Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 28 of 230
Found at i:7660952 original size:19 final size:20
Alignment explanation
Indices: 7660914--7660958 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7660904 TAATTACTAT
*
7660914 AAAAATTTATTAACACAATA
1 AAAAATTTATAAACACAATA
*
7660934 AAAAATTTCTAAACA-AATA
1 AAAAATTTATAAACACAATA
7660953 ACAAAA
1 A-AAAA
7660959 AATCGTATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAATTTATAAACACAATA
Found at i:7662038 original size:19 final size:21
Alignment explanation
Indices: 7661994--7662038 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
7661984 AAATTTATAA
*
7661994 AATATACATAAATTAGTTTTAT
1 AATATACATAAATTA-TTTTAC
7662016 AATATA-ATAAATT-TTTTAC
1 AATATACATAAATTATTTTAC
7662035 AATA
1 AATA
7662039 ACCATCCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 9 0.41
21 7 0.32
22 6 0.27
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (21 bp):
AATATACATAAATTATTTTAC
Found at i:7663870 original size:18 final size:18
Alignment explanation
Indices: 7663833--7663875 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7663823 GAATAGGTTT
7663833 TTAATTAAATAAATTTAA
1 TTAATTAAATAAATTTAA
* *
7663851 TTGATTAAA-AATTTTAAA
1 TTAATTAAATAAATTT-AA
7663869 TTAATTA
1 TTAATTA
7663876 CATATTGAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TTAATTAAATAAATTTAA
Found at i:7666996 original size:17 final size:17
Alignment explanation
Indices: 7666963--7666997 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7666953 TCCTCTATGT
* *
7666963 TAGAATAAATATTAAAA
1 TAGAATAAAAATCAAAA
7666980 TAGAATAAAAATCAAAA
1 TAGAATAAAAATCAAAA
7666997 T
1 T
7666998 CAAATAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.26
Consensus pattern (17 bp):
TAGAATAAAAATCAAAA
Found at i:7672837 original size:14 final size:14
Alignment explanation
Indices: 7672800--7672830 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7672790 TCTATTATTT
*
7672800 AATAATTTTTTTAA
1 AATAATTTTTTAAA
7672814 AATAATTTTTTAAA
1 AATAATTTTTTAAA
7672828 AAT
1 AAT
7672831 TGTTTTTAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
AATAATTTTTTAAA
Found at i:7676093 original size:16 final size:16
Alignment explanation
Indices: 7676072--7676139 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
7676062 TTTGGTTCGC
7676072 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
7676088 TGTATTGGATTAGATG
1 TGTATTGGATTAGAGG
7676104 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
7676120 TGTATTGGATTAGAGT
1 TGTATTGGATTAGAGG
7676136 TGTA
1 TGTA
7676140 ATAGCTAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.25, C:0.00, G:0.34, T:0.41
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:7676402 original size:18 final size:18
Alignment explanation
Indices: 7676363--7676409 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 18
7676353 ATTTAAACAC
7676363 AATTATAATT-AAATATAT
1 AATT-TAATTAAAATATAT
7676381 --TTTAATTAAAATATAT
1 AATTTAATTAAAATATAT
7676397 AATTTAA-TAAAAT
1 AATTTAATTAAAAT
7676410 TCTTATAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 5 0.19
16 10 0.38
17 6 0.23
18 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AATTTAATTAAAATATAT
Found at i:7676528 original size:67 final size:67
Alignment explanation
Indices: 7676457--7676669 Score: 159
Period size: 67 Copynumber: 3.1 Consensus size: 67
7676447 ATTGTTAATG
*
7676457 TTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAAT
7676522 TA
66 TA
* * * * * * ***
7676524 TTATTAAATATATTTTAATTAAAATATATAATT-T-AATAA-AATTCTTATAAT--TAGCAGAAA
1 TTATT---TAAATTTTAA-TAAGAT-TATTATTATCAATAATAAATATTTTAATCATA-TTTAAA
** * *
7676584 TTTGTTATTG
60 --CATAATTA
* * *
7676594 TTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCGTATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAAT
7676659 TA
66 TA
7676661 TTA-TTAAAT
1 TTATTTAAAT
7676670 ACATTATAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 27
0.65 0.18 0.17
Matches are distributed among these distances:
65 5 0.05
66 12 0.12
67 28 0.27
68 11 0.11
69 12 0.12
70 24 0.23
71 6 0.06
72 6 0.06
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (67 bp):
TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAAT
TA
Found at i:7676546 original size:156 final size:156
Alignment explanation
Indices: 7676262--7676583 Score: 599
Period size: 156 Copynumber: 2.1 Consensus size: 156
7676252 TAGAATACCC
* * *
7676262 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
7676327 TTATCAGTAATAAATATTTTAATCATATTTAAACACAATTATAATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACACAATTATAATTAAATATATTTTAATTAAAA
7676392 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
7676418 TTAGCAGAAAATTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
* *
7676483 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACACAATTATAATTAAATATATTTTAATTAAAA
7676548 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
7676574 TTAGCAGAAA
1 TTAGCAGAAA
7676584 TTTGTTATTG
Statistics
Matches: 161, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
156 161 1.00
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (156 bp):
TTAGCAGAAAATTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
TTATCAGTAATAAATATTTTAATCATATTTAAACACAATTATAATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTATAA
Found at i:7676552 original size:18 final size:17
Alignment explanation
Indices: 7676531--7676565 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7676521 TTATTATTAA
*
7676531 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7676549 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7676566 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7676590 original size:137 final size:138
Alignment explanation
Indices: 7676448--7676713 Score: 426
Period size: 137 Copynumber: 1.9 Consensus size: 138
7676438 TAAATGATTA
* * *
7676448 TTGTTAATGTTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
* *
7676513 AAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTT-ATAATTA
66 AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
7676577 GCAGAAAT
131 GCAGAAAT
* *
7676585 TTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCGTATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
****
7676650 AAACATAATTATTATTAAATACATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT
66 AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
7676714 CATATTCTTA
Statistics
Matches: 117, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
137 111 0.95
138 6 0.05
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (138 bp):
TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
GCAGAAAT
Found at i:7676747 original size:137 final size:135
Alignment explanation
Indices: 7676469--7676747 Score: 330
Period size: 137 Copynumber: 2.0 Consensus size: 135
7676459 ATTTAAATTT
* * *
7676469 TAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATA
1 TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
* * * *
7676534 TATTTTAATTAAAATATATAATTTAATAAAATTCTTATAATTAGCAGAAATTTGTTATTGTTATT
66 CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTA-CA-AAATTTCTTATTGTTACT
* **
7676599 TAAATTT
129 CAAATCA
*
7676606 TAATAAGATTATTAATATCAATAATAAATAATTTAATCGTATTTAAACATAATTATTATTAAATA
1 TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
**** *
7676671 CATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT-C-ATA-TTCTTATATGAATTT
66 CATTATAATTAAAATATATAATTTAATAAAATTCTT-ATAATTACAAAATTTCTTAT-TG---TT
7676733 ACTCAAATCA
126 ACTCAAATCA
7676743 TAATA
1 TAATA
7676748 TATGATACTA
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
133 6 0.05
134 4 0.03
136 1 0.01
137 104 0.86
138 6 0.05
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (135 bp):
TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTACAAAATTTCTTATTGTTACTCA
AATCA
Found at i:7680015 original size:20 final size:20
Alignment explanation
Indices: 7679976--7680020 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7679966 AGTGGGTGAA
* **
7679976 CGGTGATGTGACCATGGCGG
1 CGGTGATGTGACAACAGCGG
*
7679996 TGGTGATGTGACAACAGCGG
1 CGGTGATGTGACAACAGCGG
7680016 CGGTG
1 CGGTG
7680021 GCAGGGAGCC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.18, C:0.18, G:0.44, T:0.20
Consensus pattern (20 bp):
CGGTGATGTGACAACAGCGG
Found at i:7680935 original size:10 final size:10
Alignment explanation
Indices: 7680891--7680937 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
7680881 TTATAATTCA
7680891 ACAAAGTTTC
1 ACAAAGTTTC
*
7680901 ATAAAGTTTC
1 ACAAAGTTTC
* *
7680911 ATAAAG-ATC
1 ACAAAGTTTC
7680920 ACCAAAGTTTC
1 A-CAAAGTTTC
7680931 ACAAAGT
1 ACAAAGT
7680938 AGATACATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 3 0.10
10 25 0.81
11 3 0.10
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.28
Consensus pattern (10 bp):
ACAAAGTTTC
Found at i:7682614 original size:33 final size:33
Alignment explanation
Indices: 7682575--7682684 Score: 136
Period size: 33 Copynumber: 3.3 Consensus size: 33
7682565 ATTATAAAGC
7682575 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
7682608 ATGTATAATTGACCTAAAATTACTTGTTGGTTT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
7682641 AATGT-T-ATTGTCCCTAAAA-AACATTGTTGGTGT
1 -ATGTATAATTG-ACCTAAAATTA-ATTGTTGGTGT
7682674 ATGTATAATTG
1 ATGTATAATTG
7682685 TTGGTTTAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
32 9 0.14
33 49 0.74
34 8 0.12
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:7682732 original size:50 final size:51
Alignment explanation
Indices: 7682631--7682783 Score: 283
Period size: 50 Copynumber: 3.0 Consensus size: 51
7682621 CTAAAATTAC
7682631 TTGTTGGTTTAATGTTATTGT-CCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATT-TACCCTAAAAAACATTGTTGGTGTATGTATAA
7682682 TTGTTGGTTTAATGTTATTTACCCT-AAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
7682732 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
7682783 T
1 T
7682784 CTTTTAATTT
Statistics
Matches: 100, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
50 51 0.51
51 49 0.49
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (51 bp):
TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
Found at i:7688632 original size:18 final size:20
Alignment explanation
Indices: 7688592--7688629 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
7688582 AATTAGATTC
* *
7688592 TATCTATTTTTTTTGTTTAA
1 TATCTATTTTTATGGTTTAA
7688612 TATC-ATTTTTATGGTTTA
1 TATCTATTTTTATGGTTTA
7688630 TATTTGCAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.21, C:0.05, G:0.08, T:0.66
Consensus pattern (20 bp):
TATCTATTTTTATGGTTTAA
Found at i:7693688 original size:17 final size:18
Alignment explanation
Indices: 7693650--7693693 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
7693640 TATTTTCAAG
*
7693650 AAAATATAATAATAAATTA
1 AAAATAT-ATAATAAATAA
7693669 AAAATATATAA-AAATAA
1 AAAATATATAATAAATAA
7693686 AAAATATA
1 AAAATATA
7693694 GTTGGCAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 13 0.54
18 4 0.17
19 7 0.29
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAATATATAATAAATAA
Found at i:7693795 original size:25 final size:24
Alignment explanation
Indices: 7693767--7693815 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
7693757 ATTTAAATTT
*
7693767 TATATTAATATTAAATAAATATAAA
1 TATATTAATACTAAATAAA-ATAAA
7693792 TATATTAATACTAAATAAAATAAA
1 TATATTAATACTAAATAAAATAAA
7693816 AATCCCCCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
TATATTAATACTAAATAAAATAAA
Found at i:7693796 original size:19 final size:20
Alignment explanation
Indices: 7693774--7693813 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
7693764 TTTTATATTA
7693774 ATATTAA-A-TAAATATAAAT
1 ATATTAATACTAAATA-AAAT
7693793 ATATTAATACTAAATAAAAT
1 ATATTAATACTAAATAAAAT
7693813 A
1 A
7693814 AAAATCCCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 6 0.32
21 6 0.32
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (20 bp):
ATATTAATACTAAATAAAAT
Found at i:7694156 original size:10 final size:10
Alignment explanation
Indices: 7694141--7694183 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
7694131 TTTGAAATAT
7694141 TTTAATATAA
1 TTTAATATAA
7694151 TTTAATATTTAA
1 TTTAATA--TAA
*
7694163 TATTAATTTAA
1 T-TTAATATAA
7694174 TTTAATATAA
1 TTTAATATAA
7694184 AACATTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
10 15 0.54
11 4 0.14
12 4 0.14
13 5 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
TTTAATATAA
Found at i:7694159 original size:18 final size:18
Alignment explanation
Indices: 7694136--7694174 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7694126 AAATATTTGA
7694136 AATATTTTAATA-TAATTT
1 AATA-TTTAATATTAATTT
7694154 AATATTTAATATTAATTT
1 AATATTTAATATTAATTT
7694172 AAT
1 AAT
7694175 TTAATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AATATTTAATATTAATTT
Found at i:7694305 original size:29 final size:29
Alignment explanation
Indices: 7694273--7694358 Score: 83
Period size: 29 Copynumber: 3.1 Consensus size: 29
7694263 TAAATTATAT
7694273 ATTATTTTATTAAATTATATTTAATAACA
1 ATTATTTTATTAAATTATATTTAATAACA
* **
7694302 ATTA---TATTAAAATATGA-TTAA-AGTA
1 ATTATTTTATTAAATTAT-ATTTAATAACA
*
7694327 TTTATTATTATTAAATTATATTTAATAACA
1 ATTATT-TTATTAAATTATATTTAATAACA
7694357 AT
1 AT
7694359 CCTATTAAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 13
0.67 0.13 0.21
Matches are distributed among these distances:
25 5 0.12
26 14 0.33
27 1 0.02
28 1 0.02
29 18 0.43
30 3 0.07
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (29 bp):
ATTATTTTATTAAATTATATTTAATAACA
Found at i:7694310 original size:26 final size:26
Alignment explanation
Indices: 7694280--7694369 Score: 90
Period size: 26 Copynumber: 3.3 Consensus size: 26
7694270 TATATTATTT
7694280 TATTAAATTATATTTAATAACAATTA
1 TATTAAATTATATTTAATAACAATTA
* * ***
7694306 TATTAAAATATGATTAAAGTATTTATTA
1 TATTAAATTAT-ATTTAA-TAACAATTA
**
7694334 TTATTAAATTATATTTAATAACAATCC
1 -TATTAAATTATATTTAATAACAATTA
7694361 TATTAAATT
1 TATTAAATT
7694370 TTAATAACAA
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
26 19 0.39
27 9 0.18
28 11 0.22
29 10 0.20
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (26 bp):
TATTAAATTATATTTAATAACAATTA
Found at i:7694355 original size:55 final size:56
Alignment explanation
Indices: 7694243--7694367 Score: 171
Period size: 55 Copynumber: 2.2 Consensus size: 56
7694233 AATATAAAAT
* * *
7694243 AATTATATTAAGAATGTTATTAAATTATATATTATTTTATTAAATTATATTTAATAAC
1 AATTATATTAA-AATATGATTAAAGTATATATTA-TTTATTAAATTATATTTAATAAC
*
7694301 AATTATATTAAAATATGATTAAAGTATTTATTA-TTATTAAATTATATTTAATAAC
1 AATTATATTAAAATATGATTAAAGTATATATTATTTATTAAATTATATTTAATAAC
**
7694356 AATCCTATTAAA
1 AATTATATTAAA
7694368 TTTTAATAAC
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
55 32 0.52
57 18 0.30
58 11 0.18
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (56 bp):
AATTATATTAAAATATGATTAAAGTATATATTATTTATTAAATTATATTTAATAAC
Found at i:7694946 original size:22 final size:22
Alignment explanation
Indices: 7694915--7694965 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
7694905 TAAACCTTTT
* *
7694915 TTTTGTTGTTGCTTTACTGTCA
1 TTTTGCTGTTGCTTTACTATCA
** *
7694937 TTTTGCTGTTTTTTTTCTATCA
1 TTTTGCTGTTGCTTTACTATCA
7694959 TTTTGCT
1 TTTTGCT
7694966 ATTATATTGC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.08, C:0.14, G:0.14, T:0.65
Consensus pattern (22 bp):
TTTTGCTGTTGCTTTACTATCA
Found at i:7698341 original size:21 final size:21
Alignment explanation
Indices: 7698317--7698366 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
7698307 TTTACCTAAG
*
7698317 ATATAAATTGAATTGAATTGA
1 ATATAAATTGAATTAAATTGA
* *
7698338 ATATGAATTGTATTAAATTGA
1 ATATAAATTGAATTAAATTGA
*
7698359 GT-TAAATT
1 ATATAAATT
7698367 TACTTGTATA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (21 bp):
ATATAAATTGAATTAAATTGA
Found at i:7700535 original size:21 final size:18
Alignment explanation
Indices: 7700507--7700563 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
7700497 CTTTACACCA
7700507 CATTGTGGATAAACCACT
1 CATTGTGGATAAACCACT
**
7700525 CATCGTTGTGGACGAACCACT
1 CA---TTGTGGATAAACCACT
7700546 CATTGTGGATAAACCACT
1 CATTGTGGATAAACCACT
7700564 AGTAATAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
18 16 0.50
21 16 0.50
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (18 bp):
CATTGTGGATAAACCACT
Found at i:7700749 original size:22 final size:22
Alignment explanation
Indices: 7700723--7700796 Score: 78
Period size: 24 Copynumber: 3.3 Consensus size: 22
7700713 ATTATAGTGT
* *
7700723 AGATAAACCACTCAAACAGTAC
1 AGATAAACCACTCAAACGGTGC
* *
7700745 AGATAAAATCTACTCAAACGGTGT
1 AGAT-AAA-CCACTCAAACGGTGC
*
7700769 GGATAAACCACTC-AACGGTGC
1 AGATAAACCACTCAAACGGTGC
7700790 AGATAAA
1 AGATAAA
7700797 TTGTTCAACT
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
21 13 0.31
22 9 0.21
23 6 0.14
24 14 0.33
ACGTcount: A:0.45, C:0.22, G:0.16, T:0.18
Consensus pattern (22 bp):
AGATAAACCACTCAAACGGTGC
Found at i:7703332 original size:13 final size:13
Alignment explanation
Indices: 7703314--7703339 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7703304 TCCATTCAAC
7703314 TTTGACCTTATAA
1 TTTGACCTTATAA
7703327 TTTGACCTTATAA
1 TTTGACCTTATAA
7703340 GCTGAGGTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (13 bp):
TTTGACCTTATAA
Found at i:7706331 original size:109 final size:107
Alignment explanation
Indices: 7706136--7706476 Score: 461
Period size: 109 Copynumber: 3.1 Consensus size: 107
7706126 TGGATTAAGA
* * * *
7706136 TTTAAGAGGATATTTGGCTATTTGGTCCAAG-GAGAAATCGAAACCCAGCACATTAGGGCACGTT
1 TTTAAAAGGATATTTGGCTATTTGGTCGAAGAGAAAAATCGAAACCCAGCGCATTAGGGCACGTT
** * *
7706200 TTCTCGAATTTTCGAACGCAAAACATTGCCTTATTTTGAAAT
66 TTCTCGAATTCCCAAACGCAAAACATTGCCTTACTTTGAAAT
*
7706242 TTCTAAAAGGATATTTGGCTATTTGGTCGAATGAGAAAAATCGAAACCCAGCGCATTAGGGCAGG
1 TT-TAAAAGGATATTTGGCTATTTGGTCGAA-GAGAAAAATCGAAACCCAGCGCATTAGGGCACG
*
7706307 TTTTCTCAAATTCCCAAACGCAAAACATTGCCTTACTTTGAAAAT
64 TTTTCTCGAATTCCCAAACGCAAAACATTGCCTTACTTTG-AAAT
**
7706352 TTTAAAATTATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCGCATTAGGGCACGT
1 TTTAAAAGGATATTTGGCTATTTGGTCGAA-GAGAAAAATCGAAACCCAGCGCATTAGGGCACGT
* * *
7706417 TTTCTCGAA-TCTCTAAACGCAAAACATTGTCTTACTTTGAATTTTT
65 TTTCTCGAATTC-CCAAACGCAAAACATTGCCTTACTTTGAA---AT
7706463 TTTAAAAGGATATT
1 TTTAAAAGGATATT
7706477 AATATGCATA
Statistics
Matches: 207, Mismatches: 20, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
106 2 0.01
107 26 0.13
108 5 0.02
109 155 0.75
110 6 0.03
111 13 0.06
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Consensus pattern (107 bp):
TTTAAAAGGATATTTGGCTATTTGGTCGAAGAGAAAAATCGAAACCCAGCGCATTAGGGCACGTT
TTCTCGAATTCCCAAACGCAAAACATTGCCTTACTTTGAAAT
Found at i:7707778 original size:12 final size:12
Alignment explanation
Indices: 7707761--7707811 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
7707751 TATATATATT
7707761 AAAATAAAAAGA
1 AAAATAAAAAGA
*
7707773 AAAATAAATAGA
1 AAAATAAAAAGA
* *
7707785 GTAAA-AAGAAGTA
1 -AAAATAAAAAG-A
7707798 AAAATAAAAAGA
1 AAAATAAAAAGA
7707810 AA
1 AA
7707812 CCCTTAGATC
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
12 21 0.70
13 9 0.30
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (12 bp):
AAAATAAAAAGA
Found at i:7708610 original size:88 final size:88
Alignment explanation
Indices: 7708485--7708742 Score: 338
Period size: 88 Copynumber: 2.9 Consensus size: 88
7708475 GATTTGTGGT
* * * * * * ** *
7708485 TTAAATTTACTTCACTACTACCTTGGGAAGATAAGATTCACCGTCTTTGATCCCCTCCAGTACTG
1 TTAAATATACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
*
7708550 CTTAGGGAGACAGGA-CTAATGGC
66 CTTAGGGAGACAGAATC-AATGGC
* * * *
7708573 TTAAATATATTTTTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCATTACTA
1 TTAAATATACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
*
7708638 CTTAGGGAGATAGAATCAATGGC
66 CTTAGGGAGACAGAATCAATGGC
* *
7708661 TTAAATATGCTTCTGCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
1 TTAAATATACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
*
7708726 CTTAGGGAGATAGAATC
66 CTTAGGGAGACAGAATC
7708743 TGCAATCTTC
Statistics
Matches: 149, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
88 148 0.99
89 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (88 bp):
TTAAATATACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
CTTAGGGAGACAGAATCAATGGC
Found at i:7708751 original size:44 final size:44
Alignment explanation
Indices: 7708703--7708914 Score: 143
Period size: 44 Copynumber: 4.8 Consensus size: 44
7708693 AAGATTCACC
* *
7708703 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAGAATCTGCA
* * *
7708747 ATCTTCAACCTACTTCACTACCGCTTAGGGAGATA-AGA-CT--A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAGA-ATCTGCA
* * * * *
7708788 ATGGCTTAAATATGCTTCTCCACTA-T-CTT-GGGAAGATAAGATTC-ACC
1 AT--CTT-CA-AT-CTACTCCACTACTGCTTAGGG-AGAT-AGAATCTGCA
* * * * *
7708835 ATCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATTTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAGAATCTGCA
* *
7708879 ATCTTCAACCTACTTCACTACTGCTTAGGGAGATAG
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAG
7708915 GACTAGTGGC
Statistics
Matches: 126, Mismatches: 26, Indels: 32
0.68 0.14 0.17
Matches are distributed among these distances:
41 3 0.02
42 10 0.08
43 16 0.13
44 76 0.60
45 8 0.06
46 11 0.09
47 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAGAATCTGCA
Found at i:7708838 original size:132 final size:132
Alignment explanation
Indices: 7708638--7708926 Score: 490
Period size: 132 Copynumber: 2.2 Consensus size: 132
7708628 TCCATTACTA
* *
7708638 CTTAGGGAGAT-AGAATCAATGGCTTAAATATGCTTCTGCACTATCTTGGGAAGATAAGATTCAC
1 CTTAGGGAGATAAGACT-AATGGCTTAAATATGCTTCTCCACTATCTTGGGAAGATAAGATTCAC
* *
7708702 CATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGAATCTGCAATCTTCAACCTACTTCACTA
65 CATCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTACTTCACTA
7708767 CCG
130 CCG
7708770 CTTAGGGAGATAAGACTAATGGCTTAAATATGCTTCTCCACTATCTTGGGAAGATAAGATTCACC
1 CTTAGGGAGATAAGACTAATGGCTTAAATATGCTTCTCCACTATCTTGGGAAGATAAGATTCACC
*
7708835 ATCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATTTGCAATCTTCAACCTACTTCACTAC
66 ATCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTACTTCACTAC
*
7708900 TG
131 CG
* *
7708902 CTTAGGGAGATAGGACTAGTGGCTT
1 CTTAGGGAGATAAGACTAATGGCTT
7708927 CCCCGATCTA
Statistics
Matches: 148, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
132 144 0.97
133 4 0.03
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (132 bp):
CTTAGGGAGATAAGACTAATGGCTTAAATATGCTTCTCCACTATCTTGGGAAGATAAGATTCACC
ATCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTACTTCACTAC
CG
Found at i:7718465 original size:43 final size:43
Alignment explanation
Indices: 7718404--7718491 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
7718394 GTTCTTCTCT
7718404 TGGCCTAAGGATGTTATCATTAATCCTTTTACTCTGCCACCCA
1 TGGCCTAAGGATGTTATCATTAATCCTTTTACTCTGCCACCCA
7718447 TGGCCTAAGGATGTTATCATTAATCCTTTTACTCTGCCACCCA
1 TGGCCTAAGGATGTTATCATTAATCCTTTTACTCTGCCACCCA
7718490 TG
1 TG
7718492 ATATTTGGGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (43 bp):
TGGCCTAAGGATGTTATCATTAATCCTTTTACTCTGCCACCCA
Found at i:7719697 original size:16 final size:16
Alignment explanation
Indices: 7719676--7719710 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7719666 TTTTATAATG
**
7719676 AAATGCCATGTAGTCA
1 AAATGCCATCCAGTCA
7719692 AAATGCCATCCAGTCA
1 AAATGCCATCCAGTCA
7719708 AAA
1 AAA
7719711 CAAAACAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.23, G:0.14, T:0.20
Consensus pattern (16 bp):
AAATGCCATCCAGTCA
Found at i:7720956 original size:109 final size:109
Alignment explanation
Indices: 7720653--7720986 Score: 506
Period size: 109 Copynumber: 3.1 Consensus size: 109
7720643 GATTTAAGAG
* * *
7720653 GATATTTGGCTATTTGGTCGAACGAAAAAAATCGAAACTCAGCACATTAGGGCACGTTTTCTCGA
1 GATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCGCATTAGGGCACGTTTTCTCGA
* * *
7720718 ATTTCCAAACGCAAAACATTACCTTATTTTGAAAGTTTTAAAAA
66 ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTTTTAAAAA
* *
7720762 GATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAGCGCATTAGGGCACGTTTTCTTGA
1 GATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCGCATTAGGGCACGTTTTCTCGA
* * * * *
7720827 ATTTTCAAACGCAAAACATTGCCTCACCTTGAACTTTTTAAAAT
66 ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTTTTAAAAA
7720871 GATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCGCATTAGGGCACGTTTTCTCGA
1 GATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCGCATTAGGGCACGTTTTCTCGA
* * * *
7720936 ATCTCCAAACGCAAAACATTGTCTTACTTTGAATTTTTTTAAAAG
66 ATTTCCAAACGCAAAACATTGCCTTACTTTGAA-ATTTTTAAAAA
7720981 GATATT
1 GATATT
7720987 AATATGCATA
Statistics
Matches: 202, Mismatches: 22, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
109 187 0.93
110 15 0.07
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (109 bp):
GATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCGCATTAGGGCACGTTTTCTCGA
ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTTTTAAAAA
Found at i:7721227 original size:14 final size:14
Alignment explanation
Indices: 7721210--7721240 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7721200 AAGTAAAAGT
*
7721210 AAAAATAAAACTAA
1 AAAAATAAAAATAA
7721224 AAAAATAAAAATAA
1 AAAAATAAAAATAA
7721238 AAA
1 AAA
7721241 TCTATGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (14 bp):
AAAAATAAAAATAA
Found at i:7728410 original size:45 final size:45
Alignment explanation
Indices: 7728359--7728451 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
7728349 AGTAAAAGAT
7728359 ACACAAATAACCAACCAAAGGCACACCCAAATGTTCGACACAACA
1 ACACAAATAACCAACCAAAGGCACACCCAAATGTTCGACACAACA
7728404 ACACAAATAACCAACCAAAGGCACACCCAAATGTTCGACACAACA
1 ACACAAATAACCAACCAAAGGCACACCCAAATGTTCGACACAACA
7728449 ACA
1 ACA
7728452 TATTTATAGG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.49, C:0.33, G:0.09, T:0.09
Consensus pattern (45 bp):
ACACAAATAACCAACCAAAGGCACACCCAAATGTTCGACACAACA
Found at i:7730067 original size:18 final size:17
Alignment explanation
Indices: 7730046--7730080 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7730036 TTATTATTAA
*
7730046 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7730064 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7730081 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7730217 original size:156 final size:157
Alignment explanation
Indices: 7729933--7730248 Score: 571
Period size: 156 Copynumber: 2.0 Consensus size: 157
7729923 TAGAACACCC
*
7729933 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
1 TTAGCAAAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
* *
7729998 TTATCAATAATAAATAATTTAATAATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATAATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
7730063 TATATAATTTAATAAAATTCTT-ATAA
131 TATATAATTTAATAAAATTCTTAATAA
* *
7730089 TTAGCAAAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAAAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
*
7730154 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATAATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
7730219 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
7730246 TTA
1 TTA
7730249 ATATTCTTAT
Statistics
Matches: 153, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
156 146 0.95
157 7 0.05
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.47
Consensus pattern (157 bp):
TTAGCAAAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATAATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:7730219 original size:16 final size:16
Alignment explanation
Indices: 7730182--7730223 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7730172 TTAATCATAT
*
7730182 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
7730198 TT-AAATATATTATAA
1 TTAAAATATATTATAA
7730213 TTAAAATATAT
1 TTAAAATATAT
7730224 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:7730230 original size:14 final size:15
Alignment explanation
Indices: 7730191--7730232 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7730181 TTTAAACATA
*
7730191 ATTATTATTAAATAT
1 ATTATAATTAAATAT
7730206 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
7730220 A-TATAATTTAATA
1 ATTATAATTAAATA
7730233 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:7730310 original size:120 final size:121
Alignment explanation
Indices: 7730180--7730470 Score: 473
Period size: 120 Copynumber: 2.4 Consensus size: 121
7730170 ATTTAATCAT
*
7730180 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
7730245 ATTAATATTCTTATACGAATTTACTCAAATCATAATATATGATACTGTAAAAT-ATAA
66 ATTAATATTCTTATACGAATTTACTCAAATCATAATATATGATACTGT-AAATGA-AA
*
7730302 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAACTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
* *
7730365 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATATTGTAAATGAAA
66 ATTAATATTCTTATACGAATTTACTCAAATCATAATATATGATACTGTAAATGAAA
* * *
7730421 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAA
7730471 AATAATTTAA
Statistics
Matches: 159, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
119 7 0.04
120 147 0.92
121 4 0.03
122 1 0.01
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
ATTAATATTCTTATACGAATTTACTCAAATCATAATATATGATACTGTAAATGAAA
Found at i:7730341 original size:16 final size:16
Alignment explanation
Indices: 7730301--7730343 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
7730291 GTAAAATATA
*
7730301 AATTAACATA-ATTAT
1 AATTAAAATATATTAT
*
7730316 TATT-AAATATATTAT
1 AATTAAAATATATTAT
7730331 AATTAAAATATAT
1 AATTAAAATATAT
7730344 AACTTAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 4 0.17
15 11 0.48
16 8 0.35
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
AATTAAAATATATTAT
Found at i:7730564 original size:24 final size:25
Alignment explanation
Indices: 7730518--7730565 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
7730508 TATGAATTTG
7730518 TATAATTTAAAATAATAATTATTACA
1 TATAATTTAAAAT-ATAATTATTACA
7730544 TATAATTTAATAAT-TAA-TATTA
1 TATAATTTAA-AATATAATTATTA
7730566 AATTTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 3 0.14
26 10 0.48
27 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TATAATTTAAAATATAATTATTACA
Found at i:7730593 original size:92 final size:91
Alignment explanation
Indices: 7730493--7730701 Score: 260
Period size: 92 Copynumber: 2.3 Consensus size: 91
7730483 TAATTATAAC
* * *
7730493 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTTTATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAAT-A
* *
7730557 TTAATAT-TAAATTTCATAAAATTCTTGA
64 GTAATATAT-AATTTCATAAAATTCTTAA
* * *
7730585 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTTTATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
*
7730650 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
* * *
7730676 TAATAAAATGTTTTTATATGAATTTA
1 TAATAAATTATATTT-TATGAATTTA
7730702 CTAAAATCAA
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
91 35 0.35
92 63 0.62
93 3 0.03
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.46
Consensus pattern (91 bp):
TAATAAATTATATTTTATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
AATATATAATTTCATAAAATTCTTAA
Found at i:7735543 original size:13 final size:13
Alignment explanation
Indices: 7735525--7735551 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7735515 TAAAAACAAC
7735525 TATATTGTTTAAA
1 TATATTGTTTAAA
7735538 TATATTGTTTAAA
1 TATATTGTTTAAA
7735551 T
1 T
7735552 TAAACCGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (13 bp):
TATATTGTTTAAA
Found at i:7737676 original size:98 final size:98
Alignment explanation
Indices: 7737507--7737698 Score: 375
Period size: 98 Copynumber: 2.0 Consensus size: 98
7737497 ATACAATAAA
7737507 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
7737572 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
*
7737605 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
7737670 CCTTTAGAATCCCAAACTCGGAATATTTC
66 CCTTTAGAATCCCAAACTCGGAATATTTC
7737699 TTTCATGATT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.26
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:7738380 original size:24 final size:25
Alignment explanation
Indices: 7738351--7738399 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
7738341 ATATAAATAT
7738351 GAAAATATTC-ATTAAAAAATATAG
1 GAAAATATTCGATTAAAAAATATAG
*
7738375 GAAAATATTCGTTTTAAAAAATATA
1 GAAAATATTCG-ATTAAAAAATATA
7738400 TATACATGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.45
26 12 0.55
ACGTcount: A:0.55, C:0.04, G:0.08, T:0.33
Consensus pattern (25 bp):
GAAAATATTCGATTAAAAAATATAG
Found at i:7739179 original size:19 final size:19
Alignment explanation
Indices: 7739155--7739267 Score: 199
Period size: 19 Copynumber: 5.8 Consensus size: 19
7739145 AATCATATAT
7739155 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7739174 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7739193 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
7739214 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
7739233 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7739252 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
7739268 CTCAAAAATT
Statistics
Matches: 90, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
19 71 0.79
21 19 0.21
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7739220 original size:40 final size:38
Alignment explanation
Indices: 7739148--7739267 Score: 199
Period size: 40 Copynumber: 3.2 Consensus size: 38
7739138 ATTACAAAAT
7739148 CATAT-AT-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
7739184 CATATCATATCTAAGATTGCATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGC--ATATCATATCTAAGATTG
*
7739224 CATATCATATCTAGGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
7739262 CATATC
1 CATATC
7739268 CTCAAAAATT
Statistics
Matches: 79, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
36 5 0.06
37 2 0.03
38 35 0.44
40 37 0.47
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:7739222 original size:59 final size:59
Alignment explanation
Indices: 7739155--7739266 Score: 215
Period size: 59 Copynumber: 1.9 Consensus size: 59
7739145 AATCATATAT
7739155 TCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
*
7739214 TCTAAGATTGCATATCATATCTAGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGCATAT
7739267 CCTCAAAAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.38
Consensus pattern (59 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Found at i:7739590 original size:44 final size:44
Alignment explanation
Indices: 7739538--7739779 Score: 189
Period size: 44 Copynumber: 5.6 Consensus size: 44
7739528 GATCTGCTCT
*
7739538 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATTCACTCCA
1 CTGCAACTTCAGGGAGATAAGATCTAAGGTTTTAATTCACTCCA
* * *
7739582 CTGCAACTTCAGGGAGATATGAT-TATCGGGTTTAA-TCTACTCCA
1 CTGCAACTTCAGGGAGATAAGATCTA-AGGTTTTAATTC-ACTCCA
* * * * *
7739626 CTACAACTTCAGGGAGATAAGA-CT-TGCTTACTT-AGTCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGATCTAAGGTT--TTAATTC-ACTCCA
* * *** *
7739670 CTGCAACTTCAGGGAGATAAGAT-T--TGATGCGATCTC-CT-CT
1 CTGCAACTTCAGGGAGATAAGATCTAAGGTTTTAAT-TCACTCCA
* * *
7739710 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGGGAGATAAGATCTAAGGTTTTAATTCACTCCA
*
7739754 CTGCAACTTCAGGGAGATAGGATCTA
1 CTGCAACTTCAGGGAGATAAGATCTA
7739780 CAATCTTCAA
Statistics
Matches: 156, Mismatches: 28, Indels: 28
0.74 0.13 0.13
Matches are distributed among these distances:
40 23 0.15
41 3 0.02
42 4 0.03
43 14 0.09
44 112 0.72
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (44 bp):
CTGCAACTTCAGGGAGATAAGATCTAAGGTTTTAATTCACTCCA
Found at i:7739743 original size:172 final size:172
Alignment explanation
Indices: 7739452--7739772 Score: 554
Period size: 172 Copynumber: 1.9 Consensus size: 172
7739442 TAGTCTACCT
* * *
7739452 CACTGCAACTTCAGGACGATAAGACTTGCTTATTTAGTCTGCTTCACTGCAACTTCAGGGAGATA
1 CACTACAACTTCAGGACGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATA
* *
7739517 AGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATTCACTCCA
66 AGACTAGATGCGATCTCCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCA
7739582 CTGCAACTTCAGGGAGATATGATTATCGGGTTTAATCTACTC
131 CTGCAACTTCAGGGAGATATGATTATCGGGTTTAATCTACTC
7739624 CACTACAACTTCAGGGA-GATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGAT
1 CACTACAACTTCA-GGACGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGAT
* * *
7739688 AAGATTTGATGCGATCTCCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCC
65 AAGACTAGATGCGATCTCCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCC
7739753 ACTGCAACTTCAGGGAGATA
130 ACTGCAACTTCAGGGAGATA
7739773 GGATCTACAA
Statistics
Matches: 140, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
172 137 0.98
173 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (172 bp):
CACTACAACTTCAGGACGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATA
AGACTAGATGCGATCTCCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCA
CTGCAACTTCAGGGAGATATGATTATCGGGTTTAATCTACTC
Found at i:7739961 original size:132 final size:132
Alignment explanation
Indices: 7739764--7740416 Score: 1189
Period size: 132 Copynumber: 4.9 Consensus size: 132
7739754 CTGCAACTTC
*
7739764 AGGGAGATAGGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
*
7739829 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTAC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
7739894 TT
131 TT
7739896 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
* * *
7739961 TTAAATCTGCTTCTCACTATCTTGGAAAGATAAAATCCGTCGTCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
7740026 TT
131 TT
*
7740028 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
** *
7740093 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
*
7740158 TC
131 TT
7740160 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
*
7740225 TTAAATCTGCTTCCCACTATCTTGGAAATATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
7740290 TT
131 TT
*
7740292 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
*
7740357 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACT
7740417 GTCAATGCAG
Statistics
Matches: 499, Mismatches: 22, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 499 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (132 bp):
AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
TT
Found at i:7740051 original size:44 final size:44
Alignment explanation
Indices: 7739856--7740342 Score: 162
Period size: 44 Copynumber: 11.1 Consensus size: 44
7739846 TATCTTGGAA
** * * *
7739856 AGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTACTTAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
7739900 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * *
7739944 AGACAAG-GCT-TGGTGGCTTAAATCTGCTTCTCACTA-T-CTT-GGAA
1 AGATAAGATCTACAGT--CTTCAATCTGC-TC-CACTACTGCTTAGG-G
* *
7739988 AGATAAAATCCGT-C-GTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGAT-C-TACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
7740032 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * *
7740076 AGACAAG-GCT-TGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATCTACAGT--CTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * * ** *
7740120 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTCAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
7740164 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * *
7740208 AGACAAG-GCT-TGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATCTACAGT--CTTCAATCTGC-T-CCACTACTGCTTAGG-G
* ** * *
7740252 ATATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
7740296 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
7740340 AGA
1 AGA
7740343 CAAGGCTTGG
Statistics
Matches: 308, Mismatches: 102, Indels: 66
0.65 0.21 0.14
Matches are distributed among these distances:
42 21 0.07
43 21 0.07
44 232 0.75
45 15 0.05
46 18 0.06
47 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (44 bp):
AGATAAGATCTACAGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:7741422 original size:350 final size:350
Alignment explanation
Indices: 7740781--7741484 Score: 1372
Period size: 350 Copynumber: 2.0 Consensus size: 350
7740771 CCCAAGGGTA
7740781 AAAATATCCGGCCTTTTCTCAATCCTCTGCTATCACAATTCGAAGATACATAATGCGAAACTCTT
1 AAAATATCCGGCCTTTTCTCAATCCTCTGCTATCACAATTCGAAGATACATAATGCGAAACTCTT
7740846 TGGTTTCCTACACCATTCCTAGGGTGTCATATCAAATGATCACGCACAAATGAAGGATTCTCTTC
66 TGGTTTCCTACACCATTCCTAGGGTGTCATATCAAATGATCACGCACAAATGAAGGATTCTCTTC
7740911 TCCAAGGAAACCCCTTCTTATTGTTTGGTGATTTAAACTTTGTCACCCATCTGACATCCGGTCAT
131 TCCAAGGAAACCCCTTCTTATTGTTTGGTGATTTAAACTTTGTCACCCATCTGACATCCGGTCAT
* *
7740976 TTTGTTTGATTAATGTTTTTGAAAACAAAATCCAAAGAGATAGTCTTCATTTAGACTTTTCCTTC
196 TTTGTTTGATCAATGTTTTTGAAAACAAAATCCAAAGAGATAGTCTTCATTTAGACTCTTCCTTC
7741041 TCAGATTTCCAACCTTTAAACTTGGTGCGTTCTAAACAATAGTCCTGTTTCAGGCTCCTGTATTA
261 TCAGATTTCCAACCTTTAAACTTGGTGCGTTCTAAACAATAGTCCTGTTTCAGGCTCCTGTATTA
7741106 TTTAGAAACTTCTAGAGTAATATGC
326 TTTAGAAACTTCTAGAGTAATATGC
*
7741131 AAAATATCTGGCCTTTTCTCAATCCTCTGCTATCACAATTCGAAGATACATAATGCGAAACTCTT
1 AAAATATCCGGCCTTTTCTCAATCCTCTGCTATCACAATTCGAAGATACATAATGCGAAACTCTT
7741196 TGGTTTCCTACACCATTCCTAGGGTGTCATATCAAATGATCACGCACAAATGAAGGATTCTCTTC
66 TGGTTTCCTACACCATTCCTAGGGTGTCATATCAAATGATCACGCACAAATGAAGGATTCTCTTC
7741261 TCCAAGGAAACCCCTTCTTATTGTTTGGTGATTTAAACTTTGTCACCCATCTGACATCCGGTCAT
131 TCCAAGGAAACCCCTTCTTATTGTTTGGTGATTTAAACTTTGTCACCCATCTGACATCCGGTCAT
*
7741326 TTTGTTTGATCAATGTTTTTGACAACAAAATCCAAAGAGATAGTCTTCATTTAGACTCTTCCTTC
196 TTTGTTTGATCAATGTTTTTGAAAACAAAATCCAAAGAGATAGTCTTCATTTAGACTCTTCCTTC
7741391 TCAGATTTCCAACCTTTAAACTTGGTGCGTTCTAAACAATAGTCCTGTTTCAGGCTCCTGTATTA
261 TCAGATTTCCAACCTTTAAACTTGGTGCGTTCTAAACAATAGTCCTGTTTCAGGCTCCTGTATTA
7741456 TTTAGAAACTTCTAGAGTAATATGC
326 TTTAGAAACTTCTAGAGTAATATGC
7741481 AAAA
1 AAAA
7741485 CTTCCTTCGT
Statistics
Matches: 350, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
350 350 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (350 bp):
AAAATATCCGGCCTTTTCTCAATCCTCTGCTATCACAATTCGAAGATACATAATGCGAAACTCTT
TGGTTTCCTACACCATTCCTAGGGTGTCATATCAAATGATCACGCACAAATGAAGGATTCTCTTC
TCCAAGGAAACCCCTTCTTATTGTTTGGTGATTTAAACTTTGTCACCCATCTGACATCCGGTCAT
TTTGTTTGATCAATGTTTTTGAAAACAAAATCCAAAGAGATAGTCTTCATTTAGACTCTTCCTTC
TCAGATTTCCAACCTTTAAACTTGGTGCGTTCTAAACAATAGTCCTGTTTCAGGCTCCTGTATTA
TTTAGAAACTTCTAGAGTAATATGC
Found at i:7747970 original size:98 final size:98
Alignment explanation
Indices: 7747801--7747992 Score: 348
Period size: 98 Copynumber: 2.0 Consensus size: 98
7747791 ATACAATAAA
*
7747801 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGAGCACGATC
*
7747866 CCTTTAGAATCCTAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
* *
7747899 ACTTTAAAAGAGCATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGAGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGAGCACGATC
7747964 CCTTTAGAATCCCAAACTCGGAATATTTC
66 CCTTTAGAATCCCAAACTCGGAATATTTC
7747993 TTTCATGATT
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGAGCACGATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:7748681 original size:23 final size:24
Alignment explanation
Indices: 7748645--7748698 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 24
7748635 ATATACATAT
7748645 AAATAT-GAAAATATTC-ATTAAA
1 AAATATAGAAAATATTCGATTAAA
* *
7748667 AAATATAGGAAATATTCGTTTTAAA
1 AAATATAGAAAATATTCG-ATTAAA
7748692 AAATATA
1 AAATATA
7748699 TATACATGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 6 0.22
23 9 0.33
25 12 0.44
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (24 bp):
AAATATAGAAAATATTCGATTAAA
Found at i:7749477 original size:19 final size:19
Alignment explanation
Indices: 7749453--7749584 Score: 212
Period size: 19 Copynumber: 6.8 Consensus size: 19
7749443 AATCATATAT
7749453 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
7749472 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
7749491 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7749510 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
7749531 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7749550 TCT-AGAATTGCATATCATA
1 TCTAAG-ATTGCATATCATA
7749569 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
7749585 CTCAAAAATT
Statistics
Matches: 105, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
18 2 0.02
19 82 0.78
20 2 0.02
21 19 0.18
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7749537 original size:59 final size:59
Alignment explanation
Indices: 7749446--7749583 Score: 214
Period size: 59 Copynumber: 2.4 Consensus size: 59
7749436 ATTACAAAAT
*
7749446 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAGATTATATATCATATCTA-AGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAGA-ATTG
*
7749501 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGCATATCATATCTAGAATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAGAATTG
7749560 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTGCATAT
7749584 CCTCAAAAAT
Statistics
Matches: 76, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 11 0.14
59 57 0.75
60 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.38
Consensus pattern (59 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAGAATTG
Found at i:7750721 original size:6 final size:6
Alignment explanation
Indices: 7750710--7750740 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
7750700 ATTGATAATA
7750710 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT A
7750741 AAAATATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
ATTTTT
Found at i:7751762 original size:6 final size:6
Alignment explanation
Indices: 7751751--7751775 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7751741 ATTGATAATA
7751751 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
7751776 AAAATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:7751951 original size:16 final size:16
Alignment explanation
Indices: 7751930--7751964 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
7751920 TTTTATTTTC
7751930 ATAATAAATTTTAAA-A
1 ATAAT-AATTTTAAATA
7751946 ATAATAATTTTAAATA
1 ATAATAATTTTAAATA
7751962 ATA
1 ATA
7751965 TTCTTCTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAATAATTTTAAATA
Found at i:7753849 original size:17 final size:17
Alignment explanation
Indices: 7753827--7753864 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7753817 AAATTAAATG
*
7753827 TTTTAAATT-TATATTTA
1 TTTT-AATTATATATTAA
7753844 TTTTAATTATATATTAA
1 TTTTAATTATATATTAA
7753861 TTTT
1 TTTT
7753865 TGAGAAGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTAATTATATATTAA
Found at i:7753987 original size:17 final size:16
Alignment explanation
Indices: 7753961--7753992 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
7753951 AAAAGTAAAT
7753961 AAATAAAGGAAGAAAG
1 AAATAAAGGAAGAAAG
7753977 AAATAAAAGGAAGAAA
1 AAAT-AAAGGAAGAAA
7753993 ATCAATTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (16 bp):
AAATAAAGGAAGAAAG
Found at i:7754691 original size:6 final size:7
Alignment explanation
Indices: 7754673--7754697 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7754663 TTATTAATAA
7754673 ATTTTTT
1 ATTTTTT
7754680 ATTTTTT
1 ATTTTTT
7754687 ATTTTTT
1 ATTTTTT
7754694 ATTT
1 ATTT
7754698 AATTTAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
ATTTTTT
Found at i:7759037 original size:2 final size:2
Alignment explanation
Indices: 7759030--7759058 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7759020 ATGAGCGTTT
7759030 TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7759059 CTTTTTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7759950 original size:22 final size:23
Alignment explanation
Indices: 7759910--7759955 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
7759900 AAACAAATTA
7759910 TCATATTTATATAATT-AAATAT
1 TCATATTTATATAATTAAAATAT
*
7759932 TCATATTT-TATACTATAAAATAT
1 TCATATTTATATAAT-TAAAATAT
7759955 T
1 T
7759956 TATAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 5 0.24
22 9 0.43
23 7 0.33
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (23 bp):
TCATATTTATATAATTAAAATAT
Found at i:7759952 original size:23 final size:22
Alignment explanation
Indices: 7759910--7759955 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
7759900 AAACAAATTA
*
7759910 TCATATTTATATAATTAAATAT
1 TCATATTTATATAATAAAATAT
7759932 TCATATTT-TATACTATAAAATAT
1 TCATATTTATATA--ATAAAATAT
7759955 T
1 T
7759956 TATAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 9 0.43
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (22 bp):
TCATATTTATATAATAAAATAT
Found at i:7759976 original size:12 final size:12
Alignment explanation
Indices: 7759956--7759998 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
7759946 ATAAAATATT
7759956 TATAAATTTTAA
1 TATAAATTTTAA
* *
7759968 TATATA-TTTAT
1 TATAAATTTTAA
7759979 TATTAAATTTTAA
1 TA-TAAATTTTAA
7759992 TATAAAT
1 TATAAAT
7759999 ATAAATATAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 6 0.24
12 13 0.52
13 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TATAAATTTTAA
Found at i:7760600 original size:29 final size:29
Alignment explanation
Indices: 7760567--7760622 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
7760557 AAAAAGCCTA
7760567 TTTTTTAAAAAATTACCGAAATGGGCCGG
1 TTTTTTAAAAAATTACCGAAATGGGCCGG
** * *
7760596 TTTTTTAATTATTTACCGGAATGGGCC
1 TTTTTTAAAAAATTACCGAAATGGGCC
7760623 ATTTTCCGCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.38
Consensus pattern (29 bp):
TTTTTTAAAAAATTACCGAAATGGGCCGG
Found at i:7764412 original size:29 final size:29
Alignment explanation
Indices: 7764374--7765340 Score: 810
Period size: 29 Copynumber: 35.5 Consensus size: 29
7764364 CATGGTAAGA
* * *
7764374 GTTTTCAATTAAATTAGGTTAGAGTTAGA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7764403 GATTTTAATTAAGA-TAGGTTAGGGTTAGG
1 GTTTTTAATTAA-ATTAGGTTAGGGTTAGG
* *
7764432 G-TTTTCATGTAAAATAGGTTAGGGTTAGG
1 GTTTTTAAT-TAAATTAGGTTAGGGTTAGG
*
7764461 GTTTTTAACT-AA--A--TTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7764484 GTTTTTAATTAAATTAGGATAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7764513 GATTTTAATTAAAATAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* * *
7764542 G-TTTTCATGTAAAATAGGTTAGGGTTAAG
1 GTTTTTAAT-TAAATTAGGTTAGGGTTAGG
*
7764571 GTTTTTAACTAAATTAGGTTA--G--A--
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
7764594 GTTTTTAATTAAATTAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7764623 GATTTTAATTAAAATAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7764652 G-TTTTCATGTAAAATAGGTTAGGGTTAGG
1 GTTTTTAAT-TAAATTAGGTTAGGGTTAGG
*
7764681 GTTTTTAACT-AA--A--TTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*** *
7764704 GTTTTTAATTAAATTAAAATAGGGTAAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*** *
7764733 GTTTTTAATTAAATTAAAATAGGGTAAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
**
7764762 GTTTTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7764790 GTTTTTAATTAAATTAGGTCAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7764819 GATTTTAATTAAA-TAGGTTATGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7764847 G-TTTTCATGTAAAATAGGTTAGGGTTA-G
1 GTTTTTAAT-TAAATTAGGTTAGGGTTAGG
*
7764875 GTTTTTAACTAAATTAGGTTA--G--A--
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *** *
7764898 ATTTTTAATTAAATTAAAATAGGGTAAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *** *
7764927 GCTTTTAATTAAATTAAAATAGGGTAAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
**
7764956 GTTTTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
**
7764984 GTTTTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7765012 GTTTTTAATT--A--A-GTTA-AGTTAGA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7765035 GTTTTTAATTAAAATAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7765064 G-TTTTCATGTAAAATAGGTTAGGGTTAGG
1 GTTTTTAAT-TAAATTAGGTTAGGGTTAGG
*
7765093 GTTTTTAACT-AA--A--TTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
**
7765116 GTTTTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7765144 GTTTTTAA-TCAA--A--TTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
**
7765167 GTTTTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7765195 GTTTTTAATT--A--A-GTTA-AGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7765218 GTTTTTAATTAAATTAGGTTAGGGTAAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7765247 GTTTTTAATTAAATTAAGTTA-GGTTAGA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7765275 GTTTTTAATT--A--A-GTTA-AGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
7765298 GTTTTTAATTAAATTAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7765327 GTTTTTAATCAAAT
1 GTTTTTAATTAAAT
7765341 AATGTCAAAA
Statistics
Matches: 801, Mismatches: 71, Indels: 132
0.80 0.07 0.13
Matches are distributed among these distances:
23 158 0.20
24 22 0.03
25 7 0.01
26 11 0.01
27 15 0.02
28 199 0.25
29 368 0.46
30 21 0.03
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.42
Consensus pattern (29 bp):
GTTTTTAATTAAATTAGGTTAGGGTTAGG
Found at i:7764481 original size:23 final size:23
Alignment explanation
Indices: 7764454--7764509 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
7764444 AATAGGTTAG
7764454 GGTTAGGGTTTTTAACTAAATTA
1 GGTTAGGGTTTTTAACTAAATTA
*
7764477 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAACTAAATTA
*
7764500 GGATAGGGTT
1 GGTTAGGGTT
7764510 AGGGATTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.29, C:0.02, G:0.27, T:0.43
Consensus pattern (23 bp):
GGTTAGGGTTTTTAACTAAATTA
Found at i:7764532 original size:23 final size:23
Alignment explanation
Indices: 7764454--7765323 Score: 257
Period size: 28 Copynumber: 32.4 Consensus size: 23
7764444 AATAGGTTAG
* *
7764454 GGTTAGGGTTTTTAACTAAATTA
1 GGTTAGGGTTTTTAATTAAAATA
7764477 GGTTAGGGTTTTTAATTAAATTAGGATA
1 GGTTAGGGTTTTTAATT-AA--A--ATA
*
7764505 GGGTTAGGGATTTTAATTAAAATA
1 -GGTTAGGGTTTTTAATTAAAATA
*
7764529 GGTTAGGGTTAGGGTTTTCATGTAAAATA
1 GGTTAGGG-T----TTTTAAT-TAAAATA
* *
7764558 GGTTAGGGTTAAGGTTTTTAACTAAATTA
1 GGTTA--G----GGTTTTTAATTAAAATA
*
7764587 GGTTAGAGTTTTTAATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATTAAA--A---TA
*
7764615 GGGTTAGGGATTTTAATTAAAATA
1 -GGTTAGGGTTTTTAATTAAAATA
*
7764639 GGTTAGGGTTAGGGTTTTCATGTAAAATAGGTTA
1 GGTTAGGG-T----TTTTAAT-T-AAA-A---TA
* *
7764673 GGGTTAGGGTTTTTAACTAAATTA
1 -GGTTAGGGTTTTTAATTAAAATA
7764697 GGTTAGGGTTTTTAATTAAATTAAAATA
1 GGTTAGGG--TTT--TT-AATTAAAATA
*
7764725 GGGTAAGGGTTTTTAATTAAATTAAAATA
1 -GGTTAGGG--TTT--TT-AATTAAAATA
*
7764754 GGGTAAGGGTTTTTAATTAAATTAAATTA
1 -GGTTAGGGTTTTTAATT--A--AAA-TA
7764783 GGTTAGGGTTTTTAATTAAATTAGGTCA
1 GGTTAGGGTTTTTAATTAAA--A--T-A
*
7764811 GGGTTAGGGATTTTAATTAAATAGGTTA
1 -GGTTAGGGTTTTTAATTAAA-A---TA
*
7764839 TGGTTAGGG-TTTTCATGTAAAATA
1 -GGTTAGGGTTTTTAAT-TAAAATA
* *
7764863 GGTTAGGGTTAGGTTTTTAACTAAATTA
1 GGTTA--G---GGTTTTTAATTAAAATA
**
7764891 GGTTAGAATTTTTAATTAAATTAAAATA
1 GGTTAG--GGTTT--TT-AATTAAAATA
*
7764919 GGGTAAGGGCTTTTAATTAAATTAAAATA
1 -GGTTAGGG-TTTT---T-AATTAAAATA
*
7764948 GGGTAAGGGTTTTTAATTAAATTAAATTA
1 -GGTTAGGGTTTTTAATT--A--AAA-TA
7764977 GGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAGGGTTTTTAATT--A--AAA-TA
**
7765005 GGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAAATA
* *
7765028 AGTTAGAGTTTTTAATTAAAATA
1 GGTTAGGGTTTTTAATTAAAATA
*
7765051 GGTTAGGGTTAGGGTTTTCATGTAAAATAGGTTA
1 GGTTAGGG-T----TTTTAAT-T-AAA-A---TA
* *
7765085 GGGTTAGGGTTTTTAACTAAATTA
1 -GGTTAGGGTTTTTAATTAAAATA
7765109 GGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAGGGTTTTTAATT--A--AAA-TA
* *
7765137 GGTTAGGGTTTTTAATCAAATTA
1 GGTTAGGGTTTTTAATTAAAATA
7765160 GGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAGGGTTTTTAATT--A--AAA-TA
**
7765188 GGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAAATA
*
7765211 AGTTAGGGTTTTTAATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATTAAA--A---TA
*
7765239 GGGTAAGGGTTTTTAATTAAATTAAGTTA
1 -GGTTAGGGTTTTTAATT-AA--AA--TA
* **
7765268 GGTTAGAGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAAATA
* *
7765291 AGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAAATA
7765314 GGTTAGGGTT
1 GGTTAGGGTT
7765324 AGGGTTTTTA
Statistics
Matches: 671, Mismatches: 72, Indels: 208
0.71 0.08 0.22
Matches are distributed among these distances:
23 169 0.25
24 28 0.04
25 13 0.02
26 11 0.02
27 23 0.03
28 202 0.30
29 172 0.26
30 24 0.04
31 3 0.00
32 1 0.00
34 7 0.01
35 18 0.03
ACGTcount: A:0.33, C:0.01, G:0.23, T:0.42
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAAATA
Found at i:7764567 original size:110 final size:110
Alignment explanation
Indices: 7764374--7765340 Score: 840
Period size: 110 Copynumber: 8.9 Consensus size: 110
7764364 CATGGTAAGA
* * * *
7764374 GTTTTCAATTAAATTAGGTTAGAGTTAGAGATTTTAATTAAGATAGGTTAGGGTTAGGGTTTTCA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTCA
* *
7764439 TGTAAAATAGGTTAGGGTTAGGGTTTTTAACTAAATTAGGTTAGG
66 TGTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGG
*
7764484 GTTTTTAATTAAATTAGGATAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTCA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTCA
* * * *
7764549 TGTAAAATAGGTTAGGGTTAAGGTTTTTAACTAAATTAGGTTAGA
66 TGTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGG
7764594 GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTCA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTCA
* *
7764659 TGTAAAATAGGTTAGGGTTAGGGTTTTTAACTAAATTAGGTTAGG
66 TGTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGG
*** * * * *** * *
7764704 GTTTTTAATTAAATTAAAATAGGGTAAGGGTTTTTAATTAAATTAAAATAGGGTAAGGGTTTTTA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGG-TTTTC
**
7764769 AT-TAAATTAAATTA-GGTTAGGGTTTTTAATTAAATTAGGTCAGGGTTAGG
65 ATGTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAA-T---T-A-GGTTAGG
* * * *
7764819 GATTTTAATTAAA-TAGGTTATGGTTAGGG-TTTTCATGTAAAATAGGTTAGGGTTA-GGTTTTT
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAAT-TAAAATAGGTTAGGGTTAGGGTTTTC
** ** * *
7764881 AACTAAATTAGGTTAGAATT----TTTAATTAAATTAAAATAGGGTAAGG
65 ATGTAAATTAGGTTAGGGTTAGGGTTT--TT-AATTAAATTA-GGTTAGG
* *** * * * ** *
7764927 GCTTTTAATTAAATTAAAATAGGGTAAGGGTTTTTAATTAAATTAAATTA-GGTTAGGGTTTTTA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGG-TTTTC
** * * *
7764991 AT-TAAATTAAATTA-GGTTAGGGTTTTTAATTAAGTTAAGTTAGA
65 ATGTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGG
* * *
7765035 GTTTTTAATTAAAATAGGTTAGGGTTAGGG-TTTTCATGTAAAATAGGTTAGGGTTAGGGTTTTT
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAAT-TAAAATAGGTTAGGGTTAGGGTTTTC
**
7765099 AACTAAATTAGGTTAGGGTT----TTTAATTAAATTAAATTAGGTTAGG
65 ATGTAAATTAGGTTAGGGTTAGGGTTT--TT-AATTAAATTAGGTTAGG
* * **
7765144 GTTTTTAATCAAATTAGGTTAGGG-T-----TTTTAATTAAATTAAATTA-GGTTAGGG-TTT--
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTCA
* *
7765199 T-T-AATTAAGTTA-AGTTAGGGTTTTTAATTAAATTAGGTTAGGGTAAGG
66 TGTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGG-T----T-AGG
* * * * *
7765247 GTTTTTAATTAAATTAAGTTA-GGTTAGAGTTTTTAATT---A-A-GTTA-AGTTAGGGTTTTTA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGG-TTTTC
*
7765305 AT-TAAATTAGGTTAGGGTTAGGGTTTTTAATCAAAT
65 ATGTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAT
7765341 AATGTCAAAA
Statistics
Matches: 707, Mismatches: 100, Indels: 101
0.78 0.11 0.11
Matches are distributed among these distances:
96 3 0.00
97 21 0.03
98 4 0.01
100 3 0.00
101 3 0.00
102 11 0.02
103 42 0.06
104 7 0.01
105 3 0.00
106 3 0.00
107 8 0.01
108 89 0.13
109 133 0.19
110 289 0.41
111 6 0.01
112 10 0.01
113 26 0.04
114 27 0.04
115 19 0.03
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.42
Consensus pattern (110 bp):
GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTCA
TGTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGG
Found at i:7765176 original size:18 final size:21
Alignment explanation
Indices: 7765130--7765242 Score: 91
Period size: 23 Copynumber: 4.8 Consensus size: 21
7765120 TTAATTAAAT
7765130 TAAATTAGGTTAGGGTTTTTAA
1 TAAATTAGGTTAGGGTTTTT-A
7765152 TCAAATTAGGTTAGGGTTTTTAATTAAA
1 T-AAATTAGGTTAGGG--TTT--TT--A
7765180 TTAAATTAGGTTAGGGTTTTTAA
1 -TAAATTAGGTTAGGGTTTTT-A
* *
7765203 TTAAGTTAAGTTAGGGTTTTTAA
1 -TAAATTAGGTTAGGGTTTTT-A
7765226 TTAAATTAGGTTAGGGT
1 -TAAATTAGGTTAGGGT
7765243 AAGGGTTTTT
Statistics
Matches: 80, Mismatches: 4, Indels: 13
0.82 0.04 0.13
Matches are distributed among these distances:
22 1 0.01
23 52 0.65
24 2 0.03
25 3 0.04
26 3 0.04
27 2 0.03
28 16 0.20
29 1 0.01
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.45
Consensus pattern (21 bp):
TAAATTAGGTTAGGGTTTTTA
Found at i:7765285 original size:52 final size:54
Alignment explanation
Indices: 7764374--7765335 Score: 650
Period size: 52 Copynumber: 17.7 Consensus size: 54
7764364 CATGGTAAGA
* * * * *
7764374 GTTTTCAATTAAATTAGGTTAGAGTTAGAGATTTTAATTAAGATAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAG-G-GTTT-ATTAA-TTAAGTTAGGGTTAGG
* * * *
7764432 G-TTTTCATGTAAAATAGGTTAGGGTTAGGGTTT-TTAACTAAATTA-GGTTAGG
1 GTTTTTAAT-TAAATTAGGTTAGGGTTAGGGTTTATTAATTAAGTTAGGGTTAGG
* * *
7764484 GTTTTTAATTAAATTAGGATAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGG--TTT-ATT-AATTAAGTTAGGGTTAGG
* * * * * *
7764542 G-TTTTCATGTAAAATAGGTTAGGGTTAAGGTTT-TTAACTAAATTA-GGTTAGA
1 GTTTTTAAT-TAAATTAGGTTAGGGTTAGGGTTTATTAATTAAGTTAGGGTTAGG
* *
7764594 GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGG--TTT-ATT-AATTAAGTTAGGGTTAGG
* * * *
7764652 G-TTTTCATGTAAAATAGGTTAGGGTTAGGGTTT-TTAACTAAATTA-GGTTAGG
1 GTTTTTAAT-TAAATTAGGTTAGGGTTAGGGTTTATTAATTAAGTTAGGGTTAGG
*** * ** *
7764704 GTTTTTAATTAAATTAAAATAGGGTAAGGGTTTTTAATTAAATTAAAATAGGGTAAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGG--TTT-ATT-AATTAAGTTAGGGTTAGG
** * *
7764762 GTTTTTAATTAAATTAAATTA-GGTTAGGGTTTTTAATTAAATTAGGTCAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGG--TTT-ATT-AATTAAGTTAGGGTTAGG
* * * *
7764819 GATTTTAATTAAA-TAGGTTATGGTTAGGGTTTTCATGTAAAATAGGTTAGGGTTA-G
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTT-AT-T-AATTAAGTTAGGGTTAGG
* ** ** *
7764875 GTTTTTAACTAAATTAGGTTAGAATT----TTTAATTAAATTAAAATAGGGTAAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT-ATT-AATTAAGTTAGGGTTAGG
* *** * *
7764927 GCTTTTAATTAAATTAAAATAGGGTAAGGGTTTTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGG--TTT-ATT-AATTAAGTTAGGGTTAGG
** * *
7764984 GTTTTTAATTAAATTAAATTA-GGTTAGGGTTT-TTAATTAAGTTA-AGTTAGA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTATTAATTAAGTTAGGGTTAGG
* * *
7765035 GTTTTTAATTAAAATAGGTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTT-AT-T-AATTAAGTTAGGGTTAGG
* *
7765093 GTTTTTAACTAAATTAGGTTAGGGTT----TTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT-ATT-AATTAAGTTAGGGTTAGG
* *
7765144 GTTTTTAATCAAATTAGGTTAGGGTT----TTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT-ATT-AATTAAGTTAGGGTTAGG
* * * *
7765195 GTTTTTAATTAAGTTAAGTTAGGGTT----TTTAATTAAATTAGGTTAGGGTAAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT-ATT-AATTAAGTTAGGGTTAGG
* * *
7765247 GTTTTTAATTAAATTAAGTTA-GGTTAGAGTTT-TTAATTAAGTTA-AGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTATTAATTAAGTTAGGGTTAGG
7765298 GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT-TTAAT
1 GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTATTAAT
7765336 CAAATAATGT
Statistics
Matches: 747, Mismatches: 110, Indels: 100
0.78 0.11 0.10
Matches are distributed among these distances:
51 169 0.23
52 170 0.23
53 47 0.06
54 20 0.03
55 4 0.01
56 46 0.06
57 148 0.20
58 143 0.19
ACGTcount: A:0.33, C:0.01, G:0.23, T:0.42
Consensus pattern (54 bp):
GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTATTAATTAAGTTAGGGTTAGG
Found at i:7767503 original size:14 final size:15
Alignment explanation
Indices: 7767486--7767519 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7767476 AATAAATATC
7767486 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
7767500 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
7767515 TAAAA
1 TAAAA
7767520 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:7767748 original size:22 final size:22
Alignment explanation
Indices: 7767718--7767759 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7767708 TTTGGAGATT
*
7767718 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
7767740 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
7767760 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:7767767 original size:30 final size:30
Alignment explanation
Indices: 7767731--7767789 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
7767721 TTGAAGGAAA
*
7767731 TTGAGAGGATTTTGGAAGGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGAATTTGAGAGT
7767761 TTGAGAGAATTTTGGAAGGAATTTGAGAG
1 TTGAGAGAATTTTGGAAGGAATTTGAGAG
7767790 AATTTTTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAATTTGAGAGT
Found at i:7767785 original size:22 final size:22
Alignment explanation
Indices: 7767760--7767830 Score: 108
Period size: 22 Copynumber: 3.2 Consensus size: 22
7767750 AATTTGAGAG
*
7767760 TTTGAGAGAATTTTGGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
7767782 TTTGAGAGAATTTTTGAACGGAA
1 TTTGAGAGAATTTTTGAA-GGAA
7767805 -TTGAGAGAATTTTTGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
*
7767826 ATTGA
1 TTTGA
7767831 TATTGAATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
21 4 0.09
22 38 0.83
23 4 0.09
ACGTcount: A:0.37, C:0.01, G:0.28, T:0.34
Consensus pattern (22 bp):
TTTGAGAGAATTTTTGAAGGAA
Found at i:7768328 original size:22 final size:22
Alignment explanation
Indices: 7768299--7768344 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
7768289 TAATAGTGTT
7768299 AATAATTAAA-TTTAAAAAATA
1 AATAATTAAATTTTAAAAAATA
*
7768320 AATAGATTAAATTTTTAAAAATA
1 AATA-ATTAAATTTTAAAAAATA
7768343 AA
1 AA
7768345 AGTAAGAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.18
22 6 0.27
23 12 0.55
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
AATAATTAAATTTTAAAAAATA
Found at i:7783991 original size:24 final size:23
Alignment explanation
Indices: 7783955--7783999 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
7783945 ATATACATGC
*
7783955 GCATATTTTATATATAATATATCT
1 GCATATTTAATATAT-ATATATCT
7783979 GCATATTTAATATATATATAT
1 GCATATTTAATATATATATAT
7784000 TTTAAGCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (23 bp):
GCATATTTAATATATATATATCT
Found at i:7784996 original size:40 final size:39
Alignment explanation
Indices: 7784922--7785041 Score: 102
Period size: 40 Copynumber: 2.9 Consensus size: 39
7784912 AAACTGTTCA
* *
7784922 TCCACGTCAGCAAATCGCGTCCT--CGTAGGAGCGATTTGTG
1 TCCACGTAAGCAAATCGCG--CTGACGT-GGAGCGATTTCTG
7784962 TCCACGTAAGCAAATCGCGCTGACGTGGATGCGATGTTCTG
1 TCCACGTAAGCAAATCGCGCTGACGTGGA-GCGAT-TTCTG
* **
7785003 -ACACGTACCCTAACATCGCGCTGACGTGGACGCGATTTC
1 TCCACGTAAGC-AA-ATCGCGCTGACGTGGA-GCGATTTC
7785042 GCGAAAAATG
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
38 2 0.03
39 3 0.04
40 33 0.49
41 9 0.13
42 21 0.31
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (39 bp):
TCCACGTAAGCAAATCGCGCTGACGTGGAGCGATTTCTG
Found at i:7791428 original size:44 final size:44
Alignment explanation
Indices: 7791375--7792404 Score: 926
Period size: 44 Copynumber: 23.3 Consensus size: 44
7791365 AAGAGCAGCA
* * * *
7791375 GATCTTGTCTTCATGTATTGGCTTGAAGTAGATCAAAGATAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
*** * *** **
7791419 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAGCG
* * *
7791464 GATCTTGTCTTCATGTATTGACAAGGAGTAGATC-AGAGATAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGCG
* *
7791508 AATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGCG
* * **
7791552 GATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAATG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
* *
7791596 GATCTTGTCTTCATGTATTGACATGAAGTGGATC-AGAGATAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGCG
* * *** * *** * **
7791640 AATCTTGTTTTCCCATACTGGTGGTGAAGTAGATCGAAGGTAATG
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAGCG
* **
7791685 GATCTTGTCTTCATGTATTGACATGGAGTAGATC-AGAGATAGTA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGCG
* * *
7791729 GATCTTGTCTTCATGTATTGACATGAAGTAGAT-TAGAGATATCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGCG
* * * * **
7791773 AATCTTATCTTCCTGTATTAACATGAAGTAGATCGAAGATAATG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
* * * * * *
7791817 GATCTTGTCTTCATGTACTGGCGTGAAGTAGATCGGAGAAAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
* * * * *
7791861 GATCTTATCTTCATGTACT-AGCGTGAAGTAGATCGAAGAAAGCA
1 GATCTTGTCTTCATGTATTGA-CATGAAGTAGATCGAAGATAGCG
* *
7791905 GATCTTGTATTCATGTATTGATATGAAGTAGATCGAAGATAGCG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
*** * *** *
7791949 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT-GATG
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAG-CG
*
7791994 GATCTTGTCTTCATGTATTGACATAAAGTAGATCGAAGATAGCG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
*** * *** **
7792038 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAGCG
* **
7792083 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAATG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
7792127 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
*** * *** **
7792171 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAGCG
**
7792216 GATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAATG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGCG
7792260 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
*** * *** **
7792304 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAGCG
*
7792349 GATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGCG
*
7792393 GATCGTGTCTTC
1 GATCTTGTCTTC
7792405 CCATACTAGT
Statistics
Matches: 791, Mismatches: 175, Indels: 40
0.79 0.17 0.04
Matches are distributed among these distances:
43 5 0.01
44 581 0.73
45 204 0.26
46 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (44 bp):
GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
Found at i:7791673 original size:177 final size:177
Alignment explanation
Indices: 7791374--7792315 Score: 864
Period size: 177 Copynumber: 5.3 Consensus size: 177
7791364 AAAGAGCAGC
* * * *** *** *
7791374 AGATCTTGTCTTCATGTATTGGCTTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTG
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA-TT
*** *** ** * * ** *
7791439 GTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA-TTGACAAGGAGTAGATC-AGAG
65 GACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTAGATCGA-AG
** *
7791502 ATAGCAAATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGC
129 ATAGCGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGT
* *
7791551 AGATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTG
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTG
* * * * * *
7791616 ACATGAAGTGGATC-AGAGATAGCAAATCTTGTTTTCCCATACTGGTGGTGAAGTAGATCGAAGG
66 ACATGAAGTAGATCGA-AGATAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTAGATCGAAGA
** *
7791680 TAATGGATCTTGTCTTCATGTATTGACATGGAGTAGATCAGAGATAGT
130 TAGCGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGT
* ** * *
7791728 AGATCTTGTCTTCATGTATTGACATGAAGTAGAT-TAGAGAT-ATCAAATCTTATCTTCCTGTAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAAT-GGATCTTGTCTTCATGTAT
* *** ** *
7791791 TAACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCGGAG
64 TGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTAGATCGAAG
* * * * * * *
7791855 AAAGCAGATCTTATCTTCATGTACT-AGCGTGAAGTAGATC-GAAGAAAGC
129 ATAGCGGATCTTGTCTTCATGTATTGA-CATGAAGTAGATCAG-AGATAGT
* * ** *** *
7791904 AGATCTTGTATTCATGTATTGATATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCCCATACTG
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA-TT
*** ** * * * *
7791969 GTGGTGAAGTAGATCGAAGAT-G-ATGGATCTTGTCTTCATGTA-TTGACATAAAGTAGATCGAA
65 GACATGAAGTAGATCGAAGATAGCA--GATCTTGTCTTCACATACTGGTCGTGAAGTAGATCGAA
*** * *** *
7792031 GATAGCGGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC-GAAGATAAT
128 GATAGCGGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCAG-AGATAGT
* *
7792082 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTG
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTG
* * *
7792147 ACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT
66 ACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTAGATCGAAGAT
** *
7792212 AATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAAT
131 AGCGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGT
* **
7792259 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTC
7792316 CCATACTGGT
Statistics
Matches: 610, Mismatches: 135, Indels: 40
0.78 0.17 0.05
Matches are distributed among these distances:
175 3 0.00
176 132 0.22
177 366 0.60
178 109 0.18
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (177 bp):
AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTG
ACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTAGATCGAAGAT
AGCGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGT
Found at i:7791735 original size:133 final size:133
Alignment explanation
Indices: 7791443--7792389 Score: 1137
Period size: 133 Copynumber: 7.1 Consensus size: 133
7791433 ATACTGGTGG
* *
7791443 TGAAGTAGATC-GAAGATAATGGATCTTGTCTTCATGTATTGACAAGGAGTAGATC-AGAGATAG
1 TGAAGTAGATCAG-AGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAG
* *** * *** *** *
7791506 CAAATCTTGTCTTCATGTA-TTGACATGAAGTAGATC-AGAGATAGCAGATCTTATCTTCATGTA
64 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGA-AGATAATGGATCTTGTCTTCATGTA
7791569 TTGACA
128 TTGACA
* *
7791575 TGAAGTAGATC-GAAGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTGGATC-AGAGATAG
1 TGAAGTAGATCAG-AGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAG
* * *
7791638 CAAATCTTGTTTTCCCATACTGGTGGTGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTAT
64 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTAT
7791703 TGACA
129 TGACA
* * * * *
7791708 TGGAGTAGATCAGAGATAGTAGATCTTGTCTTCATGTATTGACATGAAGTAGAT-TAGAGATATC
1 TGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGC
* * ** ***** *
7791772 AAATCTTATCTTCCTGTA-TTAACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTACT
65 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATT
* *
7791836 GGCG
130 GACA
* * * * *
7791840 TGAAGTAGATCGGAGA-AA-GCAGATCTTATCTTCATGTACT-AGCGTGAAGTAGATCGAAGAAA
1 TGAAGTAGATCAGAGATAATG--GATCTTGTCTTCATGTATTGA-CATGAAGTAGATCGAAGATA
* *** * * * ** ***
7791902 GCAGATCTTGTATTCATGTATTGAT-ATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCCCATA
63 GCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA
* ***
7791966 CTGGTGG
128 -TTGACA
* *
7791973 TGAAGTAGATC-GAAGATGATGGATCTTGTCTTCATGTATTGACATAAAGTAGATCGAAGATAGC
1 TGAAGTAGATCAG-AGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGC
*
7792037 GGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATT
65 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATT
7792102 GACA
130 GACA
* *
7792106 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
1 TGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCA
7792171 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTG
66 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTG
7792236 ACA
131 ACA
*
7792239 TGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
1 TGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCA
7792304 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTG
66 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTG
7792369 ACA
131 ACA
7792372 TGAAGTAGATCAGAGATA
1 TGAAGTAGATCAGAGATA
7792390 GCAGATCGTG
Statistics
Matches: 711, Mismatches: 88, Indels: 31
0.86 0.11 0.04
Matches are distributed among these distances:
131 2 0.00
132 211 0.30
133 460 0.65
134 37 0.05
135 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (133 bp):
TGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCA
GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTG
ACA
Found at i:7792411 original size:89 final size:88
Alignment explanation
Indices: 7791375--7792404 Score: 964
Period size: 89 Copynumber: 11.6 Consensus size: 88
7791365 AAGAGCAGCA
* * * * *** *
7791375 GATCTTGTCTTCATGTATTGGCTTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCATGTA-TTG
***
7791440 TGGTGAAGTAGATCGAAGATAATG
65 ACATGAAGTAGATCGAAGATAATG
* * **
7791464 GATCTTGTCTTCATGTATTGACAAGGAGTAGATC-AGAGATAGCAAATCTTGTCTTCATGTATTG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGCGGATCTTGTCTTCATGTATTG
***
7791528 ACATGAAGTAGATC-AGAGATAGCA
65 ACATGAAGTAGATCGA-AGATAATG
* * **
7791552 GATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCATGTATTGA
* ***
7791617 CATGAAGTGGATC-AGAGATAGCA
66 CATGAAGTAGATCGA-AGATAATG
* * *** * *** * **
7791640 AATCTTGTTTTCCCATACTGGTGGTGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTG
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCATGTATTG
* * *
7791705 ACATGGAGTAGATC-AGAGATAGTA
65 ACATGAAGTAGATCGA-AGATAATG
* * ** * * *
7791729 GATCTTGTCTTCATGTATTGACATGAAGTAGAT-TAGAGATATCAAATCTTATCTTCCTGTATTA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGCGGATCTTGTCTTCATGTATTG
7791793 ACATGAAGTAGATCGAAGATAATG
65 ACATGAAGTAGATCGAAGATAATG
* * * * * * * *
7791817 GATCTTGTCTTCATGTACTGGCGTGAAGTAGATCGGAGAAAGCAGATCTTATCTTCATGTACT-A
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCATGTATTGA
*
7791881 GCGTGAAGTAGATCGAAGA-AA-G
66 -CATGAAGTAGATCGAAGATAATG
* * ***
7791903 CAGATCTTGTATTCATGTATTGATATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCCCATACT
1 --GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCATGTA-T
* *** *
7791968 GGTGGTGAAGTAGATCGAAGATGATG
63 TGACATGAAGTAGATCGAAGATAATG
* *** *
7791994 GATCTTGTCTTCATGTATTGACATAAAGTAGATCGAAGATAGCGGATCTTGTCTTCCCATACTGG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCATGTA-TTG
***
7792059 TGGTGAAGTAGATCGAAGATAATG
65 ACATGAAGTAGATCGAAGATAATG
* **
7792083 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCATGTATTGA
**
7792148 CATGAAGTAGATCGAAGATAGCG
66 CATGAAGTAGATCGAAGATAATG
*** * *** **
7792171 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTG
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCATGTATTG
7792236 ACATGAAGTAGATC-AGAGATAATG
65 ACATGAAGTAGATCGA-AGATAATG
*** *
7792260 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCCCATACTGG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCATGTA-TTG
***
7792325 TGGTGAAGTAGATCGAAGATAATG
65 ACATGAAGTAGATCGAAGATAATG
* *
7792349 GATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGCAGATCGTGTCTTC
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGCGGATCTTGTCTTC
7792405 CCATACTAGT
Statistics
Matches: 791, Mismatches: 131, Indels: 38
0.82 0.14 0.04
Matches are distributed among these distances:
86 1 0.00
87 5 0.01
88 348 0.44
89 434 0.55
90 2 0.00
91 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (88 bp):
GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCATGTATTGA
CATGAAGTAGATCGAAGATAATG
Found at i:7793695 original size:24 final size:23
Alignment explanation
Indices: 7793659--7793703 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
7793649 ATATACATGC
*
7793659 GCATATTTTATATATAATATATAT
1 GCATATTTAATATAT-ATATATAT
7793683 GCATATTTAATATATATATAT
1 GCATATTTAATATATATATAT
7793704 TTTAAGCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (23 bp):
GCATATTTAATATATATATATAT
Found at i:7793703 original size:15 final size:15
Alignment explanation
Indices: 7793667--7793705 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
7793657 GCGCATATTT
*
7793667 TATATATAATATATA
1 TATATTTAATATATA
7793682 TGCATATTTAATATATA
1 T--ATATTTAATATATA
7793699 TATATTT
1 TATATTT
7793706 TAAGCCTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.33
17 14 0.67
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (15 bp):
TATATTTAATATATA
Found at i:7795028 original size:19 final size:19
Alignment explanation
Indices: 7795004--7795095 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
7794994 AATCTTCAGG
*
7795004 GATATGCAATCTTAGTTAT
1 GATATGCAATCTTAGATAT
7795023 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* ** *
7795042 AATATATAATATTAGATAT
1 GATATGCAATCTTAGATAT
7795061 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7795080 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
7795096 AGATAAGATT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 64 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7796856 original size:9 final size:9
Alignment explanation
Indices: 7796842--7796887 Score: 74
Period size: 9 Copynumber: 5.1 Consensus size: 9
7796832 TATAGTTTAA
7796842 TATTCGAAT
1 TATTCGAAT
7796851 TATTCGAAT
1 TATTCGAAT
7796860 TATTCGAAT
1 TATTCGAAT
* *
7796869 CATTCGAGT
1 TATTCGAAT
7796878 TATTCGAAT
1 TATTCGAAT
7796887 T
1 T
7796888 TGAAAACTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7804924 original size:77 final size:77
Alignment explanation
Indices: 7804838--7805023 Score: 354
Period size: 77 Copynumber: 2.4 Consensus size: 77
7804828 CATCGAGGAG
*
7804838 ATAGAAACTGGTGCTTCAACCCACTCCACTGCCCTTCTTCATGTAGTCTCGTTCTAATCCACTAC
1 ATAGAAACTGGTGCTTCAACCCACTCCACTGCCCCTCTTCATGTAGTCTCGTTCTAATCCACTAC
7804903 ATCTTTAGGGGT
66 ATCTTTAGGGGT
*
7804915 ATAGAAACTGGTGCTTCAACCCACTCCACTGCCCCTCTTCATGTAGTCTTGTTCTAATCCACTAC
1 ATAGAAACTGGTGCTTCAACCCACTCCACTGCCCCTCTTCATGTAGTCTCGTTCTAATCCACTAC
7804980 ATCTTTAGGGGT
66 ATCTTTAGGGGT
7804992 ATAGAAACTGGTGCTTCAACCCACTCCACTGC
1 ATAGAAACTGGTGCTTCAACCCACTCCACTGC
7805024 GACATCGGGG
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
77 107 1.00
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.31
Consensus pattern (77 bp):
ATAGAAACTGGTGCTTCAACCCACTCCACTGCCCCTCTTCATGTAGTCTCGTTCTAATCCACTAC
ATCTTTAGGGGT
Found at i:7807155 original size:43 final size:43
Alignment explanation
Indices: 7807098--7807346 Score: 191
Period size: 43 Copynumber: 5.8 Consensus size: 43
7807088 CCAAGGTGCT
* *
7807098 GATGCTGCTCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCC
** * * * ** * *
7807141 GACAGTGTCCGAGGCTCCCGCAC-ATCATAGCACCGA-GCTGCC
1 GATGGTGCCCGAGGCTCCTGCACGACCA-AGGGCCTAGGTTGCC
* * * * *
7807183 GATGATGCCCGAGGCTCCCGCACGACTAAGGGCCTAGGTTACT
1 GATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCC
* * *
7807226 GATGGTGCCCGAGGCTCCTGCATGACCAAGGGCTTAGTTTGCC
1 GATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCC
* * * ** * *
7807269 GATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCACCAAGG-TGTC
1 GATGGTGCCCGAGGCTCCTGCACGA-CCAAGGGCCTAGGTTGCC
* * *
7807311 GATGGTGCCCGAGGTTCCCGCACGACTAAGGGCCTA
1 GATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTA
7807347 TGCTACCGAG
Statistics
Matches: 151, Mismatches: 50, Indels: 11
0.71 0.24 0.05
Matches are distributed among these distances:
42 61 0.40
43 90 0.60
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (43 bp):
GATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCC
Found at i:7807324 original size:128 final size:128
Alignment explanation
Indices: 7807096--7807346 Score: 367
Period size: 128 Copynumber: 2.0 Consensus size: 128
7807086 CCCCAAGGTG
*
7807096 CTGATGCTGCTCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCG
1 CTGATGCTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCG
*
7807161 CACATCATAGCACCGAGCTGCCGATGATGCCCGAGGCTCCCGCACGACTAAGGGCCTAGGTTA
66 CACATCATAGCACCAAGCTGCCGATGATGCCCGAGGCTCCCGCACGACTAAGGGCCTAGGTTA
* * * * ** * *
7807224 CTGATGGTGCCCGAGGCTCCTGCATGACCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCCTG
1 CTGATGCTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCG
* * * * *
7807289 CACATCCTAGCACCAAGGTGTCGATGGTGCCCGAGGTTCCCGCACGACTAAGGGCCTA
66 CACATCATAGCACCAAGCTGCCGATGATGCCCGAGGCTCCCGCACGACTAAGGGCCTA
7807347 TGCTACCGAG
Statistics
Matches: 108, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
128 108 1.00
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (128 bp):
CTGATGCTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCG
CACATCATAGCACCAAGCTGCCGATGATGCCCGAGGCTCCCGCACGACTAAGGGCCTAGGTTA
Found at i:7807418 original size:24 final size:24
Alignment explanation
Indices: 7807356--7807429 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
7807346 ATGCTACCGA
*
7807356 GACGGATCGCCGGAACACCGACGG
1 GACGGATCGCCGGAGCACCGACGG
*
7807380 GACGGTTCGCCGGAGCACC-ACTGG
1 GACGGATCGCCGGAGCACCGAC-GG
* * *
7807404 GACGGATCACCGGAGTACCGCCGG
1 GACGGATCGCCGGAGCACCGACGG
7807428 GA
1 GA
7807430 ACCTAACCGG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
23 2 0.05
24 39 0.93
25 1 0.02
ACGTcount: A:0.22, C:0.32, G:0.38, T:0.08
Consensus pattern (24 bp):
GACGGATCGCCGGAGCACCGACGG
Found at i:7807774 original size:42 final size:41
Alignment explanation
Indices: 7807647--7807915 Score: 220
Period size: 42 Copynumber: 6.4 Consensus size: 41
7807637 TTGGTGCTCA
* * *
7807647 AGGCTCCCGCTCATCCATGCACCAAGGTGCTGATGGTG-CTCG
1 AGGCTCCCGCACAT-CAAGCACCAAGGTGCCGATGGTGTC-CG
* ** * **
7807689 AGGCTCCCGCACGACCAAGGGCCTAAGTTGCCGACAGTGTCCG
1 AGGCTCCCGCAC-ATCAAGCACC-AAGGTGCCGATGGTGTCCG
*
7807732 AGGCTCCCGCACATCATAGCACCGAGGTGCCGATGGTGTCCG
1 AGGCTCCCGCACATCA-AGCACCAAGGTGCCGATGGTGTCCG
* * ** * *
7807774 AGGCTTCC-CACAACCAAGGGCCTAGTTTGCCGATGGTGTCCG
1 AGGCTCCCGCAC-ATCAAGCACCAAG-GTGCCGATGGTGTCCG
* *
7807816 ATGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTG-CTCG
1 AGGCTCCCGCACAT-CAAGCACCAAGGTGCCGATGGTGTC-CG
* * *
7807858 AGGCTCCCGCACATCCAAGCATCAAGGTTACCGATGGTGTCTG
1 AGGCTCCCGCACAT-CAAGCACCAAGG-TGCCGATGGTGTCCG
*
7807901 AGGCTCCCACACATC
1 AGGCTCCCGCACATC
7807916 CGAGCCACCA
Statistics
Matches: 180, Mismatches: 36, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
41 10 0.06
42 104 0.58
43 64 0.36
44 2 0.01
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.19
Consensus pattern (41 bp):
AGGCTCCCGCACATCAAGCACCAAGGTGCCGATGGTGTCCG
Found at i:7807825 original size:84 final size:85
Alignment explanation
Indices: 7807647--7807876 Score: 324
Period size: 84 Copynumber: 2.7 Consensus size: 85
7807637 TTGGTGCTCA
* * *
7807647 AGGCTCCCGCTCATCCATGCACCAAGGTGCTGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCC
1 AGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACAACCAAGGGCC
7807712 TAAGTTGCCGACAGTGTCCG
66 TAAGTTGCCGACAGTGTCCG
* *
7807732 AGGCTCCCGCACAT-CATAGCACCGAGGTGCCGATGGTG-TCCGAGGCTTCC-CACAACCAAGGG
1 AGGCTCCCGCACATCCAT-GCACCAAGGTGCCGATGGTGCT-CGAGGCTCCCGCACAACCAAGGG
**
7807794 CCT-AGTTTGCCGATGGTGTCCG
64 CCTAAG-TTGCCGACAGTGTCCG
* *
7807816 ATGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAG
1 AGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACAACCAAG
7807877 CATCAAGGTT
Statistics
Matches: 128, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
83 2 0.02
84 73 0.57
85 53 0.41
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.18
Consensus pattern (85 bp):
AGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACAACCAAGGGCC
TAAGTTGCCGACAGTGTCCG
Found at i:7807914 original size:85 final size:84
Alignment explanation
Indices: 7807647--7807916 Score: 298
Period size: 85 Copynumber: 3.2 Consensus size: 84
7807637 TTGGTGCTCA
* * *
7807647 AGGCTCCCGCTCATCCATGCACCAAGGTGCTGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCC
1 AGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCAC-ACCAA--GCA
**
7807712 T-AA-GTTGCCGACAGTGTCCG
63 TCAAGGTTGCCGATGGTGTCCG
* * **
7807732 AGGCTCCCGCACAT-CATAGCACCGAGGTGCCGATGGTG-TCCGAGGCTTCC-CACAACCAAGGG
1 AGGCTCCCGCACATCCAT-GCACCAAGGTGCCGATGGTGCT-CGAGGCTCCCGCAC-ACCAAGCA
* * *
7807794 CCTAGTTTGCCGATGGTGTCCG
63 TCAAGGTTGCCGATGGTGTCCG
*
7807816 ATGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGCATC
1 AGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACA-CCAAGCATC
* *
7807881 AAGGTTACCGATGGTGTCTG
65 AAGGTTGCCGATGGTGTCCG
*
7807901 AGGCTCCCACACATCC
1 AGGCTCCCGCACATCC
7807917 GAGCCACCAA
Statistics
Matches: 153, Mismatches: 24, Indels: 16
0.79 0.12 0.08
Matches are distributed among these distances:
82 1 0.01
83 1 0.01
84 68 0.44
85 83 0.54
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (84 bp):
AGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACACCAAGCATCA
AGGTTGCCGATGGTGTCCG
Found at i:7819109 original size:42 final size:43
Alignment explanation
Indices: 7818957--7819134 Score: 173
Period size: 42 Copynumber: 4.2 Consensus size: 43
7818947 TCTTCTTTAG
* *
7818957 CCCGCACATCCCAGACACCAAGGTGTCGATGGGTGCCCGAGGCT
1 CCCGCACATCCCAGACACCAAGGGGCCGAT-GGTGCCCGAGGCT
* * * *
7819001 CCCGCACATCCGAGTCACCAAGGTGCCGATGGTACCCGAGGCT
1 CCCGCACATCCCAGACACCAAGGGGCCGATGGTGCCCGAGGCT
* * ** * * * *
7819044 CCAGCACGA-CCAAG-GGCCGAGGGGCCGGTGGTGTCTGAGGCT
1 CCCGCAC-ATCCCAGACACCAAGGGGCCGATGGTGCCCGAGGCT
* *
7819086 CCCGCACATCCCAG-CACCTAGGGGCCGATGGTGGCCGAGGCT
1 CCCGCACATCCCAGACACCAAGGGGCCGATGGTGCCCGAGGCT
7819128 CCCGCAC
1 CCCGCAC
7819135 GACCAAGGGC
Statistics
Matches: 110, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
41 1 0.01
42 59 0.54
43 22 0.20
44 28 0.25
ACGTcount: A:0.19, C:0.37, G:0.33, T:0.12
Consensus pattern (43 bp):
CCCGCACATCCCAGACACCAAGGGGCCGATGGTGCCCGAGGCT
Found at i:7819167 original size:43 final size:43
Alignment explanation
Indices: 7818983--7819788 Score: 711
Period size: 43 Copynumber: 18.9 Consensus size: 43
7818973 ACCAAGGTGT
* ** *
7818983 CGATGGGTGCCCGAGGCTCCCGCAC-ATCCGAGTCACCAAGG-TGC
1 CGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCTAGGTTGC
* * * *
7819027 CGATGGTACCCGAGGCTCCAGCACGACCAAGGGCCGAGG-GGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * ** *
7819069 CGGTGGTGTCTGAGGCTCCCGCAC-ATCCCAGCACCTAGG-GGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* **
7819111 CGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTATTTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
7819154 CGATGGTGCCCGAGGCTCCCGCATGACTAAGGGCTTAGTTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* ** *
7819197 CGATGGTGCCCGAGCCTCTTGCACGACCAAGGACCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
*
7819240 CGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * * * ** * *
7819283 CGACAGTGTCCGAGGCTCTCGCAC-ATCATAGCACCGA-GCTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGGTTGC
* *
7819325 CGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * ** *
7819368 CGATGGTGTCCGAGGCTCCCGTAC-ATCCTAGCACCTAGG-GGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* **
7819410 CGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTATTTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
7819453 CGATGGTCCCCGAGGCTCCCGCACGACCGAGGGCTTAGTTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
7819496 CGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * ** *
7819539 CGATAGTGCGCGAGGTTCTCGCAC-ATCCAAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* * *
7819581 CGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCTAAGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * * ** * * *
7819624 CGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCACC-AAGCTGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGGTTGC
*
7819666 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * *
7819709 CGATAGTGCCCGAGGCTCCTGCATGACCAAGGGCTTAGTTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
7819752 CGATGGTGTCCGGGGGTCCCGCACGACCAAAGGCCTA
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
7819789 TGCTACCGGG
Statistics
Matches: 607, Mismatches: 139, Indels: 33
0.78 0.18 0.04
Matches are distributed among these distances:
41 1 0.00
42 196 0.32
43 405 0.67
44 5 0.01
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (43 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
Found at i:7819173 original size:85 final size:84
Alignment explanation
Indices: 7818983--7819788 Score: 670
Period size: 85 Copynumber: 9.4 Consensus size: 84
7818973 ACCAAGGTGT
* ** * * *
7818983 CGATGGGTGCCCGAGGCTCCCGCAC-ATCCGAGTCACCAAGGTGCCGATGGTACCCGAGGCTCCA
1 CGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCTAGGTGCCGATGGTGCCCGAGGCTCCC
* * **
7819047 GCACGACCAAGGGCCGAGGGGC
63 GCACGACCAAGGACCTAGTTGC
* * * * ** * *
7819069 CGGTGGTGTCTGAGGCTCCCGCAC-ATCCCAGCACCTAGGGGCCGATGGTGGCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGC
* *
7819133 ACGACCAAGGGCCTATTTTGC
65 ACGACCAAGGACCTA-GTTGC
* * * * * **
7819154 CGATGGTGCCCGAGGCTCCCGCATGACTAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GTGCCGATGGTGCCCGAGGCTCCCGC
7819219 ACGACCAAGGACCTAGGTTGC
65 ACGACCAAGGACCTA-GTTGC
* ** * *
7819240 CGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCTCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGC
* * * *
7819305 AC-ATCATAGCACCGAGCTGC
65 ACGACCA-AGGACCTAGTTGC
* * * *
7819325 CGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GTGCCGATGGTGCCCGAGGCTCCCGC
* * **
7819390 AC-ATCCTAGCACCTAGGGGC
65 ACGA-CCAAGGACCTAGTTGC
* ** *
7819410 CGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTCCCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA-GGTGCCGATGGTGCCCGAGGCTCCCGC
* * *
7819475 ACGACCGAGGGCTTAGTTTGC
65 ACGACCAAGGACCTAG-TTGC
* * * * * *
7819496 CGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATAGTGCGCGAGGTTCTCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGC
* * *
7819561 AC-ATCCAAGCACCAAGGTGC
65 ACGA-CCAAGGACCTAGTTGC
* * * ** *
7819581 CGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCTAAGTTGCCGACAGTGTCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT-AGGTGCCGATGGTGCCCGAGGCTCCCGC
* * * * *
7819646 AC-ATCATAGCACCAAGCTGT
65 ACGACCA-AGGACCTAGTTGC
* * *
7819666 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATAGTGCCCGAGGCTCCTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT-AGGTGCCGATGGTGCCCGAGGCTCCCGC
* * *
7819731 ATGACCAAGGGCTTAGTTTGC
65 ACGACCAAGGACCTAG-TTGC
* * * *
7819752 CGATGGTGTCCGGGGGTCCCGCACGACCAAAGGCCTA
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
7819789 TGCTACCGGG
Statistics
Matches: 589, Mismatches: 115, Indels: 33
0.80 0.16 0.04
Matches are distributed among these distances:
84 44 0.07
85 335 0.57
86 210 0.36
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (84 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCA
CGACCAAGGACCTAGTTGC
Found at i:7819454 original size:256 final size:256
Alignment explanation
Indices: 7819152--7819788 Score: 868
Period size: 256 Copynumber: 2.5 Consensus size: 256
7819142 GGCCTATTTT
* * * * * *
7819152 GCCGATGGTGCCCGAGGCTCCCGCATGACTAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAATTTGCCGATGGTGCCCGAGGCTCCT
* * *
7819217 GCACGACCAAGGACCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
66 GCACGACCAAGGGCTTAGTTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
*
7819282 CCGACAGTGTC-CGAGGCTCTCGCACAT-CATAGCACCGAGCTGCCGATGGTGCCCGAGGCTCCC
131 CCGACAGTG-CGCGAGGCTCTCGCACATCCA-AGCACCAAGCTGCCGATGGTGCCCGAGGCTCCC
** * * * *
7819345 GCACGACCAAAGGCCT-AGTTTGCCGATGGTGTCCGAGGCTCCCGTACATCCTAGCACCTAGGG
194 GCACGACCAAAGGCCTAAG-TTGCCGACAGTGTCCGAGGCTCCCGCACATCATAGCACCAAGCG
* * * *
7819408 GCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTCCCCGAGGCTCCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAATTTGCCGATGGTGCCCGAGGCTCCT
* * * *
7819473 GCACGACCGAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTG
66 GCACGACCAAGGGCTTAGTTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * * * *
7819538 CCGATAGTGCGCGAGGTTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGT
131 CCGACAGTGCGCGAGGCTCTCGCACATCCAAGCACCAAGCTGCCGATGGTGCCCGAGGCTCCCGC
* *
7819603 ACGACCAAGGGCCTAAGTTGCCGACAGTGTCCGAGGCTCCCGCACATCATAGCACCAAGCT
196 ACGACCAAAGGCCTAAGTTGCCGACAGTGTCCGAGGCTCCCGCACATCATAGCACCAAGCG
* * *
7819664 GTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAAGTTGCCGATAGTGCCCGAGGCTCCT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAATTTGCCGATGGTGCCCGAGGCTCCT
* * * *
7819729 GCATGACCAAGGGCTTAGTTTGCCGATGGTG-TCCGGGGGTCCCGCACGACCAAAGGCCTA
66 GCACGACCAAGGGCTTAGTTTGCCGATGGTGCT-CGAGGCTCCCGCACGACCAAGGGCCTA
7819789 TGCTACCGGG
Statistics
Matches: 332, Mismatches: 45, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
255 1 0.00
256 327 0.98
257 4 0.01
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (256 bp):
GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAATTTGCCGATGGTGCCCGAGGCTCCT
GCACGACCAAGGGCTTAGTTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
CCGACAGTGCGCGAGGCTCTCGCACATCCAAGCACCAAGCTGCCGATGGTGCCCGAGGCTCCCGC
ACGACCAAAGGCCTAAGTTGCCGACAGTGTCCGAGGCTCCCGCACATCATAGCACCAAGCG
Found at i:7819535 original size:299 final size:299
Alignment explanation
Indices: 7818993--7819562 Score: 899
Period size: 299 Copynumber: 1.9 Consensus size: 299
7818983 CGATGGGTGC
* * *
7818993 CCGAGGCTCCCGCACATCCGAGTCACCAAGGTGCCGATGGTACCCGAGGCTCCAGCACGACCAAG
1 CCGAGGCTCCCGCACATCAGAGTCACCAAGCTGCCGATGGTACCCGAGGCTCCAGCACGACCAAA
* *
7819058 GGCCGAGGGGCCGGTGGTGTCTGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGTGGCCG
66 GGCCGAGGGGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGTGGCCG
* * *
7819123 AGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCATGACTAAGGGC
131 AGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTCCCCGAGGCTCCCGCACGACCAAGGGC
* * *
7819188 TTAGTTTGCCGATGGTGCCCGAGCCTCTTGCACGACCAAGGACCTAGGTTGCCGATGGTGCTCGA
196 TTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGACCTAGGTTGCCGATAGTGCGCGA
7819253 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGT
261 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGT
* * * * *
7819292 CCGAGGCTCTCGCACATCATAG-CACCGAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAA
1 CCGAGGCTCCCGCACATCAGAGTCACCAAGCTGCCGATGGTACCCGAGGCTCCAGCACGACCAAA
* ** * *
7819356 GGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGTACATCCTAGCACCTAGGGGCCGATGGTGGCC
66 GGCCGAG-GGGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGTGGCC
*
7819421 GAGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTCCCCGAGGCTCCCGCACGACCGAGGG
130 GAGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTCCCCGAGGCTCCCGCACGACCAAGGG
*
7819486 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATAGTGCGCG
195 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGACCTAGGTTGCCGATAGTGCGCG
* *
7819551 AGGTTCTCGCAC
260 AGGCTCCCGCAC
7819563 ATCCAAGCAC
Statistics
Matches: 245, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
298 43 0.18
299 202 0.82
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (299 bp):
CCGAGGCTCCCGCACATCAGAGTCACCAAGCTGCCGATGGTACCCGAGGCTCCAGCACGACCAAA
GGCCGAGGGGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGTGGCCG
AGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTCCCCGAGGCTCCCGCACGACCAAGGGC
TTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGACCTAGGTTGCCGATAGTGCGCGA
GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGT
Found at i:7819865 original size:24 final size:24
Alignment explanation
Indices: 7819794--7819867 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
7819784 GCCTATGCTA
*
7819794 CCGGGACGGTTCGCCGGAGCACCA
1 CCGGGACGGTTCGCCGGAGCACCG
*
7819818 ACGGGACGGTTCGCCGGAGCACCG
1 CCGGGACGGTTCGCCGGAGCACCG
* *
7819842 CCGGGACGGATCGTCGGAGCACCG
1 CCGGGACGGTTCGCCGGAGCACCG
7819866 CC
1 CC
7819868 AGGAACCTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.16, C:0.36, G:0.39, T:0.08
Consensus pattern (24 bp):
CCGGGACGGTTCGCCGGAGCACCG
Found at i:7834941 original size:11 final size:11
Alignment explanation
Indices: 7834922--7834959 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7834912 TAATAACATG
7834922 AAAAAATTATT
1 AAAAAATTATT
*
7834933 AAAATATTATT
1 AAAAAATTATT
*
7834944 AAATAATT-TT
1 AAAAAATTATT
7834954 AAAAAA
1 AAAAAA
7834960 AAAAACCATG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
10 7 0.30
11 16 0.70
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
AAAAAATTATT
Found at i:7840357 original size:40 final size:40
Alignment explanation
Indices: 7840279--7840511 Score: 324
Period size: 40 Copynumber: 5.8 Consensus size: 40
7840269 GCTTCTTTTG
** * *
7840279 TCTGCTCCACTACAACTTCAAGGAGATAAGACTGGATGCGA
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGACTTGATGCGA
7840320 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
*
7840360 TCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * *
7840400 TTTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGATGC-GA
*
7840442 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* *
7840482 TCTGCTTCATTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
7840512 TCGGTTTCTT
Statistics
Matches: 173, Mismatches: 15, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.68
41 20 0.12
42 33 0.19
43 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:7840482 original size:82 final size:81
Alignment explanation
Indices: 7840277--7840513 Score: 334
Period size: 82 Copynumber: 2.9 Consensus size: 81
7840267 TGGCTTCTTT
** * *
7840277 TGTCTGCTCCACTACAACTTCAAGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGG
1 TGTCTGCTCCACTACTGCTT-AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGG
7840342 AGATAAGA-CTTGATGC
65 AGATAAGATCTTGATGC
* *
7840358 -GATCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGCGATTTGCTCCACTACTGCTTAGGG
1 TG-TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGG
* *
7840422 AGATAAGATCTGTGGTTC
65 AGATAAGATCT-TGATGC
* * *
7840440 TGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCGATCTGCTTCATTACTGCTTAGGGA
1 TGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGA
7840505 GATAAGATC
66 GATAAGATC
7840514 GGTTTCTTTC
Statistics
Matches: 139, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
80 49 0.35
81 18 0.13
82 71 0.51
83 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (81 bp):
TGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGA
GATAAGATCTTGATGC
Found at i:7840617 original size:50 final size:50
Alignment explanation
Indices: 7840548--7841276 Score: 324
Period size: 50 Copynumber: 14.6 Consensus size: 50
7840538 ATCGGGGAAC
* * **
7840548 AAGATTCGCCATTGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * * ** ** * *
7840598 AAGATTCGTCGTTGCAGCTTCAATCTTTTAAATTGCAATACCAGGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* ** * *
7840648 AAGATTCGCCGTCGTAGCTTTAATCTGCTCCATTTTACTGCCAGAGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * * ** ** ** *
7840698 GAGATTCGCCGTTGTGGCTTTAATATTTTTAATTGCAATG-TTGAGGAA-C
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAG-GGAAGT
* * * * ** *
7840747 AAGATTC-CCATTGTGGCTTTAATCTGCTCCACTACACCGCCATGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * ** ** * * * *
7840796 AAGATTCGCCGTTG-CGACTTCAATCTTTTAAATTGTAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTAG-CTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * **
7840846 AAGATTCGCCTTTGTAGCTTTAATCTGCTCCACTGC-ATCGCCATAGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAAT-GCCAGGGAAGT
* * ** ** ** **
7840896 AAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTTGCAATTTCAGCAAACC
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCA-TTGCAATGCCAGGGAAGT
* * *** *
7840946 AAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCACCACCAAGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* ** * ** ** * * *
7840996 AAGATTTGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTCGGGGAA-C
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * * * * *** *
7841045 ACGATTCACCGTTGTAGCTTCAATCAGCTCCACTGCACCACCAAGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * * ** ** * * *
7841095 AAGATTCACCGTTG-CGACTTCAATCTTTTTAATTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTAG-CTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * * * * *
7841145 AGGATTCGCCGTCGTAGCTTCAATCTGATCCACTGC-ATCGCTAGGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAAT-GCCAGGGAAGT
* ** * ** ** * * *
7841195 AAGATTCGCCATTGCGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
*
7841245 AAGATTCGCCGTCGTAGCTTTAATCTGCTCCA
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCA
7841277 CTGTACTGCT
Statistics
Matches: 463, Mismatches: 201, Indels: 30
0.67 0.29 0.04
Matches are distributed among these distances:
48 26 0.06
49 53 0.11
50 376 0.81
51 8 0.02
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (50 bp):
AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
Found at i:7841196 original size:299 final size:297
Alignment explanation
Indices: 7840532--7841279 Score: 1032
Period size: 299 Copynumber: 2.5 Consensus size: 297
7840522 TCAAATTGAC
* *
7840532 TGCAATATCGGGGAA-CAAGATTCGCCATTGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCATTGTAGCTTTAATCTGCTCCACTGCATCGCCAGGGAA
* *
7840596 GTAAGATTCGTCGTTGCAGCTTCAATCTTTTAAATTGCAATACCAGGGAAGCAAGATTCGCCGTC
66 GTAAGATTCGCCGTTGCAGCTTCAATCTTTT-AATTGCAATATCAGGGAAGCAAGATTCGCCGTC
* ** ** * * *
7840661 GTAGCTTTAATCTGCTCCATTTTACTGCCAGAGAAGTGAGATTCGCCGTTGTGGCTTTAATATTT
130 GTAGCTTTAATCTGCTCCACTGCACCACCAGAGAAGTAAGATTCGCCGTTGCGGCTTCAATATTT
* * * * * *
7840726 TTAATTGCAATGTTGAGGAACAAGATTCCCATTGTGGCTTTAATCTGCTCCACTACACCGCCATG
195 TTAATTGCAATGTCGAGGAACAAGATTCCCATTGTAGCTTCAATCAGCTCCACTACACCACCAAG
*
7840791 GAAGTAAGATTCGCCGTTGCGACTTCAATCTTTTAAAT
260 GAAGTAAGATTCACCGTTGCGACTTCAATCTTTTAAAT
* * **
7840829 TGTAATGTCGGGGAAGCAAGATTCGCCTTTGTAGCTTTAATCTGCTCCACTGCATCGCCATAGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCATTGTAGCTTTAATCTGCTCCACTGCATCGCCAGGGAA
* * ** *
7840894 GTAAGATTCGCCGTTGTAGCTTCAATCTTTTAATTTGCAATTTCAGCAAACCAAGATTCGCCGTC
66 GTAAGATTCGCCGTTGCAGCTTCAATCTTTTAA-TTGCAATATCAGGGAAGCAAGATTCGCCGTC
* *
7840959 GTAGCTTTAATCTGCTCCACTGCACCACCA-AGGAAGTAAGATTTGCCGTTGCGGCTTCAATCTT
130 GTAGCTTTAATCTGCTCCACTGCACCACCAGA-GAAGTAAGATTCGCCGTTGCGGCTTCAATATT
* * * *
7841023 TTTAATTGCAATGTCGGGGAACACGATTCACCGTTGTAGCTTCAATCAGCTCCACTGCACCACCA
194 TTTAATTGCAATGTCGAGGAACAAGATTC-CCATTGTAGCTTCAATCAGCTCCACTACACCACCA
*
7841088 AGGAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAAT
258 AGGAAGTAAGATTCACCGTTGCGACTTCAATCTTTTAAAT
* * * * * *
7841128 TGCAATGTCGGGGAAGCAGGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCATCGCTAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCATTGTAGCTTTAATCTGCTCCACTGCATCGCCAGGGAA
* * * *
7841193 GTAAGATTCGCCATTGCGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTC
66 GTAAGATTCGCCGTTGCAGCTTCAATC-TTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTC
7841258 GTAGCTTTAATCTGCTCCACTG
130 GTAGCTTTAATCTGCTCCACTG
7841280 TACTGCTAGG
Statistics
Matches: 394, Mismatches: 52, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
297 16 0.04
298 178 0.45
299 194 0.49
300 6 0.02
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (297 bp):
TGCAATGTCGGGGAAGCAAGATTCGCCATTGTAGCTTTAATCTGCTCCACTGCATCGCCAGGGAA
GTAAGATTCGCCGTTGCAGCTTCAATCTTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTCG
TAGCTTTAATCTGCTCCACTGCACCACCAGAGAAGTAAGATTCGCCGTTGCGGCTTCAATATTTT
TAATTGCAATGTCGAGGAACAAGATTCCCATTGTAGCTTCAATCAGCTCCACTACACCACCAAGG
AAGTAAGATTCACCGTTGCGACTTCAATCTTTTAAAT
Found at i:7841288 original size:100 final size:100
Alignment explanation
Indices: 7840532--7841293 Score: 931
Period size: 100 Copynumber: 7.7 Consensus size: 100
7840522 TCAAATTGAC
* * *
7840532 TGCAATATCGGGGAA-CAAGATTCGCCATTGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAA
* * *
7840596 GTAAGATTCGTCGTTGCAGCTTCAATCTTTTAAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
** * * ** * *
7840631 TGCAATACCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCATTTTACTGCCAGAGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAA
* * * *
7840696 GTGAGATTCGCCGTTGTGGCTTTAATATTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * * * *
7840731 TGCAATGTTGAGGAA-CAAGATTC-CCATTGTGGCTTTAATCTGCTCCACTACACCGCCATGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAA
* *
7840794 GTAAGATTCGCCGTTGCGACTTCAATCTTTTAAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * **
7840829 TGTAATGTCGGGGAAGCAAGATTCGCCTTTGTAGCTTTAATCTGCTCCACTGCATCGCCATAGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAA
**
7840894 GTAAGATTCGCCGTTGTAGCTTCAATC-TTTTAATT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAA-T
* * ** * * *
7840929 TGCAATTTCAGCAAACCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCACCACCAAGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAA
*
7840994 GTAAGATTTGCCGTTGCGGCTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * * * *
7841029 TGCAATGTCGGGGAA-CACGATTCACCGTTGTAGCTTCAATCAGCTCCACTGCACCACCAAGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAA
* *
7841093 GTAAGATTCACCGTTGCGACTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * *
7841128 TGCAATGTCGGGGAAGCAGGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCATCGCTAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAA
*
7841193 GTAAGATTCGCCATTGCGGCTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * *
7841228 TGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGTACTGCTAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAA
7841293 G
66 G
7841294 ATAACTTTAT
Statistics
Matches: 564, Mismatches: 93, Indels: 11
0.84 0.14 0.02
Matches are distributed among these distances:
98 72 0.13
99 125 0.22
100 361 0.64
101 6 0.01
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (100 bp):
TGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAA
GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
Found at i:7841292 original size:50 final size:49
Alignment explanation
Indices: 7841138--7841293 Score: 134
Period size: 50 Copynumber: 3.1 Consensus size: 49
7841128 TGCAATGTCG
*
7841138 GGGAAGCAGGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCATCGCTA
1 GGGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCAT-GCTA
* * * ** ** ** * *
7841188 GGGAAGTAAGATTCGCCATTGCGGCTTCAATCTTTTTAATTGCAATG-TCG
1 GGGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGATCCACTGC-ATGCT-A
* * *
7841238 GGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGTACTGCTA
1 GGGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCA-TGCTA
7841288 GGGAAG
1 GGGAAG
7841294 ATAACTTTAT
Statistics
Matches: 77, Mismatches: 25, Indels: 8
0.70 0.23 0.07
Matches are distributed among these distances:
49 2 0.03
50 72 0.94
51 3 0.04
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (49 bp):
GGGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCATGCTA
Found at i:7841638 original size:24 final size:24
Alignment explanation
Indices: 7841594--7841639 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
7841584 TTGCCCCCAC
*
7841594 TGTAATCTTCAAAGTTCAATCCGT
1 TGTAATCTTCAAAGTTAAATCCGT
* *
7841618 TGTAATCTTTAAGGTTAAATCC
1 TGTAATCTTCAAAGTTAAATCC
7841640 ACGGTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.39
Consensus pattern (24 bp):
TGTAATCTTCAAAGTTAAATCCGT
Found at i:7848006 original size:14 final size:13
Alignment explanation
Indices: 7847987--7848037 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
7847977 TATAAATGGG
7847987 AATAAAAAAAGAA
1 AATAAAAAAAGAA
* *
7848000 CAATAAATAAACAA
1 -AATAAAAAAAGAA
7848014 AATAAAAAAA-AGA
1 AATAAAAAAAGA-A
7848027 AATAATAAAAA
1 AATAA-AAAAA
7848038 CAAGTCAGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 1 0.03
13 15 0.47
14 16 0.50
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.12
Consensus pattern (13 bp):
AATAAAAAAAGAA
Found at i:7848037 original size:22 final size:21
Alignment explanation
Indices: 7847987--7848037 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 21
7847977 TATAAATGGG
* * *
7847987 AATAAAAAAAGAACAATAAAT
1 AATAAAAAAAAAAAAAGAAAT
7848008 AA-ACAAAATAAAAAAAAGAAAT
1 AATA-AAAA-AAAAAAAAGAAAT
7848030 AATAAAAA
1 AATAAAAA
7848038 CAAGTCAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
20 1 0.04
21 6 0.25
22 16 0.67
23 1 0.04
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.12
Consensus pattern (21 bp):
AATAAAAAAAAAAAAAGAAAT
Found at i:7851518 original size:26 final size:26
Alignment explanation
Indices: 7851446--7851504 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
7851436 TGTTTTCTTG
*
7851446 AAATTTTACTAGGGCTAAAATAGTCA
1 AAATTTTACTAGGGGTAAAATAGTCA
*
7851472 AAATTTTACTAGGGGTAAAATCGTCA
1 AAATTTTACTAGGGGTAAAATAGTCA
7851498 AAATTTT
1 AAATTTT
7851505 GTTGGAGGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (26 bp):
AAATTTTACTAGGGGTAAAATAGTCA
Found at i:7853171 original size:22 final size:23
Alignment explanation
Indices: 7853128--7853171 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
7853118 TATGTTGATT
7853128 AAGGTTAAAAAAATAAATAACAA
1 AAGGTTAAAAAAATAAATAACAA
7853151 AAGGTTAAAAAAATAAA-AACA
1 AAGGTTAAAAAAATAAATAACA
7853172 TCAAAATATC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.70, C:0.05, G:0.09, T:0.16
Consensus pattern (23 bp):
AAGGTTAAAAAAATAAATAACAA
Done.