Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 29 of 230
Found at i:7853914 original size:6 final size:7
Alignment explanation
Indices: 7853882--7853913 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
7853872 TTTAATTAAT
*
7853882 TTTTTGG
1 TTTTTGA
7853889 TTTTTGA
1 TTTTTGA
7853896 TTTTTGA
1 TTTTTGA
7853903 TTTTTGA
1 TTTTTGA
7853910 TTTT
1 TTTT
7853914 GTATTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.09, C:0.00, G:0.16, T:0.75
Consensus pattern (7 bp):
TTTTTGA
Found at i:7856376 original size:33 final size:33
Alignment explanation
Indices: 7856335--7856403 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
7856325 GTGTTTAAGG
7856335 GTGAATTTGGATGGGCGGTGCATTTAACTGTGA
1 GTGAATTTGGATGGGCGGTGCATTTAACTGTGA
* *
7856368 GTGAATTTGGATGGGCGGTGCGTTTATCTGTGA
1 GTGAATTTGGATGGGCGGTGCATTTAACTGTGA
7856401 GTG
1 GTG
7856404 TAAAAATAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.17, C:0.09, G:0.39, T:0.35
Consensus pattern (33 bp):
GTGAATTTGGATGGGCGGTGCATTTAACTGTGA
Found at i:7864521 original size:25 final size:25
Alignment explanation
Indices: 7864492--7864539 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
7864482 TTTGCTATTC
*
7864492 ATATACACGCATATTTTTATATACA
1 ATATACACGCATATTTTAATATACA
***
7864517 ATATATGTGCATATTTTAATATA
1 ATATACACGCATATTTTAATATA
7864540 TACTTTTAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.40, C:0.10, G:0.06, T:0.44
Consensus pattern (25 bp):
ATATACACGCATATTTTAATATACA
Found at i:7864662 original size:30 final size:28
Alignment explanation
Indices: 7864638--7864694 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
7864628 ATATACTTAC
*
7864638 ACACTTTTTTATTTTTGTAAATATATACA
1 ACACATTTTTA-TTTTGTAAATATATACA
*
7864667 TATACATTTTTATTTTGTAAATATATAC
1 -ACACATTTTTATTTTGTAAATATATAC
7864695 TGGTACATGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.53
Consensus pattern (28 bp):
ACACATTTTTATTTTGTAAATATATACA
Found at i:7867579 original size:31 final size:31
Alignment explanation
Indices: 7867534--7867602 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
7867524 TAACAATTTG
*
7867534 GTCACTTAACTATTCAAAAGTTTTCATTTAA
1 GTCACTGAACTATTCAAAAGTTTTCATTTAA
* *
7867565 GTCACTGAATTATTCAAAAGTTTTTATTTAA
1 GTCACTGAACTATTCAAAAGTTTTCATTTAA
7867596 GTCACTG
1 GTCACTG
7867603 GGCAGTTAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.42
Consensus pattern (31 bp):
GTCACTGAACTATTCAAAAGTTTTCATTTAA
Found at i:7872342 original size:18 final size:19
Alignment explanation
Indices: 7872314--7872350 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
7872304 AAAAAAAGTA
*
7872314 AAATAAAATAAGATAAAAC
1 AAATAAAATAAGAGAAAAC
7872333 AAAT-AAATAAGAGAAAAC
1 AAATAAAATAAGAGAAAAC
7872351 GAAGAAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.73, C:0.05, G:0.08, T:0.14
Consensus pattern (19 bp):
AAATAAAATAAGAGAAAAC
Found at i:7876116 original size:21 final size:20
Alignment explanation
Indices: 7876092--7876152 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
7876082 AGATGTCAGT
7876092 GATACAAAGGATGATGATGAA
1 GATA-AAAGGATGATGATGAA
* *
7876113 GATAAAGAGGATGATAATGCA
1 GATAAA-AGGATGATGATGAA
*
7876134 GATGAAAAAGATGATGATG
1 GAT-AAAAGGATGATGATG
7876153 GAGCTGATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.06
21 29 0.85
22 3 0.09
ACGTcount: A:0.48, C:0.03, G:0.30, T:0.20
Consensus pattern (20 bp):
GATAAAAGGATGATGATGAA
Found at i:7892172 original size:19 final size:16
Alignment explanation
Indices: 7892135--7892182 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 16
7892125 AAAACTATAG
7892135 AAAATTATAAAATCAA
1 AAAATTATAAAATCAA
7892151 AAAATATATAAAAGTGCAA
1 AAAAT-TATAAAA-T-CAA
7892170 AAAAGTTATAAAA
1 AAAA-TTATAAAA
7892183 ATGATTATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 5 0.18
17 7 0.25
18 1 0.04
19 14 0.50
20 1 0.04
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.23
Consensus pattern (16 bp):
AAAATTATAAAATCAA
Found at i:7892437 original size:21 final size:20
Alignment explanation
Indices: 7892367--7892456 Score: 63
Period size: 21 Copynumber: 4.0 Consensus size: 20
7892357 TAAATGACTC
* *
7892367 AAAAATCATATAAATTGTAAA
1 AAAAAT-ATAAAAATTTTAAA
7892388 AAAAATATTACAATAATTTTTTAAAA
1 AAAAATA-TA-AA-AA--TTTT-AAA
7892414 AAAAATATGAAAAATTTTAAA
1 AAAAATAT-AAAAATTTTAAA
* *
7892435 AAACATATAAAATTATTTAAA
1 AAAAATATAAAAAT-TTTAAA
7892456 A
1 A
7892457 TATTACTAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
20 6 0.11
21 25 0.44
22 5 0.09
23 2 0.04
24 2 0.04
25 6 0.11
26 11 0.19
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.32
Consensus pattern (20 bp):
AAAAATATAAAAATTTTAAA
Found at i:7892437 original size:24 final size:26
Alignment explanation
Indices: 7892385--7892437 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
7892375 TATAAATTGT
* **
7892385 AAAAAAAATATTACAATAATTTTTTA
1 AAAAAAAATATGACAATAATTTTAAA
7892411 AAAAAAAATATGA-AA-AATTTTAAA
1 AAAAAAAATATGACAATAATTTTAAA
7892435 AAA
1 AAA
7892438 CATATAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 10 0.42
25 2 0.08
26 12 0.50
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (26 bp):
AAAAAAAATATGACAATAATTTTAAA
Found at i:7892839 original size:20 final size:20
Alignment explanation
Indices: 7892816--7892858 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7892806 ATATACTTAC
* * *
7892816 TTTTTTATTATAATTTTTAA
1 TTTTTTATAAAAATTTTAAA
7892836 TTTTTTATAAAAATTTTAAA
1 TTTTTTATAAAAATTTTAAA
7892856 TTT
1 TTT
7892859 AATTAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTTTATAAAAATTTTAAA
Found at i:7892852 original size:19 final size:20
Alignment explanation
Indices: 7892816--7892854 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
7892806 ATATACTTAC
* *
7892816 TTTTTTATTATAATTTTTAA
1 TTTTTTATTAAAAATTTTAA
7892836 TTTTTTA-TAAAAATTTTAA
1 TTTTTTATTAAAAATTTTAA
7892855 ATTTAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTTTATTAAAAATTTTAA
Found at i:7892963 original size:9 final size:9
Alignment explanation
Indices: 7892906--7893041 Score: 56
Period size: 9 Copynumber: 15.3 Consensus size: 9
7892896 TTTTTAAATT
7892906 TTTTTCATAA
1 TTTTT-ATAA
*
7892916 TTTTT-TCA
1 TTTTTATAA
*
7892924 TTTTCT-TAT
1 TTTT-TATAA
*
7892933 TTTTTGTAA
1 TTTTTATAA
**
7892942 TTCATAT-A
1 TTTTTATAA
7892950 TTTTTATAA
1 TTTTTATAA
7892959 TTTTTAT-A
1 TTTTTATAA
*
7892967 -TTTTA-AT
1 TTTTTATAA
*
7892974 TTTTTATAT
1 TTTTTATAA
* *
7892983 TCTTTTGTAC
1 T-TTTTATAA
7892993 TTTTCTAT-A
1 TTTT-TATAA
7893002 TTTTTATAAAA
1 TTTTTAT--AA
7893013 TTTTTA-ATA
1 TTTTTATA-A
7893022 TTTTTAT-A
1 TTTTTATAA
*
7893030 TTTTCATAA
1 TTTTTATAA
7893039 TTT
1 TTT
7893042 ACATATTTTC
Statistics
Matches: 97, Mismatches: 15, Indels: 29
0.69 0.11 0.21
Matches are distributed among these distances:
7 5 0.05
8 30 0.31
9 41 0.42
10 14 0.14
11 7 0.07
ACGTcount: A:0.26, C:0.06, G:0.01, T:0.67
Consensus pattern (9 bp):
TTTTTATAA
Found at i:7893009 original size:8 final size:8
Alignment explanation
Indices: 7892946--7893064 Score: 73
Period size: 8 Copynumber: 14.0 Consensus size: 8
7892936 TTGTAATTCA
7892946 TATATTTT
1 TATATTTT
7892954 TATAATTTT
1 TAT-ATTTT
7892963 TATATTTT
1 TATATTTT
*
7892971 AAT-TTTT
1 TATATTTT
7892978 TATATTCTTT
1 TATA-T-TTT
*
7892988 TGTACTTTT
1 TATA-TTTT
7892997 CTATATTTT
1 -TATATTTT
7893006 TATAAAATTTT
1 TAT---ATTTT
7893017 TAATATTTT
1 T-ATATTTT
7893026 TATATTTT
1 TATATTTT
* *
7893034 CATAATTTA
1 TAT-ATTTT
*
7893043 CATATTTT
1 TATATTTT
*
7893051 CAT-TTTT
1 TATATTTT
7893058 T-TATTTT
1 TATATTTT
7893065 AAATAATTTT
Statistics
Matches: 91, Mismatches: 9, Indels: 23
0.74 0.07 0.19
Matches are distributed among these distances:
6 1 0.01
7 14 0.15
8 29 0.32
9 29 0.32
10 10 0.11
11 6 0.07
12 2 0.02
ACGTcount: A:0.27, C:0.05, G:0.01, T:0.67
Consensus pattern (8 bp):
TATATTTT
Found at i:7893041 original size:17 final size:17
Alignment explanation
Indices: 7892907--7893074 Score: 57
Period size: 17 Copynumber: 9.8 Consensus size: 17
7892897 TTTTAAATTT
7892907 TTTTCATAATTTTT-TCA
1 TTTTCATAATTTTTAT-A
* * *
7892924 TTTTCTTATTTTTTGTA
1 TTTTCATAATTTTTATA
*
7892941 -ATTCATATATTTTTATAA
1 TTTTCATA-ATTTTTAT-A
* *
7892959 TTTTTAT-ATTTTAAT-
1 TTTTCATAATTTTTATA
* * *
7892974 TTTTTATATTCTTTTGTA
1 TTTTCATAAT-TTTTATA
7892992 CTTTTC-TATATTTTTATAAAA
1 -TTTTCATA-ATTTTTAT---A
*
7893013 TTTTTA-ATATTTTTATA
1 TTTTCATA-ATTTTTATA
**
7893030 TTTTCATAATTTACATA
1 TTTTCATAATTTTTATA
7893047 TTTTCAT--TTTTT-TA
1 TTTTCATAATTTTTATA
*
7893061 TTTTAAATAATTTT
1 TTTT-CATAATTTT
7893075 AATGCTTTTT
Statistics
Matches: 112, Mismatches: 22, Indels: 34
0.67 0.13 0.20
Matches are distributed among these distances:
14 6 0.05
15 12 0.11
16 6 0.05
17 54 0.48
18 10 0.09
19 9 0.08
20 14 0.12
21 1 0.01
ACGTcount: A:0.27, C:0.06, G:0.01, T:0.66
Consensus pattern (17 bp):
TTTTCATAATTTTTATA
Found at i:7893169 original size:28 final size:27
Alignment explanation
Indices: 7893110--7893205 Score: 95
Period size: 27 Copynumber: 3.4 Consensus size: 27
7893100 AATTTTATAA
*
7893110 TTTATATATTTTTTGTAAGCTATAATACTT
1 TTTATAT-TTTTTTGTAA-CTTTAATA-TT
* *
7893140 TTTATATTTTTTTG-CACTTTTATATAT
1 TTTATATTTTTTTGTAACTTTAATAT-T
*
7893167 TTTACAATTTTTTTGTAACTTTAATATT
1 TTTA-TATTTTTTTGTAACTTTAATATT
*
7893195 TTTATAATTTT
1 TTTATATTTTT
7893206 AATATTTTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
26 1 0.02
27 16 0.29
28 15 0.27
29 16 0.29
30 7 0.13
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (27 bp):
TTTATATTTTTTTGTAACTTTAATATT
Found at i:7893178 original size:29 final size:28
Alignment explanation
Indices: 7893118--7893205 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 28
7893108 AATTTATATA
* *
7893118 TTTTTTGTAAGCTATAATACTTTTTA-TAT
1 TTTTTTGTAA-CTTTAATA-TTTTTACAAT
* *
7893147 TTTTTTG-CACTTTTATATATTTTACAAT
1 TTTTTTGTAACTTTAATAT-TTTTACAAT
*
7893175 TTTTTTGTAACTTTAATATTTTTATAAT
1 TTTTTTGTAACTTTAATATTTTTACAAT
7893203 TTT
1 TTT
7893206 AATATTTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 11 0.22
28 21 0.43
29 16 0.33
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.62
Consensus pattern (28 bp):
TTTTTTGTAACTTTAATATTTTTACAAT
Found at i:7893196 original size:17 final size:17
Alignment explanation
Indices: 7893176--7893214 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
7893166 TTTTACAATT
*
7893176 TTTTTGTAACTTTAATA
1 TTTTTATAACTTTAATA
*
7893193 TTTTTATAATTTTAATA
1 TTTTTATAACTTTAATA
7893210 TTTTT
1 TTTTT
7893215 TATGATTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTTTATAACTTTAATA
Found at i:7893204 original size:9 final size:9
Alignment explanation
Indices: 7893192--7893263 Score: 54
Period size: 9 Copynumber: 7.6 Consensus size: 9
7893182 TAACTTTAAT
7893192 ATTTTTATA
1 ATTTTTATA
*
7893201 ATTTTAATA
1 ATTTTTATA
* *
7893210 TTTTTTATG
1 ATTTTTATA
*
7893219 ATTATCTATA
1 ATT-TTTATA
*
7893229 ATTTTTTTATG
1 A--TTTTTATA
*
7893240 ATTTTTATT
1 ATTTTTATA
7893249 ATTTTTAATA
1 ATTTTT-ATA
7893259 ATTTT
1 ATTTT
7893264 AAGTATAAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
9 29 0.60
10 12 0.25
11 5 0.10
12 2 0.04
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (9 bp):
ATTTTTATA
Found at i:7893216 original size:18 final size:18
Alignment explanation
Indices: 7893157--7893265 Score: 71
Period size: 18 Copynumber: 5.8 Consensus size: 18
7893147 TTTTTTGCAC
7893157 TTTTATATATTTTACA-ATTT
1 TTTTATA-ATTTTA-ATA-TT
* *
7893177 TTTTGTAACTTTAATA-T
1 TTTTATAATTTTAATATT
7893194 TTTTATAATTTTAATATT
1 TTTTATAATTTTAATATT
*
7893212 TTTTATGATTATCT-ATAATTT
1 TTTTATAATT-T-TAAT-A-TT
* *
7893233 TTTTATGATTTTTATTATT
1 TTTTAT-AATTTTAATATT
*
7893252 TTTAATAATTTTAA
1 TTTTATAATTTTAA
7893266 GTATAAAACA
Statistics
Matches: 70, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
17 15 0.21
18 17 0.24
19 16 0.23
20 10 0.14
21 10 0.14
22 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (18 bp):
TTTTATAATTTTAATATT
Found at i:7908226 original size:20 final size:20
Alignment explanation
Indices: 7908176--7908227 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 20
7908166 AAATATTTAA
*
7908176 ATATTTTAAAAATATAAAATG
1 ATATTTTAATAA-ATAAAATG
7908197 AGTA--TT-ATAAATAAAATG
1 A-TATTTTAATAAATAAAATG
7908215 ATATTTTAATAAA
1 ATATTTTAATAAA
7908228 GGTTAGTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 9
0.72 0.03 0.25
Matches are distributed among these distances:
17 2 0.08
18 9 0.35
19 5 0.19
20 7 0.27
21 1 0.04
22 2 0.08
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (20 bp):
ATATTTTAATAAATAAAATG
Found at i:7908570 original size:25 final size:25
Alignment explanation
Indices: 7908522--7908574 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
7908512 CTTTTTTTAT
*
7908522 ATTTTTAATTAATCAATAATAAAATA
1 ATTTTTAATTAA-CAATAAGAAAATA
7908548 ATTTTTAATTAA-AATTAAGAAAATA
1 ATTTTTAATTAACAA-TAAGAAAATA
7908573 AT
1 AT
7908575 ATATAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 2 0.08
25 11 0.44
26 12 0.48
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (25 bp):
ATTTTTAATTAACAATAAGAAAATA
Found at i:7908607 original size:14 final size:13
Alignment explanation
Indices: 7908582--7908615 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
7908572 AATATATAAA
7908582 ATATTTTTTATTT
1 ATATTTTTTATTT
*
7908595 TTATTTATTTATTT
1 ATATTT-TTTATTT
7908609 ATATTTT
1 ATATTTT
7908616 ATGTAATACA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
ATATTTTTTATTT
Found at i:7915714 original size:11 final size:11
Alignment explanation
Indices: 7915698--7915743 Score: 92
Period size: 11 Copynumber: 4.2 Consensus size: 11
7915688 TGATTTTGTC
7915698 TTAGTGGAAAA
1 TTAGTGGAAAA
7915709 TTAGTGGAAAA
1 TTAGTGGAAAA
7915720 TTAGTGGAAAA
1 TTAGTGGAAAA
7915731 TTAGTGGAAAA
1 TTAGTGGAAAA
7915742 TT
1 TT
7915744 TACAGTATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.30
Consensus pattern (11 bp):
TTAGTGGAAAA
Found at i:7915989 original size:43 final size:43
Alignment explanation
Indices: 7915937--7916023 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
7915927 GGTTATCTTC
7915937 CTTTTCTTGGTATTTGACCAATGTTTCCTATTTTGCAGGAAGG
1 CTTTTCTTGGTATTTGACCAATGTTTCCTATTTTGCAGGAAGG
7915980 CTTTTCTTGGTATTTGACCAATGTTTCCTATTTTGCAGGAAGG
1 CTTTTCTTGGTATTTGACCAATGTTTCCTATTTTGCAGGAAGG
7916023 C
1 C
7916024 ATCGTGGTAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.18, C:0.17, G:0.21, T:0.44
Consensus pattern (43 bp):
CTTTTCTTGGTATTTGACCAATGTTTCCTATTTTGCAGGAAGG
Found at i:7917346 original size:31 final size:32
Alignment explanation
Indices: 7917311--7917372 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
7917301 ATCTCCCTTG
* *
7917311 ACCTTCCACCTTTCATCTTCTTT-AACCTTTA
1 ACCTTCAACCTTCCATCTTCTTTAAACCTTTA
*
7917342 ACCTTTAACCTTCCATCTTCTTTAAACCTTT
1 ACCTTCAACCTTCCATCTTCTTTAAACCTTT
7917373 CATCTCCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 20 0.74
32 7 0.26
ACGTcount: A:0.21, C:0.34, G:0.00, T:0.45
Consensus pattern (32 bp):
ACCTTCAACCTTCCATCTTCTTTAAACCTTTA
Found at i:7917371 original size:18 final size:17
Alignment explanation
Indices: 7917318--7917388 Score: 58
Period size: 18 Copynumber: 4.2 Consensus size: 17
7917308 TTGACCTTCC
*
7917318 ACCTTTCATCTTCTTTA
1 ACCTTCCATCTTCTTTA
* *
7917335 ACCTT-TAAC--CTTTA
1 ACCTTCCATCTTCTTTA
7917349 ACCTTCCATCTTCTTTAA
1 ACCTTCCATCTTCTTT-A
* *
7917367 ACCTTTCATCTCCTTGTA
1 ACCTTCCATCTTCTT-TA
7917385 ACCT
1 ACCT
7917389 CATTTTCTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
14 10 0.23
15 2 0.05
16 2 0.05
17 9 0.21
18 19 0.44
19 1 0.02
ACGTcount: A:0.21, C:0.32, G:0.01, T:0.45
Consensus pattern (17 bp):
ACCTTCCATCTTCTTTA
Found at i:7919004 original size:17 final size:18
Alignment explanation
Indices: 7918972--7919005 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7918962 TGTTTTAAAC
*
7918972 TATTTATGAAATTTTATA
1 TATTTATGAAAATTTATA
7918990 TATTT-TGAAAATTTAT
1 TATTTATGAAAATTTAT
7919006 GTCACATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (18 bp):
TATTTATGAAAATTTATA
Found at i:7922913 original size:22 final size:22
Alignment explanation
Indices: 7922885--7922927 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
7922875 AGTAAGAGAC
7922885 CCGATCACCATAATGTAGAAAG
1 CCGATCACCATAATGTAGAAAG
7922907 CCGATCACCATAATGTAGAAA
1 CCGATCACCATAATGTAGAAA
7922928 TAAAATCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.19
Consensus pattern (22 bp):
CCGATCACCATAATGTAGAAAG
Found at i:7922935 original size:22 final size:22
Alignment explanation
Indices: 7922888--7922935 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
7922878 AAGAGACCCG
***
7922888 ATCACCATAATGTAGAAAGCCG
1 ATCACCATAATGTAGAAAGAAA
*
7922910 ATCACCATAATGTAGAAATAAA
1 ATCACCATAATGTAGAAAGAAA
7922932 ATCA
1 ATCA
7922936 AGTGAAATCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.48, C:0.19, G:0.12, T:0.21
Consensus pattern (22 bp):
ATCACCATAATGTAGAAAGAAA
Found at i:7932572 original size:2 final size:2
Alignment explanation
Indices: 7932565--7932596 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7932555 CGACCGAGGC
7932565 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7932597 AAAGAAAGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7940909 original size:135 final size:135
Alignment explanation
Indices: 7940667--7940938 Score: 490
Period size: 135 Copynumber: 2.0 Consensus size: 135
7940657 ACTTGTTGAA
7940667 TGATTGTGGTTGACAAGATTAATGTTTATTAACATTGTGTTAAATGTATAAAATGAAACGGGTAT
1 TGATTGTGGTTGACAAGATTAATGTTTATTAACATTGTGTTAAATGTATAAAATGAAACGGGTAT
* * * *
7940732 ATAAAACAGTTATATGGAATGAGAGACTGATATGAATTATTTAAACGAAATGTAATTTATAAAAT
66 ATAAAACAGTTATATAGAATAAGAGACTGATATGAATTATTTAAACAAAATGTAATTTACAAAAT
7940797 GATTT
131 GATTT
*
7940802 TGATTGTGGTTGACAGGATTAATGTTTATTAACATTGTGTTAAATGTATAAAATGAAACGGGTAT
1 TGATTGTGGTTGACAAGATTAATGTTTATTAACATTGTGTTAAATGTATAAAATGAAACGGGTAT
*
7940867 ATAAAATAGTTATATAGAATAAGAGACTGATATGAATTATTTAAACAAAATGTAATTTACAAAAT
66 ATAAAACAGTTATATAGAATAAGAGACTGATATGAATTATTTAAACAAAATGTAATTTACAAAAT
7940932 GATTT
131 GATTT
7940937 TG
1 TG
7940939 TGTTAAATGT
Statistics
Matches: 131, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
135 131 1.00
ACGTcount: A:0.41, C:0.04, G:0.18, T:0.36
Consensus pattern (135 bp):
TGATTGTGGTTGACAAGATTAATGTTTATTAACATTGTGTTAAATGTATAAAATGAAACGGGTAT
ATAAAACAGTTATATAGAATAAGAGACTGATATGAATTATTTAAACAAAATGTAATTTACAAAAT
GATTT
Found at i:7940970 original size:13 final size:13
Alignment explanation
Indices: 7940952--7941079 Score: 105
Period size: 13 Copynumber: 9.7 Consensus size: 13
7940942 TAAATGTGTA
7940952 ATATGAAATGGTT
1 ATATGAAATGGTT
* * *
7940965 ATATGAGACGATT
1 ATATGAAATGGTT
*
7940978 ATACGAAATGGTT
1 ATATGAAATGGTT
* **
7940991 ATATAAAATGAAT
1 ATATGAAATGGTT
*
7941004 ATATGAAATGATT
1 ATATGAAATGGTT
*
7941017 ATATGAATTGGTT
1 ATATGAAATGGTT
* *
7941030 ATATGGAAATAGAT
1 ATAT-GAAATGGTT
*
7941044 ATACT-AAATGATT
1 ATA-TGAAATGGTT
*
7941057 ATATGAATTGGTT
1 ATATGAAATGGTT
7941070 ATATGGAAAT
1 ATAT-GAAAT
7941080 AATTATAAAG
Statistics
Matches: 87, Mismatches: 24, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
12 1 0.01
13 72 0.83
14 13 0.15
15 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.19, T:0.36
Consensus pattern (13 bp):
ATATGAAATGGTT
Found at i:7941000 original size:39 final size:39
Alignment explanation
Indices: 7940964--7941112 Score: 110
Period size: 40 Copynumber: 3.8 Consensus size: 39
7940954 ATGAAATGGT
*
7940964 TATATGAGACGATTATACGAAATGGTTATATAAAATGAA
1 TATATGAAACGATTATACGAAATGGTTATATAAAATGAA
* * * *
7941003 TATATGAAATGATTATATGAATTGGTTATATGGAAAT-AGA
1 TATATGAAACGATTATACGAAATGGTTATAT-AAAATGA-A
* * * *
7941043 TATACT-AAATGATTATATGAATTGGTTATATGGAAAT-AA
1 TATA-TGAAACGATTATACGAAATGGTTATAT-AAAATGAA
* * *
7941082 T-TAT-AAAGTGTTTATACGAAATGTTTATATA
1 TATATGAAA-CGATTATACGAAATGGTTATATA
7941113 GATAGATATG
Statistics
Matches: 96, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
37 4 0.04
38 20 0.21
39 30 0.31
40 41 0.43
41 1 0.01
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.38
Consensus pattern (39 bp):
TATATGAAACGATTATACGAAATGGTTATATAAAATGAA
Found at i:7941032 original size:26 final size:26
Alignment explanation
Indices: 7940952--7941111 Score: 128
Period size: 26 Copynumber: 6.2 Consensus size: 26
7940942 TAAATGTGTA
* *
7940952 ATATGAAATGGTTATATGAGACGATT
1 ATATGAAATGGTTATATGAAATGATT
* * *
7940978 ATACGAAATGGTTATATAAAATGAAT
1 ATATGAAATGGTTATATGAAATGATT
* * *
7941004 ATATGAAATGATTATATGAATTGGTT
1 ATATGAAATGGTTATATGAAATGATT
* *
7941030 ATATGGAAATAGATATACT-AAATGATT
1 ATAT-GAAATGGTTATA-TGAAATGATT
* *
7941057 ATATGAATTGGTTATATGGAAATAATT
1 ATATGAAATGGTTATAT-GAAATGATT
* * * *
7941084 ATA--AAGTGTTTATACGAAATGTTT
1 ATATGAAATGGTTATATGAAATGATT
7941108 ATAT
1 ATAT
7941112 AGATAGATAT
Statistics
Matches: 104, Mismatches: 25, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
24 10 0.10
25 10 0.10
26 54 0.52
27 29 0.28
28 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.38
Consensus pattern (26 bp):
ATATGAAATGGTTATATGAAATGATT
Found at i:7941057 original size:40 final size:41
Alignment explanation
Indices: 7940964--7941080 Score: 152
Period size: 40 Copynumber: 2.9 Consensus size: 41
7940954 ATGAAATGGT
* * * * *
7940964 TATATGAGACGATTATACGAAATGGTTATAT-AAAAT-GAA
1 TATATGAAATGATTATATGAATTGGTTATATGGAAATAGAA
7941003 TATATGAAATGATTATATGAATTGGTTATATGGAAATAG-A
1 TATATGAAATGATTATATGAATTGGTTATATGGAAATAGAA
7941043 TATACT-AAATGATTATATGAATTGGTTATATGGAAATA
1 TATA-TGAAATGATTATATGAATTGGTTATATGGAAATA
7941081 ATTATAAAGT
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
39 27 0.39
40 41 0.59
41 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.36
Consensus pattern (41 bp):
TATATGAAATGATTATATGAATTGGTTATATGGAAATAGAA
Found at i:7943640 original size:39 final size:39
Alignment explanation
Indices: 7943584--7943792 Score: 292
Period size: 39 Copynumber: 5.4 Consensus size: 39
7943574 AATGGAATAT
** *
7943584 TGATTATACGGAATGCTTGCTCAAACGAGCATTATGCAC
1 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
* * *
7943623 TAATTATACTAAATGCTTGCTTAAACGAGTATTATCCAC
1 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
* * *
7943662 TAATTATACTGAATGCTTGCTCAAACAAGCATTATCCAC
1 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
* * * *
7943701 TGATTATACTGAATGCTTGCTCAAACGAGTAATATTCAC
1 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
7943740 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
1 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
*
7943779 TGGTTATACTAAAT
1 TGATTATACTAAAT
7943793 AAGATTTTCT
Statistics
Matches: 150, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 150 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.33
Consensus pattern (39 bp):
TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
Found at i:7945549 original size:16 final size:16
Alignment explanation
Indices: 7945528--7945558 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7945518 TTGGATTGAA
*
7945528 AAAAATTATTTAATTG
1 AAAAATTAATTAATTG
7945544 AAAAATTAATTAATT
1 AAAAATTAATTAATT
7945559 TAATTTAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
AAAAATTAATTAATTG
Found at i:7945561 original size:21 final size:18
Alignment explanation
Indices: 7945522--7945563 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
7945512 TTAGAATTGG
7945522 ATTGAAAAAAATTATTTA
1 ATTGAAAAAAATTATTTA
7945540 ATTGAAAAATTAATTAATTTA
1 ATTGAAAAA--AATT-ATTTA
7945561 ATT
1 ATT
7945564 TAATTTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.43
20 4 0.19
21 8 0.38
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (18 bp):
ATTGAAAAAAATTATTTA
Found at i:7946893 original size:53 final size:52
Alignment explanation
Indices: 7946835--7946941 Score: 126
Period size: 51 Copynumber: 2.0 Consensus size: 52
7946825 GCATAATAAT
* *
7946835 AAATTTAACTCTCCAATATTTATAAATTCTATCAATTTAGTTCTAATT-TTAAA
1 AAATTTAACCCT-CAAT-TTTACAAATTCTATCAATTTAGTTCTAATTCTTAAA
* * * * *
7946888 AAATTTAGCCCTCAATTTTACATATTCTATTAATTTAGTTTTACTTCTTAAA
1 AAATTTAACCCTCAATTTTACAAATTCTATCAATTTAGTTCTAATTCTTAAA
7946940 AA
1 AA
7946942 TTAAAATTTA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
51 25 0.54
52 11 0.24
53 10 0.22
ACGTcount: A:0.37, C:0.14, G:0.03, T:0.46
Consensus pattern (52 bp):
AAATTTAACCCTCAATTTTACAAATTCTATCAATTTAGTTCTAATTCTTAAA
Found at i:7947614 original size:20 final size:20
Alignment explanation
Indices: 7947589--7947633 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
7947579 CTTAAATTTT
*
7947589 TTTTATTTATAAGATTATTA
1 TTTTATTTATAAAATTATTA
*
7947609 TTTTATTTATAAAATTTTTA
1 TTTTATTTATAAAATTATTA
7947629 TTTTA
1 TTTTA
7947634 ATAAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTTATTTATAAAATTATTA
Found at i:7953876 original size:18 final size:18
Alignment explanation
Indices: 7953826--7953878 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
7953816 AATAATATAA
*
7953826 TTAAT-ATAATTTATTATT
1 TTAATAATAAATT-TTATT
*
7953844 TTAATATTAAAATTTTATT
1 TTAATAAT-AAATTTTATT
7953863 TTAATAATAAATTTTA
1 TTAATAATAAATTTTA
7953879 AAAACAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 13 0.43
19 13 0.43
20 4 0.13
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTAATAATAAATTTTATT
Found at i:7954218 original size:16 final size:16
Alignment explanation
Indices: 7954197--7954230 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7954187 GACTTAAAAG
*
7954197 TTAAAACTAATTGTTA
1 TTAAAACTAATTATTA
*
7954213 TTAAAATTAATTATTA
1 TTAAAACTAATTATTA
7954229 TT
1 TT
7954231 GAATTTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (16 bp):
TTAAAACTAATTATTA
Found at i:7954403 original size:8 final size:8
Alignment explanation
Indices: 7954390--7954414 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7954380 ATTTAATTAC
7954390 TTTTAACT
1 TTTTAACT
7954398 TTTTAACT
1 TTTTAACT
7954406 TTTTAACT
1 TTTTAACT
7954414 T
1 T
7954415 AAATATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTTAACT
Found at i:7955716 original size:13 final size:13
Alignment explanation
Indices: 7955698--7955831 Score: 94
Period size: 13 Copynumber: 10.2 Consensus size: 13
7955688 AATTTAAAAG
*
7955698 TTAAAACATTATA
1 TTAAAACAGTATA
*
7955711 TTAAAACAATATAA
1 TTAAAACAGTAT-A
* *
7955725 TTATAATAGTATA
1 TTAAAACAGTATA
*
7955738 TTAAAACAATATA
1 TTAAAACAGTATA
* *
7955751 TTAAAAAAATATA
1 TTAAAACAGTATA
* *
7955764 TTTATAATAGTATA
1 -TTAAAACAGTATA
7955778 TTAAAACAGTATA
1 TTAAAACAGTATA
* * *
7955791 TTATAA-ATTTTA
1 TTAAAACAGTATA
*
7955803 -TAACAATA-TATTA
1 TTAA-AACAGTA-TA
7955816 TTAAAACAGTATA
1 TTAAAACAGTATA
7955829 TTA
1 TTA
7955832 CATTAAAAAT
Statistics
Matches: 95, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
11 2 0.02
12 7 0.07
13 61 0.64
14 25 0.26
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (13 bp):
TTAAAACAGTATA
Found at i:7955743 original size:40 final size:40
Alignment explanation
Indices: 7955698--7955793 Score: 156
Period size: 40 Copynumber: 2.4 Consensus size: 40
7955688 AATTTAAAAG
* *
7955698 TTAAAACATTATATTAAAACAATATAATTATAATAGTATA
1 TTAAAACAATATATTAAAAAAATATAATTATAATAGTATA
*
7955738 TTAAAACAATATATTAAAAAAATATATTTATAATAGTATA
1 TTAAAACAATATATTAAAAAAATATAATTATAATAGTATA
*
7955778 TTAAAACAGTATATTA
1 TTAAAACAATATATTA
7955794 TAAATTTTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.38
Consensus pattern (40 bp):
TTAAAACAATATATTAAAAAAATATAATTATAATAGTATA
Found at i:7955804 original size:27 final size:26
Alignment explanation
Indices: 7955666--7955798 Score: 99
Period size: 27 Copynumber: 4.9 Consensus size: 26
7955656 AAATTAAATG
*
7955666 TATATTTATAACAGTATATTAAAATTTAA
1 TATA-TTAAAACAGTATATTAAAA--TAA
* *
7955695 -A-AGTTAAAACATTATATTAAAACAA
1 TATA-TTAAAACAGTATATTAAAATAA
* * *
7955720 TATAATTATAATAGTATATTAAAACAA
1 TAT-ATTAAAACAGTATATTAAAATAA
* * * *
7955747 TATATTAAAAAAATATATTTATAATAG
1 TATATTAAAACAGTATA-TTAAAATAA
7955774 TATATTAAAACAGTATATTATAAAT
1 TATATTAAAACAGTATATTA-AAAT
7955799 TTTATAACAA
Statistics
Matches: 83, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
25 2 0.02
26 15 0.18
27 64 0.77
28 2 0.02
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (26 bp):
TATATTAAAACAGTATATTAAAATAA
Found at i:7956073 original size:15 final size:13
Alignment explanation
Indices: 7956000--7956091 Score: 114
Period size: 13 Copynumber: 7.0 Consensus size: 13
7955990 AATTTAAAAG
*
7956000 TTAAAACATTATA
1 TTAAAACAATATA
*
7956013 TTAAAACAATACAA
1 TTAAAACAATA-TA
* *
7956027 TTATAACAGTATA
1 TTAAAACAATATA
*
7956040 TTATAACAATATA
1 TTAAAACAATATA
7956053 TTAAAACAATATA
1 TTAAAACAATATA
7956066 TTAAAA-AAGTATA
1 TTAAAACAA-TATA
7956079 TTAAAACAATATA
1 TTAAAACAATATA
7956092 ACCGAACTCA
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
12 2 0.03
13 55 0.80
14 12 0.17
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.33
Consensus pattern (13 bp):
TTAAAACAATATA
Found at i:7957199 original size:8 final size:8
Alignment explanation
Indices: 7957188--7957221 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
7957178 AGTGAAGCAC
7957188 CGTGGAGT
1 CGTGGAGT
7957196 CGTGGAGT
1 CGTGGAGT
7957204 CGTGGA--
1 CGTGGAGT
7957210 CGTGGAGT
1 CGTGGAGT
7957218 CGTG
1 CGTG
7957222 AATCGGTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
8 18 0.75
ACGTcount: A:0.12, C:0.15, G:0.50, T:0.24
Consensus pattern (8 bp):
CGTGGAGT
Found at i:7957216 original size:22 final size:22
Alignment explanation
Indices: 7957188--7957239 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
7957178 AGTGAAGCAC
*
7957188 CGTGGAGTCGTGGAGTC-GTGGA
1 CGTGGAGTCGT-GAATCGGTGGA
7957210 CGTGGAGTCGTGAATCGGTGGA
1 CGTGGAGTCGTGAATCGGTGGA
*
7957232 GGTGGAGT
1 CGTGGAGT
7957240 TGGATCCGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.15, C:0.12, G:0.50, T:0.23
Consensus pattern (22 bp):
CGTGGAGTCGTGAATCGGTGGA
Found at i:7961435 original size:6 final size:6
Alignment explanation
Indices: 7961426--7961450 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7961416 TTCTTCTTCT
7961426 CACAGC CACAGC CACAGC CACAGC C
1 CACAGC CACAGC CACAGC CACAGC C
7961451 TCTTCTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.52, G:0.16, T:0.00
Consensus pattern (6 bp):
CACAGC
Found at i:7966266 original size:95 final size:95
Alignment explanation
Indices: 7966103--7966293 Score: 339
Period size: 95 Copynumber: 2.0 Consensus size: 95
7966093 GCTAAACCCA
7966103 ACACATCCTTATTTAACAAGGCTAAGATACTAATAAATGTGCAATGAAAAGTAACCAGCTCGAGT
1 ACACATCCTTATTTAACAAGGCTAAGATACTAATAAATGTGCAATGAAAAGTAACCAGCTCGAGT
7966168 CATGTTAATTGTTGTAAGCTTATTAGAAAG
66 CATGTTAATTGTTGTAAGCTTATTAGAAAG
* * *
7966198 ACACATCCTTATTTAACAAGGCTAAGATACTAATAGATGTGCAATGAAAAGTAACC-GATTTGAG
1 ACACATCCTTATTTAACAAGGCTAAGATACTAATAAATGTGCAATGAAAAGTAACCAG-CTCGAG
7966262 TCATGTTAATTGTTGTAAGCTTATTAGAAAG
65 TCATGTTAATTGTTGTAAGCTTATTAGAAAG
7966293 A
1 A
7966294 TTTAATTCTT
Statistics
Matches: 92, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
94 1 0.01
95 91 0.99
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (95 bp):
ACACATCCTTATTTAACAAGGCTAAGATACTAATAAATGTGCAATGAAAAGTAACCAGCTCGAGT
CATGTTAATTGTTGTAAGCTTATTAGAAAG
Found at i:7967839 original size:27 final size:27
Alignment explanation
Indices: 7967809--7967861 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
7967799 ACTATCTCAT
7967809 AATTCAAGTATATCATTAAAACATACC
1 AATTCAAGTATATCATTAAAACATACC
*
7967836 AATTCAAGTATATGATTAAAACATAC
1 AATTCAAGTATATCATTAAAACATAC
7967862 ACTTTACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.49, C:0.15, G:0.06, T:0.30
Consensus pattern (27 bp):
AATTCAAGTATATCATTAAAACATACC
Found at i:7973633 original size:18 final size:18
Alignment explanation
Indices: 7973610--7973647 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
7973600 AGATAAAATG
7973610 GGCCAATGTGCGCCACAA
1 GGCCAATGTGCGCCACAA
7973628 GGCCAATGTGCGCCACAA
1 GGCCAATGTGCGCCACAA
7973646 GG
1 GG
7973648 AAAAGTTGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.32, G:0.32, T:0.11
Consensus pattern (18 bp):
GGCCAATGTGCGCCACAA
Found at i:7974105 original size:29 final size:29
Alignment explanation
Indices: 7974063--7974124 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
7974053 CCAAAAAGGG
*
7974063 TTCTTGAGGCTTAGAATCCGTACTTAGCC
1 TTCTTAAGGCTTAGAATCCGTACTTAGCC
7974092 TTCTTAAGGCTTAGAATCCGTACTTAGCC
1 TTCTTAAGGCTTAGAATCCGTACTTAGCC
7974121 TTCT
1 TTCT
7974125 CAACGAGTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (29 bp):
TTCTTAAGGCTTAGAATCCGTACTTAGCC
Found at i:7980275 original size:12 final size:12
Alignment explanation
Indices: 7980258--7980289 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
7980248 TGCTTAGTAT
7980258 GAAAATGTGATG
1 GAAAATGTGATG
7980270 GAAAATGTGATG
1 GAAAATGTGATG
7980282 GAAAATGT
1 GAAAATGT
7980290 AATTTAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.31, T:0.25
Consensus pattern (12 bp):
GAAAATGTGATG
Found at i:7986980 original size:202 final size:202
Alignment explanation
Indices: 7986634--7987241 Score: 1153
Period size: 202 Copynumber: 3.0 Consensus size: 202
7986624 TAAGTTGTTG
*
7986634 AATTTCCGATTTTTGCTAATTATTTACATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
1 AATTTCCGATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
7986699 TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGCATAAGGATCAAATTTT
66 TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGCATAAGGATCAAATTTT
*
7986764 GACAAATTAAAGTAGATGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATT
131 GACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATT
7986829 AAACCTA
196 AAACCTA
*
7986836 AATTTCCAATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
1 AATTTCCGATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
7986901 TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGCATAAGGATCAAATTTT
66 TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGCATAAGGATCAAATTTT
*
7986966 GACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGACGGAATTCATAATT
131 GACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATT
7987031 AAACCTA
196 AAACCTA
7987038 AATTTCCGATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
1 AATTTCCGATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
*
7987103 TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGTATAAGGATCAAATTTT
66 TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGCATAAGGATCAAATTTT
* *
7987168 GACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGCAGAGGGATGGAAATCATAATT
131 GACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATT
7987233 AAACCTA
196 AAACCTA
7987240 AA
1 AA
7987242 AAAGGTAATG
Statistics
Matches: 397, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
202 397 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (202 bp):
AATTTCCGATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGCATAAGGATCAAATTTT
GACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATT
AAACCTA
Found at i:7990471 original size:15 final size:15
Alignment explanation
Indices: 7990451--7990481 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7990441 CGCAGCCTTG
7990451 GCATACTTGAGTCGT
1 GCATACTTGAGTCGT
7990466 GCATACTTGAGTCGT
1 GCATACTTGAGTCGT
7990481 G
1 G
7990482 AACCCAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.32
Consensus pattern (15 bp):
GCATACTTGAGTCGT
Found at i:7992944 original size:52 final size:51
Alignment explanation
Indices: 7992867--7992966 Score: 182
Period size: 52 Copynumber: 1.9 Consensus size: 51
7992857 AGAGAGTGAG
7992867 AGAGAGAACGACACACAGCCTAAATAAATCAACCAATTCATAGGTGCTCGC
1 AGAGAGAACGACACACAGCCTAAATAAATCAACCAATTCATAGGTGCTCGC
*
7992918 AGAGAGAATGACACCACAGCCTAAATAAATCAACCAATTCATAGGTGCT
1 AGAGAGAACGACA-CACAGCCTAAATAAATCAACCAATTCATAGGTGCT
7992967 TGCATCCTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 12 0.26
52 35 0.74
ACGTcount: A:0.42, C:0.24, G:0.17, T:0.17
Consensus pattern (51 bp):
AGAGAGAACGACACACAGCCTAAATAAATCAACCAATTCATAGGTGCTCGC
Found at i:8002284 original size:35 final size:35
Alignment explanation
Indices: 8002223--8002289 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
8002213 GAAGAAGGAT
*
8002223 AAAATACAAAAATATGTATATGTGTATATATTTAC
1 AAAATACAAAAATATGTATATATGTATATATTTAC
*
8002258 AAAATA-AAAAA-ATGTATAAGTATGTATGTATT
1 AAAATACAAAAATATGTAT-A-TATGTATATATT
8002290 GGAAAATAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 6 0.21
34 6 0.21
35 16 0.57
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (35 bp):
AAAATACAAAAATATGTATATATGTATATATTTAC
Found at i:8002426 original size:24 final size:22
Alignment explanation
Indices: 8002376--8002430 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
8002366 TATAGAATAA
*
8002376 TAAAAAAATGTTTATAATAATT
1 TAAAAAAATGTATATAATAATT
* *
8002398 CAAAAAAATGTATATATATATTT
1 TAAAAAAATGTATATA-ATAATT
8002421 GTAAAAAAAT
1 -TAAAAAAAT
8002431 TATGAAGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 14 0.52
23 5 0.19
24 8 0.30
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.36
Consensus pattern (22 bp):
TAAAAAAATGTATATAATAATT
Found at i:8002655 original size:25 final size:25
Alignment explanation
Indices: 8002604--8002683 Score: 81
Period size: 26 Copynumber: 3.1 Consensus size: 25
8002594 AATGCATATA
*
8002604 CATATATATTATATAAAAAAACAATG
1 CATATATA-TATATATAAAAACAATG
* *
8002630 CGTGTATACTATATATAAAAA-AATG
1 CATATATA-TATATATAAAAACAATG
**
8002655 CATATATATATTATATAAAGTCAATG
1 CATATATATA-TATATAAAAACAATG
8002681 CAT
1 CAT
8002684 GTGGATGAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
24 2 0.05
25 18 0.41
26 24 0.55
ACGTcount: A:0.50, C:0.09, G:0.07, T:0.34
Consensus pattern (25 bp):
CATATATATATATATAAAAACAATG
Found at i:8002738 original size:3 final size:3
Alignment explanation
Indices: 8002704--8002765 Score: 63
Period size: 3 Copynumber: 20.3 Consensus size: 3
8002694 GTAGAGATAG
* * * *
8002704 TAA TAG TAA TAA TGA TAA TATT TAA T-A TAA TAA TAA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
8002749 TAAA TAA TAA TAA TAA T
1 T-AA TAA TAA TAA TAA T
8002766 TTAAAAAACA
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
2 2 0.04
3 41 0.85
4 5 0.10
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:8002742 original size:24 final size:25
Alignment explanation
Indices: 8002704--8002765 Score: 90
Period size: 24 Copynumber: 2.5 Consensus size: 25
8002694 GTAGAGATAG
* * *
8002704 TAATAGTAATAATGATAATATTTAA
1 TAATAATAATAATGATAATAATAAA
8002729 T-ATAATAATAATGATAATAATAAA
1 TAATAATAATAATGATAATAATAAA
8002753 TAATAATAATAAT
1 TAATAATAATAAT
8002766 TTAAAAAACA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 21 0.64
25 12 0.36
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (25 bp):
TAATAATAATAATGATAATAATAAA
Found at i:8002756 original size:19 final size:20
Alignment explanation
Indices: 8002704--8002765 Score: 72
Period size: 19 Copynumber: 3.0 Consensus size: 20
8002694 GTAGAGATAG
* *
8002704 TAATAGTAATAATGATAATATT
1 TAATA-TAATAATAATAATA-A
*
8002726 TAATATAATAATAATGATAA
1 TAATATAATAATAATAATAA
8002746 TAATA-AATAATAATAATAA
1 TAATATAATAATAATAATAA
8002765 T
1 T
8002766 TTAAAAAACA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
19 14 0.39
20 5 0.14
21 12 0.33
22 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
TAATATAATAATAATAATAA
Found at i:8010885 original size:17 final size:17
Alignment explanation
Indices: 8010850--8010886 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
8010840 ATATATGTTC
*
8010850 TATTGTTGGAATTAAAT
1 TATTGTTGGAAATAAAT
*
8010867 TATTGTTGGAAATATAT
1 TATTGTTGGAAATAAAT
8010884 TAT
1 TAT
8010887 CGAATTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (17 bp):
TATTGTTGGAAATAAAT
Found at i:8019469 original size:15 final size:15
Alignment explanation
Indices: 8019433--8019470 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
8019423 CCCTTTTGTT
8019433 TTTTTTCTATTTCAA
1 TTTTTTCTATTTCAA
*
8019448 TTGTTTCT-TTTCAAA
1 TTTTTTCTATTTC-AA
8019463 TTTTTTCT
1 TTTTTTCT
8019471 GCTTCACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.16, C:0.13, G:0.03, T:0.68
Consensus pattern (15 bp):
TTTTTTCTATTTCAA
Found at i:8019571 original size:19 final size:19
Alignment explanation
Indices: 8019536--8019574 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8019526 CCCATTAAAA
8019536 AATATTATATTTCTTCATG
1 AATATTATATTTCTTCATG
8019555 AATACTTATATTT-TTCATG
1 AATA-TTATATTTCTTCATG
8019574 A
1 A
8019575 GTAATTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.51
Consensus pattern (19 bp):
AATATTATATTTCTTCATG
Found at i:8020491 original size:6 final size:6
Alignment explanation
Indices: 8020461--8020494 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
8020451 GTCTCTGAAC
* *
8020461 CAAAAA AAAAAA AAAAAA CAAAAA CAAAAA CAAA
1 CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA CAAA
8020495 CAGAAATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (6 bp):
CAAAAA
Found at i:8035822 original size:7 final size:7
Alignment explanation
Indices: 8035810--8035843 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
8035800 TGTATTTGTT
8035810 TGAATTA
1 TGAATTA
8035817 TGAATTA
1 TGAATTA
8035824 TGAATTA
1 TGAATTA
8035831 TGAATTA
1 TGAATTA
8035838 TGAATT
1 TGAATT
8035844 GTGGATTGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (7 bp):
TGAATTA
Found at i:8036033 original size:20 final size:21
Alignment explanation
Indices: 8036008--8036055 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
8035998 TTGTAAGGGA
*
8036008 TTGCACTTCGGTGCCACT-AT
1 TTGCACTTCGGTGCCACTGAC
8036028 TTGCACTTCGGTGCCACTGAC
1 TTGCACTTCGGTGCCACTGAC
8036049 TTGCACT
1 TTGCACT
8036056 ACGATACCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 18 0.69
21 8 0.31
ACGTcount: A:0.15, C:0.31, G:0.21, T:0.33
Consensus pattern (21 bp):
TTGCACTTCGGTGCCACTGAC
Found at i:8036105 original size:22 final size:22
Alignment explanation
Indices: 8036062--8036157 Score: 102
Period size: 22 Copynumber: 4.3 Consensus size: 22
8036052 CACTACGATA
* * *
8036062 CCTATTGTTCAGCATTTCGGTG
1 CCTACTGTTCAACACTTCGGTG
* *
8036084 CCCACTGTCCAACACTTCGGTG
1 CCTACTGTTCAACACTTCGGTG
* *
8036106 CCTACTATTCAACACTTTGGTG
1 CCTACTGTTCAACACTTCGGTG
* *
8036128 CCTATTGTTTAAGCACTTCGGTG
1 CCTACTGTTCAA-CACTTCGGTG
8036151 CCTACTG
1 CCTACTG
8036158 GTGTGGTGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
22 44 0.75
23 15 0.25
ACGTcount: A:0.18, C:0.29, G:0.19, T:0.34
Consensus pattern (22 bp):
CCTACTGTTCAACACTTCGGTG
Found at i:8037000 original size:30 final size:30
Alignment explanation
Indices: 8036966--8037029 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 30
8036956 TTTAAAATAC
8036966 TTTTAAAATACTTTTTTAAAAT-T-TTTTTAA
1 TTTTAAAATA--TTTTTAAAATATATTTTTAA
*
8036996 TTTTAAAATATTTTTAAAATATATTTTTAT
1 TTTTAAAATATTTTTAAAATATATTTTTAA
8037026 TTTT
1 TTTT
8037030 TTAATTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 10 0.32
29 1 0.03
30 20 0.65
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTTAAAATATTTTTAAAATATATTTTTAA
Found at i:8037010 original size:11 final size:11
Alignment explanation
Indices: 8036955--8037022 Score: 56
Period size: 11 Copynumber: 6.4 Consensus size: 11
8036945 ATTTTTTTAA
*
8036955 TTTTAAAATAC
1 TTTTAAAATAT
8036966 TTTTAAAATACTT
1 TTTTAAAATA--T
8036979 TTTTAAAAT-T
1 TTTTAAAATAT
*
8036989 TTTT----TAA
1 TTTTAAAATAT
8036996 TTTTAAAATAT
1 TTTTAAAATAT
8037007 TTTTAAAATAT
1 TTTTAAAATAT
8037018 ATTTT
1 -TTTT
8037023 TATTTTTTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
6 1 0.02
7 4 0.09
10 5 0.11
11 23 0.50
12 4 0.09
13 9 0.20
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:8039603 original size:24 final size:22
Alignment explanation
Indices: 8039570--8039629 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 22
8039560 TTTGGATTTT
* *
8039570 TTTAAATATAAATCTTTCAAAAA
1 TTTAATTATAAATATTT-AAAAA
* *
8039593 TTTATATTATATATATTTAAAAT
1 TTTA-ATTATAAATATTTAAAAA
*
8039616 TTTAATCATAAATA
1 TTTAATTATAAATA
8039630 AGATAAATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
22 8 0.27
23 12 0.40
24 10 0.33
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (22 bp):
TTTAATTATAAATATTTAAAAA
Found at i:8041970 original size:8 final size:8
Alignment explanation
Indices: 8041957--8041995 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
8041947 CGGTTAAATC
8041957 AATTTATA
1 AATTTATA
8041965 AATTTATA
1 AATTTATA
8041973 AATTTTTATA
1 AA--TTTATA
*
8041983 AATTTATT
1 AATTTATA
8041991 AATTT
1 AATTT
8041996 TATGAACTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 20 0.71
10 8 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
AATTTATA
Found at i:8041982 original size:18 final size:18
Alignment explanation
Indices: 8041959--8041996 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
8041949 GTTAAATCAA
8041959 TTTATAAATTTATAAATT
1 TTTATAAATTTATAAATT
*
8041977 TTTATAAATTTATTAATT
1 TTTATAAATTTATAAATT
8041995 TT
1 TT
8041997 ATGAACTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTATAAATTTATAAATT
Found at i:8041998 original size:17 final size:17
Alignment explanation
Indices: 8041959--8042011 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
8041949 GTTAAATCAA
*
8041959 TTTATAAATTTATAAATT
1 TTTATAAATTTATTAA-T
8041977 TTTATAAATTTATTAAT
1 TTTATAAATTTATTAAT
*
8041994 TTTATGAACTTT-TTAAT
1 TTTAT-AAATTTATTAAT
8042011 T
1 T
8042012 ATTTATTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
17 12 0.38
18 20 0.62
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (17 bp):
TTTATAAATTTATTAAT
Found at i:8048839 original size:12 final size:12
Alignment explanation
Indices: 8048822--8048847 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8048812 TTTAAAATAA
8048822 TTTAAAATTTTT
1 TTTAAAATTTTT
8048834 TTTAAAATTTTT
1 TTTAAAATTTTT
8048846 TT
1 TT
8048848 AAACCGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTAAAATTTTT
Found at i:8051011 original size:15 final size:15
Alignment explanation
Indices: 8050993--8051045 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
8050983 AATTCGTTTT
*
8050993 TTATTATTACCATTA
1 TTATTATTACTATTA
*
8051008 TTATCATATTATTTATTA
1 TTAT--TATTA-CTATTA
*
8051026 TCATTATTACTATTA
1 TTATTATTACTATTA
8051041 TTATT
1 TTATT
8051046 TCTATATTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 13 0.43
16 5 0.17
17 5 0.17
18 7 0.23
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATTATTACTATTA
Found at i:8051045 original size:12 final size:12
Alignment explanation
Indices: 8050993--8051050 Score: 50
Period size: 12 Copynumber: 5.1 Consensus size: 12
8050983 AATTCGTTTT
*
8050993 TTATTATTACCA
1 TTATTATTACTA
*
8051005 TTATTATCA-TA
1 TTATTATTACTA
*
8051016 TTA-T-TTATTA
1 TTATTATTACTA
*
8051026 TCATTATTACTA
1 TTATTATTACTA
*
8051038 TTATTATTTCTA
1 TTATTATTACTA
8051050 T
1 T
8051051 ATTCACATGC
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
9 2 0.06
10 5 0.14
11 5 0.14
12 24 0.67
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:8061887 original size:89 final size:89
Alignment explanation
Indices: 8061729--8062153 Score: 665
Period size: 89 Copynumber: 4.8 Consensus size: 89
8061719 AAAGATGACA
** * * *
8061729 GATCTTGTCTTCATGTATTGGAGTGAAATAGATCGAAAGA-AAGCAGATCTTGTCTTCCCATACT
1 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATC-AAATATAA-CAGATCTTGTCTTCCCATACT
8061793 GGTGGCGAAGGAGATCGAAGAAAGCG
64 GGTGGCGAAGGAGATCGAAGAAAGCG
* *
8061819 TATCTTGTCTTCATGTACCGGTGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
1 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
*
8061884 TGGCAAAGGAGATCGAAGAAAGCG
66 TGGCGAAGGAGATCGAAGAAAGCG
8061908 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
1 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
*
8061973 TGGCGAAGGAGATCGAAAAAAGCG
66 TGGCGAAGGAGATCGAAGAAAGCG
8061997 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
1 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
* * *
8062062 TGGCGAAGTAGATCGAAGAAAACA
66 TGGCGAAGGAGATCGAAGAAAGCG
* * * *
8062086 AATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACAGATCTTGT-TTCCCCATACTG
1 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTT-CCCATACTG
8062150 GTGG
65 GTGG
8062154 TGGAGCAGAT
Statistics
Matches: 314, Mismatches: 19, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
88 2 0.01
89 281 0.89
90 31 0.10
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (89 bp):
GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
TGGCGAAGGAGATCGAAGAAAGCG
Found at i:8062176 original size:45 final size:45
Alignment explanation
Indices: 8061719--8062177 Score: 339
Period size: 45 Copynumber: 10.3 Consensus size: 45
8061709 AGCAGGTTGA
* *** * * *
8061719 AAAGATGACAGATCTTGTCTTCATGTATTGG-AGTGAAATAGATC
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
* *
8061763 GAAAGA-AAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGGAGATC
1 -AAAGATAA-CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
* *** *
8061809 GAAGA-AAGC-GTATCTTGTCTTCATGTACCGGT-GTGAAGTAGATC
1 AAAGATAA-CAG-ATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
* ** *
8061853 AAATATAACAGATCTTGTCTTCCCATACTGGTGGCAAAGGAGATC
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
* * *** * *
8061898 GAAGA-AAGCGGATCTTGTCTTCATGTACCGG-CGTGAAGTAGATC
1 AAAGATAA-CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
* * *
8061942 AAATATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGGAGATC
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
* *** * *
8061987 GAAA-A-AAGCGGATCTTGTCTTCATGTACCGG-CGTGAAGTAGATC
1 -AAAGATAA-CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
* *
8062031 AAATATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
* * * *** *
8062076 GAAGAAAACAAATCTTGTCTTCATGTACTGG-CGTGAAGTAGATC
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
* * *
8062120 AAAGACAACAGATCTTGT-TTCCCCATACTGGTGGTGGAGCAGATC
1 AAAGATAACAGATCTTGTCTT-CCCATACTGGTGGTGAAGTAGATC
*
8062165 AAAGATGACAGAT
1 AAAGATAACAGAT
8062178 TTTACCTCCC
Statistics
Matches: 317, Mismatches: 81, Indels: 32
0.74 0.19 0.07
Matches are distributed among these distances:
43 5 0.02
44 129 0.41
45 171 0.54
46 12 0.04
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (45 bp):
AAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
Found at i:8062396 original size:132 final size:132
Alignment explanation
Indices: 8062153--8062405 Score: 323
Period size: 132 Copynumber: 1.9 Consensus size: 132
8062143 CATACTGGTG
* *
8062153 GTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTGCAGCGGAGTATATTGAAGCCAG
1 GTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAACGGAGTATATTGAAGCCAG
* * * *
8062218 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAA
66 TAATTCTATCTCCCTGGGCAGCAATGGAATAGATTGAAAATCACAGATCTCATCTCCCTAAGCAA
8062283 TA
131 TA
** *
8062285 GTGGAGCAGATCAAAGATGATGGATTTTACCTCCCTGAGGTTACAATGGAGTATATTGAAGCCAG
1 GTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAACGGAGTATATTGAAGCCAG
* ** * * *
8062350 T-ATTCCTATCTCCTTGAAGTTA-TAATGGAGTGGATT-AAAATCACAGATCTCATCTC
66 TAATT-CTATCTCCCTG--GGCAGCAATGGAATAGATTGAAAATCACAGATCTCATCTC
8062406 TCTGAAGTTG
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
131 3 0.03
132 88 0.85
133 10 0.10
134 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (132 bp):
GTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAACGGAGTATATTGAAGCCAG
TAATTCTATCTCCCTGGGCAGCAATGGAATAGATTGAAAATCACAGATCTCATCTCCCTAAGCAA
TA
Found at i:8063214 original size:15 final size:15
Alignment explanation
Indices: 8063187--8063215 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8063177 CATTTATACA
8063187 TATATATTATTTTTT
1 TATATATTATTTTTT
8063202 TATAT-TTATTTTTT
1 TATATATTATTTTTT
8063216 CGCTTAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TATATATTATTTTTT
Found at i:8063769 original size:3 final size:3
Alignment explanation
Indices: 8063763--8063809 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
8063753 AATTCATTTT
** *
8063763 TTA TTA TTA CCA TTA TTA TTA -TA TTA TTTA TTA TCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
8063808 TT
1 TT
8063810 TCTATATTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
2 2 0.06
3 31 0.86
4 3 0.08
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:8063808 original size:12 final size:12
Alignment explanation
Indices: 8063763--8063808 Score: 67
Period size: 12 Copynumber: 3.8 Consensus size: 12
8063753 AATTCATTTT
*
8063763 TTATTATTACCA
1 TTATTATTATCA
8063775 TTATTATTAT-A
1 TTATTATTATCA
8063786 TTATTTATTATCA
1 TTA-TTATTATCA
8063799 TTATTATTAT
1 TTATTATTAT
8063809 TTCTATATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 4 0.13
12 23 0.74
13 4 0.13
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.61
Consensus pattern (12 bp):
TTATTATTATCA
Found at i:8063820 original size:21 final size:19
Alignment explanation
Indices: 8063774--8063820 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
8063764 TATTATTACC
8063774 ATTATT-ATTATATTATTT
1 ATTATTCATTATATTATTT
8063792 ATTA-TCATTATTATTATTT
1 ATTATTCATTA-TATTATTT
*
8063811 CTATATTCAT
1 AT-TATTCAT
8063821 ATGCATAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 1 0.04
18 8 0.33
19 9 0.38
20 2 0.08
21 4 0.17
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTATTCATTATATTATTT
Found at i:8064744 original size:4 final size:4
Alignment explanation
Indices: 8064735--8064832 Score: 72
Period size: 4 Copynumber: 22.8 Consensus size: 4
8064725 ATACAACAAC
* * ** *
8064735 AAAT AAAT AAAT AAAT AAACT AAA- ACAT AAAA AAAT GGAT ATAT AAAT
1 AAAT AAAT AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAT
8064783 AAAT AAAT AAAT GAACAT AAAGT AAAAT AAAAT AAAAT AAAAT AAAT AAA
1 AAAT AAAT AAAT -AA-AT AAA-T -AAAT -AAAT -AAAT -AAAT AAAT AAA
8064833 ATAATAATAA
Statistics
Matches: 79, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
3 2 0.03
4 47 0.59
5 25 0.32
6 5 0.06
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:8064813 original size:5 final size:5
Alignment explanation
Indices: 8064779--8064849 Score: 69
Period size: 5 Copynumber: 14.4 Consensus size: 5
8064769 ATGGATATAT
* *
8064779 AAAT- AAAT- AAAT- AAATGA ACATA AAGTA AAATA AAATA AAATA AAAT-
1 AAATA AAATA AAATA AAAT-A AAATA AAATA AAATA AAATA AAATA AAATA
8064826 AAATA AAATA ATAATA ACAATA AA
1 AAATA AAATA A-AATA A-AATA AA
8064850 GGAAAATAGA
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
4 16 0.28
5 29 0.50
6 13 0.22
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:8066806 original size:44 final size:43
Alignment explanation
Indices: 8066728--8066940 Score: 173
Period size: 44 Copynumber: 4.9 Consensus size: 43
8066718 TTGTGGTAGA
* * *
8066728 TTTAATCCGAC-CTACTGCAACTTCAAAGG-TATAGGATTCATCAT
1 TTTAATCCG-CTCTACTGCAACTTC-AGGGAGATAGGATT-ATGAT
* *
8066772 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTTGTGAT
1 TTTAATCCGCTCTACTGCAACTTCAGGGAGATAGGA-TTATGAT
* * * * *
8066816 TCTTCAATCTGCTCCACTGGAACTTCAGGGAGATAAGATT-GGA-
1 T-TT-AATCCGCTCTACTGCAACTTCAGGGAGATAGGATTATGAT
** * * * * *
8066859 TACAATCTGCTCTACTGCAACTTCAGAGAGATAAGACTTGTGGT
1 TTTAATCCGCTCTACTGCAACTTCAGGGAGATAGGA-TTATGAT
*
8066903 TTTAATCCACTCTACTGCAACTTCAGGGAGATAGGATT
1 TTTAATCCGCTCTACTGCAACTTCAGGGAGATAGGATT
8066941 GGCTTCTTCA
Statistics
Matches: 139, Mismatches: 22, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
41 30 0.22
42 2 0.01
43 8 0.06
44 63 0.45
45 6 0.04
46 30 0.22
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (43 bp):
TTTAATCCGCTCTACTGCAACTTCAGGGAGATAGGATTATGAT
Found at i:8066840 original size:46 final size:43
Alignment explanation
Indices: 8066770--8066955 Score: 182
Period size: 44 Copynumber: 4.3 Consensus size: 43
8066760 AGGATTCATC
* *
8066770 ATTTT-AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTTGTG
1 ATTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-G
*
8066814 ATTCTTCAATCTGCTCCACTGGAACTTCAGGGAGATAAGATTGG
1 ATT-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGG
* * *
8066858 A--TACAATCTGCTCTACTGCAACTTCAGAGAGATAAGACTTGTG
1 ATTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-G
* ** * *
8066901 GTTTT-AATCCACTCTACTGCAACTTCAGGGAGATAGGATTGG
1 ATTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGG
*
8066943 CTTCTTCAATCTG
1 ATT-TTCAATCTG
8066956 TTTAACTGCA
Statistics
Matches: 118, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
41 32 0.27
42 6 0.05
43 6 0.05
44 38 0.32
45 6 0.05
46 30 0.25
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (43 bp):
ATTTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGG
Found at i:8066964 original size:44 final size:44
Alignment explanation
Indices: 8066785--8066975 Score: 148
Period size: 44 Copynumber: 4.4 Consensus size: 44
8066775 AATCCGCTCC
* * *
8066785 ACTGCAACTTCAGGGAGATAGGATTTGTGATTCTTCAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGACTTGTG-TTCTTCAATCTG-TCT
* * *
8066831 ACTGGAACTTCAGGGAGATAAGA-TTG-G--ATACAATCTGCTCT
1 ACTGCAACTTCAGGGAGATAAGACTTGTGTTCTTCAATCTG-TCT
* **
8066872 ACTGCAACTTCAGAGAGATAAGACTTGTGGTT-TT-AATCCACTCT
1 ACTGCAACTTCAGGGAGATAAGACTTGT-GTTCTTCAAT-CTGTCT
* *
8066916 ACTGCAACTTCAGGGAGATAGGA-TTG-GCTTCTTCAATCTGTTT
1 ACTGCAACTTCAGGGAGATAAGACTTGTG-TTCTTCAATCTGTCT
8066959 AACTGCAA-TGTCAGGGA
1 -ACTGCAACT-TCAGGGA
8066976 AGTGAGATTC
Statistics
Matches: 119, Mismatches: 15, Indels: 24
0.75 0.09 0.15
Matches are distributed among these distances:
41 33 0.28
42 5 0.04
43 9 0.08
44 46 0.39
45 5 0.04
46 21 0.18
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGACTTGTGTTCTTCAATCTGTCT
Found at i:8067061 original size:25 final size:25
Alignment explanation
Indices: 8067029--8067077 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
8067019 CTTAGGGCGT
* *
8067029 AAGATTCACTGTTGTAGCTTTAATC
1 AAGATTCACCGATGTAGCTTTAATC
*
8067054 AAGATTCACCGATGTGGCTTTAAT
1 AAGATTCACCGATGTAGCTTTAAT
8067078 ATTTTTAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (25 bp):
AAGATTCACCGATGTAGCTTTAATC
Found at i:8067178 original size:125 final size:125
Alignment explanation
Indices: 8066950--8067423 Score: 797
Period size: 125 Copynumber: 3.8 Consensus size: 125
8066940 TGGCTTCTTC
* * ***
8066950 AATCTGTTTAACTGCAATGTCAGGGAAGTGAGATTCACCAATTTGGCTTTAATCTATTCCACTGC
1 AATCTTTTTAACTGCAATGTCAGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGC
*
8067015 ATCGCTTAGGGCGTAAGATTCACTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTT
66 ATCGCTTAGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTT
*
8067075 AATATTTTTAACTGCAATGTCAGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGC
1 AATCTTTTTAACTGCAATGTCAGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGC
*
8067140 ACCGCTT-GGGTCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTT
66 ATCGCTTAGGG-CGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTT
* *
8067200 AATCTTTTTAACTGCAATGTCGGAGAAACAAAATTCACCAATTTGGCTTTAATCTATTCCACTGC
1 AATCTTTTTAACTGCAATGTCAGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGC
* *
8067265 ATCACTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTT
66 ATCGCTTAGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTT
* * *
8067325 AATCTTTTCAACTGCAATGTCGGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTAC
1 AATCTTTTTAACTGCAATGTCAGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGC
8067390 ATCGCTTAGGGCGTAAGATTCGCTGTTGTAGCTT
66 ATCGCTTAGGGCGTAAGATTCGCTGTTGTAGCTT
8067424 CCATATTTTT
Statistics
Matches: 329, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
124 3 0.01
125 323 0.98
126 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (125 bp):
AATCTTTTTAACTGCAATGTCAGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGC
ATCGCTTAGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTT
Found at i:8067487 original size:100 final size:100
Alignment explanation
Indices: 8067402--8069140 Score: 2951
Period size: 100 Copynumber: 17.4 Consensus size: 100
8067392 CGCTTAGGGC
* * * * *
8067402 GTAAGATTCGCTGTTGTAGCTTCCATATTTTTAAATGCAATGTCAGGGAAGTAAGATCCGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
*
8067467 GTAGCTTCAATCTATTCCACTGCAACGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
* * * * *
8067502 GTAAGATTCGCTGTTGTAGCTTCAATCTTTTTAAATGTAATGTCAGGGAAGGAAGATCCGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
*
8067567 GTAGCTTCAATCTGTTCCACTGCAACGCTAGAAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
*
8067602 GTAAGACCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
8067667 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
*
8067702 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCTGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
8067767 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
* * * *
8067802 GTAAGATCCGCTATTGTATCTTCAATATTCTTAATTACAATGTCAGGGAAGTAAGATCCGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
8067867 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
* * * *
8067902 GTAAGATCCGCTATTGTATCTTCAATATTCTTAATTACAATGTCAGGGAAGTAAGATCCGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
* *
8067967 GTAGCTTCAATCTATTCCACTGCAACGCTTGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
* * * * * *
8068002 -TAAGATTCGCCGTTGTGGCCTCAATCTT-TTGATTGCAATGTCAGGGAAGTGAGATCCGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
* *
8068065 GTAGCTTCAATCTATTCCACTACAACGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
**
8068100 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATTTGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
8068165 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
* *
8068200 GTAAGATCCGCTATTGTATCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
*
8068265 GTAGCTTCAATCTGTTCCACTGCAACGCTAGAAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
* *
8068300 GTAAGATCCGCTATTGTATCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
8068365 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
*
8068400 GTAAGATCCACTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
*
8068465 GTAGCTTCAATCTGTTCCACTGCAACGCTAGAAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
*
8068500 GTAAGACCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
8068565 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
*
8068600 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCTGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
8068665 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
* * * *
8068700 GTAAGATCCGCTATTGTATCTTCAATATTCTTAATTACAATGTCAGGGAAGTAAGATCCGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
8068765 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
* * *
8068800 GTAAGATCTGCTGTTGTAGCTTTAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCTGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
8068865 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
* *
8068900 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTACAATGTCAGGGAAGTAAGATCTGCTGTT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
8068965 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
* * *
8069000 GTAAGATCCGCTATTGTATCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTATT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
*
8069065 GTAGCTTCAATCTGTTCCACTGCAATGCTAGGAAA
66 GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
*
8069100 GTAAGTTCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAAT
1 GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAAT
8069141 CTATGGTTTC
Statistics
Matches: 1554, Mismatches: 83, Indels: 4
0.95 0.05 0.00
Matches are distributed among these distances:
98 65 0.04
99 45 0.03
100 1444 0.93
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (100 bp):
GTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTT
GTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAA
Found at i:8071647 original size:9 final size:9
Alignment explanation
Indices: 8071628--8071679 Score: 72
Period size: 9 Copynumber: 5.8 Consensus size: 9
8071618 TTTTATTTGA
8071628 TTTTTGA-T
1 TTTTTGATT
8071636 TTTTTGATT
1 TTTTTGATT
8071645 TTTTTGATTTT
1 TTTTTGA--TT
8071656 TTTTTGA-T
1 TTTTTGATT
8071664 TTTTTGATT
1 TTTTTGATT
8071673 TTTTTGA
1 TTTTTGA
8071680 GTCTAAACTC
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
8 15 0.38
9 16 0.40
11 9 0.22
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.77
Consensus pattern (9 bp):
TTTTTGATT
Found at i:8071658 original size:19 final size:19
Alignment explanation
Indices: 8071611--8071677 Score: 88
Period size: 19 Copynumber: 3.6 Consensus size: 19
8071601 CTATTTTGAC
8071611 TTTGATTTTTTATTTGA-TT
1 TTTGATTTTTT-TTTGATTT
8071630 TTTGA---TTTTTTGATTTT
1 TTTGATTTTTTTTTGA-TTT
8071647 TTTGATTTTTTTTTGATTT
1 TTTGATTTTTTTTTGATTT
8071666 TTTGATTTTTTT
1 TTTGATTTTTTT
8071678 GAGTCTAAAC
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
15 5 0.12
16 3 0.07
17 7 0.16
19 20 0.47
20 8 0.19
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (19 bp):
TTTGATTTTTTTTTGATTT
Found at i:8071659 original size:28 final size:29
Alignment explanation
Indices: 8071611--8071679 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 29
8071601 CTATTTTGAC
8071611 TTTGA-TTTTTT-ATTTGATTTTTGATTT
1 TTTGATTTTTTTGATTTGATTTTTGATTT
*
8071638 TTTGATTTTTTTGATTT-TTTTTTGATTT
1 TTTGATTTTTTTGATTTGATTTTTGATTT
8071666 TTTGATTTTTTTGA
1 TTTGATTTTTTTGA
8071680 GTCTAAACTC
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 5 0.13
28 30 0.77
29 4 0.10
ACGTcount: A:0.13, C:0.00, G:0.12, T:0.75
Consensus pattern (29 bp):
TTTGATTTTTTTGATTTGATTTTTGATTT
Found at i:8072424 original size:17 final size:18
Alignment explanation
Indices: 8072392--8072428 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
8072382 TTTGCACAGT
8072392 ATGATTATGAATGAAAGA
1 ATGATTATGAATGAAAGA
*
8072410 ATGATT-TGGATGAAAGA
1 ATGATTATGAATGAAAGA
8072427 AT
1 AT
8072429 AAAAGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.30
Consensus pattern (18 bp):
ATGATTATGAATGAAAGA
Found at i:8072931 original size:19 final size:20
Alignment explanation
Indices: 8072902--8072950 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
8072892 CACTTCGTGA
* *
8072902 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
8072921 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
8072941 AAATG-AATGC
1 AAATGTAATGC
8072951 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:8074629 original size:4 final size:4
Alignment explanation
Indices: 8074620--8074717 Score: 72
Period size: 4 Copynumber: 22.8 Consensus size: 4
8074610 ATACAACAAC
* * ** *
8074620 AAAT AAAT AAAT AAAT AAACT AAA- ACAT AAAA AAAT GGAT ATAT AAAT
1 AAAT AAAT AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAT
8074668 AAAT AAAT AAAT GAACAT AAAGT AAAAT AAAAT AAAAT AAAAT AAAT AAA
1 AAAT AAAT AAAT -AA-AT AAA-T -AAAT -AAAT -AAAT -AAAT AAAT AAA
8074718 ATAATAATAA
Statistics
Matches: 79, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
3 2 0.03
4 47 0.59
5 25 0.32
6 5 0.06
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:8074698 original size:5 final size:5
Alignment explanation
Indices: 8074664--8074734 Score: 69
Period size: 5 Copynumber: 14.4 Consensus size: 5
8074654 ATGGATATAT
* *
8074664 AAAT- AAAT- AAAT- AAATGA ACATA AAGTA AAATA AAATA AAATA AAAT-
1 AAATA AAATA AAATA AAAT-A AAATA AAATA AAATA AAATA AAATA AAATA
8074711 AAATA AAATA ATAATA ACAATA AA
1 AAATA AAATA A-AATA A-AATA AA
8074735 GGAAAATAGA
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
4 16 0.28
5 29 0.50
6 13 0.22
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:8075092 original size:12 final size:12
Alignment explanation
Indices: 8075077--8075108 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
8075067 AAAATAAAAC
8075077 TAATAATAATAG
1 TAATAATAATAG
8075089 TAATAATAATAG
1 TAATAATAATAG
8075101 TAATAATA
1 TAATAATA
8075109 TGAAATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.34
Consensus pattern (12 bp):
TAATAATAATAG
Found at i:8080308 original size:123 final size:122
Alignment explanation
Indices: 8080006--8080351 Score: 514
Period size: 125 Copynumber: 2.8 Consensus size: 122
8079996 TGTAGCAAAA
* *
8080006 GCGCATTT-ACAAATTCTTCTCAAATAGCATCATCCTAGAAGCGATTTTATACTATTTGCTCAGA
1 GCGCATTTCACAAATTCTTCTCAAATAACATCATGCTAGAAGCGATTTTATACTATTTGCTCAGA
* *
8080070 AACGTCAAAAAAAATTATTTCTTCCATGACCTACTGTAGCAAAAGCGCGTCCACGATG
66 AACGTC-AAAAAAATTATTTCTTCCATGACCTACTGTAGCAAAAGCGCATCCACGAGG
* *
8080128 GCGCAATTTTCTCAAATTCTTCTCAAATAACATCATGGTAGAAGCGATTTTATACTATTTGCTCA
1 GCGC-A-TTTCACAAATTCTTCTCAAATAACATCATGCTAGAAGCGATTTTATACTATTTGCTCA
* *
8080193 GAAACGTCAAAAAAATTATTTCTTCCATTACCTACTGTAGCAAAAGCGCATCCACTAGG
64 GAAACGTCAAAAAAATTATTTCTTCCATGACCTACTGTAGCAAAAGCGCATCCACGAGG
* *
8080252 GCGCGATTTCACAAATTCTTCTTAAATAACATCATGCTAGAAGCGATTTTATACTATTTGATCAG
1 GCGC-ATTTCACAAATTCTTCTCAAATAACATCATGCTAGAAGCGATTTTATACTATTTGCTCAG
** *
8080317 AAACGTCAACTCGAAATTATTTCTTCCAGGACCTA
65 AAACGTCAA--AAAAATTATTTCTTCCATGACCTA
8080352 AAAACCCTAA
Statistics
Matches: 202, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
122 4 0.02
123 65 0.32
124 55 0.27
125 78 0.39
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (122 bp):
GCGCATTTCACAAATTCTTCTCAAATAACATCATGCTAGAAGCGATTTTATACTATTTGCTCAGA
AACGTCAAAAAAATTATTTCTTCCATGACCTACTGTAGCAAAAGCGCATCCACGAGG
Found at i:8081632 original size:19 final size:19
Alignment explanation
Indices: 8081600--8081647 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
8081590 TTGGAAATTC
8081600 AATTTAAATAATAAAATATA
1 AATTT-AATAATAAAATATA
*
8081620 AATTTAATTATAAAATATA
1 AATTTAATAATAAAATATA
8081639 AATTTAATA
1 AATTTAATA
8081648 TTTTATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 21 0.81
20 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
AATTTAATAATAAAATATA
Found at i:8081650 original size:26 final size:24
Alignment explanation
Indices: 8081609--8081656 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
8081599 CAATTTAAAT
8081609 AATAAAATATAAATTTAATTATAA
1 AATAAAATATAAATTTAATTATAA
* *
8081633 AATATAAATTTAATATTTTATTAT
1 AATA-AAATATAA-ATTTAATTAT
8081657 TTTTTAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 7 0.35
26 9 0.45
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
AATAAAATATAAATTTAATTATAA
Found at i:8084132 original size:4 final size:4
Alignment explanation
Indices: 8084123--8084177 Score: 110
Period size: 4 Copynumber: 13.8 Consensus size: 4
8084113 ATTTTGTTGT
8084123 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
8084171 ATAC ATA
1 ATAC ATA
8084178 TCTTTTTGCA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 51 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:8097976 original size:33 final size:33
Alignment explanation
Indices: 8097924--8097986 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
8097914 GATCAACTTT
**
8097924 GTTATTTTACTATTGTATAATACTAAAAACAAA
1 GTTATTTTACTATCATATAATACTAAAAACAAA
*
8097957 GTTATTTTTCTATCATATAATACTAAAAAC
1 GTTATTTTACTATCATATAATACTAAAAAC
8097987 CTAACGGTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (33 bp):
GTTATTTTACTATCATATAATACTAAAAACAAA
Found at i:8101054 original size:3 final size:3
Alignment explanation
Indices: 8100986--8101034 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
8100976 AAATGAAAAT
* * * *
8100986 ATA ATG ATA ATA ACA ATA ATA TTA ATA ATA ATA CTA ATA ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8101033 AT
1 AT
8101035 TTATTATTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:8104399 original size:99 final size:99
Alignment explanation
Indices: 8102661--8104369 Score: 2060
Period size: 99 Copynumber: 17.3 Consensus size: 99
8102651 ATCTATTCAT
* * * *
8102661 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAATTGCAATGTCAGGGAAGCAAGATT
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCT-TTTAATTGCAATGTCGGGGAAGCAAGATT
* * * *
8102726 CGCCGTTGTAGCTTTAATCTATTCCATTGCACCAC
65 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * *
8102761 CAGGAAAGTAAGATTCGCCGTTGAGGCCTCAATCTTTTAATTGCAATGTCGAGAAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* *
8102826 ACCGTTGTAGCTTCAATCTGTTCCATTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
** * * * * * *
8102860 CAGAAAAGTAAGATTTGTCGTTGTGGCCTCGATCTTTTAATTGTAATGACAGGGAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
*
8102925 GTCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * ** *
8102959 CAAGGAAGTAAGATTCACCGTCGT----TTGATCTTTTAATCGCAATGTCGGGGAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
** *
8103020 GCTATTGTAGCTTCAATCTATTCCACTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* ** * *
8103054 CAGGGAAGTAAGATTCACCGTTGTGGTTTCAATATTTTTAATTGCAATGTCGGAGAAGCAAGATT
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAAT-CTTTTAATTGCAATGTCGGGGAAGCAAGATT
* * *
8103119 CGCCGTTGTAGCTTCAATCTGTCCCACTACACTGC
65 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * * *
8103154 TAGGGAAGTAAGATTCGTCGTTGTGGCTTCAATTTTTTTAA-TGCAATGTCGGGGAAGTAAGATT
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAA-TCTTTTAATTGCAATGTCGGGGAAGCAAGATT
* * * * *
8103218 TGTCATTGTAGCTTCAATCTGTCCCACTGCACTGC
65 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * * *
8103253 CAGGGAAGTAAGATTCGCTGTTGTCGCTTCAATCTTTTTAATTGCAATGTCGGGAAAACAAGATT
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATT
* * *
8103318 CACCGTTGTAGCTTTAATCTGTTCCACTACACCGC
65 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * *
8103353 CAGGAAAGTAAGATTCACCGTTGTGACCTCAATCTTTTAATTGCAATGTCGAGGAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
*
8103418 GCCGTTGTAGCTTCAATCTGTTTCACTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
** * *
8103452 CAGAAAAGTAAGATTTGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* * * *
8103517 ACCGTTGTAGCTTTAATTTGTTCCACTGCAGCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
** * * * *
8103551 CAGGGAAGTAAGATTCGCTATTGTGGCATCGATCTTTCAATTGCAATGTCGGGAAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* *
8103616 GCCGTTCTAACTTCAATCTGTTCCACTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * *
8103650 CAGGGAAATAAGATTTGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCAGGGAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* ** *
8103715 GCCGTTGTAGTTTCAATCTGTTCCTTTGCACCAC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
** * * * **
8103749 CAGAAAAGTAATATTCGCCGTTGTGGCCTCAATCTTTTAATTACAATGTCGAGGAAGTGAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* * * *
8103814 ACCGTTGTAGCTTCAATCTATTCTACTGCACTGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * ** * *
8103848 CAGGGAAATAAGATTCGCTGTTGTGGCCTTGATCTTTTAATTGCAATGCCGAGGAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* * *
8103913 ACCGTTGTAGCTTCAATCTGTTCTACTGCACCAC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * * * *
8103947 TAGGGAAATAAGATTCGCCGTTATGGCCTCGATCTTTTAATTGCAATGTAGGGGAAGTAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* **
8104012 GCCGTTGTAGCTTCAATTTGTTCCACTATACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * * * * *
8104046 TAGGGAAATAAGATTCACCGTTGTGACCTTAATCTTTTAATTGCAATGTCGGGGAAACGAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* * **
8104111 ACCGTTGTAGCTTCAATCTATTCCACTGCATTGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * * * * * *
8104145 CAGGGAAGTAAGATTCGTCGTTATGACCTTAATCTTTTAATTACAATGCCGGGGAAGCGAGATTT
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
** *
8104210 GTTGTTGTAGCTTCAATCTATTCCACTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * *
8104244 CAGGGAAATAAGATTCACCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTT
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
*
8104309 GCCTTTGTAGCTTCAATCTGTTCCACTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
*
8104343 CAGGGAAGTAAGATTCACCGTTGTGGC
1 CAGGGAAGTAAGATTCGCCGTTGTGGC
8104370 TTCGATCTGC
Statistics
Matches: 1377, Mismatches: 224, Indels: 17
0.85 0.14 0.01
Matches are distributed among these distances:
95 84 0.06
98 1 0.00
99 1094 0.79
100 197 0.14
101 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (99 bp):
CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
Found at i:8105380 original size:108 final size:107
Alignment explanation
Indices: 8105181--8105398 Score: 258
Period size: 108 Copynumber: 2.0 Consensus size: 107
8105171 TTTTAACATT
* * *
8105181 TGAAAAAGATTATCACGATGGACAAACAAAATGATATTGAGAACAAATCTCAAAATGAATAAGTT
1 TGAAAAAGATTATCACAATGGACAAACAAAATGATATTGAGAACAAAGCTCAAAATGAATAAATT
* ** * * *
8105246 AATCAAGGTAGCAAATTTTGTTAAGATACGAACTGAATAAGA
66 AATCAAGATAGCAAATTTTGCCAAGATACAAAATAAATAAGA
** * * * **
8105288 TGAAAAAGATTATCACAATGGACAAGATGAAAT-TTTTTAGAGAGCAAAGCTTGAAATGAATAAA
1 TGAAAAAGATTATCACAATGGACAA-ACAAAATGATATT-GAGAACAAAGCTCAAAATGAATAAA
*
8105352 TTAATCAAGATAGCAAATTTTGCCAAGATTCAAAATAAATAAGA
64 TTAATCAAGATAGCAAATTTTGCCAAGATACAAAATAAATAAGA
8105396 TGA
1 TGA
8105399 CGACAGGTAC
Statistics
Matches: 92, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
107 27 0.29
108 65 0.71
ACGTcount: A:0.49, C:0.10, G:0.17, T:0.25
Consensus pattern (107 bp):
TGAAAAAGATTATCACAATGGACAAACAAAATGATATTGAGAACAAAGCTCAAAATGAATAAATT
AATCAAGATAGCAAATTTTGCCAAGATACAAAATAAATAAGA
Found at i:8116894 original size:20 final size:19
Alignment explanation
Indices: 8116848--8116894 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
8116838 CATAAAAATT
8116848 TAAAA-ATGTATATAGATA
1 TAAAATATGTATATAGATA
* *
8116866 TATAGATATGTATATAAGTTA
1 TA-AAATATGTATAT-AGATA
8116887 TAAAATAT
1 TAAAATAT
8116895 AAAAATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 2 0.09
19 2 0.09
20 13 0.57
21 6 0.26
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (19 bp):
TAAAATATGTATATAGATA
Found at i:8116965 original size:21 final size:21
Alignment explanation
Indices: 8116939--8116983 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8116929 TTATAAAAAT
8116939 TAAAAAAATATGTACGTATATA
1 TAAAAAAA-ATGTACGTATATA
* *
8116961 TAAAAAAAATGTATGTATGTA
1 TAAAAAAAATGTACGTATATA
8116982 TA
1 TA
8116984 CACATATAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.53, C:0.02, G:0.11, T:0.33
Consensus pattern (21 bp):
TAAAAAAAATGTACGTATATA
Found at i:8117085 original size:3 final size:3
Alignment explanation
Indices: 8117065--8117112 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
8117055 AAATGAAAAT
* * * *
8117065 ATA ATG ATA ATA AAA ATA ATA TTA ATA ATA ATA CTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8117113 CAATTTATTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8119036 original size:29 final size:29
Alignment explanation
Indices: 8119004--8119060 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
8118994 TTGAAATTTT
*
8119004 AAAATGTT-CATAAAGTTCTAAAAGAAATA
1 AAAAT-TTGCATAAAGTTCTAAAAAAAATA
*
8119033 AAAATTTGCTTAAAGTTCTAAAAAAAAT
1 AAAATTTGCATAAAGTTCTAAAAAAAAT
8119061 CTAAAAGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.54, C:0.07, G:0.09, T:0.30
Consensus pattern (29 bp):
AAAATTTGCATAAAGTTCTAAAAAAAATA
Found at i:8123429 original size:44 final size:44
Alignment explanation
Indices: 8123361--8123881 Score: 335
Period size: 44 Copynumber: 11.7 Consensus size: 44
8123351 GGTTTTAGTT
** *
8123361 TGCTCCACTGCAACTTCAATGAGATAAGACTTGTATCTTCAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAATC
* ** ** *
8123405 TACTCCACTGCAACTTCAGGGAGATAAGGTTTGATATGATAAGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TATCTTCA-ATC
* * * * * * *
8123451 TAATTCGACCTACTGCAACTTTAGAGG-TATATGA-TT-CATCGTTTTAATC
1 ---TGC-TCC-ACTGCAACTTCAG-GGAGATAAGACTTGTATC--TTCAATC
* * *
8123500 CGCTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAGCTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTATCTTCAATC
* * * *
8123544 TGTTCCACTGCAACTTCAGGGAGATAAGACTCGCTATTTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TATCTTCAATC
* * * * *
8123589 TGCCCCACTGCAAGTCCA-GGAGGATAAGACTTGCTTTCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGA-GATAAGACTTG-TATCTTCAATC
* * *
8123634 TGCTCCACTGCAACTTCAGGGAAATAAGACTTGTAACTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAATC
* * * *
8123678 CGCTCCACTGCAACTTCAGGGAGATAGGA-TTAT-TGGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAT--CTTCAATC
* * ** *
8123722 TGCTCCACTGCAACTTCAAGGATATAAGA-TTCACCATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTT--GTATCTTCAATC
* * * *
8123767 TGCCCCACTGCAACTTCAGGGGGATAAGACTTGTTTTCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TATCTTCAATC
* * * *
8123812 TACTCCACTGTAACTTCAGGGAGATAAGACTTG-AT-AT-GATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAATC
* **
8123853 TGCTCTACTGCAACTTCAAAGAGATAAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGA
8123882 TCGATAATTT
Statistics
Matches: 370, Mismatches: 83, Indels: 51
0.73 0.16 0.10
Matches are distributed among these distances:
41 26 0.07
42 1 0.00
43 6 0.02
44 151 0.41
45 144 0.39
46 10 0.03
47 1 0.00
48 2 0.01
49 5 0.01
50 6 0.02
51 16 0.04
52 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAATC
Found at i:8123685 original size:134 final size:132
Alignment explanation
Indices: 8123361--8123843 Score: 370
Period size: 134 Copynumber: 3.6 Consensus size: 132
8123351 GGTTTTAGTT
** * * *
8123361 TGCTCCACTGCAACTTCAATGAGATAAGACTTGTATCTTCAACCTACTCCACTGCAACTTCAGGG
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
** * * * * * *
8123426 AGATAAGGTTTGATATGATAAGATCTAAT-TCGACCTACTGCAACTTTAGAGG-TATATGATTCA
66 AGATAAGACTT-AT-TG-T----TC-AATCT-GCCCCACTGCAACGTCA-AGGAGATAAGATTCA
* * * *
8123489 TCGT-TTTAATC
121 CCATCTTCAGTC
* * * *
8123500 CGCTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAGCTTCAATCTGTTCCACTGCAACTTCAGG
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTCAATCTGCTCCACTGCAACTTCAGG
* * * **
8123564 GAGATAAGACTCGCTATT-TTCAGTCTGCCCCACTGCAA-GTCCAGGAGGATAAGACTT-GCTTT
65 GAGATAAGACT---TATTGTTCAATCTGCCCCACTGCAACGTCAAGGA-GATAAGA-TTCACCAT
8123626 CTTCAGTC
125 CTTCAGTC
* * *
8123634 TGCTCCACTGCAACTTCAGGGAAATAAGACTTGTAACTTTAATCCGCTCCACTGCAACTTCAGGG
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
* * * * *
8123699 AGATAGGA-TTATTGGCTTTAATCTGCTCCACTGCAACTTCAAGGATATAAGATTCACCATCTTC
66 AGATAAGACTTATT-G-TTCAATCTGCCCCACTGCAACGTCAAGGAGATAAGATTCACCATCTTC
8123763 AGTC
129 AGTC
* * ** * * *
8123767 TGCCCCACTGCAACTTCAGGGGGATAAGACTTGTTTTCTTCAGTCTACTCCACTGTAACTTCAGG
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGG
8123832 GAGATAAGACTT
65 GAGATAAGACTT
8123844 GATATGATCT
Statistics
Matches: 275, Mismatches: 52, Indels: 38
0.75 0.14 0.10
Matches are distributed among these distances:
130 4 0.01
131 3 0.01
132 3 0.01
133 82 0.30
134 110 0.40
135 4 0.01
138 3 0.01
139 62 0.23
140 1 0.00
141 2 0.01
142 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (132 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
AGATAAGACTTATTGTTCAATCTGCCCCACTGCAACGTCAAGGAGATAAGATTCACCATCTTCAG
TC
Found at i:8123686 original size:178 final size:178
Alignment explanation
Indices: 8123493--8123844 Score: 551
Period size: 178 Copynumber: 2.0 Consensus size: 178
8123483 GATTCATCGT
*
8123493 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCTGTTCCACTGCAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCTGCTCCACTGCAAC
* * * * *
8123558 TTCAGGGAGATAAGACTCGCTATTTTCAGTCTGCCCCACTGCAAGTCCAGGAGGATAAGACTTGC
66 TTCAAGGAGATAAGACTCACCATCTTCAGTCTGCCCCACTGCAACTCCAGGAGGATAAGACTTGC
*
8123623 TTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTTGTAAC
131 TTTCTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGACTTGTAAC
* * *
8123671 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCTGCTCCACTGCAAC
* * * * *
8123736 TTCAAGGATATAAGATTCACCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGT
66 TTCAAGGAGATAAGACTCACCATCTTCAGTCTGCCCCACTGCAACTCCAGGAGGATAAGACTTGC
* *
8123801 TTTCTTCAGTCTACTCCACTGTAACTTCAGGGAGATAAGACTTG
131 TTTCTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGACTTG
8123845 ATATGATCTG
Statistics
Matches: 157, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
178 157 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (178 bp):
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCTGCTCCACTGCAAC
TTCAAGGAGATAAGACTCACCATCTTCAGTCTGCCCCACTGCAACTCCAGGAGGATAAGACTTGC
TTTCTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGACTTGTAAC
Found at i:8123843 original size:45 final size:45
Alignment explanation
Indices: 8123501--8123881 Score: 325
Period size: 45 Copynumber: 8.6 Consensus size: 45
8123491 GTTTTAATCC
* * *
8123501 GCTCCACTGCAACTTCAGGGAGATAGGA-TTAG-TAGCTTCAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTT-GTTATCTTCAGTCT
* * * *
8123545 GTTCCACTGCAACTTCAGGGAGATAAGACTCGCTATTTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATCTTCAGTCT
* * *
8123590 GCCCCACTGCAAGTCCA-GGAGGATAAGACTTGCTT-TCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGA-GATAAGACTTG-TTATCTTCAGTCT
* * * * *
8123635 GCTCCACTGCAACTTCAGGGAAATAAGACTTG-TAACTTTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATCTTCAGTCT
* * ** * *
8123679 GCTCCACTGCAACTTCAGGGAGATAGGA-TTATTGGCTTTAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATCTTCAGTCT
* * ***
8123723 GCTCCACTGCAACTTCAAGGATATAAGA-TTCACCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTT-GTTATCTTCAGTCT
* * *
8123768 GCCCCACTGCAACTTCAGGGGGATAAGACTTGTTTTCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATCTTCAGTCT
* * * *
8123813 ACTCCACTGTAACTTCAGGGAGATAAGACTTG--AT-ATGA-TCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATCTTCAGTCT
* **
8123854 GCTCTACTGCAACTTCAAAGAGATAAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGA
8123882 TCGATAATTT
Statistics
Matches: 272, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
41 26 0.10
42 2 0.01
43 4 0.01
44 98 0.36
45 136 0.50
46 6 0.02
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (45 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATCTTCAGTCT
Done.