGACCCATTAACTTTTTG
1 AAATTACATTTTGACCCCTAAATTTTTTG
7117910 AAATTACATTTTGACCCCTAAATTTTCTTG
1 AAATTACATTTTGACCCCTAAATTTT-TTG
7117940 AAATTA
1 AAATTA
7117946 TGTTTTGGCC
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
28 5 0.06
29 40 0.51
30 29 0.37
31 4 0.05
ACGTcount: A:0.34, C:0.18, G:0.05, T:0.44
Consensus pattern (29 bp):
AAATTACATTTTGACCCCTAAATTTTTTG
Found at i:7118343 original size:16 final size:16
Alignment explanation
Indices: 7118293--7118391 Score: 86
Period size: 15 Copynumber: 6.5 Consensus size: 16
7118283 TAGATCCGAG
7118293 AGAAGAAGAGAAAAA-A
1 AGAAGAA-AGAAAAAGA
*
7118309 A-AAGAAAGAAAGA-A
1 AGAAGAAAGAAAAAGA
* *
7118323 AGAAGGAAGAAGAAGA
1 AGAAGAAAGAAAAAGA
7118339 AGAAGAAAGAAAAAGAA
1 AGAAGAAAGAAAAAG-A
*
7118356 AGAAAAAAGAAAAAG-
1 AGAAGAAAGAAAAAGA
7118371 AG-A-AAA-AAAAAGA
1 AGAAGAAAGAAAAAGA
*
7118384 AAAAGAAA
1 AGAAGAAA
7118392 AAGGAAAAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
12 6 0.09
13 4 0.06
14 10 0.14
15 19 0.28
16 15 0.22
17 15 0.22
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AGAAGAAAGAAAAAGA
Found at i:7118390 original size:48 final size:50
Alignment explanation
Indices: 7118301--7118406 Score: 123
Period size: 48 Copynumber: 2.1 Consensus size: 50
7118291 AGAGAAGAAG
*
7118301 AGAAAAAAAAAGAAAGAAAGAAAGAAGGAAGAAGAAGAAGAAGAAA-GAAAA
1 AGAAAAAAAAAGAAAGAAAGAAAGAA-GAAGAAGAAAAAGAA-AAAGGAAAA
7118352 AGAAAGAAAAAAGAAA-AAGAGAAA-AA-AA-AAGAAAAAGAAAAAGGAAAA
1 AGAAA-AAAAAAGAAAGAA-AGAAAGAAGAAGAAGAAAAAGAAAAAGGAAAA
*
7118400 ATAAAAA
1 AGAAAAA
7118407 TAATAAAATA
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
47 5 0.10
48 19 0.38
49 2 0.04
51 9 0.18
52 15 0.30
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (50 bp):
AGAAAAAAAAAGAAAGAAAGAAAGAAGAAGAAGAAAAAGAAAAAGGAAAA
Found at i:7118392 original size:41 final size:45
Alignment explanation
Indices: 7118293--7118394 Score: 133
Period size: 45 Copynumber: 2.3 Consensus size: 45
7118283 TAGATCCGAG
* *
7118293 AGAAGAAGAGAAAAAAAAAGAAAGAAAGAAAGAAGGAAGAAGAAGA
1 AGAAGAA-AGAAAAAGAAAGAAAGAAAGAAAGAAGGAAGAAGAAAA
7118339 AGAAGAAAGAAAAAGAAAGAAA-AAAGAAA-AAGAGAA-AA-AAAA
1 AGAAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAG-GAAGAAGAAAA
7118381 AGAA-AAAGAAAAAG
1 AGAAGAAAGAAAAAG
7118395 GAAAAATAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
41 10 0.19
42 7 0.13
43 5 0.09
44 10 0.19
45 14 0.26
46 7 0.13
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (45 bp):
AGAAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAGGAAGAAGAAAA
Found at i:7118399 original size:18 final size:16
Alignment explanation
Indices: 7118301--7118393 Score: 87
Period size: 16 Copynumber: 5.4 Consensus size: 16
7118291 AGAGAAGAAG
7118301 AGAAAAAAAAAGAAAGAA
1 AGAAAAAAAAAG-AA-AA
** *
7118319 AGAAAGAAGGAAGAAGA
1 AGAAA-AAAAAAGAAAA
* *
7118336 AGAAGAAGAAAGAAAA
1 AGAAAAAAAAAGAAAA
7118352 AGAAAGAAAAAAGAAAAA
1 AGAAA-AAAAAAG-AAAA
7118370 GAGAAAAAAAAAGAAAA
1 -AGAAAAAAAAAGAAAA
7118387 AGAAAAA
1 AGAAAAA
7118394 GGAAAAATAA
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
16 20 0.32
17 15 0.24
18 18 0.29
19 10 0.16
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (16 bp):
AGAAAAAAAAAGAAAA
Found at i:7118409 original size:6 final size:6
Alignment explanation
Indices: 7118293--7118406 Score: 90
Period size: 6 Copynumber: 18.2 Consensus size: 6
7118283 TAGATCCGAG
* * *
7118293 AGAAGA AGAGAAA A-AAAA AGAAAGAA AGAAAGA AGGAAGA AGAAGA AGAAGAA
1 AGAAAA AGA-AAA AGAAAA AG-AA-AA AGAAA-A A-GAAAA AGAAAA AGAA-AA
*
7118346 AGAAAA AGAAAG A-AAAA AGAAAA AGAGAAA A-AAAA AGAAAA AGAAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGA-AAA AGAAAA AGAAAA AGAAAA
*
7118393 AGGAAAA ATAAAA A
1 A-GAAAA AGAAAA A
7118407 TAATAAAATA
Statistics
Matches: 91, Mismatches: 6, Indels: 22
0.76 0.05 0.18
Matches are distributed among these distances:
5 12 0.13
6 46 0.51
7 26 0.29
8 7 0.08
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (6 bp):
AGAAAA
Found at i:7118716 original size:23 final size:24
Alignment explanation
Indices: 7118670--7118721 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
7118660 CCAATCCAGC
*
7118670 AAAAAAGAAAAAGAGAAAGAAAGG
1 AAAAAAGAAAAAGAAAAAGAAAGG
7118694 AAAAAAGAAGAAA-AAAAAG-AAGG
1 AAAAAAGAA-AAAGAAAAAGAAAGG
7118717 AAAAA
1 AAAAA
7118722 GGGTTCAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 9 0.35
24 14 0.54
25 3 0.12
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (24 bp):
AAAAAAGAAAAAGAAAAAGAAAGG
Found at i:7118909 original size:28 final size:28
Alignment explanation
Indices: 7118869--7118926 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
7118859 ATATTTTTGT
*
7118869 ATTTATATTTTAAATTTAATTTAATTTCA
1 ATTTATATTTTAAATTTAA-ATAATTTCA
7118898 ATTT-TATTTTAAATTTAAATAATTTCA
1 ATTTATATTTTAAATTTAAATAATTTCA
7118925 AT
1 AT
7118927 AAATAAGGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 10 0.36
28 14 0.50
29 4 0.14
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (28 bp):
ATTTATATTTTAAATTTAAATAATTTCA
Found at i:7119276 original size:31 final size:32
Alignment explanation
Indices: 7119241--7119303 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
7119231 AAAAAATTTC
*
7119241 TCGTGTTTC-AAAATT-TTCGTTTTTTTTAAAA
1 TCGTGTTTCTAAAATTCTT-GTATTTTTTAAAA
7119272 TCGTGTTTCTAAAATTCTTGTATTTTTTAAAA
1 TCGTGTTTCTAAAATTCTTGTATTTTTTAAAA
7119304 AAAATTCGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 9 0.31
32 18 0.62
33 2 0.07
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.54
Consensus pattern (32 bp):
TCGTGTTTCTAAAATTCTTGTATTTTTTAAAA
Found at i:7124046 original size:11 final size:13
Alignment explanation
Indices: 7124030--7124063 Score: 54
Period size: 11 Copynumber: 2.8 Consensus size: 13
7124020 AATTTTGTGG
7124030 AAAAATTTCG-T-
1 AAAAATTTCGTTC
7124041 AAAAATTTCGTTC
1 AAAAATTTCGTTC
7124054 AAAAATTTCG
1 AAAAATTTCG
7124064 ACGTTTGGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 1 0.05
13 10 0.48
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (13 bp):
AAAAATTTCGTTC
Found at i:7125199 original size:33 final size:33
Alignment explanation
Indices: 7125130--7125440 Score: 195
Period size: 33 Copynumber: 8.7 Consensus size: 33
7125120 ATATAAAGGG
*
7125130 GGTTGCTAAGTGCTGATTCCCC----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
7125157 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
** *
7125190 GGTTGCTAAGTGCTGATTCCACCGTATTTAAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A---ATCAT-T---GGT
*
7125232 GGTTGCTAAGTGCTGATTCCCCGAATCATTAGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * *
7125265 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--AT-CAT-T---GGT
7125307 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* *
7125340 GGTTGCTAAGTGTTGATTCCACC-ATATCTTTGAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCGA-ATC-----AT-TG---GT
*
7125383 GGTTGCTAAGTGCTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
*
7125416 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCC-CCGA
7125441 TAACGGTTGA
Statistics
Matches: 226, Mismatches: 21, Indels: 67
0.72 0.07 0.21
Matches are distributed among these distances:
27 22 0.10
31 2 0.01
32 2 0.01
33 83 0.37
34 15 0.07
35 2 0.01
36 4 0.02
37 7 0.03
38 6 0.03
39 4 0.02
40 4 0.02
41 6 0.03
42 48 0.21
43 21 0.09
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
Found at i:7125244 original size:75 final size:75
Alignment explanation
Indices: 7125155--7125439 Score: 489
Period size: 75 Copynumber: 3.8 Consensus size: 75
7125145 ATTCCCCCAA
*
7125155 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTA
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
7125220 AAATGTGAAG
66 AAATGTGAAG
*
7125230 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTAGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
7125295 AAATGTGAAG
66 AAATGTGAAG
* *
7125305 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGTTGATTCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT-TT
* *
7125370 TGAATGTGAAA
65 TAAATGTGAAG
* *
7125381 GGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGAATCCACCG
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCG
7125440 ATAACGGTTG
Statistics
Matches: 198, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
75 132 0.67
76 66 0.33
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.32
Consensus pattern (75 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
AAATGTGAAG
Found at i:7128611 original size:363 final size:363
Alignment explanation
Indices: 7127946--7128654 Score: 1159
Period size: 363 Copynumber: 2.0 Consensus size: 363
7127936 TCACATATAT
** * * *
7127946 GCATATTTTACCAAATATGTTATCTAGATCCATTTATCCATGTACTTATCATCATTTGACCATTT
1 GCATATTTTACCAAATATCCTATCTAGATCCATTCATCCATGTACTTACCATCACTTGACCATTT
* *
7128011 CAAACACACATCAAGTATATTAAGACTATTTACACATCAAAACGTACCAAACATAGCCCTTTAAA
66 CAAACACACATCAAGTATATTAAAACTATTTACACATCAAAACATACCAAACATAGCCCTTTAAA
* *
7128076 TGGCTATTTACAACCAAAATATGTATATGTCATCAATGACCAAGTTAACCTATACATGCCATTAT
131 TGGCTATTTACAACCAAAAAATGTATATGCCATCAATGACCAAGTTAACCTATACATGCCATTAT
* * *
7128141 AACCAAAATTAGTTTCATGCTTGTACCGAAAATGGGTCGGTGGATAGTGTGAGTGATCTCTACCA
196 AACCAAAATTAGTTTCATACTTGTACCAAAAATGGGCCGGTGGATAGTGTGAGTGATCTCTACCA
*
7128206 AGCTTCCAACCCGATGAGCCTCCGAGAATTATAAAACAGAGGAAATACAACTGAATAAACACTTA
261 AGCTTCCAACCCAATGAGCCTCCGAGAATTATAAAACAGAGGAAATACAACTGAATAAACACTTA
* **
7128271 GTGCTTAGTAAGTTCGTATAAAACAGAGGATCAAGATA
326 GTACTTAGTAAGCCCGTATAAAACAGAGGATCAAGATA
* * *
7128309 GCATATTTTATCAAATATCCTATCTTGATCCATTCATTCATGTACTTACCATCACTTGACCATTT
1 GCATATTTTACCAAATATCCTATCTAGATCCATTCATCCATGTACTTACCATCACTTGACCATTT
7128374 CAAACACACATCAAGTATATTAAAACTATTTACACATCAAAACATACCAAACATAGCCCTTTAAA
66 CAAACACACATCAAGTATATTAAAACTATTTACACATCAAAACATACCAAACATAGCCCTTTAAA
* *
7128439 TGGCTATTTACAACCAAAAAATGTATATGCCATCAATGGCTAAGTTAACCTATACATGCCATTAT
131 TGGCTATTTACAACCAAAAAATGTATATGCCATCAATGACCAAGTTAACCTATACATGCCATTAT
* * * *
7128504 AACCAAAATTAGTTTCATATTTGTATCAAAAATGGGCCGGTGGATCGTGTGAGTGATCT-TCGCC
196 AACCAAAATTAGTTTCATACTTGTACCAAAAATGGGCCGGTGGATAGTGTGAGTGATCTCT-ACC
* *
7128568 AAGCTTCCAACCCAATGAGCCTCCGAGAATTATAAAACAGAGGACATACAACTGAATAAGCACTT
260 AAGCTTCCAACCCAATGAGCCTCCGAGAATTATAAAACAGAGGAAATACAACTGAATAAACACTT
7128633 AGTACTTAGTAAGCCCGTATAA
325 AGTACTTAGTAAGCCCGTATAA
7128655 TGGAAAATTT
Statistics
Matches: 318, Mismatches: 27, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
362 1 0.00
363 317 1.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (363 bp):
GCATATTTTACCAAATATCCTATCTAGATCCATTCATCCATGTACTTACCATCACTTGACCATTT
CAAACACACATCAAGTATATTAAAACTATTTACACATCAAAACATACCAAACATAGCCCTTTAAA
TGGCTATTTACAACCAAAAAATGTATATGCCATCAATGACCAAGTTAACCTATACATGCCATTAT
AACCAAAATTAGTTTCATACTTGTACCAAAAATGGGCCGGTGGATAGTGTGAGTGATCTCTACCA
AGCTTCCAACCCAATGAGCCTCCGAGAATTATAAAACAGAGGAAATACAACTGAATAAACACTTA
GTACTTAGTAAGCCCGTATAAAACAGAGGATCAAGATA
Found at i:7129139 original size:24 final size:23
Alignment explanation
Indices: 7129118--7129192 Score: 89
Period size: 24 Copynumber: 3.1 Consensus size: 23
7129108 TGCGAGCATA
7129118 TAACAGGTAGCTCTGAAGAGCACT
1 TAAC-GGTAGCTCTGAAGAGCACT
*
7129142 TAACGAGTAGCTCCG-AGTAGCACT
1 TAACG-GTAGCTCTGAAG-AGCACT
*
7129166 TAACGGGTAACTCTGAAGAGCACT
1 TAAC-GGTAGCTCTGAAGAGCACT
7129190 TAA
1 TAA
7129193 TTAGGAAGCA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
23 3 0.07
24 38 0.86
25 3 0.07
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (23 bp):
TAACGGTAGCTCTGAAGAGCACT
Found at i:7129279 original size:26 final size:25
Alignment explanation
Indices: 7129238--7129286 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
7129228 CAAGCAAGCA
*
7129238 ATAACGGGAAGCTCACAAAGAGCCT
1 ATAACGGAAAGCTCACAAAGAGCCT
7129263 ATAATCGGAAAGCTCACAAAGAGC
1 ATAA-CGGAAAGCTCACAAAGAGC
7129287 AATATATGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.12
Consensus pattern (25 bp):
ATAACGGAAAGCTCACAAAGAGCCT
Found at i:7133936 original size:32 final size:30
Alignment explanation
Indices: 7133888--7133964 Score: 88
Period size: 32 Copynumber: 2.6 Consensus size: 30
7133878 AGTTATTCAT
7133888 AAAATTAAT-T-AT-ATAAAAAATATTTTA
1 AAAATTAATATAATGATAAAAAATATTTTA
* **
7133915 AAAACTTAAATATGATGATAAATTATATTTTA
1 AAAA-TT-AATATAATGATAAAAAATATTTTA
7133947 AAAATTAATATAATGATA
1 AAAATTAATATAATGATA
7133965 CATGATATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 4 0.10
28 2 0.05
29 3 0.07
30 12 0.29
31 4 0.10
32 17 0.40
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.39
Consensus pattern (30 bp):
AAAATTAATATAATGATAAAAAATATTTTA
Found at i:7133963 original size:30 final size:30
Alignment explanation
Indices: 7133907--7133987 Score: 92
Period size: 30 Copynumber: 2.6 Consensus size: 30
7133897 TATATAAAAA
* *
7133907 ATATTTTAAAAACTTAAATATGATGATAAATT
1 ATATTTTAAAAA-TT-AATATAATGATAAATG
*
7133939 ATATTTTAAAAATTAATATAATGATACATG
1 ATATTTTAAAAATTAATATAATGATAAATG
7133969 ATA-TTTAAATAATCTAATA
1 ATATTTTAAA-AAT-TAATA
7133988 AATTAGTACA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
29 6 0.14
30 19 0.43
31 7 0.16
32 12 0.27
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.41
Consensus pattern (30 bp):
ATATTTTAAAAATTAATATAATGATAAATG
Found at i:7133998 original size:31 final size:31
Alignment explanation
Indices: 7133943--7134018 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 31
7133933 TAAATTATAT
*
7133943 TTTAAA-AAT-TAATATAATGATACATGATA
1 TTTAAATAATCTAATATAATGATACATGAAA
* *
7133972 TTTAAATAATCTAATA-AATTAGTACATTAAA
1 TTTAAATAATCTAATATAATGA-TACATGAAA
*
7134003 TATAAATTAATCTAAT
1 TTTAAA-TAATCTAAT
7134019 TTTTTATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 6 0.15
30 7 0.18
31 17 0.44
32 9 0.23
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.39
Consensus pattern (31 bp):
TTTAAATAATCTAATATAATGATACATGAAA
Found at i:7136598 original size:31 final size:31
Alignment explanation
Indices: 7136563--7136641 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
7136553 TTAATATACT
*
7136563 ATTTGGTATCTTAATTTGG-TTTCAAAGTTCA
1 ATTTGGTATCTAAATTTGGATTT-AAAGTTCA
*
7136594 ATTTGGTATCTAAATTTGGATTTAAGGTTCA
1 ATTTGGTATCTAAATTTGGATTTAAAGTTCA
* *
7136625 CTTTGGTACCTAAATTT
1 ATTTGGTATCTAAATTT
7136642 TTTTAATTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
31 40 0.93
32 3 0.07
ACGTcount: A:0.27, C:0.10, G:0.16, T:0.47
Consensus pattern (31 bp):
ATTTGGTATCTAAATTTGGATTTAAAGTTCA
Found at i:7137566 original size:12 final size:13
Alignment explanation
Indices: 7137531--7137569 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 13
7137521 TTTCGAATAA
*
7137531 TTCTTCTTC-TTC
1 TTCTTCTTCTTTT
7137543 TTCTTCTTCTTTT
1 TTCTTCTTCTTTT
7137556 TTCTT-TTCTTTT
1 TTCTTCTTCTTTT
7137568 TT
1 TT
7137570 GTTAACTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 18 0.72
13 7 0.28
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TTCTTCTTCTTTT
Found at i:7142243 original size:6 final size:6
Alignment explanation
Indices: 7142234--7142268 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
7142224 TTTTTTCTTT
*
7142234 TAAAAA TAAAAA TAAGAA TAAAAA TAAAAA TAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAA
7142269 CCTTGGTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:7147787 original size:105 final size:105
Alignment explanation
Indices: 7147602--7147795 Score: 253
Period size: 105 Copynumber: 1.8 Consensus size: 105
7147592 GATACGAGGT
* * *
7147602 TCCCGATTGACTGTGATCCTGCATTTGTTGCGGACACACCATAGCTCTTACGAGCGTCACGATAT
1 TCCCGATTGACTGTGATCCTGCATATGTTGCGGACACACCACAACTCTTACGAGCGTCACGATAT
* * * *
7147667 TTGGCTTTCATGAGCTTCCTGTTAATAGCTCTTCGAAGCA
66 ATGGCTCTCAGGAGCTTCCCGTTAATAGCTCTTCGAAGCA
** * * * **
7147707 TCCCGATTGGTTGTGATCCTGCATATGTTGTGGACACACCACAACTCTTATGAGTGTCTTGATAT
1 TCCCGATTGACTGTGATCCTGCATATGTTGCGGACACACCACAACTCTTACGAGCGTCACGATAT
*
7147772 ATGGCTCTCCGGAGCTTCCCGTTA
66 ATGGCTCTCAGGAGCTTCCCGTTA
7147796 TATGGTTTTT
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
105 74 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (105 bp):
TCCCGATTGACTGTGATCCTGCATATGTTGCGGACACACCACAACTCTTACGAGCGTCACGATAT
ATGGCTCTCAGGAGCTTCCCGTTAATAGCTCTTCGAAGCA
Found at i:7147797 original size:25 final size:25
Alignment explanation
Indices: 7147769--7147951 Score: 112
Period size: 25 Copynumber: 7.4 Consensus size: 25
7147759 AGTGTCTTGA
*
7147769 TATATGGCTCTCCGGAGCTTCCCGT
1 TATATGGCTCTCCAGAGCTTCCCGT
* ** * *
7147794 TATATGG-TTTTTACGAGCTTCTCGA
1 TATATGGCTCTCCA-GAGCTTCCCGT
* * * *
7147819 TA-ACTAGCTCT-TATGAGTTTCCTGAT
1 TATA-TGGCTCTCCA-GAGCTTCCCG-T
*
7147845 TA-ATGGCTCTCCAGAGCTTCCCGA
1 TATATGGCTCTCCAGAGCTTCCCGT
*
7147869 TAT-TGGCTCGT--ATGAGCTTCCTGT
1 TATATGGCTC-TCCA-GAGCTTCCCGT
*
7147893 TA-ATGGCTCTCCAGAGCTTCCTGT
1 TATATGGCTCTCCAGAGCTTCCCGT
* * *
7147917 TACATGGCTCACAAGAGCTTCCCGT
1 TATATGGCTCTCCAGAGCTTCCCGT
7147942 TATATGGCTC
1 TATATGGCTC
7147952 GAAAGAACTT
Statistics
Matches: 122, Mismatches: 24, Indels: 24
0.72 0.14 0.14
Matches are distributed among these distances:
23 2 0.02
24 41 0.34
25 73 0.60
26 6 0.05
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.35
Consensus pattern (25 bp):
TATATGGCTCTCCAGAGCTTCCCGT
Found at i:7147899 original size:24 final size:22
Alignment explanation
Indices: 7147837--7147951 Score: 86
Period size: 24 Copynumber: 4.7 Consensus size: 22
7147827 TCTTATGAGT
7147837 TTCCTGATTAATGGCTCTCCAGAGC
1 TTCCTG-TTAATGGCTCT--AGAGC
* * *
7147862 TTCCCGATATTGGCTCGTATGAGC
1 TTCCTGTTAATGGCTC-TA-GAGC
7147886 TTCCTGTTAATGGCTCTCCAGAGC
1 TTCCTGTTAATGGCTCT--AGAGC
*
7147910 TTCCTGTTACATGGCTCACAAGAGC
1 TTCCTGTTA-ATGGCT--CTAGAGC
*
7147935 TTCCCGTTATATGGCTC
1 TTCCTGTTA-ATGGCTC
7147952 GAAAGAACTT
Statistics
Matches: 74, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
23 3 0.04
24 38 0.51
25 32 0.43
27 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.21, T:0.33
Consensus pattern (22 bp):
TTCCTGTTAATGGCTCTAGAGC
Found at i:7152846 original size:22 final size:22
Alignment explanation
Indices: 7152821--7152862 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7152811 GCCGTGGTCT
7152821 GTGGAGGACCGAAGGTGGATCG
1 GTGGAGGACCGAAGGTGGATCG
* *
7152843 GTGGAGGACTGGAGGTGGAT
1 GTGGAGGACCGAAGGTGGAT
7152863 TCACTGGACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.10, G:0.52, T:0.17
Consensus pattern (22 bp):
GTGGAGGACCGAAGGTGGATCG
Found at i:7157414 original size:103 final size:102
Alignment explanation
Indices: 7157237--7157603 Score: 531
Period size: 103 Copynumber: 3.6 Consensus size: 102
7157227 AACCGTTGTT
* * * *
7157237 GGTGGATTCCGCACTTAGC-ACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGG
1 GGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGGG
* * *
7157301 AATCAGCACTTAGCAACCCCCTTCACATTTCAGATGC
66 AATCAGCACTTAGCAACCCCCTTCACATTTAAAATAC
** * **
7157338 GGTGGAATCAGCACTTAGCAACCACCAAATGGGTCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 GGTGGAATCAGCACTTAGCAACCACC-AATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
7157403 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
65 GAATCAGCACTTAGCAACCCCC-TTCACATTTAAAATAC
* * **
7157442 GGTGGAATCAACACTTAGCAACCACCAAT-AGGTAGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 GGTGGAATCAGCACTTAGCAACCACCAATGA-ATAGGGGAATCAGCACACAGCAACCCCTCGGGG
7157506 GAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATAC
65 GAATCAGCACTTAGCAACCCCCTT-CACATTTAAAATAC
*
7157545 GGTGGAATCAGCACTTAGCAACCATCAATGAATAGGGGAATCAGCACACAGCAACCCCT
1 GGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCT
7157604 TTATATGCAA
Statistics
Matches: 242, Mismatches: 18, Indels: 10
0.90 0.07 0.04
Matches are distributed among these distances:
101 17 0.07
102 8 0.03
103 178 0.74
104 39 0.16
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.18
Consensus pattern (102 bp):
GGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGGG
AATCAGCACTTAGCAACCCCCTTCACATTTAAAATAC
Found at i:7162983 original size:19 final size:19
Alignment explanation
Indices: 7162954--7162990 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
7162944 AAGTGGAAGC
7162954 AAACTTGAAAG-ACAAAAG
1 AAACTTGAAAGAACAAAAG
7162972 AAACTATGAAAGAACAAAA
1 AAACT-TGAAAGAACAAAA
7162991 AACCACAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 6 0.35
20 6 0.35
ACGTcount: A:0.65, C:0.11, G:0.14, T:0.11
Consensus pattern (19 bp):
AAACTTGAAAGAACAAAAG
Found at i:7167776 original size:16 final size:17
Alignment explanation
Indices: 7167749--7167783 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
7167739 TAACATAAAG
*
7167749 ACCAATTTTTTTATTTA
1 ACCAATTTTTTTATCTA
7167766 ACCAA-TTTTTTATCTA
1 ACCAATTTTTTTATCTA
7167782 AC
1 AC
7167784 ATGTAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.51
Consensus pattern (17 bp):
ACCAATTTTTTTATCTA
Found at i:7168205 original size:79 final size:79
Alignment explanation
Indices: 7168074--7168232 Score: 300
Period size: 79 Copynumber: 2.0 Consensus size: 79
7168064 CTACACTAAT
* *
7168074 ATGTAAAGTTTATTTTAATCTTTTTTATTAAAAATTGCTTTAATTTAATTTTTATACACTACAAA
1 ATGTAAAGTTTATTTTAATCTTTTTTATTAAAAATTGCTTTAAATTAATTTTTATACACTAAAAA
7168139 TATAATTTATCCTG
66 TATAATTTATCCTG
7168153 ATGTAAAGTTTATTTTAATCTTTTTTATTAAAAATTGCTTTAAATTAATTTTTATACACTAAAAA
1 ATGTAAAGTTTATTTTAATCTTTTTTATTAAAAATTGCTTTAAATTAATTTTTATACACTAAAAA
7168218 TATAATTTATCCTG
66 TATAATTTATCCTG
7168232 A
1 A
7168233 CTTGACTCGT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.50
Consensus pattern (79 bp):
ATGTAAAGTTTATTTTAATCTTTTTTATTAAAAATTGCTTTAAATTAATTTTTATACACTAAAAA
TATAATTTATCCTG
Found at i:7172537 original size:15 final size:16
Alignment explanation
Indices: 7172503--7172544 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
7172493 TTATGGTGCC
*
7172503 AAAATAATTTTTTATT
1 AAAATAATTATTTATT
*
7172519 AAAATAA-TATTTCTT
1 AAAATAATTATTTATT
*
7172534 AAAAAAATTAT
1 AAAATAATTAT
7172545 ATCAACAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
AAAATAATTATTTATT
Found at i:7175585 original size:80 final size:79
Alignment explanation
Indices: 7175448--7175604 Score: 260
Period size: 80 Copynumber: 2.0 Consensus size: 79
7175438 GTGGTAATGT
* * * *
7175448 GGCTAAACATGGACATGACATGTGGGCAAACAAGGGAATGACATGTATCCTAGCTTCAATTATTC
1 GGCTAAACATGGACATGACACGTGGGCAAACAAAGGAATGAAATGTATCCTAACTTCAATTATTC
7175513 TAAAAAAATTTTACC
66 T-AAAAAATTTTACC
*
7175528 GGCTAAACATGGACATGACACGTGGGCAAACAAAGGAATGAAATGTATCTTAACTTCAATTATTC
1 GGCTAAACATGGACATGACACGTGGGCAAACAAAGGAATGAAATGTATCCTAACTTCAATTATTC
7175593 TAAAAAATTTTA
66 TAAAAAATTTTA
7175605 AAAAGTTGAA
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
79 11 0.15
80 61 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (79 bp):
GGCTAAACATGGACATGACACGTGGGCAAACAAAGGAATGAAATGTATCCTAACTTCAATTATTC
TAAAAAATTTTACC
Found at i:7175722 original size:25 final size:24
Alignment explanation
Indices: 7175669--7175732 Score: 58
Period size: 25 Copynumber: 2.6 Consensus size: 24
7175659 AAATCTATAA
* *
7175669 AAAAATTTAAAAATAAGAAACTTTT
1 AAAAATTAAAAAATAAGAAAC-TTC
*
7175694 AAAAATTGAAAAATATAGACAA-TTC
1 AAAAATTAAAAAATA-AGA-AACTTC
*
7175719 AAAAAATAAAAAAT
1 AAAAATTAAAAAAT
7175733 TTATAATTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 28 0.85
26 3 0.09
27 2 0.06
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.25
Consensus pattern (24 bp):
AAAAATTAAAAAATAAGAAACTTC
Found at i:7175944 original size:36 final size:34
Alignment explanation
Indices: 7175868--7175944 Score: 79
Period size: 36 Copynumber: 2.2 Consensus size: 34
7175858 GTTGATCCAT
*
7175868 TATTATTTATTTTTGAATTTCTAAATATTTTTTGA
1 TATT-TTTATTTTTGAATTTCTAAATATTTATTGA
7175903 T-TTTTTATATTTTGTAATTTTCTAAAT-TTTAATT-A
1 TATTTTTAT-TTTTG-AA-TTTCTAAATATTT-ATTGA
7175938 TATTTTT
1 TATTTTT
7175945 TTAATTTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
33 5 0.14
34 7 0.19
35 8 0.22
36 16 0.44
ACGTcount: A:0.27, C:0.03, G:0.04, T:0.66
Consensus pattern (34 bp):
TATTTTTATTTTTGAATTTCTAAATATTTATTGA
Found at i:7178693 original size:3 final size:3
Alignment explanation
Indices: 7178685--7178728 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
7178675 GAGATTTTGA
7178685 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7178729 ATTCACTAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7179808 original size:47 final size:47
Alignment explanation
Indices: 7179739--7179832 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
7179729 AGATCTAAGA
*
7179739 TTTTAGGAACCAGTTAACAAAATATTTTATGCGCATGACTTATCTGC
1 TTTTAGGAACCAGTTAACAAAATATTTTATGCGCATAACTTATCTGC
7179786 TTTTAGGAACCAGTTAACAAAATATTTTATGCGCATAACTTATCTGC
1 TTTTAGGAACCAGTTAACAAAATATTTTATGCGCATAACTTATCTGC
7179833 CAATATTTCC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (47 bp):
TTTTAGGAACCAGTTAACAAAATATTTTATGCGCATAACTTATCTGC
Found at i:7180299 original size:2 final size:2
Alignment explanation
Indices: 7180292--7180319 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7180282 TGGACTAAGG
7180292 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7180320 ACACACACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7180483 original size:2 final size:2
Alignment explanation
Indices: 7180476--7180510 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7180466 GATGATTATA
7180476 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
7180511 ATTCAGAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:7203763 original size:37 final size:37
Alignment explanation
Indices: 7203713--7203807 Score: 181
Period size: 37 Copynumber: 2.6 Consensus size: 37
7203703 TTAATTTTTT
7203713 TAAATTAAAATAGAGTTATTAAATGAGAATAGTTTAC
1 TAAATTAAAATAGAGTTATTAAATGAGAATAGTTTAC
*
7203750 TAAATTAAAATAGAGTTATTAAATGAGAATAGTTTAT
1 TAAATTAAAATAGAGTTATTAAATGAGAATAGTTTAC
7203787 TAAATTAAAATAGAGTTATTA
1 TAAATTAAAATAGAGTTATTA
7203808 TTTAATTAGA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.49, C:0.01, G:0.13, T:0.37
Consensus pattern (37 bp):
TAAATTAAAATAGAGTTATTAAATGAGAATAGTTTAC
Found at i:7203812 original size:18 final size:19
Alignment explanation
Indices: 7203712--7203807 Score: 115
Period size: 19 Copynumber: 5.2 Consensus size: 19
7203702 CTTAATTTTT
7203712 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
7203731 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
*
7203749 CTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
7203768 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
7203786 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
7203805 TTA
1 TTA
7203808 TTTAATTAGA
Statistics
Matches: 61, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
18 29 0.48
19 32 0.52
ACGTcount: A:0.49, C:0.01, G:0.12, T:0.38
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:7203946 original size:18 final size:19
Alignment explanation
Indices: 7203883--7203941 Score: 84
Period size: 19 Copynumber: 3.2 Consensus size: 19
7203873 CTTAATTTTT
*
7203883 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGATTTA
* *
7203902 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGATTTA
7203920 TTAAATTAAAATAGATTTA
1 TTAAATTAAAATAGATTTA
7203939 TTA
1 TTA
7203942 CTTAATTAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
18 15 0.44
19 19 0.56
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (19 bp):
TTAAATTAAAATAGATTTA
Found at i:7204217 original size:20 final size:20
Alignment explanation
Indices: 7204194--7204231 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7204184 TTATACGTTT
7204194 TTAAATAGT-TTTACTTTAGG
1 TTAAATA-TATTTACTTTAGG
7204214 TTAAATATATTTACTTTA
1 TTAAATATATTTACTTTA
7204232 ATAATAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53
Consensus pattern (20 bp):
TTAAATATATTTACTTTAGG
Found at i:7204600 original size:28 final size:28
Alignment explanation
Indices: 7204567--7204631 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
7204557 TTTTTTTTGT
**
7204567 ATATTTTGGTAAAT-AAAAAATTTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
*
7204594 ATAATTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
7204622 ATATTTTGGT
1 ATATTTTGGT
7204632 TATTTTTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
27 13 0.39
28 20 0.61
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.42
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:7206178 original size:29 final size:31
Alignment explanation
Indices: 7206140--7206204 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 31
7206130 AACATCGAAA
*
7206140 TTATATAT-AAATTTTGATTTTATGTAATT-
1 TTATATATAAAATTTTGATTTAATGTAATTC
*
7206169 TTATATATAAAATTTTGATTTAATTTAATTC
1 TTATATATAAAATTTTGATTTAATGTAATTC
7206200 TTATA
1 TTATA
7206205 AATTAACATA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 8 0.25
30 19 0.59
31 5 0.16
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.57
Consensus pattern (31 bp):
TTATATATAAAATTTTGATTTAATGTAATTC
Found at i:7207435 original size:20 final size:19
Alignment explanation
Indices: 7207410--7207452 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
7207400 ATTAGTTACT
* *
7207410 TATTTACTATTTTGATTTTC
1 TATTTAATATATTG-TTTTC
7207430 TATTTAATATATTGTTTTC
1 TATTTAATATATTGTTTTC
7207449 TATT
1 TATT
7207453 GTTTATATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.65
Consensus pattern (19 bp):
TATTTAATATATTGTTTTC
Found at i:7213002 original size:30 final size:30
Alignment explanation
Indices: 7212966--7213026 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
7212956 GAATTAGGGA
7212966 AAAAATACAGGGAAACGAACGTAGATCCTT
1 AAAAATACAGGGAAACGAACGTAGATCCTT
*
7212996 AAAAATACAGGGAAACGAACGTAGATTCTT
1 AAAAATACAGGGAAACGAACGTAGATCCTT
7213026 A
1 A
7213027 CTTCAAATCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.18
Consensus pattern (30 bp):
AAAAATACAGGGAAACGAACGTAGATCCTT
Found at i:7216827 original size:25 final size:25
Alignment explanation
Indices: 7216793--7216874 Score: 92
Period size: 25 Copynumber: 3.3 Consensus size: 25
7216783 ATTTAATCAA
* *
7216793 CAGCTCGCATGAGCTTTCTGATACT
1 CAGCTCGCATGAGCTTCCCGATACT
* *
7216818 CAGCTCGCATGAGCTTCCCGTTATT
1 CAGCTCGCATGAGCTTCCCGATACT
* * * *
7216843 TAGCTCGCATGAGCTTCTCGTTATT
1 CAGCTCGCATGAGCTTCCCGATACT
7216868 CAGCTCG
1 CAGCTCG
7216875 AAAGAACTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (25 bp):
CAGCTCGCATGAGCTTCCCGATACT
Found at i:7217022 original size:19 final size:19
Alignment explanation
Indices: 7216985--7217022 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7216975 GATATGAACC
*
7216985 AATACATGAATATATATGA
1 AATACATGAATATAGATGA
7217004 AATACATGGAA-ATAGATGA
1 AATACAT-GAATATAGATGA
7217023 TACATGTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.53, C:0.05, G:0.16, T:0.26
Consensus pattern (19 bp):
AATACATGAATATAGATGA
Found at i:7217666 original size:13 final size:13
Alignment explanation
Indices: 7217645--7217678 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
7217635 TGTCCAACCA
7217645 AACCCAATTACCC
1 AACCCAATTACCC
*
7217658 AACCTAATTACCC
1 AACCCAATTACCC
7217671 AACCCAAT
1 AACCCAAT
7217679 AAAACTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.18
Consensus pattern (13 bp):
AACCCAATTACCC
Found at i:7217713 original size:39 final size:39
Alignment explanation
Indices: 7217659--7217775 Score: 209
Period size: 39 Copynumber: 3.0 Consensus size: 39
7217649 CAATTACCCA
7217659 ACCTAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1 ACCTAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
7217698 ACCTAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1 ACCTAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
* *
7217737 ACCCAATTA-CCAACCCAATAAAAATAAAACTAAAGTCT
1 ACCTAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
7217775 A
1 A
7217776 ACTCTTAAGT
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
38 29 0.38
39 47 0.62
ACGTcount: A:0.50, C:0.27, G:0.03, T:0.20
Consensus pattern (39 bp):
ACCTAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
Found at i:7217959 original size:37 final size:37
Alignment explanation
Indices: 7217909--7217983 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
7217899 TGCTAATTTC
* *
7217909 AAGAATTACGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTACGTAATATTTTTAATTATGTAATGATTCA
* *
7217946 AAGACTTATGTAATATTTTTAATTATGTAATGATTCA
1 AAGAATTACGTAATATTTTTAATTATGTAATGATTCA
7217983 A
1 A
7217984 TTCGGGTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.44
Consensus pattern (37 bp):
AAGAATTACGTAATATTTTTAATTATGTAATGATTCA
Found at i:7218005 original size:18 final size:18
Alignment explanation
Indices: 7217982--7218048 Score: 91
Period size: 18 Copynumber: 3.7 Consensus size: 18
7217972 GTAATGATTC
*
7217982 AATTCGGGTAATTCAGG-T
1 AATTCGGTTAATT-AGGTT
*
7218000 AATTCGGTTAATTTGGTT
1 AATTCGGTTAATTAGGTT
7218018 AATTCGGTTAATTAGGTT
1 AATTCGGTTAATTAGGTT
*
7218036 AGTTCGGTTAATT
1 AATTCGGTTAATT
7218049 TTTAACCAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
17 2 0.05
18 42 0.95
ACGTcount: A:0.25, C:0.07, G:0.24, T:0.43
Consensus pattern (18 bp):
AATTCGGTTAATTAGGTT
Found at i:7218011 original size:9 final size:9
Alignment explanation
Indices: 7217982--7218048 Score: 82
Period size: 9 Copynumber: 7.4 Consensus size: 9
7217972 GTAATGATTC
*
7217982 AATTCGGGT
1 AATTCGGTT
7217991 AATTCAGG-T
1 AATTC-GGTT
7218000 AATTCGGTT
1 AATTCGGTT
*
7218009 AATTTGGTT
1 AATTCGGTT
7218018 AATTCGGTT
1 AATTCGGTT
*
7218027 AATTAGGTT
1 AATTCGGTT
*
7218036 AGTTCGGTT
1 AATTCGGTT
7218045 AATT
1 AATT
7218049 TTTAACCAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
8 2 0.04
9 46 0.92
10 2 0.04
ACGTcount: A:0.25, C:0.07, G:0.24, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:7220343 original size:104 final size:104
Alignment explanation
Indices: 7220163--7220533 Score: 602
Period size: 104 Copynumber: 3.6 Consensus size: 104
7220153 TAACCGTTAT
** *
7220163 CGGTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 CGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
7220228 AATCAGCACATAACAACCCCCTTTTTCATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATA
*
7220267 CGGTGGATATCGCACTTAGCATCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 CGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
7220332 AATCAGCACATAGCAACCCCC-TTTTCATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATA
*
7220370 CGGTGGATATCGCACTTAGCACCACCAATGAAATCGAGGAATCAGCACTTAGCAACCCCTCGGGG
1 CGGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
**
7220435 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATA
* * **
7220475 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 CGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
7220534 TTTATATACA
Statistics
Matches: 250, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
103 46 0.18
104 162 0.65
105 41 0.16
106 1 0.00
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (104 bp):
CGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATA
Found at i:7222186 original size:42 final size:42
Alignment explanation
Indices: 7222108--7222188 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
7222098 TAGCATGGGT
* * *
7222108 CACATGACAAAGCCACACGCCCGTGTGCCAGGCCGTGTGTCA
1 CACATGACAAAGACACACGCCCGTGTCCCAGCCCGTGTGTCA
* *
7222150 CACATGACTAAGACACACGCCCGTG-CCTCTGCCCGTGTG
1 CACATGACAAAGACACACGCCCGTGTCC-CAGCCCGTGTG
7222189 GACAAAATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 1 0.03
42 32 0.97
ACGTcount: A:0.22, C:0.37, G:0.25, T:0.16
Consensus pattern (42 bp):
CACATGACAAAGACACACGCCCGTGTCCCAGCCCGTGTGTCA
Found at i:7223200 original size:24 final size:24
Alignment explanation
Indices: 7223142--7223221 Score: 72
Period size: 24 Copynumber: 3.2 Consensus size: 24
7223132 GCTTATCCGG
* *
7223142 GCAATATAACAGGAAGCTCACAAAGA
1 GCAAT-TAATAGGTAGCTC-CAAAGA
* * *
7223168 GC-CTATAATGGGTAGCTCTAAAGA
1 GCAAT-TAATAGGTAGCTCCAAAGA
*
7223192 GCAATTAATAGGTAGCTCCGAAGA
1 GCAATTAATAGGTAGCTCCAAAGA
7223216 GCAATT
1 GCAATT
7223222 TAACGGGAAG
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
24 29 0.66
25 13 0.30
26 2 0.05
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20
Consensus pattern (24 bp):
GCAATTAATAGGTAGCTCCAAAGA
Found at i:7225379 original size:21 final size:22
Alignment explanation
Indices: 7225355--7225401 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
7225345 ACGTTTTTGT
*
7225355 AAAATA-TATTAAAAAATAAAA
1 AAAATATTATAAAAAAATAAAA
*
7225376 AAAA-ATTATAAAAAAATGAAA
1 AAAATATTATAAAAAAATAAAA
*
7225397 TAAAT
1 AAAAT
7225402 TGATAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (22 bp):
AAAATATTATAAAAAAATAAAA
Found at i:7234800 original size:22 final size:22
Alignment explanation
Indices: 7234775--7234866 Score: 105
Period size: 22 Copynumber: 4.2 Consensus size: 22
7234765 AAATTCAATA
* *
7234775 TCAATTTCTTTCAAAAATTCTC
1 TCAATTCCCTTCAAAAATTCTC
* *
7234797 TCAATTCCTTTCAAAATTTCTC
1 TCAATTCCCTTCAAAAATTCTC
*
7234819 TCAATTCCCTTCAAAATTTC-C
1 TCAATTCCCTTCAAAAATTCTC
* *
7234840 ATCAATTTCCTTCCAAAATTCTC
1 -TCAATTCCCTTCAAAAATTCTC
7234863 TCAA
1 TCAA
7234867 ACTCTCAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
21 1 0.02
22 60 0.97
23 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.41
Consensus pattern (22 bp):
TCAATTCCCTTCAAAAATTCTC
Found at i:7234832 original size:44 final size:44
Alignment explanation
Indices: 7234775--7234866 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
7234765 AAATTCAATA
* * *
7234775 TCAATTTCTTTCAAAAATTCTC-TCAA-TTCCTTTCAAAATTTCTC
1 TCAATTCCCTTCAAAAATTC-CATCAATTTCCTTCCAAAA-TTCTC
*
7234819 TCAATTCCCTTCAAAATTTCCATCAATTTCCTTCCAAAATTCTC
1 TCAATTCCCTTCAAAAATTCCATCAATTTCCTTCCAAAATTCTC
7234863 TCAA
1 TCAA
7234867 ACTCTCAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 30 0.71
45 11 0.26
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.41
Consensus pattern (44 bp):
TCAATTCCCTTCAAAAATTCCATCAATTTCCTTCCAAAATTCTC
Found at i:7234882 original size:30 final size:30
Alignment explanation
Indices: 7234841--7234897 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
7234831 AAAATTTCCA
* *
7234841 TCAATTTCCTTCCAAAATTCTCTCAAACTC
1 TCAAATTCCTTCCAAAATCCTCTCAAACTC
7234871 TCAAATTCCTTCCAAAATCCTCTCAAA
1 TCAAATTCCTTCCAAAATCCTCTCAAA
7234898 TTCCTTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (30 bp):
TCAAATTCCTTCCAAAATCCTCTCAAACTC
Found at i:7234895 original size:22 final size:22
Alignment explanation
Indices: 7234868--7234909 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7234858 TTCTCTCAAA
*
7234868 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCAAAAATC
7234890 CTCTCAAATTCCTTCAAAAA
1 CTCTCAAATTCCTTCAAAAA
7234910 ATCTCCAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.31
Consensus pattern (22 bp):
CTCTCAAATTCCTTCAAAAATC
Found at i:7235015 original size:29 final size:30
Alignment explanation
Indices: 7234953--7235015 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 30
7234943 TAAATTTCAT
* *
7234953 TTTTTTAAGAAAATTTTAAAATTTTTTATT
1 TTTTTTAAGAAAATTTTAAAATTTTTAATA
*
7234983 TTTTTTAA-ATAATTTTAAAATTTTTAATA
1 TTTTTTAAGAAAATTTTAAAATTTTTAATA
7235012 TTTT
1 TTTT
7235016 CAACAATGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 22 0.73
30 8 0.27
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (30 bp):
TTTTTTAAGAAAATTTTAAAATTTTTAATA
Found at i:7240047 original size:47 final size:47
Alignment explanation
Indices: 7239993--7240492 Score: 797
Period size: 47 Copynumber: 10.6 Consensus size: 47
7239983 TATTTGAATA
*
7239993 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
7240040 AATGTGAAAGTGTATATATGTGATAAGGGCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
7240087 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
7240136 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
7240183 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
7240230 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
7240279 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
7240326 -ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
7240372 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-AGTGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGA-TGTGATG
* * * * *
7240419 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTTATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
7240466 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
7240493 TCCCGAAGGG
Statistics
Matches: 428, Mismatches: 18, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
46 47 0.11
47 291 0.68
48 1 0.00
49 89 0.21
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:7240119 original size:96 final size:94
Alignment explanation
Indices: 7239993--7240492 Score: 815
Period size: 96 Copynumber: 5.3 Consensus size: 94
7239983 TATTTGAATA
7239993 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
7240058 TGTGATAAGGGCGAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
7240087 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
7240152 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
7240183 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
* *
7240248 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
7240279 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
7240343 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
*
7240372 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-AGTGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-TGTGATGAATGTGAAAGTGTATAT
* * * *
7240436 ATGTGATAGGGCCGAGTGGCCAACGTTATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATG
* *
7240466 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
7240493 TCCCGAAGGG
Statistics
Matches: 384, Mismatches: 16, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
92 1 0.00
93 79 0.21
94 122 0.32
95 11 0.03
96 171 0.45
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:7240152 original size:143 final size:143
Alignment explanation
Indices: 7239993--7240492 Score: 837
Period size: 143 Copynumber: 3.5 Consensus size: 143
7239983 TATTTGAATA
* *
7239993 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
7240058 TGTGATAAGGGCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
7240123 GGCCGATGTGATG
131 GGCCGATGTGATG
7240136 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
7240201 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
7240266 GGCCGATGTGATG
131 GGCCGATGTGATG
* *
7240279 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
7240343 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
7240406 GGCC-AGTGTGATG
131 GGCCGA-TGTGATG
* * * * * *
7240419 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTTATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
7240484 TGTGATAAG
66 TGTGATAAG
7240493 TCCCGAAGGG
Statistics
Matches: 340, Mismatches: 15, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
139 1 0.00
140 73 0.21
141 25 0.07
142 56 0.16
143 185 0.54
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:7240181 original size:22 final size:22
Alignment explanation
Indices: 7240153--7240228 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
7240143 AAGTGTATAT
7240153 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
7240175 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
7240199 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
7240222 ATGTGAT
1 ATGTGAT
7240229 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:7242296 original size:84 final size:84
Alignment explanation
Indices: 7242155--7242357 Score: 370
Period size: 84 Copynumber: 2.4 Consensus size: 84
7242145 CAAACTTGCT
* * *
7242155 ACTGTAGCGAAATTGCGTCCACAAGGGCACGATTTGACACTATTTGCTCAGAAACGTCAAAAAAA
1 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAA
7242220 ATTATTTCCTACATGACCA
66 ATTATTTCCTACATGACCA
7242239 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAA
1 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAA
7242304 ATTATTTCCTACATGACCA
66 ATTATTTCCTACATGACCA
*
7242323 ACTGTAGTGAAATCGCGTCCACGAGGGCGCGATTT
1 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTT
7242358 CACAATTTCT
Statistics
Matches: 115, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 115 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (84 bp):
ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAA
ATTATTTCCTACATGACCA
Found at i:7242488 original size:124 final size:124
Alignment explanation
Indices: 7242279--7242505 Score: 350
Period size: 124 Copynumber: 1.8 Consensus size: 124
7242269 GATTTGACAC
* **
7242279 TATTTGCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGTGAAATCGCGTCCA
1 TATTTCCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCAAAATCGCGTCCA
* * *
7242344 CGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCATGGTATCAACGATTTTATAT
66 CGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCATGGTATCAACGATTTTATAT
7242403 TATTTCCTCAGAAAACGTCAAAAAAAATTATTT-CTCACATGACC-ACTGTAGCAAAATCGCGTC
1 TATTTCCTCAG-AAACGTCAAAAAAAATTATTTCCT-ACATGACCAACTGTAGCAAAATCGCGTC
* *
7242466 CACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATC
64 CACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATC
7242506 CTAGTAGAAG
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
124 64 0.69
125 29 0.31
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.30
Consensus pattern (124 bp):
TATTTCCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCAAAATCGCGTCCA
CGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCATGGTATCAACGATTTTATAT
Found at i:7242531 original size:124 final size:125
Alignment explanation
Indices: 7242267--7242546 Score: 345
Period size: 124 Copynumber: 2.3 Consensus size: 125
7242257 CCACGAGGGC
* * **
7242267 GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGTG
1 GCGATTTCACACTATTTCCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCA
* * * *
7242332 AAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCATGGTATCAA
66 AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCATAGTATCAA
* * *
7242392 -CGATTTTATATTATTTCCTCAGAAAACGTCAAAAAAAATTATTT-CTCACATGACC-ACTGTAG
1 GCGATTTCACACTATTTCCTCAG-AAACGTCAAAAAAAATTATTTCCT-ACATGACCAACTGTAG
* * * *
7242454 CAAAATCGCGTCCACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCTAGTA-GAA
64 CAAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCATAGTATCAA
* *
7242515 GCGATTTCCCACTATTTAAC-CAGAAACGTCAA
1 GCGATTTCACACTATTT-CCTCAGAAACGTCAA
7242547 CTCGAAAAAA
Statistics
Matches: 132, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
123 11 0.08
124 91 0.69
125 30 0.23
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (125 bp):
GCGATTTCACACTATTTCCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCA
AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCATAGTATCAA
Found at i:7243377 original size:31 final size:31
Alignment explanation
Indices: 7243342--7243414 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
7243332 AAGGTAACTT
*
7243342 AATAACTTAGTAACTTAAATAAAAACTCTTG
1 AATAATTTAGTAACTTAAATAAAAACTCTTG
* * *
7243373 AATAATTTAGTTACTTAAATGAAAACTTTTG
1 AATAATTTAGTAACTTAAATAAAAACTCTTG
7243404 AATAATTTAGT
1 AATAATTTAGT
7243415 GATCATTTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.38
Consensus pattern (31 bp):
AATAATTTAGTAACTTAAATAAAAACTCTTG
Found at i:7244004 original size:15 final size:13
Alignment explanation
Indices: 7243980--7244016 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7243970 ATATATATTT
7243980 AAAAATT-ATAT-
1 AAAAATTAATATA
7243991 AAAAATATAATATA
1 AAAAAT-TAATATA
7244005 AAAAATTAATAT
1 AAAAATTAATAT
7244017 GGGCGAGCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 6 0.26
12 1 0.04
13 10 0.43
14 6 0.26
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAAATTAATATA
Found at i:7244126 original size:13 final size:13
Alignment explanation
Indices: 7244108--7244142 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
7244098 GGGCTGGACC
7244108 CAGGCCTAACAAA
1 CAGGCCTAACAAA
7244121 CAGGCCTAACAAA
1 CAGGCCTAACAAA
*
7244134 TAGGCCTAA
1 CAGGCCTAA
7244143 ATTTTTACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.43, C:0.29, G:0.17, T:0.11
Consensus pattern (13 bp):
CAGGCCTAACAAA
Found at i:7245697 original size:46 final size:44
Alignment explanation
Indices: 7245595--7245702 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
7245585 TGTCTTTGAC
** * * *
7245595 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
* *
7245639 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGTCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
7245685 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
7245703 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:7246686 original size:16 final size:16
Alignment explanation
Indices: 7246667--7246699 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7246657 TTCTATTCTG
*
7246667 TTTCTTTTCTTTCTTT
1 TTTCTATTCTTTCTTT
7246683 TTTCTATTCTTTCTTT
1 TTTCTATTCTTTCTTT
7246699 T
1 T
7246700 GTTTTATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTCTATTCTTTCTTT
Found at i:7246721 original size:5 final size:5
Alignment explanation
Indices: 7246708--7246779 Score: 62
Period size: 5 Copynumber: 14.4 Consensus size: 5
7246698 TTGTTTTATG
7246708 TATATA TATAA TATAA TATAA TAT-A T-TAA TGATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
* *
7246756 CATAA TCATTAC TATAA TATAA TA
1 TATAA T-A-TAA TATAA TATAA TA
7246780 ATATTTTTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 34 0.61
6 10 0.18
7 3 0.05
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (5 bp):
TATAA
Found at i:7246733 original size:19 final size:19
Alignment explanation
Indices: 7246709--7246751 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
7246699 TGTTTTATGT
7246709 ATATATATAAT-ATAATATA
1 ATATAT-TAATGATAATATA
7246728 ATATATTAATGATAATATA
1 ATATATTAATGATAATATA
7246747 ATATA
1 ATATA
7246752 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
ATATATTAATGATAATATA
Found at i:7246761 original size:24 final size:24
Alignment explanation
Indices: 7246715--7246780 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
7246705 ATGTATATAT
* * *
7246715 ATAATATAATATAATATATTAATG
1 ATAATATAATATAATAAAATAATC
7246739 ATAATATAATATAA-AAACATAATC
1 ATAATATAATATAATAAA-ATAATC
*
7246763 ATTACTATAATATAATAA
1 A-TAATATAATATAATAA
7246781 TATTTTTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
23 2 0.06
24 19 0.54
25 12 0.34
26 2 0.06
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.36
Consensus pattern (24 bp):
ATAATATAATATAATAAAATAATC
Found at i:7248547 original size:37 final size:40
Alignment explanation
Indices: 7248456--7248590 Score: 114
Period size: 40 Copynumber: 3.4 Consensus size: 40
7248446 ACTAGTTTGG
* *
7248456 CACCCAGTACCTCATCGGATAATTCAAAGTAATAAGTTGA
1 CACCCAGTGCCTCATCGGATAAATCAAAGTAATAAGTTGA
* * * *
7248496 CACACAGTGTCTCATCGGCTAAATCGAAGT-A-AA-TTGA
1 CACCCAGTGCCTCATCGGATAAATCAAAGTAATAAGTTGA
* * * ** * *
7248533 CACCCAATGCCTCATCGAATTAATTTGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGGA-TAAATCAAAGTAATAAGTTGA
*
7248574 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
7248591 ACTCGAAGTC
Statistics
Matches: 75, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
37 18 0.24
38 11 0.15
39 1 0.01
40 26 0.35
41 19 0.25
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (40 bp):
CACCCAGTGCCTCATCGGATAAATCAAAGTAATAAGTTGA
Found at i:7250116 original size:42 final size:43
Alignment explanation
Indices: 7250063--7250180 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 43
7250053 CATTTGAGAT
* **
7250063 TTACGTGTAAGACCATGTTTGGGACATTGGTGTCG-TATATGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATATGA
* * * *
7250105 TTACGTGTAAGACCCTGTCTGGGACAGTGGCATCGTTGTTTGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATATGA
* **
7250148 TTACATGTAAGACCACATCTGGGACATTGGCAT
1 TTACGTGTAAGACCATGTCTGGGACATTGGCAT
7250181 TGTACGAACT
Statistics
Matches: 63, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 30 0.48
43 33 0.52
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATATGA
Found at i:7258018 original size:16 final size:15
Alignment explanation
Indices: 7257993--7258026 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
7257983 ATGCAAACAT
7257993 AATAAATTAAATATAA
1 AATAAATT-AATATAA
*
7258009 AATAATTTAATATAA
1 AATAAATTAATATAA
7258024 AAT
1 AAT
7258027 TATATATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAAATTAATATAA
Found at i:7258020 original size:15 final size:15
Alignment explanation
Indices: 7257997--7258026 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7257987 AAACATAATA
7257997 AATTAAATATAAAAT
1 AATTAAATATAAAAT
*
7258012 AATTTAATATAAAAT
1 AATTAAATATAAAAT
7258027 TATATATTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AATTAAATATAAAAT
Found at i:7265362 original size:18 final size:18
Alignment explanation
Indices: 7265339--7265431 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
7265329 CCCAACTATT
*
7265339 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
7265357 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
* *
7265375 GTATATGTGAATAGTACT
1 GTATACGTGAATAGTACC
* *
7265393 GTATATGTGAATAGTGCC
1 GTATACGTGAATAGTACC
7265411 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
7265429 GTA
1 GTA
7265432 AAAGGTCGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:7265391 original size:36 final size:36
Alignment explanation
Indices: 7265339--7265431 Score: 150
Period size: 36 Copynumber: 2.6 Consensus size: 36
7265329 CCCAACTATT
*
7265339 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
* * *
7265375 GTATATGTGAATAGTACTGTATATGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
7265411 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
7265432 AAAGGTCGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:7273796 original size:18 final size:18
Alignment explanation
Indices: 7273773--7273865 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
7273763 CAATCCCAAC
*
7273773 TACTGTATACGTGAACAG
1 TACTGTATACGTGAATAG
7273791 TACTGTATACGTGAATAG
1 TACTGTATACGTGAATAG
* *
7273809 TGCCGTATACGTGAATAG
1 TACTGTATACGTGAATAG
7273827 TACTGTATACGTGAATAG
1 TACTGTATACGTGAATAG
*
7273845 TGCTGTATACGTGAATAG
1 TACTGTATACGTGAATAG
7273863 TAC
1 TAC
7273866 CGTAAACGGT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (18 bp):
TACTGTATACGTGAATAG
Found at i:7276329 original size:32 final size:32
Alignment explanation
Indices: 7276292--7276368 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
7276282 ATGCATGTGT
* * **
7276292 GTAACTTTTCATCTTCAAGTCTCTTTGCATTA
1 GTAACTTTTCATATTCAAGCCTCTTCACATTA
* * *
7276324 TTAACTCTTCATATTCAAGCCTCTTCACATTC
1 GTAACTTTTCATATTCAAGCCTCTTCACATTA
7276356 GTAACTTTTCATA
1 GTAACTTTTCATA
7276369 ATTTATTTTG
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (32 bp):
GTAACTTTTCATATTCAAGCCTCTTCACATTA
Found at i:7280840 original size:32 final size:32
Alignment explanation
Indices: 7280802--7280879 Score: 95
Period size: 32 Copynumber: 2.4 Consensus size: 32
7280792 CATGCATGTG
* * **
7280802 TGTAACTTTTCATCTTCAAGTCTCTTTGCATT
1 TGTAACTTTTCATATTCAAGCCTCTTCACATT
*
7280834 AT-TAACTCTTCATATTCAAGCCTCTTCACATT
1 -TGTAACTTTTCATATTCAAGCCTCTTCACATT
7280866 TGTAACTTTTCATA
1 TGTAACTTTTCATA
7280880 ATTTATTTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
31 1 0.03
32 36 0.95
33 1 0.03
ACGTcount: A:0.24, C:0.23, G:0.06, T:0.46
Consensus pattern (32 bp):
TGTAACTTTTCATATTCAAGCCTCTTCACATT
Found at i:7281723 original size:42 final size:43
Alignment explanation
Indices: 7281648--7281731 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 43
7281638 ATTTTAAGAT
7281648 AAATAATAACTAACTAAAATAATAAATATATATCAATTATTTA
1 AAATAATAACTAACTAAAATAATAAATATATATCAATTATTTA
* *
7281691 AAATAATAATTAATTAAAA-AATAAATATATATCAATTATTT
1 AAATAATAACTAACTAAAATAATAAATATATATCAATTATTT
7281732 TGAAAATTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 22 0.56
43 17 0.44
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (43 bp):
AAATAATAACTAACTAAAATAATAAATATATATCAATTATTTA
Found at i:7282339 original size:15 final size:17
Alignment explanation
Indices: 7282310--7282354 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
7282300 AATTTGTTAT
*
7282310 ATAAATTTATTTAATA-C
1 ATAAATTT-TTTAATAGA
7282327 A-AAATTTTTTAATAGA
1 ATAAATTTTTTAATAGA
7282343 ATAAATTTTTTA
1 ATAAATTTTTTA
7282355 TTTATAAGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 7 0.28
16 7 0.28
17 11 0.44
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
ATAAATTTTTTAATAGA
Found at i:7282517 original size:34 final size:34
Alignment explanation
Indices: 7282474--7282541 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
7282464 TACCTGATTC
7282474 ATGTTTTATTGTTTAGGATCCATGTCCTGCATAT
1 ATGTTTTATTGTTTAGGATCCATGTCCTGCATAT
7282508 ATGTTTTATTGTTTAGGATCCATGTCCTGCATAT
1 ATGTTTTATTGTTTAGGATCCATGTCCTGCATAT
7282542 GCGATTGGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.21, C:0.15, G:0.18, T:0.47
Consensus pattern (34 bp):
ATGTTTTATTGTTTAGGATCCATGTCCTGCATAT
Found at i:7305577 original size:85 final size:83
Alignment explanation
Indices: 7305381--7306094 Score: 626
Period size: 85 Copynumber: 8.5 Consensus size: 83
7305371 TCTTCTTTAG
* * *
7305381 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAA
1 CCCGCACA--CCAAGCACCGAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGCGCCAA
* *
7305445 GTTGCCGATGGTGTCCGAGGCT
62 GGTGCCGATGGTGCCCGAGGCT
* * * * *
7305467 CCCGCACCTCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCACCAA
1 CCCGCA-CACCAAG-CACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-CGCCAA
7305531 GGTGCCGATGGTGCCCGAGGCT
62 GGTGCCGATGGTGCCCGAGGCT
** * * * ***
7305553 CCCGCACGACCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTT
1 CCCGCAC-ACCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCC-AAGG
*
7305618 TGCCGATGGTGCCCGAGCCT
64 TGCCGATGGTGCCCGAGGCT
* *** * * * *
7305638 CTCGCACGACCAAGGGTCTAGGTTGCCGATGGTGCCCGAGGTTCCGGCAC-ATCCAAGCACCAAG
1 CCCGCAC-ACCAAGCACCGAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCGCCAAG
* *
7305702 GTGTCGATGGTGCACGAGGCT
63 GTGCCGATGGTGCCCGAGGCT
* * * * * **
7305723 CCCGCACATCCCAGCACCTAGGAGCCGATGGTGGCCGAGGCTCCCGCACGACCAAG-GCCTATTT
1 CCCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCCAAGGT
7305787 GCCGATGGTG-CCGAGGCT
65 GCCGATGGTGCCCGAGGCT
** * * * * * *
7305805 CCCGCACGACCAAG-GGCTAGTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
1 CCCGCAC-ACCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCCAAGG-
* * *
7305869 TGTCGATGGTGCGCGAGGTT
64 TGCCGATGGTGCCCGAGGCT
* * * * *
7305889 CTCGGACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT-CCGCACGACCAAG-GCCTAGGT
1 CCCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCCAAGGT
** *
7305952 GCCGACAGTGTCCGAGGCT
65 GCCGATGGTGCCCGAGGCT
* *
7305971 CCCGC-CATCATAGCACCGAGGTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAG-GCCTAGGT
1 CCCGCACACCA-AGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCCAAGG-
7306033 TGCCGATGGTGCCCGAGGCT
64 TGCCGATGGTGCCCGAGGCT
* *
7306053 -CCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGA-GCTCC
1 CCCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCC
7306095 TGCAATACCA
Statistics
Matches: 515, Mismatches: 91, Indels: 48
0.79 0.14 0.07
Matches are distributed among these distances:
80 9 0.02
81 80 0.16
82 84 0.16
83 37 0.07
84 59 0.11
85 158 0.31
86 87 0.17
87 1 0.00
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (83 bp):
CCCGCACACCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCGCCAAGGTG
CCGATGGTGCCCGAGGCT
Found at i:7305591 original size:42 final size:42
Alignment explanation
Indices: 7305395--7306094 Score: 615
Period size: 43 Copynumber: 16.7 Consensus size: 42
7305385 CACATCCCAG
*
7305395 GCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAA
1 GCACCTAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAA
* * * ** *
7305438 GCACCAAGTTGCCGATGGTGTCCGAGGCTCCCGCACCTCCTA
1 GCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* * *
7305480 GCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGA
1 G-CACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
*
7305523 GCCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
1 G-CACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** * * *
7305566 GGGCCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAA
1 GCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** ** * *
7305608 GGGCCTATTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAA
1 GCACCTA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
*** * *
7305651 GGGTCTAGGTTGCCGATGGTGCCCGAGGTTCCGGCAC-ATCCAA
1 GCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
* * * *
7305694 GCACCAAGGTGTCGATGGTGCACGAGGCTCCCGCAC-ATCCCA
1 GCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
* *
7305736 GCACCTAGGAGCCGATGGTGGCCGAGGCTCCCGCACGACCAA
1 GCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* **
7305778 G-GCCTATTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAA
1 GCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** * * *
7305818 G-GGCTAGTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAA
1 GCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** * * * * *
7305859 GGGCCTAGGTTGTCGATGGTGCGCGAGGTTCTCGGAC-ATCCAA
1 GCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
* *
7305902 GCACCAAGGTGCCGATGGTGCTCGAGGCT-CCGCACGACCAA
1 GCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* ** * *
7305943 G-GCCTAGGTGCCGACAGTGTCCGAGGCTCCCGC-C-ATCATA
1 GCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-A
*
7305983 GCACCGAGGTGCCGATGGTG-CCGAGGCTCCCGCACGACCAA
1 GCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* *
7306024 G-GCCTAGGTTGCCGATGGTGCCCGAGGCT-CCGCAC-ATCGAA
1 GCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
* *
7306065 GCACCGAGGTGCCGATGGCGCCCGA-GCTCC
1 GCACCTAGGTGCCGATGGTGCCCGAGGCTCC
7306095 TGCAATACCA
Statistics
Matches: 546, Mismatches: 88, Indels: 48
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.01
40 84 0.15
41 101 0.18
42 169 0.31
43 188 0.34
44 1 0.00
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (42 bp):
GCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
Found at i:7305622 original size:128 final size:126
Alignment explanation
Indices: 7305381--7306058 Score: 589
Period size: 128 Copynumber: 5.4 Consensus size: 126
7305371 TCTTCTTTAG
* **
7305381 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAA
1 CCCGCACAT-CCAAGCACCAAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCAA
* * ** * * *
7305445 GTTGCCGATGGTGTCCGAGGCTCCCGCACCTCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
63 GGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAG-CACCTAGGTGCCGATGGTGCCCGAGGCT
* *
7305510 CCCGCACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGG
1 CCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCAAGG
* ** ** *
7305575 TGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGCCT
65 TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCACCTA-GGTGCCGATGGTGCCCGAGGCT
* *** * * * **
7305638 CTCGCACGA-CCAAGGGTCTAGGTTGCCGATGGTGCCCGAGGTTCCGGCAC-ATCCAAGCACCAA
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCAA
* * * *
7305701 GGTGTCGATGGT-GCACGAGGCTCCCGCAC-ATCCCAGCACCTAGGAGCCGATGGTGGCCGAGGC
63 GGTGCCGATGGTGGC-CGAGGCTCCCGCACGA-CCAAGCACCTAGGTGCCGATGGTGCCCGAGGC
7305764 T
126 T
* * ** * *
7305765 CCCGCACGA-CCAAG-GCCTATTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGG-CTAGT
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCAAGG
* * * ** * * *
7305826 TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGCGCGAGGTT
65 TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCT
* * * *
7305889 CTCGGACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT-CCGCACGACCAA-GGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCAAGGT
** * * *
7305952 GCCGACAGTGTCCGAGGCTCCCGC-C-ATCATAGCACCGAGGTGCCGATGGTG-CCGAGGCT
66 GCCGATGGTGGCCGAGGCTCCCGCACGACCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCT
* *
7306011 CCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCCCGAGGCT-CCGCAC
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC
7306059 ATCGAAGCAC
Statistics
Matches: 444, Mismatches: 86, Indels: 45
0.77 0.15 0.08
Matches are distributed among these distances:
121 5 0.01
122 41 0.09
123 49 0.11
124 55 0.12
125 62 0.14
126 11 0.02
127 41 0.09
128 154 0.35
129 26 0.06
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (126 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCAAGGT
GCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCACCTAGGTGCCGATGGTGCCCGAGGCT
Found at i:7318700 original size:20 final size:20
Alignment explanation
Indices: 7318657--7318700 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
7318647 TTAAGATACT
* *
7318657 TTTAAAATAATTTTTTTATT
1 TTTAAAATAATTTTTTAATG
7318677 TTTAAAATAATTTTTTAATG
1 TTTAAAATAATTTTTTAATG
7318697 TTTA
1 TTTA
7318701 TTTTAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTAAAATAATTTTTTAATG
Found at i:7333162 original size:20 final size:20
Alignment explanation
Indices: 7333121--7333162 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
7333111 CTCTTTGAGA
* *
7333121 AGTGAAACTGTAGGAGAAAG
1 AGTGAAACTGGAGGAAAAAG
7333141 AGTGAAA-TGGAGGAAAACAG
1 AGTGAAACTGGAGGAAAA-AG
7333161 AG
1 AG
7333163 GCTTTGAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.48, C:0.05, G:0.36, T:0.12
Consensus pattern (20 bp):
AGTGAAACTGGAGGAAAAAG
Found at i:7333259 original size:13 final size:13
Alignment explanation
Indices: 7333241--7333265 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7333231 TGTTTATATG
7333241 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
7333254 TTTTTCTTTTTT
1 TTTTTCTTTTTT
7333266 AAATTTCTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:7342144 original size:14 final size:14
Alignment explanation
Indices: 7342125--7342153 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7342115 ATTGGGTTTC
7342125 TTTTTTT-CTTTTT
1 TTTTTTTCCTTTTT
7342138 TTTTTTTCCTTTTT
1 TTTTTTTCCTTTTT
7342152 TT
1 TT
7342154 GCTCTGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTTTTTCCTTTTT
Found at i:7343984 original size:51 final size:51
Alignment explanation
Indices: 7343900--7343996 Score: 122
Period size: 51 Copynumber: 1.9 Consensus size: 51
7343890 CTTATAACAT
*** * *
7343900 ATTTTAACCTACAATATAATGTGTAAATCTTAATTTGATACAATTATATGC
1 ATTTTAACCTACAATATAACACGTAAATATTAATTTAATACAATTATATGC
* * *
7343951 ATTTTAACCTATAATATAACACGTGAATATTAATTTAATGCAATTA
1 ATTTTAACCTACAATATAACACGTAAATATTAATTTAATACAATTA
7343997 AACATTTAAC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 38 1.00
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.40
Consensus pattern (51 bp):
ATTTTAACCTACAATATAACACGTAAATATTAATTTAATACAATTATATGC
Found at i:7344866 original size:31 final size:31
Alignment explanation
Indices: 7344820--7344878 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
7344810 TTAATAACTT
* *
7344820 TTTTTGTACAATCTTTTACAATTTTTAATGA
1 TTTTTATACAATCTTTTACAAATTTTAATGA
* *
7344851 TTTTTATACATTCTTTTATAAATTTTAA
1 TTTTTATACAATCTTTTACAAATTTTAA
7344879 CAAAATTTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.58
Consensus pattern (31 bp):
TTTTTATACAATCTTTTACAAATTTTAATGA
Found at i:7350138 original size:3 final size:3
Alignment explanation
Indices: 7350132--7350161 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7350122 TTGCTACTAC
7350132 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7350162 GACCAGCATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7351707 original size:6 final size:6
Alignment explanation
Indices: 7351693--7351728 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
7351683 TTTTATTTTG
* *
7351693 GCTGCT GCTGTT GCTGTT ACTGTT GCTGTT GCTGTT
1 GCTGTT GCTGTT GCTGTT GCTGTT GCTGTT GCTGTT
7351729 CTTATTCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.03, C:0.19, G:0.31, T:0.47
Consensus pattern (6 bp):
GCTGTT
Found at i:7368626 original size:3 final size:3
Alignment explanation
Indices: 7368612--7368662 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
7368602 ACACTAGCAC
* * * * *
7368612 ATA ATT ATA ATA ATA GTA ATA CTA ATA ATA CTA ATA ATA TTA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7368659 ATA A
1 ATA A
7368663 GGGTATTTGA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:7370325 original size:93 final size:95
Alignment explanation
Indices: 7370142--7370417 Score: 452
Period size: 93 Copynumber: 2.9 Consensus size: 95
7370132 TCTCTGATCT
* *
7370142 ATTCCACTGTCAAACGCA-GGAGATAGAGTTATCAGCTTCAATGTACTCCACTGTAGTCACAGGG
1 ATTCCACTGTCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGT--CAGGG
7370206 AGGTAAAATCTGCCATCTTTGATCTTCAATCC
64 AGGTAAAATCTGCCATCTTTGATCTTCAATCC
7370238 ATTCCAC-GTCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGT-CTCCACTGTAGTCAGGGAG
1 ATTCCACTGTCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAG
*
7370301 GTAAAATCTGCCATCTTTGATCTTCAATCT
66 GTAAAATCTGCCATCTTTGATCTTCAATCC
* *
7370331 ATTCC-CTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAG
1 ATTCCACTGTCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAG
*
7370395 GTAAAATCTGCCATCTTCGATCT
66 GTAAAATCTGCCATCTTTGATCT
7370418 GCTTCGCTGT
Statistics
Matches: 171, Mismatches: 6, Indels: 8
0.92 0.03 0.04
Matches are distributed among these distances:
92 1 0.01
93 76 0.44
94 41 0.24
95 21 0.12
96 32 0.19
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (95 bp):
ATTCCACTGTCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAG
GTAAAATCTGCCATCTTTGATCTTCAATCC
Found at i:7370502 original size:44 final size:43
Alignment explanation
Indices: 7370435--7371156 Score: 689
Period size: 44 Copynumber: 16.7 Consensus size: 43
7370425 TGTCAACTAC
* * * * *
7370435 AGGAAGGCAAGATCTACAATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CACCAATAT
* * * *
7370479 ATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTT--CCACCAATAT
* * * *
7370524 GGGAAGACAAGATCTGC-ATCGTCGATCCACTTCCTACCGATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATAT
* * * *
7370567 AGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CACCAATAT
* *
7370611 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACC-ATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTT--CCACCAATAT
* *
7370655 GGGAAGACAAGATCTGC-ATC-TCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATAT
* * *
7370697 AGGAAGA-AGGA-CTGCTATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CACCAATAT
* * *
7370739 ATGAAGACAAGATCTGCTTTCTGCGATCTACTTGCCACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTT-CCACCAATAT
* *
7370783 GGGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATAT
* * * * *
7370826 AGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CACCAATAT
* *
7370870 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTT--CCACCAATAT
* *
7370915 GGGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATAT
* * * * *
7370958 AGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CACCAATAT
* * *
7371002 ATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTT--CCACCAATAT
* *
7371047 GGGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATAT
* * *
7371090 AGGAAGA-TAGATCTGCTA-CTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CACCAATAT
* *
7371132 ATG-AGAC-AGATCTGCTTTC-TCGATC
1 AGGAAGACAAGATCTGCTATCTTCGATC
7371157 ATCCACTTAC
Statistics
Matches: 552, Mismatches: 96, Indels: 63
0.78 0.14 0.09
Matches are distributed among these distances:
40 6 0.01
41 27 0.05
42 81 0.15
43 98 0.18
44 265 0.48
45 71 0.13
46 4 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (43 bp):
AGGAAGACAAGATCTGCTATCTTCGATCTACTTCCACCAATAT
Found at i:7370572 original size:132 final size:131
Alignment explanation
Indices: 7370443--7371156 Score: 1201
Period size: 132 Copynumber: 5.5 Consensus size: 131
7370433 ACAGGAAGGC
* * *
7370443 AAGATCTACAATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCT
1 AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
* * *
7370508 ACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCGATATAGGAAG
66 ACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
7370573 A
131 A
* *
7370574 CAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATC
1 -AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATC
7370639 TACTTCGCCACC-ATATGGGAAGACAAGATCTGCATC-TCGATCCACTTCCTACCAATATAGGAA
65 TACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAA
7370702 GA
130 GA
* *
7370704 AGGA-CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCT
1 AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
7370768 ACTT-GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
66 ACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
7370832 A
131 A
* *
7370833 TAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATC
1 -AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATC
7370898 TACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAA
65 TACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAA
7370963 GA
130 GA
* * *
7370965 TAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATC
1 -AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATC
7371030 TACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAA
65 TACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAA
7371095 GA
130 GA
*
7371097 TAGATCTGCTA-CTTCGATCTACTTCACGCCAATACATG-AGAC-AGATCTGCTTTC-TCGATC
1 AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATC
7371157 ATCCACTTAC
Statistics
Matches: 563, Mismatches: 14, Indels: 15
0.95 0.02 0.03
Matches are distributed among these distances:
127 11 0.02
128 99 0.18
129 37 0.07
130 59 0.10
131 94 0.17
132 263 0.47
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (131 bp):
AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
ACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
A
Found at i:7390941 original size:12 final size:12
Alignment explanation
Indices: 7390924--7390949 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7390914 CGGTAATTTG
7390924 TCCAATTGATTC
1 TCCAATTGATTC
7390936 TCCAATTGATTC
1 TCCAATTGATTC
7390948 TC
1 TC
7390950 TCCTAATTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.08, T:0.42
Consensus pattern (12 bp):
TCCAATTGATTC
Found at i:7395417 original size:3 final size:3
Alignment explanation
Indices: 7395409--7395441 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
7395399 GTAAATAGAT
7395409 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7395442 GAGTTGTGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7399182 original size:19 final size:20
Alignment explanation
Indices: 7399140--7399190 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
7399130 AAAATAACTA
* *
7399140 AAATAAGAAAT-TTAAGAAT
1 AAATAATAAATATTAAAAAT
7399159 AAATAATAAATATTAAAAAT
1 AAATAATAAATATTAAAAAT
7399179 -AATAACTAAATA
1 AAATAA-TAAATA
7399191 AAGAAACGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (20 bp):
AAATAATAAATATTAAAAAT
Found at i:7400510 original size:18 final size:17
Alignment explanation
Indices: 7400489--7400524 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
7400479 TTATTACTAT
*
7400489 TATTATTTTCTTTATATA
1 TATTATTTTATTT-TATA
7400507 TATTATTTTATTTTATA
1 TATTATTTTATTTTATA
7400524 T
1 T
7400525 TTTTCTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (17 bp):
TATTATTTTATTTTATA
Found at i:7404073 original size:7 final size:7
Alignment explanation
Indices: 7404070--7404145 Score: 84
Period size: 7 Copynumber: 10.9 Consensus size: 7
7404060 AAAAAAAGAA
7404070 AAAAAAG
1 AAAAAAG
7404077 AAAAAAG
1 AAAAAAG
*
7404084 AAACAA-
1 AAAAAAG
*
7404090 AAAGAA-
1 AAAAAAG
7404096 AAAAAAG
1 AAAAAAG
7404103 AAAAAAG
1 AAAAAAG
7404110 AAAAAAG
1 AAAAAAG
*
7404117 GAAAAAG
1 AAAAAAG
*
7404124 AAAGAAG
1 AAAAAAG
7404131 AAGAAGAAG
1 AA-AA-AAG
7404140 AAAAAA
1 AAAAAA
7404146 AGGAGAGGCC
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
6 10 0.17
7 41 0.69
8 3 0.05
9 5 0.08
ACGTcount: A:0.82, C:0.01, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:7404073 original size:9 final size:9
Alignment explanation
Indices: 7404059--7404146 Score: 87
Period size: 9 Copynumber: 9.8 Consensus size: 9
7404049 CACTTTTTTT
7404059 AAAAAAAAG
1 AAAAAAAAG
7404068 AAAAAAAAG
1 AAAAAAAAG
7404077 --AAAAAAG
1 AAAAAAAAG
7404084 AAACAAAAAG
1 AAA-AAAAAG
7404094 AAAAAAAAG
1 AAAAAAAAG
7404103 --AAAAAAG
1 AAAAAAAAG
*
7404110 -AAAAAAGG
1 AAAAAAAAG
7404118 AAAAAGAAAG
1 AAAAA-AAAG
7404128 AAGAAGAAGAAG
1 AA-AA-AA-AAG
7404140 AAAAAAA
1 AAAAAAA
7404147 GGAGAGGCCA
Statistics
Matches: 68, Mismatches: 2, Indels: 18
0.77 0.02 0.20
Matches are distributed among these distances:
7 14 0.21
8 6 0.09
9 21 0.31
10 16 0.24
11 5 0.07
12 6 0.09
ACGTcount: A:0.83, C:0.01, G:0.16, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Done.