Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 30 of 230
Found at i:8124046 original size:50 final size:50
Alignment explanation
Indices: 8123967--8124620 Score: 402
Period size: 50 Copynumber: 13.1 Consensus size: 50
8123957 TGCAATGTCG
* ** * *
8123967 GGGAAGTAAGATTTGCTATTGTAGATTCAATCTGTTCCACTACACAGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACAGCCA
* * * * ** * * *
8124017 GGGAAGTAAAATTCACTGTTGTAGCTTCAATCTTTTTAACTGTA-ATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACA-GCCA
* * * *
8124067 GGGAAGCAAGATTCGCTGTTGTAACTTCAATCTGTTCCACTGCACCGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACAGCCA
* * * * * * ** * *
8124117 AGGAGGTAAGATTTGCCATTGTGGCTTCAATCTTTTTAACTGCA-ATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACA-GCCA
* * * * * * *
8124167 GGGAAGCAAGATTCGCTGTTGTACCTTTAATCTGTTCCATTGTACCGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACAGCCA
* * * ** * * *
8124217 GGGAAGTAAGACTCGCCGTTGTGGCTTCAATCTTTTTAATTGCA-ATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACA-GCCA
* * * *
8124267 GGGAAGCAAGATTCGTCGTTGTAGCTTCAATCTGTTCCACTGTACTGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACAGCCA
** * * * * ** * *
8124317 GGGAAGTAAGATTTACCATTGTGGCTTCAATATTTTTAATTGCA-ATGTCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACA-GCCA
* * * * ** *
8124367 GAGAAGCAAGATTTGCCGTTGTAGCTTCAATCTGTCCCACTATACTGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACAGCCA
* * * ** * * *
8124417 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATTTTTTTAATTGCA-ATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACA-GCCA
* * * *
8124467 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTCCCACTGCACTGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACAGCCA
* * * ** * * *
8124517 GGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCA-ATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACA-GCCA
** * * * *
8124567 GGGAAACAAGATTTGCCGTTGTAGCTTTAATCTGTTCCACTGCACCGTCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACAGCCA
8124617 GGGA
1 GGGA
8124621 TGCACCGCCA
Statistics
Matches: 433, Mismatches: 159, Indels: 24
0.70 0.26 0.04
Matches are distributed among these distances:
49 1 0.00
50 432 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (50 bp):
GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACAGCCA
Found at i:8124089 original size:100 final size:100
Alignment explanation
Indices: 8123952--8124771 Score: 977
Period size: 100 Copynumber: 8.1 Consensus size: 100
8123942 TTTAGTCTAA
* * * * * * *
8123952 TTAACTGCAATGTCGGGGAAGTAAGATTTGCTATTGTAGATTCAATCTGTTCCACTACACAGCCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
* * * *
8124017 GGGAAGTAAAATTCACTGTTGTAGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * *
8124052 TTAACTGTAATGTCGGGGAAGCAAGATTCGCTGTTGTAACTTCAATCTGTTCCACTGCACCGCCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
* * * *
8124117 AGGAGGTAAGATTTGCCATTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * * *
8124152 TTAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTACCTTTAATCTGTTCCATTGTACCGCCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
*
8124217 GGGAAGTAAGACTCGCCGTTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
*
8124252 TTAATTGCAATGTCGGGGAAGCAAGATTCG-TCGTTGTAGCTTCAATCTGTTCCACTGTACTGCC
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCT-GTTGTAGCTTCAATCTGTTCCACTGCACTGCC
** * *
8124316 AGGGAAGTAAGATTTACCATTGTGGCTTCAATATTT
65 AGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * * **
8124352 TTAATTGCAATGTCAGAGAAGCAAGATTTGCCGTTGTAGCTTCAATCTGTCCCACTATACTGCCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
*
8124417 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATTTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * *
8124452 TTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTCCCACTGCACTGCCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
*
8124517 GGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * *
8124552 TTAATTGCAATGTCGGGGAAACAAGATTTGCCGTTGTAGCTTTAATCTGTTCCACTGCACCGTCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCA----C-
8124617 GGGATGCACCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATC--T
61 ----T-----GCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * *
8124664 TT--TTGCAATGTTGGGGAAGCAAGATTCACTGTTGTAGCTTGAATCTATTCCATTGCA-TCGCC
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACT-GCC
*
8124726 AGGGAAGTAAGATTCGCCGTTGTGACTTCAATCTTT
65 AGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
8124762 TTAATTGCAA
1 TTAATTGCAA
8124772 CCTCAAGGGT
Statistics
Matches: 631, Mismatches: 69, Indels: 40
0.85 0.09 0.05
Matches are distributed among these distances:
96 36 0.06
98 3 0.00
99 1 0.00
100 504 0.80
104 1 0.00
109 1 0.00
110 47 0.07
112 3 0.00
114 35 0.06
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (100 bp):
TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
Found at i:8124729 original size:110 final size:112
Alignment explanation
Indices: 8124507--8124730 Score: 308
Period size: 110 Copynumber: 2.0 Consensus size: 112
8124497 TCTGTCCCAC
*
8124507 TGCACTGCCAGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAA
1 TGCACCGCCAGGAAAGTAAGATTCGCCGTTGTGGCTTCAATC-TTTT-ATTGCAATGTCGGGGAA
** * * *
8124572 ACAAGATTTGCCGTTGTAGCTTTAATCTGTTCCACTGCACCGTCAGGGA
64 ACAAGATTCACCGTTGTAGCTTGAATCTATTCCACTGCACCGCCAGGGA
* * *
8124621 TGCACCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATC-TTT-TTGCAATGTTGGGGAAGC
1 TGCACCGCCAGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTATTGCAATGTCGGGGAAAC
* * *
8124684 AAGATTCACTGTTGTAGCTTGAATCTATTCCATTGCATCGCCAGGGA
66 AAGATTCACCGTTGTAGCTTGAATCTATTCCACTGCACCGCCAGGGA
8124731 AGTAAGATTC
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
110 55 0.56
112 3 0.03
114 40 0.41
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.30
Consensus pattern (112 bp):
TGCACCGCCAGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTATTGCAATGTCGGGGAAAC
AAGATTCACCGTTGTAGCTTGAATCTATTCCACTGCACCGCCAGGGA
Found at i:8124748 original size:50 final size:46
Alignment explanation
Indices: 8124621--8124763 Score: 137
Period size: 46 Copynumber: 3.0 Consensus size: 46
8124611 CCGTCAGGGA
* *
8124621 TGCACCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTT
1 TGCATCGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTT
*** * * * *
8124667 TGCAAT-GTTGGGGAAGCAAGATTCACTGTTGTAGCTTGAATCTATTCCAT
1 TGC-ATCGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TT---T
8124717 TGCATCGCCAGGGAAGTAAGATTCGCCGTTGT-GACTTCAATCTTTT
1 TGCATCGCCAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTTTT
8124763 T
1 T
8124764 AATTGCAACC
Statistics
Matches: 74, Mismatches: 16, Indels: 14
0.71 0.15 0.13
Matches are distributed among these distances:
46 34 0.46
47 3 0.04
49 5 0.07
50 32 0.43
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.33
Consensus pattern (46 bp):
TGCATCGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTT
Found at i:8124769 original size:50 final size:50
Alignment explanation
Indices: 8124621--8124770 Score: 134
Period size: 50 Copynumber: 3.1 Consensus size: 50
8124611 CCGTCAGGGA
* *
8124621 TGCACCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTGCAA-
1 TGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGACTTCAATCTTTTT--AAT
* * * * * * **
8124672 TG--TTG---GGGAAGCAAGATTCACTGTTGT-AGCTTGAATCTATTCCAT
1 TGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGA-CTTCAATCTTTTTAAT
8124717 TGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGACTTCAATCTTTTTAAT
1 TGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGACTTCAATCTTTTTAAT
8124767 TGCA
1 TGCA
8124771 ACCTCAAGGG
Statistics
Matches: 73, Mismatches: 18, Indels: 17
0.68 0.17 0.16
Matches are distributed among these distances:
44 1 0.01
45 2 0.03
46 29 0.40
47 2 0.03
49 1 0.01
50 35 0.48
51 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (50 bp):
TGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGACTTCAATCTTTTTAAT
Found at i:8125673 original size:24 final size:23
Alignment explanation
Indices: 8125638--8125690 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
8125628 TGACCTTTCC
* *
8125638 TTTTTCTTTTTTTGTTCTTC-TTT
1 TTTTTCTATTTTTCTT-TTCGTTT
8125661 TCTTTTCTATTTTTCTTTTCGTTT
1 T-TTTTCTATTTTTCTTTTCGTTT
8125685 TTTTTC
1 TTTTTC
8125691 AAGTGAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 9 0.35
24 17 0.65
ACGTcount: A:0.02, C:0.15, G:0.04, T:0.79
Consensus pattern (23 bp):
TTTTTCTATTTTTCTTTTCGTTT
Found at i:8130341 original size:120 final size:120
Alignment explanation
Indices: 8130083--8130326 Score: 470
Period size: 120 Copynumber: 2.0 Consensus size: 120
8130073 AATCAGTGCA
*
8130083 ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGCCAAATTATACCATTATCTCACAC
1 ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGCCAAATTATACCATCATCTCACAC
8130148 ATAGAATGACCCACCTATCATACTTCTAAATTATGTCACTTAATAGACCAAATAT
66 ATAGAATGACCCACCTATCATACTTCTAAATTATGTCACTTAATAGACCAAATAT
8130203 ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGCCAAATTATACCATCATCTCACAC
1 ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGCCAAATTATACCATCATCTCACAC
*
8130268 ATAGAATGACCCACCTATCATACTTCTCAATTATGTCACTTAATAGACCAAATAT
66 ATAGAATGACCCACCTATCATACTTCTAAATTATGTCACTTAATAGACCAAATAT
8130323 ACCT
1 ACCT
8130327 AACCTTTATC
Statistics
Matches: 122, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 122 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (120 bp):
ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGCCAAATTATACCATCATCTCACAC
ATAGAATGACCCACCTATCATACTTCTAAATTATGTCACTTAATAGACCAAATAT
Found at i:8134860 original size:50 final size:50
Alignment explanation
Indices: 8134747--8134944 Score: 189
Period size: 50 Copynumber: 3.8 Consensus size: 50
8134737 ATTTGGGTAA
* * * *
8134747 AGAGATCCCATGTAAGACCATGTCTGAGACATGGAATTGGCATCATTGAGATTAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA---AGA-T--G
* *
8134803 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
** * * *
8134853 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
** * * * *
8134903 AGAACTCTCATGCAAGACCATATCTGGGATATGGCATTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
8134945 GTACAAGAAA
Statistics
Matches: 120, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
50 77 0.64
52 1 0.01
53 3 0.03
56 39 0.32
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
Found at i:8145782 original size:26 final size:26
Alignment explanation
Indices: 8145746--8145799 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
8145736 TTTCCACAAG
8145746 AAAATTTTAATTTTTTTGGTACCTAT
1 AAAATTTTAATTTTTTTGGTACCTAT
8145772 AAAATTTTAATTTTTTTGGTACCTAT
1 AAAATTTTAATTTTTTTGGTACCTAT
8145798 AA
1 AA
8145800 GCTCCAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (26 bp):
AAAATTTTAATTTTTTTGGTACCTAT
Found at i:8146799 original size:16 final size:16
Alignment explanation
Indices: 8146774--8146806 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8146764 TATTTTTTAA
8146774 AAAAATTATAATATTTT
1 AAAAATTATAA-ATTTT
8146791 AAAAA-TATAAATTTT
1 AAAAATTATAAATTTT
8146806 A
1 A
8146807 GAATTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 5 0.31
17 5 0.31
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAAAATTATAAATTTT
Found at i:8146857 original size:20 final size:19
Alignment explanation
Indices: 8146801--8146872 Score: 92
Period size: 20 Copynumber: 3.7 Consensus size: 19
8146791 AAAAATATAA
8146801 ATTTTAGAATTTTTATAAA-T
1 ATTTT-GAATTTTTA-AAATT
* *
8146821 ATTTAGAATTTTAAAAATT
1 ATTTTGAATTTTTAAAATT
8146840 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTT-AAAATT
8146860 ATTTTGAATTTTT
1 ATTTTGAATTTTT
8146873 TTTTAATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
18 3 0.07
19 20 0.43
20 23 0.50
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (19 bp):
ATTTTGAATTTTTAAAATT
Found at i:8148997 original size:16 final size:15
Alignment explanation
Indices: 8148972--8149010 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
8148962 ATATATATTT
8148972 AAAT-TTATAAAATA
1 AAATATTATAAAATA
8148986 AAATCATTATAAAATA
1 AAAT-ATTATAAAATA
8149002 AAATATTAT
1 AAATATTAT
8149011 GGAACTATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.17
15 5 0.22
16 14 0.61
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (15 bp):
AAATATTATAAAATA
Found at i:8149334 original size:22 final size:22
Alignment explanation
Indices: 8149306--8149372 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
8149296 TCTCTGATTA
*
8149306 TTAGCACGTCATTGCTCTCTGT
1 TTAGCACATCATTGCTCTCTGT
8149328 TTAGCACATC-TATGCTCTCTGT
1 TTAGCACATCAT-TGCTCTCTGT
* * * *
8149350 ATAGCACTTTAGTGCTCTCTGT
1 TTAGCACATCATTGCTCTCTGT
8149372 T
1 T
8149373 CATTAGTGCT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 36 0.97
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.42
Consensus pattern (22 bp):
TTAGCACATCATTGCTCTCTGT
Found at i:8158154 original size:37 final size:37
Alignment explanation
Indices: 8158104--8158182 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
8158094 TTATTACGAA
* * *
8158104 GTCTTACCCGGACATAA-TCTCCACTCGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
8158141 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
8158178 GTCTT
1 GTCTT
8158183 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:8158370 original size:47 final size:47
Alignment explanation
Indices: 8158300--8158739 Score: 709
Period size: 47 Copynumber: 9.3 Consensus size: 47
8158290 CCCTTCGGGA
* * * * * *
8158300 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
8158347 CCTGTCACATATATACACCTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8158394 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
8158441 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8158488 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8158535 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
8158582 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8158629 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8158676 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8158725 CTTATCACATATATA
1 CTTATCACATATATA
8158740 TATTATTCAA
Statistics
Matches: 371, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 325 0.88
49 46 0.12
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:8165778 original size:21 final size:21
Alignment explanation
Indices: 8165754--8165795 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8165744 TAAGTGTCAC
8165754 AATT-AAAATGGATATTAATTT
1 AATTGAAAATGGAT-TTAATTT
* *
8165775 AATTGATAATTGATTTAATTT
1 AATTGAAAATGGATTTAATTT
8165796 TTTTATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (21 bp):
AATTGAAAATGGATTTAATTT
Found at i:8167545 original size:14 final size:15
Alignment explanation
Indices: 8167522--8167577 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
8167512 ACAATATATT
8167522 AACATAAATAACTAA
1 AACATAAATAACTAA
** *
8167537 AACAT-AATATTTCA
1 AACATAAATAACTAA
*
8167551 AATATAAATAACTAA
1 AACATAAATAACTAA
*
8167566 AATATAATATAA
1 AACATAA-ATAA
8167578 AGTAAAAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
14 10 0.31
15 18 0.56
16 4 0.12
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (15 bp):
AACATAAATAACTAA
Found at i:8167817 original size:21 final size:21
Alignment explanation
Indices: 8167779--8167818 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8167769 TGACAGATCA
*
8167779 TAGAAAAAAAAACCAAAAATC
1 TAGAAAAAAAAAACAAAAATC
*
8167800 TAGAAAAAAAAAAGAAAAA
1 TAGAAAAAAAAAACAAAAA
8167819 AAATTAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.78, C:0.07, G:0.07, T:0.07
Consensus pattern (21 bp):
TAGAAAAAAAAAACAAAAATC
Found at i:8175328 original size:20 final size:19
Alignment explanation
Indices: 8175305--8175364 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
8175295 TATATTTTTT
* *
8175305 AAAAATTATAAAAATTTCAAA
1 AAAAATT-TAAAAATAT-ATA
*
8175326 AAAAATCTAAAATATATATA
1 AAAAATTTAAAA-ATATATA
8175346 AAAAATTTAAAAATA-ATA
1 AAAAATTTAAAAATATATA
8175364 A
1 A
8175365 TTTTCTAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
18 4 0.12
19 3 0.09
20 18 0.53
21 9 0.26
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAAATTTAAAAATATATA
Found at i:8176788 original size:20 final size:20
Alignment explanation
Indices: 8176754--8176795 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8176744 AACTATTTAA
** *
8176754 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
8176774 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
8176794 AT
1 AT
8176796 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:8181720 original size:50 final size:51
Alignment explanation
Indices: 8181645--8181777 Score: 180
Period size: 50 Copynumber: 2.6 Consensus size: 51
8181635 GTGAAGTTGC
*
8181645 TAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-ATG-A
1 TAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGATA-GCA
* * * *
8181695 TAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCT
1 TAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGATAGCA
* *
8181746 TCGATCACGTGTGTAGTACTATGTGCAGGCTA
1 TAGGTCACGTGTGTAGTACTATGTGCAGGCTA
8181778 TGTGAACCGA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
50 43 0.60
51 29 0.40
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (51 bp):
TAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGATAGCA
Found at i:8183665 original size:19 final size:19
Alignment explanation
Indices: 8183629--8183665 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8183619 GATAATAATT
* *
8183629 TGAAATTTTTTAATTTGGA
1 TGAAATTTTATAACTTGGA
8183648 TGAAATTTTATAACTTGG
1 TGAAATTTTATAACTTGG
8183666 TTTAATATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.16, T:0.49
Consensus pattern (19 bp):
TGAAATTTTATAACTTGGA
Found at i:8186731 original size:6 final size:6
Alignment explanation
Indices: 8186722--8186748 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
8186712 AACGCTAAAA
8186722 CACCGC CACCGC CACCGC CACCGC CAC
1 CACCGC CACCGC CACCGC CACCGC CAC
8186749 TCACTTCTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.67, G:0.15, T:0.00
Consensus pattern (6 bp):
CACCGC
Found at i:8192000 original size:477 final size:477
Alignment explanation
Indices: 8191100--8192142 Score: 1822
Period size: 477 Copynumber: 2.2 Consensus size: 477
8191090 GGCCAAGTTT
* * * *
8191100 TTCTTCTCAGCTTCTG-CAGTCCTCAGCTTTTCAGCAAGATCATTCTTCTCTTGAGCTACTGCCT
1 TTCTTATCAGCTTCAGTC-GTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCT
* *
8191164 GCATCATTTAAGTTTTCACCACAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTT
65 GCATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTAGGAAACATTT
* *
8191229 TACAGCCAATAGAGGCTTTTGTCCTTCTGCGAAGATACTCTAGCAAGGACAACCAGGTCAGATGC
130 TACAGCAAATAGAGGCTTTTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGC
* *
8191294 AAAACAAAATTGAACTGAATGTGAAGTTTTAGATTTATGGTAGAAAGAACCATTATCATAACTGA
195 AAAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTGA
*
8191359 GACCCAGAGAAAGTAAGAAGAGACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTA
260 GACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTA
8191424 TAGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
325 TAGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
* *
8191489 TTGCTTCAACGTCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTTCAACTTCTG
390 TTGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCGTTTTGAGCTTCAACTTCTG
*
8191554 TTCTCAATTCTTCAACGAATCTG
455 TTCTCAATTCTTCAACGAAGCTG
*
8191577 TTCTTATCAGCTTCAGTCTTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCTG
1 TTCTTATCAGCTTCAGTCGTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCTG
8191642 CATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTAGGAAACATTTT
66 CATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTAGGAAACATTTT
*
8191707 ACAGCAAATAGAGGCTTTTGTCCTTCTGCGAGGATAATCTAGCAAGGACAACCAGGTCAGATGCA
131 ACAGCAAATAGAGGCTTTTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGCA
* *
8191772 AAACAAAATTGAGCTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAAGT-AG
196 AAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTGA-
*
8191836 GACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTTAACTTCACTTCCAGCTCATCATTA
260 GACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTA
*
8191901 TAGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCTTAAGTTC
325 TAGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
8191966 TTGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCGTTTTGAGCTTCAACTTCTG
390 TTGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCGTTTTGAGCTTCAACTTCTG
*
8192031 TTCTCAATTCTTCAACGAGGCTG
455 TTCTCAATTCTTCAACGAAGCTG
* * **
8192054 TTCTTATCAGCTTCGGTGGTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAATTACTTCCTG
1 TTCTTATCAGCTTCAGTCGTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCTG
8192119 CATCATTTAAGTTTT-ACCTCAGTA
66 CATCATTTAAGTTTTCACCTCAGTA
8192143 CGCTAAACAA
Statistics
Matches: 538, Mismatches: 26, Indels: 5
0.95 0.05 0.01
Matches are distributed among these distances:
476 10 0.02
477 527 0.98
478 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (477 bp):
TTCTTATCAGCTTCAGTCGTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCTG
CATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTAGGAAACATTTT
ACAGCAAATAGAGGCTTTTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGCA
AAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTGAG
ACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTAT
AGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTCT
TGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCGTTTTGAGCTTCAACTTCTGT
TCTCAATTCTTCAACGAAGCTG
Found at i:8196524 original size:6 final size:6
Alignment explanation
Indices: 8196508--8196538 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
8196498 AGAAAGCGTC
8196508 AGGGCCA AGGGCA AGGGCA AGGGCA AGGGCA
1 AGGG-CA AGGGCA AGGGCA AGGGCA AGGGCA
8196539 TCACTTCCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.32, C:0.19, G:0.48, T:0.00
Consensus pattern (6 bp):
AGGGCA
Found at i:8210425 original size:17 final size:18
Alignment explanation
Indices: 8210386--8210426 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
8210376 TTTTATAAAT
8210386 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGATA
8210404 TGTGAATTA-ATATTGA-A
1 TGTGAATTATAT-TTGATA
8210421 TGTGAA
1 TGTGAA
8210427 AGGAAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.44
Consensus pattern (18 bp):
TGTGAATTATATTTGATA
Found at i:8220694 original size:44 final size:42
Alignment explanation
Indices: 8220631--8220779 Score: 124
Period size: 42 Copynumber: 3.5 Consensus size: 42
8220621 TGTGACATCA
* * *
8220631 TGTAAGACCACGTCTGGGACGTTGGCTTCG-ATTTTAGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCGTCGTA-TAT-GA-TTACG
8220675 TGTAAGACCATC-TCTGGGACATTGGCGTCGTATATGATTACG
1 TGTAAGACCA-CGTCTGGGACATTGGCGTCGTATATGATTACG
* * * * *
8220717 TGTAAGACC-CAGTCTGGGACAGTGGCATCGTTGTTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCGTCG-TATATGATTACG
* * *
8220760 TGAAAGATCACGTCTAGGAC
1 TGTAAGACCACGTCTGGGAC
8220780 GTTGCAATTG
Statistics
Matches: 88, Mismatches: 11, Indels: 13
0.79 0.10 0.12
Matches are distributed among these distances:
40 1 0.01
42 30 0.34
43 26 0.30
44 29 0.33
45 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCGTCGTATATGATTACG
Found at i:8220733 original size:42 final size:45
Alignment explanation
Indices: 8220631--8220747 Score: 129
Period size: 42 Copynumber: 2.7 Consensus size: 45
8220621 TGTGACATCA
* * *
8220631 TGTAAGACCACGTCTGGGACGTTGGCTTCG-ATTTTAGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGTATTATAGATTTACG
*
8220675 TGTAAGACCATC-TCTGGGACATTGGCGTCGTA-TAT-GA-TTACG
1 TGTAAGACCA-CGTCTGGGACATTGGCATCGTATTATAGATTTACG
*
8220717 TGTAAGACC-CAGTCTGGGACAGTGGCATCGT
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGT
8220748 TGTTTGATTA
Statistics
Matches: 64, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
40 1 0.02
42 31 0.48
43 2 0.03
44 28 0.44
45 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGTATTATAGATTTACG
Found at i:8221598 original size:22 final size:22
Alignment explanation
Indices: 8221564--8221840 Score: 302
Period size: 22 Copynumber: 12.6 Consensus size: 22
8221554 AAGTAAAAAT
8221564 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * *
8221586 TATTGATTGAATGTTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
8221608 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * * *
8221630 TATTGATTGAATGTTGTCTAAT
1 TGTTGATTAAATGCTGTCCAAA
8221652 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
*
8221674 TGTTGATTTAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
8221696 TATTGATTGAATGCTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
8221718 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * * * *
8221740 TATTGGTTGAATGTTGCCCAAT
1 TGTTGATTAAATGCTGTCCAAA
* * *
8221762 TGTTGATTAAATGTTATCTAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
8221784 TGTTGATTGAATGATGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
* *
8221806 TGTTGATTAAATGTTGTCTAAA
1 TGTTGATTAAATGCTGTCCAAA
*
8221828 TGTTAATTAAATG
1 TGTTGATTAAATG
8221841 ATATCTGAAT
Statistics
Matches: 207, Mismatches: 48, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 207 1.00
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (22 bp):
TGTTGATTAAATGCTGTCCAAA
Found at i:8221776 original size:11 final size:11
Alignment explanation
Indices: 8221762--8221840 Score: 65
Period size: 11 Copynumber: 7.2 Consensus size: 11
8221752 GTTGCCCAAT
8221762 TGTTGATTAAA
1 TGTTGATTAAA
8221773 TGTT-ATCTAAA
1 TGTTGAT-TAAA
*
8221784 TGTTGATTGAA
1 TGTTGATTAAA
* * *
8221795 TGATG-TCCAAT
1 TGTTGAT-TAAA
8221806 TGTTGATTAAA
1 TGTTGATTAAA
8221817 TGTTG-TCTAAA
1 TGTTGAT-TAAA
*
8221828 TGTTAATTAAA
1 TGTTGATTAAA
8221839 TG
1 TG
8221841 ATATCTGAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
10 4 0.08
11 45 0.85
12 4 0.08
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.44
Consensus pattern (11 bp):
TGTTGATTAAA
Found at i:8226565 original size:33 final size:33
Alignment explanation
Indices: 8226518--8226668 Score: 118
Period size: 33 Copynumber: 4.5 Consensus size: 33
8226508 TCCCCCAAGG
*
8226518 GGTTACTAAGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* *
8226551 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--TT-CAT-T---GGT
8226593 GGTTGCTAAGTGCTGATTCCCC-A---A-T-G-
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* * *
8226619 GGTTTCTAAGTGCTGATTCCCTGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
8226652 GGTTGCTAAGTGCTGAT
1 GGTTGCTAAGTGCTGAT
8226669 CCCACATTAT
Statistics
Matches: 96, Mismatches: 6, Indels: 32
0.72 0.04 0.24
Matches are distributed among these distances:
26 20 0.21
27 2 0.02
30 1 0.01
31 2 0.02
32 1 0.01
33 36 0.38
34 3 0.03
35 1 0.01
37 2 0.02
38 2 0.02
39 2 0.02
41 2 0.02
42 22 0.23
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
Found at i:8226662 original size:101 final size:101
Alignment explanation
Indices: 8226486--8226713 Score: 357
Period size: 101 Copynumber: 2.2 Consensus size: 101
8226476 ATTGAATATA
* *
8226486 AAGGGGGTTGCTAAGTGCTAATTCCCCCAAGGGGTTACTAAGTGCTGATTCCCCGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATT-CCCCAAGGGGTTACTAAGTGCTGATTCCCCGAATCATTGGT
* *
8226551 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTG
65 GGTTGCTAAGTGCTGATCCCACAGTATTTTAAATGTG
* * *
8226588 AAGGGGGTTGCTAAGTGCTGATTCCCCAATGGGTTTCTAAGTGCTGATTCCCTGAATCATTGGTG
1 AAGGGGGTTGCTAAGTGCTGATTCCCCAAGGGGTTACTAAGTGCTGATTCCCCGAATCATTGGTG
*
8226653 GTTGCTAAGTGCTGATCCCACATTATTTTAAATGTG
66 GTTGCTAAGTGCTGATCCCACAGTATTTTAAATGTG
* *
8226689 AAAGGGGTTTCTAAGTGCTGATTCC
1 AAGGGGGTTGCTAAGTGCTGATTCC
8226714 ACCGTGTTTT
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
101 94 0.81
102 22 0.19
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.33
Consensus pattern (101 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCAAGGGGTTACTAAGTGCTGATTCCCCGAATCATTGGTG
GTTGCTAAGTGCTGATCCCACAGTATTTTAAATGTG
Found at i:8226737 original size:43 final size:42
Alignment explanation
Indices: 8226652--8226756 Score: 131
Period size: 43 Copynumber: 2.5 Consensus size: 42
8226642 AATCATTGGT
* *
8226652 GGTTGCTAAGTGCTGATCCCACATTATTTTAAATGTGAAAGG
1 GGTTACTAAGTGCTGATTCCACATTATTTTAAATGTGAAAGG
* * *
8226694 GGTTTCTAAGTGCTGATTCCACCGTGT-TTTTGAATGTGAAAGG
1 GGTTACTAAGTGCTGATTCCA-CAT-TATTTTAAATGTGAAAGG
*
8226737 GGTTACTAAGTGTTGATTCC
1 GGTTACTAAGTGCTGATTCC
8226757 CCGAATCATT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
42 19 0.35
43 35 0.64
44 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (42 bp):
GGTTACTAAGTGCTGATTCCACATTATTTTAAATGTGAAAGG
Found at i:8234102 original size:103 final size:102
Alignment explanation
Indices: 8233893--8234118 Score: 319
Period size: 103 Copynumber: 2.2 Consensus size: 102
8233883 AATATAAAGG
* * ** *
8233893 GGGTTGCTAAGTGCTAATTCCCCCAATGAGTTGCTAAGTGCTGATTACCTGATTCATTGGTGGTT
1 GGGTTGCTAAGTGCTGATTCCCCCAAGGAGTTGCTAAGTGCTGATTACCAAAATCATTGGTGGTT
* **
8233958 GCTAAGTGCTGATTCCATCGTATTTTAAATGTGAAGG
66 GCTAAGTGCTGATACCATCGTATTTTAAATGTGAAAA
* * *
8233995 GGGTTGATAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCAAAATCATTGGTGGT
1 GGGTTGCTAAGTGCTGATTCCCCCAAGGAGTTGCTAAGTGCTGATT-ACCAAAATCATTGGTGGT
*
8234060 TGCTAAGTGCTGATACCA-CATTATTTTAAATGTGAAAA
65 TGCTAAGTGCTGATACCATC-GTATTTTAAATGTGAAAA
8234098 GGGTTGCTAAGTGCTGATTCC
1 GGGTTGCTAAGTGCTGATTCC
8234119 ACCATATTTT
Statistics
Matches: 109, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
102 43 0.39
103 66 0.61
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (102 bp):
GGGTTGCTAAGTGCTGATTCCCCCAAGGAGTTGCTAAGTGCTGATTACCAAAATCATTGGTGGTT
GCTAAGTGCTGATACCATCGTATTTTAAATGTGAAAA
Found at i:8234127 original size:42 final size:42
Alignment explanation
Indices: 8234057--8234160 Score: 149
Period size: 42 Copynumber: 2.5 Consensus size: 42
8234047 AATCATTGGT
*
8234057 GGTTGCTAAGTGCTGATACCACATTA-TTTTAAATGTGAAAAG
1 GGTTGCTAAGTGCTGATTCCACATTATTTTTAAATGTG-AAAG
* *
8234099 GGTTGCTAAGTGCTGATTCCACCA-TATTTTTGAATTTGAAAG
1 GGTTGCTAAGTGCTGATTCCA-CATTATTTTTAAATGTGAAAG
8234141 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
8234161 CCGAATCACT
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
42 46 0.81
43 11 0.19
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCACATTATTTTTAAATGTGAAAG
Found at i:8244555 original size:20 final size:20
Alignment explanation
Indices: 8244532--8244624 Score: 105
Period size: 20 Copynumber: 4.7 Consensus size: 20
8244522 TAAAAGGGGA
*
8244532 ACCGAAGTGCAAACATGGAC
1 ACCGAAGTGCAAACAAGGAC
* *
8244552 ACCGAAGTGTAAACAAGGGC
1 ACCGAAGTGCAAACAAGGAC
* *
8244572 ACCGGAGTGCAATCAAGGAC
1 ACCGAAGTGCAAACAAGGAC
* * * *
8244592 ACCAAAATGTAAACAAGGGC
1 ACCGAAGTGCAAACAAGGAC
8244612 ACCGAAGTGCAAA
1 ACCGAAGTGCAAA
8244625 AATATAGACA
Statistics
Matches: 57, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 57 1.00
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.10
Consensus pattern (20 bp):
ACCGAAGTGCAAACAAGGAC
Found at i:8244581 original size:40 final size:40
Alignment explanation
Indices: 8244532--8244624 Score: 141
Period size: 40 Copynumber: 2.3 Consensus size: 40
8244522 TAAAAGGGGA
* * *
8244532 ACCGAAGTGCAAACATGGACACCGAAGTGTAAACAAGGGC
1 ACCGAAGTGCAAACAAGGACACCAAAATGTAAACAAGGGC
* *
8244572 ACCGGAGTGCAATCAAGGACACCAAAATGTAAACAAGGGC
1 ACCGAAGTGCAAACAAGGACACCAAAATGTAAACAAGGGC
8244612 ACCGAAGTGCAAA
1 ACCGAAGTGCAAA
8244625 AATATAGACA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.10
Consensus pattern (40 bp):
ACCGAAGTGCAAACAAGGACACCAAAATGTAAACAAGGGC
Found at i:8247608 original size:31 final size:31
Alignment explanation
Indices: 8247575--8247635 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
8247565 TTATAAATAT
8247575 TTTTTTTATAATTTGT-ATGT-ATTTGTATAA
1 TTTTTTTATAATTTGTCATGTAATTT-TATAA
*
8247605 TTTTTTTATAATTTTTCATGTAATTTTATAA
1 TTTTTTTATAATTTGTCATGTAATTTTATAA
8247636 AATATTGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 15 0.54
31 9 0.32
32 4 0.14
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.64
Consensus pattern (31 bp):
TTTTTTTATAATTTGTCATGTAATTTTATAA
Found at i:8253642 original size:162 final size:162
Alignment explanation
Indices: 8253375--8253695 Score: 606
Period size: 162 Copynumber: 2.0 Consensus size: 162
8253365 TATAGAACAA
8253375 ATCTCTTTGGGTAAACTACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCACT
1 ATCTCTTTGGGTAAACTACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCACT
* *
8253440 CGTCATTAATTTGTCATTACATATACTCATTATGATCACCCAACTTTAATAAATTTTCATTTTGG
66 CATCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAATAAATTTTCATTTTGG
8253505 TCACTATTTTATATTTTTAATTTCCTTTAAAT
131 TCACTATTTTATATTTTTAATTTCCTTTAAAT
8253537 ATCTCTTTGGGTAAACTACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCACT
1 ATCTCTTTGGGTAAACTACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCACT
* *
8253602 CATCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAGTAAGTTTTCATTTTGG
66 CATCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAATAAATTTTCATTTTGG
8253667 TCACTATTTTATATTTTTAATTTCCTTTA
131 TCACTATTTTATATTTTTAATTTCCTTTA
8253696 GGTTTATTTT
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
162 155 1.00
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.45
Consensus pattern (162 bp):
ATCTCTTTGGGTAAACTACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCACT
CATCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAATAAATTTTCATTTTGG
TCACTATTTTATATTTTTAATTTCCTTTAAAT
Found at i:8254127 original size:20 final size:20
Alignment explanation
Indices: 8254104--8254185 Score: 78
Period size: 20 Copynumber: 4.1 Consensus size: 20
8254094 AATTAATAAC
8254104 TTTATAAGAAATTCAGTAAT
1 TTTATAAGAAATTCAGTAAT
* *
8254124 TTTATAAGAAATTTAGTAAA
1 TTTATAAGAAATTCAGTAAT
*
8254144 ATT-TAAGAGAA-TCAGTAAT
1 TTTATAAGA-AATTCAGTAAT
* * *
8254163 TTTTTAAAAAAATTTAGTAAT
1 TTTAT-AAGAAATTCAGTAAT
8254184 TT
1 TT
8254186 ACAATGTTGT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
19 13 0.26
20 25 0.50
21 12 0.24
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.41
Consensus pattern (20 bp):
TTTATAAGAAATTCAGTAAT
Found at i:8255499 original size:19 final size:20
Alignment explanation
Indices: 8255462--8255499 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8255452 ACTAAGAGAT
8255462 TCAATAATTTTATAAGAAAA
1 TCAATAATTTTATAAGAAAA
*
8255482 TCAATCATTTTA-AAGAAA
1 TCAATAATTTTATAAGAAA
8255500 TTTAATAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (20 bp):
TCAATAATTTTATAAGAAAA
Found at i:8255550 original size:20 final size:20
Alignment explanation
Indices: 8255527--8255569 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
8255517 TATTCATTAC
* *
8255527 TTTTATAATAACTTCAGTAA
1 TTTTATAAAAAATTCAGTAA
* *
8255547 TTTTGTAAAAAATTCGGTAA
1 TTTTATAAAAAATTCAGTAA
8255567 TTT
1 TTT
8255570 AAAATATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.47
Consensus pattern (20 bp):
TTTTATAAAAAATTCAGTAA
Found at i:8255695 original size:19 final size:18
Alignment explanation
Indices: 8255668--8255728 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 18
8255658 ATAGTTATTA
*
8255668 AAGAGATTTAGTAATTTTT
1 AAGAAATTTA-TAATTTTT
* *
8255687 AAGAAATTTATCATTTAT
1 AAGAAATTTATAATTTTT
8255705 AA-AAGATTTAATAATTTTGT
1 AAGAA-ATTT-ATAATTTT-T
8255725 AAGA
1 AAGA
8255729 GACTCGGTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
17 2 0.06
18 12 0.36
19 15 0.45
20 3 0.09
21 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (18 bp):
AAGAAATTTATAATTTTT
Found at i:8256166 original size:19 final size:19
Alignment explanation
Indices: 8256142--8256200 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
8256132 TAAACATTAC
8256142 AAGAGATTCAATAATTTAT
1 AAGAGATTCAATAATTTAT
* *
8256161 AAGAGATTCAAATATTTTTGT
1 AAGAGATTC-AATA-ATTTAT
* *
8256182 AAAAAATTCAATAATTTAT
1 AAGAGATTCAATAATTTAT
8256201 GTTATAAGGA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
19 13 0.41
20 8 0.25
21 11 0.34
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.39
Consensus pattern (19 bp):
AAGAGATTCAATAATTTAT
Found at i:8257588 original size:23 final size:22
Alignment explanation
Indices: 8257545--8257602 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
8257535 AAAGGGTATC
* *
8257545 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
8257566 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
8257589 TGCATATCATATCT
1 TACAAATCATATCT
8257603 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:8276847 original size:341 final size:340
Alignment explanation
Indices: 8276194--8276872 Score: 1038
Period size: 341 Copynumber: 2.0 Consensus size: 340
8276184 CTAGAAATGC
8276194 ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTTTTATTATAGTCTACTCAGAA
1 ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTTTTATTATAGTCTACTCAGAA
* * *
8276259 TATTAAGAAATATGAGATTGGACTATACAAGGGTGACTATGCTATGACTTGTGTCCAATTTAGAT
66 TATCAAGAAATATGAGATTGGACTATACAAGGGTGACTATACCATGACTTGTGTCCAATTTAGAT
* **
8276324 ATAAAGGATAAAATGATATAATACATGAAAAGTTTATCACAGAAAGGTTATGCCAAATCATGACT
131 ATAAAGGATAAAATGATATAATAAATGAAAAGTTTATCACAGAAAGGTTATGCCAAATCACAACT
* *
8276389 TCTTGTAACTTGAGTAGCAATGATGCATTGCTAGACGCCACTCATTGCTTGTAACATTAGAAATG
196 TCTTGTAACTTGAGTAGCAATGATGCATTGCTAGACGCCACGCATTGCTTGAAACATTAGAAATG
* * *
8276454 TTCTAGTTTTACTACCAACATTATAAGAACCTACAAGGCCACACCCTATGGTTAAAGCGAACAGA
261 TTCTAGTATTACTACCAACATTATAAGAACCTACAAGACCACACCCTATGGTTAAAGAGAACAGA
* *
8276519 TTTTACACCAATATA
326 CTTCACACCAATATA
* *
8276534 ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTGTTTATTGTAGTCTATTCAGA
1 ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTT-TTTATTATAGTCTACTCAGA
*
8276599 ATATCAAGAAATATGAGATTGGACTATACAAGTGTGACTATACCATGACTTGTGTCCAATTTAGA
65 ATATCAAGAAATATGAGATTGGACTATACAAGGGTGACTATACCATGACTTGTGTCCAATTTAGA
* * * * *
8276664 TATAAATGATAAAATGATATAATAAAATGAAATA-TTTATTAGAGAAAGGTTATGTCGAATCACA
130 TATAAAGGATAAAATGATATAAT-AAATGAAA-AGTTTATCACAGAAAGGTTATGCCAAATCACA
* *
8276728 ACTTCTTGTAACTTGGGTAGCAATGATGTATTGCTAGACGCCACGCATTGCTTGAAACATTAGAA
193 ACTTCTTGTAACTTGAGTAGCAATGATGCATTGCTAGACGCCACGCATTGCTTGAAACATTAGAA
** * * * * * *
8276793 ATGTTCTAGTATTACTACCAATGTTA-CAGGACCTATAAGATCACACCTTATGGTTAAAGAGAAT
258 ATGTTCTAGTATTACTACCAACATTATAAGAACCTACAAGACCACACCCTATGGTTAAAGAGAAC
8276857 AGACTTCACACCAATA
323 AGACTTCACACCAATA
8276873 GAATAGGAGT
Statistics
Matches: 305, Mismatches: 31, Indels: 5
0.89 0.09 0.01
Matches are distributed among these distances:
340 44 0.14
341 145 0.48
342 115 0.38
343 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (340 bp):
ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTTTTATTATAGTCTACTCAGAA
TATCAAGAAATATGAGATTGGACTATACAAGGGTGACTATACCATGACTTGTGTCCAATTTAGAT
ATAAAGGATAAAATGATATAATAAATGAAAAGTTTATCACAGAAAGGTTATGCCAAATCACAACT
TCTTGTAACTTGAGTAGCAATGATGCATTGCTAGACGCCACGCATTGCTTGAAACATTAGAAATG
TTCTAGTATTACTACCAACATTATAAGAACCTACAAGACCACACCCTATGGTTAAAGAGAACAGA
CTTCACACCAATATA
Found at i:8280722 original size:57 final size:57
Alignment explanation
Indices: 8280597--8280704 Score: 198
Period size: 57 Copynumber: 1.9 Consensus size: 57
8280587 AGAGTTTTAT
*
8280597 GTTAATTAATCATACCTCCACTTGCTAATCCCCCACAGGAGGATTAGTTGCAAAATA
1 GTTAATTAATCATACCTCCACTCGCTAATCCCCCACAGGAGGATTAGTTGCAAAATA
*
8280654 GTTAATTAATCATACCTCTACTCGCTAATCCCCCACAGGAGGATTAGTTGC
1 GTTAATTAATCATACCTCCACTCGCTAATCCCCCACAGGAGGATTAGTTGC
8280705 TCATGGATCT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.29
Consensus pattern (57 bp):
GTTAATTAATCATACCTCCACTCGCTAATCCCCCACAGGAGGATTAGTTGCAAAATA
Found at i:8280985 original size:61 final size:61
Alignment explanation
Indices: 8280910--8281031 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
8280900 GAAAAGAGAA
8280910 AAACTAAATACTAGATCTAAAGAGAAAATTATAGAATATGAAAAATTTCCATAACATGTGC
1 AAACTAAATACTAGATCTAAAGAGAAAATTATAGAATATGAAAAATTTCCATAACATGTGC
8280971 AAACTAAATACTAGATCTAAAGAGAAAATTATAGAATATGAAAAATTTCCATAACATGTGC
1 AAACTAAATACTAGATCTAAAGAGAAAATTATAGAATATGAAAAATTTCCATAACATGTGC
8281032 TAAGTGAGCC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.26
Consensus pattern (61 bp):
AAACTAAATACTAGATCTAAAGAGAAAATTATAGAATATGAAAAATTTCCATAACATGTGC
Found at i:8281904 original size:17 final size:17
Alignment explanation
Indices: 8281874--8281916 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
8281864 ACTATCAGCA
*
8281874 GTTA-AATAATTTGACT
1 GTTAGAATAAGTTGACT
8281890 GTTAGAATAAGTTGACT
1 GTTAGAATAAGTTGACT
8281907 GTTAGAATAA
1 GTTAGAATAA
8281917 ATATCCTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 4 0.16
17 21 0.84
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.37
Consensus pattern (17 bp):
GTTAGAATAAGTTGACT
Found at i:8288275 original size:60 final size:60
Alignment explanation
Indices: 8288194--8288317 Score: 160
Period size: 60 Copynumber: 2.1 Consensus size: 60
8288184 TGAGTATTCC
* * * * *
8288194 AAGG-ATCGAACCCCAATGAGTCGGCGATTTAATTATTCATTCTCGACAAACATGCAATG
1 AAGGAATCAAACCCAAAGGAGTCAGCGATTTAATGATTCATTCTCGACAAACATGCAATG
* * * *
8288253 AAGGAATCAAACCCAAAGGAGTCAGTGATTTAATGATTCCTTCTCGACAAGCATGGAATG
1 AAGGAATCAAACCCAAAGGAGTCAGCGATTTAATGATTCATTCTCGACAAACATGCAATG
8288313 AAGGA
1 AAGGA
8288318 GTCTAACTAG
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
59 4 0.07
60 51 0.93
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23
Consensus pattern (60 bp):
AAGGAATCAAACCCAAAGGAGTCAGCGATTTAATGATTCATTCTCGACAAACATGCAATG
Found at i:8296182 original size:25 final size:28
Alignment explanation
Indices: 8296154--8296204 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
8296144 GCGATTAACT
8296154 CGCTTT-GG-TAATCTTC-ATCAACTGC
1 CGCTTTGGGTTAATCTTCAATCAACTGC
*
8296179 CGCTTTGGGTTCATCTTCAATCAACT
1 CGCTTTGGGTTAATCTTCAATCAACT
8296205 AGTCGATATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 6 0.27
26 2 0.09
27 7 0.32
28 7 0.32
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.37
Consensus pattern (28 bp):
CGCTTTGGGTTAATCTTCAATCAACTGC
Found at i:8298676 original size:3 final size:3
Alignment explanation
Indices: 8298668--8298712 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
8298658 TAATGTAAAC
8298668 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8298713 CTAAATAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8300308 original size:13 final size:13
Alignment explanation
Indices: 8300283--8300316 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
8300273 AACGTTGGAC
8300283 TATTATTTTTATT
1 TATTATTTTTATT
8300296 TATT-TTTTGTATT
1 TATTATTTT-TATT
8300309 TATTATTT
1 TATTATTT
8300317 AGTTTGGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.21
13 12 0.63
14 3 0.16
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (13 bp):
TATTATTTTTATT
Found at i:8300804 original size:44 final size:44
Alignment explanation
Indices: 8300732--8301108 Score: 187
Period size: 44 Copynumber: 8.1 Consensus size: 44
8300722 CCTTTATCTT
* * * *
8300732 AATCCGCTCTGCTATAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCAGCTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
8300776 AATCTGCTCAGCTGTAAGCTCAGAGAGATAAGATTTCTGGCTTC
1 AATCTGCTCAGCTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
8300820 AATCTGATACGATCTA-CTTTATTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTT
1 AATCTG---C--TC-AGC-----TGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* *
8300874 AATCCGCTCTA-CTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTC-AGCTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* *
8300918 CATCTGCTCAGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTC
1 AATCTGCTCAGCTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * *
8300962 AATCTGATGCGATCTA-CTCTACTATAACTTCAGAGAGATAAGATCATTTA-TTTT
1 AATC---TGC--TC-AGCTGTA--AT--C-TCAGGGAGATAAGATTA-CTAGCTTC
* *
8301016 AATCCGCTCCA-CT-TAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCT-CAGCTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
8301059 TATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCAGCTGTAATCTCAGGGAGATAAGATTACTAGCTTC
8301103 AATCTG
1 AATCTG
8301109 ATATGATCTA
Statistics
Matches: 255, Mismatches: 44, Indels: 68
0.69 0.12 0.19
Matches are distributed among these distances:
42 4 0.02
43 27 0.11
44 136 0.53
45 1 0.00
46 2 0.01
47 4 0.02
48 2 0.01
49 18 0.07
50 3 0.01
51 5 0.02
53 2 0.01
54 47 0.18
55 3 0.01
56 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (44 bp):
AATCTGCTCAGCTGTAATCTCAGGGAGATAAGATTACTAGCTTC
Found at i:8300940 original size:142 final size:142
Alignment explanation
Indices: 8300681--8301248 Score: 913
Period size: 142 Copynumber: 4.0 Consensus size: 142
8300671 GAGATAAAAC
* * * * *
8300681 CTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTTTATCTTAATCCGCTCTGCTA
1 CTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTG
* * *
8300746 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCAGCTGTAAGCTCAGAGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGCTCAGCTGTAATCTCAGGGAGATAAGATT
8300811 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* *
8300823 CTGATACGATCTACTTTATTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTG
1 CTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTG
*
8300888 TAATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCAGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGCTCAGCTGTAATCTCAGGGAGATAAGATT
*
8300953 TCTAGCTTCAAT
131 TCTGGCTTCAAT
* * * *
8300965 CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACT-
1 CTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTG
*
8301029 TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGCTCAGCTGTAATCTCAGGGAGATAAGATT
8301094 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* * *
8301106 CTGATATGATCTACTTTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCTACTG
1 CTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTG
* * * *
8301171 TAATCTCAGAGAGATAGGATTACTAGCTTTTATCTGCTCCGCTGTAATCTCAGGGAGATAATATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGCTCAGCTGTAATCTCAGGGAGATAAGATT
8301236 TCTGGCTTCAAT
131 TCTGGCTTCAAT
8301248 C
1 C
8301249 CGCTTCCTTA
Statistics
Matches: 395, Mismatches: 30, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
141 131 0.33
142 264 0.67
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.34
Consensus pattern (142 bp):
CTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTG
TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGCTCAGCTGTAATCTCAGGGAGATAAGATT
TCTGGCTTCAAT
Found at i:8301189 original size:283 final size:284
Alignment explanation
Indices: 8300681--8301248 Score: 958
Period size: 283 Copynumber: 2.0 Consensus size: 284
8300671 GAGATAAAAC
* * **
8300681 CTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTTTATCTTAATCCGCTCTGCTA
1 CTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCATTTATCTTAATCCGCTCCACTA
8300746 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCAGCTGTAAGCTCAGAGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCAGCTGTAAGCTCAGAGAGATAAGATT
*
8300811 TCTGGCTTCAATCTGATACGATCTACTTTATTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
131 TCTGGCTTCAATCTGATACGATCTACTTTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
* *
8300876 TCCGCTCTACTGTAATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCAGCTGTAATCTCAG
196 TCCACTCTACTGTAATCTCAGAGAGATAGGATTACTAGCTTCCATCTGCTCAGCTGTAATCTCAG
8300941 GGAGATAAGATTTCTAGCTTCAAT
261 GGAGATAAGATTTCTAGCTTCAAT
* *
8300965 CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACT-
1 CTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCATTTATCTTAATCCGCTCCACTA
* * * *
8301029 TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCAGCTGTAAGCTCAGAGAGATAAGATT
*
8301094 TCTGGCTTCAATCTGATATGATCTACTTTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
131 TCTGGCTTCAATCTGATACGATCTACTTTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
** *
8301159 TCCACTCTACTGTAATCTCAGAGAGATAGGATTACTAGCTTTTATCTGCTCCGCTGTAATCTCAG
196 TCCACTCTACTGTAATCTCAGAGAGATAGGATTACTAGCTTCCATCTGCTCAGCTGTAATCTCAG
* *
8301224 GGAGATAATATTTCTGGCTTCAAT
261 GGAGATAAGATTTCTAGCTTCAAT
8301248 C
1 C
8301249 CGCTTCCTTA
Statistics
Matches: 265, Mismatches: 19, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
283 207 0.78
284 58 0.22
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.34
Consensus pattern (284 bp):
CTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCATTTATCTTAATCCGCTCCACTA
TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCAGCTGTAAGCTCAGAGAGATAAGATT
TCTGGCTTCAATCTGATACGATCTACTTTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
TCCACTCTACTGTAATCTCAGAGAGATAGGATTACTAGCTTCCATCTGCTCAGCTGTAATCTCAG
GGAGATAAGATTTCTAGCTTCAAT
Found at i:8304439 original size:51 final size:51
Alignment explanation
Indices: 8304379--8304573 Score: 234
Period size: 51 Copynumber: 3.8 Consensus size: 51
8304369 CATGAGAACT
* ***
8304379 CATGTGTAGTACTATGTGTAGGCTACTATGAGTATAAGATAGTTATGGTCA
1 CATGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGATAGTTATGGTCA
* *
8304430 CATGTGTAGTACTAAGTGTTGGCTACTATGTGTACCGGATAGCTT-TGGTCA
1 CATGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGATAG-TTATGGTCA
* * * * *
8304481 CGTGTGTAGTATTATGTGCAGGCTACTACGTGTACCGGAT-GGTATTGGTCA
1 CATGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGATAGTTA-TGGTCA
*
8304532 CATGTGTAGTACTCA-GTGTAGGCTATTATGTGTACCGGATAG
1 CATGTGTAGTACT-ATGTGTAGGCTACTATGTGTACCGGATAG
8304574 CATTGATCAT
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
49 1 0.01
50 1 0.01
51 115 0.95
52 4 0.03
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (51 bp):
CATGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGATAGTTATGGTCA
Found at i:8304965 original size:12 final size:12
Alignment explanation
Indices: 8304948--8304977 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
8304938 GTTGAATAAG
8304948 ATATTAAATTAA
1 ATATTAAATTAA
8304960 ATATTAAATTAA
1 ATATTAAATTAA
8304972 ATATTA
1 ATATTA
8304978 TTGAGTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATTAAATTAA
Found at i:8310624 original size:22 final size:22
Alignment explanation
Indices: 8310596--8310637 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
8310586 TTTCCCATAA
8310596 TGTGATTTTTGGACTAGAATAG
1 TGTGATTTTTGGACTAGAATAG
*
8310618 TGTGATTTTTGGGCTAGAAT
1 TGTGATTTTTGGACTAGAAT
8310638 GAATAATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.05, G:0.29, T:0.43
Consensus pattern (22 bp):
TGTGATTTTTGGACTAGAATAG
Found at i:8311069 original size:51 final size:51
Alignment explanation
Indices: 8310977--8311171 Score: 182
Period size: 51 Copynumber: 3.8 Consensus size: 51
8310967 CATGAGAACT
* * ***
8310977 CATGTGTAGTACTATGTG-TAGGCTACTATGAGTATAAGATAGTTATGGTCA
1 CATGTGTAGTACTAAGTGCT-GGCTACTATGTGTACCGGATAGTTATGGTCA
* * *
8311028 CATGTGTAATACTAAATGCTGGCTATTATGTGTACCGGATAGCTT-TGGTCA
1 CATGTGTAGTACTAAGTGCTGGCTACTATGTGTACCGGATAG-TTATGGTCA
* * * * * * *
8311079 CGTGTGTAGTACTATGTGCAGCCTACTACGTGTACCGGAT-GGTATTAGTCA
1 CATGTGTAGTACTAAGTGCTGGCTACTATGTGTACCGGATAGTTA-TGGTCA
*
8311130 CATGTGTAGTACTCAGTG-TAGGCTACTATGTGTACCGGATAG
1 CATGTGTAGTACTAAGTGCT-GGCTACTATGTGTACCGGATAG
8311172 AATTGATCAC
Statistics
Matches: 114, Mismatches: 24, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
49 1 0.01
50 1 0.01
51 108 0.95
52 4 0.04
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.33
Consensus pattern (51 bp):
CATGTGTAGTACTAAGTGCTGGCTACTATGTGTACCGGATAGTTATGGTCA
Found at i:8317204 original size:27 final size:27
Alignment explanation
Indices: 8317182--8317411 Score: 243
Period size: 27 Copynumber: 8.5 Consensus size: 27
8317172 AAGGGTATAA
*
8317182 TAGTTATTTTACCCTATGGGGGTATTT
1 TAGTCATTTTACCCTATGGGGGTATTT
8317209 CTA-TCATTTTACCCTATGGGGGTATTT
1 -TAGTCATTTTACCCTATGGGGGTATTT
* * * *
8317236 TGGTCATTTTACCTTATAGGGATATTT
1 TAGTCATTTTACCCTATGGGGGTATTT
*
8317263 T-GATCATTTTACCCTATAGGGGTATTT
1 TAG-TCATTTTACCCTATGGGGGTATTT
* *
8317290 TGGTCATTTTACCTTATGGGGGTATTT
1 TAGTCATTTTACCCTATGGGGGTATTT
*
8317317 TAGTCATTTTATCCTATGGGGGTA-TT
1 TAGTCATTTTACCCTATGGGGGTATTT
* *
8317343 TCGATCATTTTACCTTATTGGGGGTA-TT
1 TAG-TCATTTTACCCTA-TGGGGGTATTT
* * *
8317371 TAGGTCATTTTACCATATAGGGATATTT
1 TA-GTCATTTTACCCTATGGGGGTATTT
* *
8317399 TGGTTATTTTACC
1 TAGTCATTTTACC
8317412 TATTTTGGGG
Statistics
Matches: 174, Mismatches: 21, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.03
27 138 0.79
28 29 0.17
29 1 0.01
ACGTcount: A:0.20, C:0.13, G:0.20, T:0.47
Consensus pattern (27 bp):
TAGTCATTTTACCCTATGGGGGTATTT
Found at i:8317245 original size:54 final size:53
Alignment explanation
Indices: 8317187--8317412 Score: 292
Period size: 54 Copynumber: 4.2 Consensus size: 53
8317177 TATAATAGTT
* *
8317187 ATTTTACCCTATGGGGGTATTTCTATCATTTTACCCTATGGGGGTATTTTGGTC
1 ATTTTACCTTATGGGGGTATTT-TATCATTTTACCCTATAGGGGTATTTTGGTC
* *
8317241 ATTTTACCTTATAGGGATATTTTGATCATTTTACCCTATAGGGGTATTTTGGTC
1 ATTTTACCTTATGGGGGTATTTT-ATCATTTTACCCTATAGGGGTATTTTGGTC
* * * *
8317295 ATTTTACCTTATGGGGGTATTTTAGTCATTTTATCCTATGGGGGTATTTCGATC
1 ATTTTACCTTATGGGGGTATTTTA-TCATTTTACCCTATAGGGGTATTTTGGTC
* * *
8317349 ATTTTACCTTATTGGGGGTA-TTTAGGTCATTTTACCATATAGGGATATTTTGGTT
1 ATTTTACCTTA-TGGGGGTATTTTA--TCATTTTACCCTATAGGGGTATTTTGGTC
8317404 ATTTTACCT
1 ATTTTACCT
8317413 ATTTTGGGGT
Statistics
Matches: 151, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
53 2 0.01
54 109 0.72
55 40 0.26
ACGTcount: A:0.20, C:0.13, G:0.20, T:0.46
Consensus pattern (53 bp):
ATTTTACCTTATGGGGGTATTTTATCATTTTACCCTATAGGGGTATTTTGGTC
Found at i:8317297 original size:81 final size:81
Alignment explanation
Indices: 8317187--8317412 Score: 294
Period size: 81 Copynumber: 2.8 Consensus size: 81
8317177 TATAATAGTT
* *
8317187 ATTTTACCCTATGGGGGTATTTCT-ATCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCTT
1 ATTTTACCCTATGGGGGTATTT-TGGTCATTTTACCATATGGGGGTATTTTGGTCATTTTACCTT
*
8317251 ATAGGGATATTTTGATC
65 ATAGGGATATTTCGATC
* * *
8317268 ATTTTACCCTATAGGGGTATTTTGGTCATTTTACCTTATGGGGGTATTTTAGTCATTTTATCC-T
1 ATTTTACCCTATGGGGGTATTTTGGTCATTTTACCATATGGGGGTATTTTGGTCATTTTA-CCTT
* *
8317332 ATGGGGGTATTTCGATC
65 ATAGGGATATTTCGATC
* * * * *
8317349 ATTTTACCTTATTGGGGGTATTTAGGTCATTTTACCATATAGGGATATTTTGGTTATTTTACCT
1 ATTTTACCCTA-TGGGGGTATTTTGGTCATTTTACCATATGGGGGTATTTTGGTCATTTTACCT
8317413 ATTTTGGGGT
Statistics
Matches: 126, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
80 1 0.01
81 81 0.64
82 44 0.35
ACGTcount: A:0.20, C:0.13, G:0.20, T:0.46
Consensus pattern (81 bp):
ATTTTACCCTATGGGGGTATTTTGGTCATTTTACCATATGGGGGTATTTTGGTCATTTTACCTTA
TAGGGATATTTCGATC
Found at i:8329553 original size:100 final size:104
Alignment explanation
Indices: 8329374--8329623 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
8329364 TGATAATAAC
**
8329374 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
8329439 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
8329476 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
8329539 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* * *
8329581 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
8329624 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 39 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:8329617 original size:56 final size:51
Alignment explanation
Indices: 8329375--8329623 Score: 299
Period size: 50 Copynumber: 4.8 Consensus size: 51
8329365 GATAATAACA
* * ** *
8329375 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCG-TGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCGAT-CTCGG
* *
8329426 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTC-ATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCGATCTCGG
* *
8329476 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCG-TCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCGATCTCGG
* *
8329526 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC--GATC-T-CGG
*
8329581 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
8329624 TTACCCAAAT
Statistics
Matches: 172, Mismatches: 17, Indels: 13
0.85 0.08 0.06
Matches are distributed among these distances:
49 1 0.01
50 92 0.53
51 33 0.19
52 1 0.01
53 2 0.01
54 1 0.01
55 2 0.01
56 40 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCGATCTCGG
Found at i:8329891 original size:17 final size:18
Alignment explanation
Indices: 8329869--8329905 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
8329859 CTTCCTTCCT
8329869 TCTCTGTTTCGTT-TTTC
1 TCTCTGTTTCGTTCTTTC
*
8329886 TCTCTGTTTCTTTCTTTC
1 TCTCTGTTTCGTTCTTTC
8329904 TC
1 TC
8329906 CCTTCTCTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.00, C:0.27, G:0.08, T:0.65
Consensus pattern (18 bp):
TCTCTGTTTCGTTCTTTC
Found at i:8329916 original size:40 final size:40
Alignment explanation
Indices: 8329851--8329945 Score: 136
Period size: 40 Copynumber: 2.3 Consensus size: 40
8329841 CTTTTCTTTC
* * *
8329851 TTTCTTTCCTTCCTTCCTTCTCTGTTTCGTTTTTCTCTCTG
1 TTTCTTT-CTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
*
8329892 TTTCTTTCTTTCTCCCTTCTCTGTTTTGTTTTGCTCTCTG
1 TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
8329932 TTTCTTTTCTTTCT
1 TTTC-TTTCTTTCT
8329946 TTCTTTGTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 33 0.67
41 16 0.33
ACGTcount: A:0.00, C:0.28, G:0.07, T:0.64
Consensus pattern (40 bp):
TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
Found at i:8329969 original size:3 final size:3
Alignment explanation
Indices: 8329961--8330014 Score: 57
Period size: 3 Copynumber: 20.0 Consensus size: 3
8329951 TGTCATATAT
*
8329961 ATA ATA AT- ATA ATA AT- ATA ATA AT- ATA AT- ATA AT- ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8330004 ATA AT- ATA ATA
1 ATA ATA ATA ATA
8330015 TAAAAACATA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
2 12 0.28
3 31 0.72
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
ATA
Found at i:8329970 original size:8 final size:8
Alignment explanation
Indices: 8329959--8330014 Score: 71
Period size: 8 Copynumber: 7.0 Consensus size: 8
8329949 TTTGTCATAT
8329959 ATATAATA
1 ATATAATA
8329967 ATATAATA
1 ATATAATA
8329975 ATATAATA
1 ATATAATA
8329983 ATATAAT-
1 ATATAATA
8329990 ATA-ATATA
1 ATATA-ATA
*
8329998 TTAATAATA
1 AT-ATAATA
8330007 ATATAATA
1 ATATAATA
8330015 TAAAAACATA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
6 1 0.02
7 5 0.12
8 30 0.71
9 5 0.12
10 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
ATATAATA
Found at i:8329974 original size:5 final size:5
Alignment explanation
Indices: 8329964--8330017 Score: 60
Period size: 5 Copynumber: 10.8 Consensus size: 5
8329954 CATATATATA
8329964 ATAAT ATAAT A-ATAT AATAAT ATAAT ATAAT AT-AT -TAAT AATAAT
1 ATAAT ATAAT ATA-AT -ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT
8330009 ATAAT ATAA
1 ATAAT ATAA
8330018 AAACATAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
3 1 0.02
4 5 0.12
5 29 0.67
6 7 0.16
7 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:8329990 original size:21 final size:21
Alignment explanation
Indices: 8329964--8330026 Score: 81
Period size: 24 Copynumber: 2.9 Consensus size: 21
8329954 CATATATATA
8329964 ATAATATAATAATATAATAAT
1 ATAATATAATAATATAATAAT
8329985 ATAATATAATATATTAATAATAAT
1 ATAATATAATA-A-T-ATAATAAT
* *
8330009 ATAATATAAAAACATAAT
1 ATAATATAATAATATAAT
8330027 TATTACTTAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
21 16 0.43
22 1 0.03
23 2 0.05
24 18 0.49
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (21 bp):
ATAATATAATAATATAATAAT
Found at i:8331686 original size:12 final size:12
Alignment explanation
Indices: 8331671--8331715 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
8331661 GATATCCCAG
8331671 AGAAAATCCAAA
1 AGAAAATCCAAA
* * *
8331683 AGAATATCCCAG
1 AGAAAATCCAAA
8331695 AGAAAATCCAAA
1 AGAAAATCCAAA
*
8331707 AGAATATCC
1 AGAAAATCC
8331716 CAGAAGAGAT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.56, C:0.20, G:0.11, T:0.13
Consensus pattern (12 bp):
AGAAAATCCAAA
Found at i:8331694 original size:24 final size:24
Alignment explanation
Indices: 8331662--8331719 Score: 116
Period size: 24 Copynumber: 2.4 Consensus size: 24
8331652 GAGATCGATG
8331662 ATATCCCAGAGAAAATCCAAAAGA
1 ATATCCCAGAGAAAATCCAAAAGA
8331686 ATATCCCAGAGAAAATCCAAAAGA
1 ATATCCCAGAGAAAATCCAAAAGA
8331710 ATATCCCAGA
1 ATATCCCAGA
8331720 AGAGATCATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.52, C:0.22, G:0.12, T:0.14
Consensus pattern (24 bp):
ATATCCCAGAGAAAATCCAAAAGA
Found at i:8334340 original size:100 final size:104
Alignment explanation
Indices: 8334161--8334410 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
8334151 TAATAATAAC
**
8334161 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
8334226 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
8334263 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
8334326 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* * *
8334368 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
8334411 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 39 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:8334404 original size:56 final size:51
Alignment explanation
Indices: 8334162--8334410 Score: 299
Period size: 50 Copynumber: 4.8 Consensus size: 51
8334152 AATAATAACA
* * ** *
8334162 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCG-TGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCGAT-CTCGG
* *
8334213 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTC-ATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCGATCTCGG
* *
8334263 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCG-TCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCGATCTCGG
* *
8334313 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC--GATC-T-CGG
*
8334368 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
8334411 TTACCCAAAT
Statistics
Matches: 172, Mismatches: 17, Indels: 13
0.85 0.08 0.06
Matches are distributed among these distances:
49 1 0.01
50 92 0.53
51 33 0.19
52 1 0.01
53 2 0.01
54 1 0.01
55 2 0.01
56 40 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCGATCTCGG
Found at i:8334700 original size:40 final size:40
Alignment explanation
Indices: 8334638--8334732 Score: 145
Period size: 40 Copynumber: 2.3 Consensus size: 40
8334628 CTTTTCTTTC
* *
8334638 TTTCTTTCCTTCCTTCCTTCTCTGTTTCGTTTTGCTCTCTG
1 TTTCTTT-CTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
*
8334679 TTTCTTTCTTTCTCCCTTCTCTGTTTTGTTTTGCTCTCTG
1 TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
8334719 TTTCTTTTCTTTCT
1 TTTC-TTTCTTTCT
8334733 TTCTTTGTCA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 34 0.68
41 16 0.32
ACGTcount: A:0.00, C:0.28, G:0.08, T:0.63
Consensus pattern (40 bp):
TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
Found at i:8334756 original size:3 final size:3
Alignment explanation
Indices: 8334748--8334809 Score: 66
Period size: 3 Copynumber: 23.0 Consensus size: 3
8334738 TGTCATATAT
8334748 ATA ATA AT- ATA ATA AT- ATA ATA AT- ATA ATA AT- ATA AT- ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
8334790 ATA TTA ATA ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA
8334810 TAAAAACATA
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
2 14 0.28
3 36 0.72
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
ATA
Found at i:8334757 original size:8 final size:8
Alignment explanation
Indices: 8334746--8334809 Score: 87
Period size: 8 Copynumber: 8.0 Consensus size: 8
8334736 TTTGTCATAT
8334746 ATATAATA
1 ATATAATA
8334754 ATATAATA
1 ATATAATA
8334762 ATATAATA
1 ATATAATA
8334770 ATATAATA
1 ATATAATA
8334778 ATATAAT-
1 ATATAATA
8334785 ATA-ATATA
1 ATATA-ATA
*
8334793 TTAATAATA
1 AT-ATAATA
8334802 ATATAATA
1 ATATAATA
8334810 TAAAAACATA
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
6 1 0.02
7 5 0.10
8 38 0.76
9 5 0.10
10 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
ATATAATA
Found at i:8334761 original size:5 final size:5
Alignment explanation
Indices: 8334742--8334812 Score: 62
Period size: 5 Copynumber: 14.2 Consensus size: 5
8334732 TTTCTTTGTC
8334742 ATAT- ATATA ATA-A TATAATA ATATA ATA-A TATAATA ATATA ATATA
1 ATATA ATATA ATATA -AT-ATA ATATA ATATA -AT-ATA ATATA ATATA
8334788 ATAT- AT-TA ATAATA ATATA ATATA A
1 ATATA ATATA AT-ATA ATATA ATATA A
8334813 AAACATAATT
Statistics
Matches: 57, Mismatches: 0, Indels: 19
0.75 0.00 0.25
Matches are distributed among these distances:
3 1 0.02
4 10 0.18
5 34 0.60
6 10 0.18
7 2 0.04
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:8334810 original size:24 final size:24
Alignment explanation
Indices: 8334742--8334812 Score: 96
Period size: 24 Copynumber: 3.0 Consensus size: 24
8334732 TTTCTTTGTC
8334742 ATATATATAATAAT-ATAATAATATA
1 ATATAT-TAATAATAAT-ATAATATA
8334767 ATA-A-T-ATAATAATATAATATA
1 ATATATTAATAATAATATAATATA
8334788 ATATATTAATAATAATATAATATA
1 ATATATTAATAATAATATAATATA
8334812 A
1 A
8334813 AAACATAATT
Statistics
Matches: 42, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
21 16 0.38
22 4 0.10
23 1 0.02
24 18 0.43
25 3 0.07
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (24 bp):
ATATATTAATAATAATATAATATA
Found at i:8344840 original size:31 final size:32
Alignment explanation
Indices: 8344802--8344861 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
8344792 GTGGTTATTG
8344802 AACTATTTGAAAGTATTCA-TTTAAGTCACTA
1 AACTATTTGAAAGTATTCATTTTAAGTCACTA
* *
8344833 AACTATTTGAAAGTTTTTATTTTAAGTCA
1 AACTATTTGAAAGTATTCATTTTAAGTCA
8344862 ATGGACTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (32 bp):
AACTATTTGAAAGTATTCATTTTAAGTCACTA
Found at i:8346295 original size:30 final size:25
Alignment explanation
Indices: 8346260--8346324 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
8346250 AGGAGGAGAG
8346260 CTTTAGTTTAGGTTTTCTTTCATCT
1 CTTTAGTTTAGGTTTTCTTTCATCT
8346285 CTTTAGTTTAGGTTTTCTTTCATCT
1 CTTTAGTTTAGGTTTTCTTTCATCT
*
8346310 CTTTAGCTTA-GTTTT
1 CTTTAGTTTAGGTTTT
8346325 AGGGTTTTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
24 5 0.13
25 34 0.87
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.60
Consensus pattern (25 bp):
CTTTAGTTTAGGTTTTCTTTCATCT
Found at i:8355941 original size:18 final size:18
Alignment explanation
Indices: 8355917--8355961 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
8355907 TGTCATTCGT
8355917 TTTCAAAACATTATTC-A
1 TTTCAAAACATTATTCAA
*
8355934 TTTACAAATCATTATTCAA
1 TTT-CAAAACATTATTCAA
8355953 TTTCAAAAC
1 TTTCAAAAC
8355962 GTTTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 17 0.71
19 4 0.17
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (18 bp):
TTTCAAAACATTATTCAA
Found at i:8359133 original size:44 final size:44
Alignment explanation
Indices: 8359085--8359193 Score: 148
Period size: 44 Copynumber: 2.5 Consensus size: 44
8359075 ATATCTCAAG
*
8359085 GTCCATGTTTATAACATGGCAATTAA-AGAAGAATTGACGGAAAA
1 GTCCATGTTTATAACATGGCAATTAAGA-AAGAATTGACAGAAAA
*
8359129 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTTACAGAAAA
1 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACAGAAAA
* * * *
8359173 GACCATGGTTAGACCATGGCA
1 GTCCATGTTTATAACATGGCA
8359194 GTAAGTGTGC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 57 0.98
45 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (44 bp):
GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACAGAAAA
Found at i:8359280 original size:49 final size:49
Alignment explanation
Indices: 8359204--8359385 Score: 219
Period size: 49 Copynumber: 3.7 Consensus size: 49
8359194 GTAAGTGTGC
8359204 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACCGAGGAGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-CGAGGAGTGT
* * **
8359254 TAGTGTAAGACCAT-TCTGGGACATGGCATCGGCACGGAC-AGCGAAAAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGAG-G-AGTGT
* * * * *
8359303 CAGTGTAAGACCATGTCTAGGACATGACATCGGCTCA-A-GATGAGTGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGAGGAGTGT
*
8359350 CAGTGTAAGACCATGTCTGGGACATAGCATCGGCAC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
8359386 CGATATGTGA
Statistics
Matches: 111, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
47 36 0.32
48 3 0.03
49 41 0.37
50 31 0.28
ACGTcount: A:0.29, C:0.22, G:0.30, T:0.19
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGAGGAGTGT
Found at i:8362444 original size:22 final size:21
Alignment explanation
Indices: 8362405--8362452 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
8362395 AAAAAAACAG
8362405 AAAAAAGCAAAAAACGCAAAA
1 AAAAAAGCAAAAAACGCAAAA
* *
8362426 AAAAGAAGGAAAAAGCGCAAAA
1 AAAA-AAGCAAAAAACGCAAAA
8362448 AAAAA
1 AAAAA
8362453 GTTGTCTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.75, C:0.10, G:0.15, T:0.00
Consensus pattern (21 bp):
AAAAAAGCAAAAAACGCAAAA
Found at i:8362508 original size:6 final size:6
Alignment explanation
Indices: 8362497--8362531 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
8362487 CCTATTATTG
8362497 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
8362532 CACAAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:8368016 original size:31 final size:31
Alignment explanation
Indices: 8367979--8368040 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
8367969 AGATAATTTT
8367979 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
8368010 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
8368041 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:8371929 original size:25 final size:26
Alignment explanation
Indices: 8371899--8371956 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 26
8371889 AGACAAAATA
*
8371899 TAATCCTAACTTCTTAACTTAAG-TC
1 TAATCCTAACTTCTAAACTTAAGTTC
* *
8371924 TAATCCAAATTTCTAAACTTAAGTTC
1 TAATCCTAACTTCTAAACTTAAGTTC
8371950 TAATCCT
1 TAATCCT
8371957 GGTCTAGTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.34, C:0.22, G:0.03, T:0.40
Consensus pattern (26 bp):
TAATCCTAACTTCTAAACTTAAGTTC
Found at i:8373719 original size:22 final size:22
Alignment explanation
Indices: 8373671--8373716 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
8373661 TTTGTATGGC
*
8373671 ATTATAAGCATCATAATAATCT
1 ATTATAAGAATCATAATAATCT
8373693 ATTATAAGAAT-ATATATAAT-T
1 ATTATAAGAATCATA-ATAATCT
8373714 ATT
1 ATT
8373717 TATTTGTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (22 bp):
ATTATAAGAATCATAATAATCT
Found at i:8380498 original size:13 final size:13
Alignment explanation
Indices: 8380480--8380504 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8380470 GTCAATTTGA
8380480 TATTACTTATCCG
1 TATTACTTATCCG
8380493 TATTACTTATCC
1 TATTACTTATCC
8380505 ATGTAAAGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.48
Consensus pattern (13 bp):
TATTACTTATCCG
Found at i:8383253 original size:18 final size:18
Alignment explanation
Indices: 8383219--8383267 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
8383209 GCAATAAAAA
8383219 AACGTTTGGAAATTGAAT
1 AACGTTTGGAAATTGAAT
*
8383237 AACGATTTGTAAA-TGAAT
1 AACG-TTTGGAAATTGAAT
*
8383255 AATGTTTTGGAAA
1 AACG-TTTGGAAA
8383268 CGAACGACAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 19 0.73
19 7 0.27
ACGTcount: A:0.41, C:0.04, G:0.20, T:0.35
Consensus pattern (18 bp):
AACGTTTGGAAATTGAAT
Found at i:8389076 original size:126 final size:126
Alignment explanation
Indices: 8388851--8389092 Score: 315
Period size: 126 Copynumber: 1.9 Consensus size: 126
8388841 GTCTTGTGCT
* * ** *
8388851 AGGCCGTGTGACTCACTATTTTCTATTAAGAACCATACGGGCCAAGGACACGGGCATGTGTCCAA
1 AGGCCGTGTAACTCACTATTTTCCATTAAGAACCATACGAACCAAGGACACGGGCATGCGTCCAA
** * * * * *
8388916 GCTGTGTGACTTACTGTTTGCCATTAAGGACCACATGGGCCGGGGACACAGACATCTGCCC
66 GCCCTGTGACTCAATGTTTGCCATTAAGGACCACATGAGCCAGAGACACAGACATCTGCCC
* *
8388977 AGGCCGTGTAAGTCACTATTTTCCATTAA-AGACCATACGAACCAAGGACACGGGCGTGCGTCCA
1 AGGCCGTGTAACTCACTATTTTCCATTAAGA-ACCATACGAACCAAGGACACGGGCATGCGTCCA
* **
8389041 TGCCCTGTGACTCAATGTTTGCCATTTTGGACCACATGAGCCAGAGACACAG
65 AGCCCTGTGACTCAATGTTTGCCATTAAGGACCACATGAGCCAGAGACACAG
8389093 GTGTGTTCCA
Statistics
Matches: 98, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
125 1 0.01
126 97 0.99
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (126 bp):
AGGCCGTGTAACTCACTATTTTCCATTAAGAACCATACGAACCAAGGACACGGGCATGCGTCCAA
GCCCTGTGACTCAATGTTTGCCATTAAGGACCACATGAGCCAGAGACACAGACATCTGCCC
Found at i:8397753 original size:21 final size:22
Alignment explanation
Indices: 8397728--8397768 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
8397718 TTTTCTATAG
8397728 TCTTTTCCA-TTAT-TTTTATTA
1 TCTTTT-CATTTATCTTTTATTA
8397749 TCTTTTCATTTATCTTTTAT
1 TCTTTTCATTTATCTTTTAT
8397769 GTTTATTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 10 0.56
22 6 0.33
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (22 bp):
TCTTTTCATTTATCTTTTATTA
Found at i:8399951 original size:45 final size:44
Alignment explanation
Indices: 8399896--8400041 Score: 136
Period size: 45 Copynumber: 3.3 Consensus size: 44
8399886 CACTGGGCTA
* *
8399896 TGGATACACAACAAAATTTTGTAAATAAAAACTGCCATTGGATTG
1 TGGATGCACAACAAAATTTTGTAGATAAAAACTGCCATTGG-TTG
*** *
8399941 TGGATGCACAACAAAATTTAACAGATAAAATCTGCCACTTGGTTG
1 TGGATGCACAACAAAATTTTGTAGATAAAAACTGCCA-TTGGTTG
* * ** *
8399986 TGGATGCAGAAC---ATGTTTGTAGGTAAAAGTTGTCATTGGGTTG
1 TGGATGCACAACAAAAT-TTTGTAGATAAAAACTGCCATT-GGTTG
8400029 TGGATGCACAACA
1 TGGATGCACAACA
8400042 TATTTGCAGT
Statistics
Matches: 82, Mismatches: 15, Indels: 9
0.77 0.14 0.08
Matches are distributed among these distances:
42 4 0.05
43 29 0.35
45 45 0.55
46 4 0.05
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (44 bp):
TGGATGCACAACAAAATTTTGTAGATAAAAACTGCCATTGGTTG
Found at i:8400220 original size:15 final size:15
Alignment explanation
Indices: 8400165--8400221 Score: 69
Period size: 15 Copynumber: 3.5 Consensus size: 15
8400155 GCTTATAATA
8400165 AATCAATACGGTAGC
1 AATCAATACGGTAGC
*
8400180 AATTAATATGCGTGTAGC
1 AATCAATA--CG-GTAGC
8400198 AGATCAATACGGTAGC
1 A-ATCAATACGGTAGC
8400214 AATCAATA
1 AATCAATA
8400222 TGCTTATAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
15 14 0.39
16 6 0.17
17 4 0.11
18 6 0.17
19 6 0.17
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (15 bp):
AATCAATACGGTAGC
Found at i:8400239 original size:19 final size:19
Alignment explanation
Indices: 8400215--8400274 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
8400205 TACGGTAGCA
8400215 ATCAATATGCTTATAACAG
1 ATCAATATGCTTATAACAG
*
8400234 ATCAATA--C--AGTAGCA-
1 ATCAATATGCTTA-TAACAG
*
8400249 ATTAATATGCTTATAACAG
1 ATCAATATGCTTATAACAG
8400268 ATCAATA
1 ATCAATA
8400275 CGGTAGTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 12
0.66 0.09 0.26
Matches are distributed among these distances:
15 7 0.23
16 4 0.13
17 2 0.06
18 4 0.13
19 14 0.45
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (19 bp):
ATCAATATGCTTATAACAG
Found at i:8400351 original size:34 final size:34
Alignment explanation
Indices: 8400153--8400343 Score: 256
Period size: 34 Copynumber: 5.6 Consensus size: 34
8400143 GCAATATGAC
* *
8400153 ATGCTTATAATAAATCAATACGGTAGCAATTAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* * * *
8400187 ATGCGTGTAGCAGATCAATACGGTAGCAATCAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
*
8400221 ATGCTTATAACAGATCAATACAGTAGCAATTAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* *
8400255 ATGCTTATAACAGATCAATACGGTAGTAATTTAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* * *
8400289 ATGCTTACAATAGATCAATATGGTAGCAATTAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* *
8400323 ATGCTTCTAACAAATCAATAC
1 ATGCTTATAACAGATCAATAC
8400344 ATTAGCAAAA
Statistics
Matches: 133, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 133 1.00
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (34 bp):
ATGCTTATAACAGATCAATACGGTAGCAATTAAT
Found at i:8405770 original size:40 final size:40
Alignment explanation
Indices: 8405692--8405828 Score: 197
Period size: 40 Copynumber: 3.5 Consensus size: 40
8405682 CGTTTGGACA
*
8405692 AAAAACGCCGCTATAGATCAAGCATTAGCGGCA-C-TTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGG-AGCTTTTTG
*
8405731 AAAAACGCAGCTATAGATCGAGCATTAGCGGAGCTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGAGCTTTTTG
* * *
8405771 AAAAACGCCGCCATCGATCGAGCATTAGCGGTGCTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGAGCTTTTTG
*
8405811 AAAAATGCCGCTATAGAT
1 AAAAACGCCGCTATAGAT
8405829 AAAAAAGCGC
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 30 0.34
40 56 0.64
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCGAGCATTAGCGGAGCTTTTTG
Found at i:8405992 original size:40 final size:40
Alignment explanation
Indices: 8405881--8406029 Score: 156
Period size: 40 Copynumber: 3.8 Consensus size: 40
8405871 AGCTTTAGTG
* * * *
8405881 GCATTAGCGGCACTTTTTGAATAACGCCGCTACAGATCGA
1 GCATTAGCGGCACTTTTTGAAAAATGCCGCTATAGATCAA
* * * *
8405921 GCATTAGTGGCGCTTCTTGAAAAGTGCCGCTATAGATCAA
1 GCATTAGCGGCACTTTTTGAAAAATGCCGCTATAGATCAA
* ** * *
8405961 GCATTAGCGGCGCTTTTTGAAAAATTTCGCTATAGGTCTA
1 GCATTAGCGGCACTTTTTGAAAAATGCCGCTATAGATCAA
* *
8406001 CCATTAGCGGCACGTTTT-AAAAATGCCGC
1 GCATTAGCGGCACTTTTTGAAAAATGCCGC
8406030 AAAAAAATTA
Statistics
Matches: 89, Mismatches: 20, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
39 9 0.10
40 80 0.90
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (40 bp):
GCATTAGCGGCACTTTTTGAAAAATGCCGCTATAGATCAA
Found at i:8408783 original size:43 final size:43
Alignment explanation
Indices: 8408736--8408904 Score: 207
Period size: 43 Copynumber: 4.0 Consensus size: 43
8408726 TATTTGCTGC
* * * *
8408736 ATTTGTGAAAAAAACACCACTAAAGGTCATGTTCTTTAGCGGT
1 ATTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGAT
** *
8408779 ATTTGTGATAAAAGCGTCGCTAAAGATCATGTTCTTTAGCGAT
1 ATTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGAT
* * *
8408822 GTTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCAACG
1 ATTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGA-T
**
8408866 A-TTGTGATAAAAGTGCCGCTAAAGGTCATGTTC-TTAGCG
1 ATTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCG
8408905 GAATTTATAT
Statistics
Matches: 108, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
42 5 0.05
43 103 0.95
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (43 bp):
ATTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGAT
Found at i:8408857 original size:86 final size:84
Alignment explanation
Indices: 8408737--8408904 Score: 230
Period size: 86 Copynumber: 2.0 Consensus size: 84
8408727 ATTTGCTGCA
* *
8408737 TTTGTGAAAAAAACACCACTAAAGGTCATGTTCTTTAGC-GGTATTTGTGATAAAAGCGTCGCTA
1 TTTGTGAAAAAAACACCACTAAAGGTCATGTTCTTTAGCACG-A-TTGTGATAAAAGCGCCGCTA
8408801 AAGATCATGTTCTTTAGCGATG
64 AAGATCATGTTC-TTAGCGATG
* * * *
8408823 TTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCAACGATTGTGATAAAAGTGCCGCTAA
1 TTTGTGAAAAAAACACCACTAAAGGTCATGTTCTTTAGC-ACGATTGTGATAAAAGCGCCGCTAA
*
8408888 AGGTCATGTTCTTAGCG
65 AGATCATGTTCTTAGCG
8408905 GAATTTATAT
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
85 6 0.08
86 65 0.89
87 1 0.01
88 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (84 bp):
TTTGTGAAAAAAACACCACTAAAGGTCATGTTCTTTAGCACGATTGTGATAAAAGCGCCGCTAAA
GATCATGTTCTTAGCGATG
Found at i:8416690 original size:180 final size:180
Alignment explanation
Indices: 8416388--8416729 Score: 533
Period size: 180 Copynumber: 1.9 Consensus size: 180
8416378 CCTTATGTCA
* * *
8416388 TTCAACAAATGCTCAAGGCATCTCTCAAGTATTCATATCTTTTAGCACCCTCAACCTTTTTTGGT
1 TTCAACAAATGCTAAAGGCACCTCTCAAGTATTCATATCTTTTAGCACCCTCAACCTCTTTTGGT
* * *
8416453 TCAATAGTAGATTTGTAGCAAAAATAATATTTCTAAGAGGATGACTCTTTTGAATCCTCAATGAA
66 TCAATAGTAGACTTGTAGCAAAAATAACATTACTAAGAGGATGACTCTTTTGAATCCTCAATGAA
8416518 GGTCTCATGGTAATCGATACATCT-TCAATCTAAGAGGATGGTAAAAGGTC
131 GGTCTCATGGTAATCGATACATCTGT-AATCTAAGAGGATGGTAAAAGGTC
* * * * *
8416568 TTCAACAAATGTTAAAGGCACCTCTCAGGTATTCATATCTTTTAGCATCCTTAACCTCTTTTGTT
1 TTCAACAAATGCTAAAGGCACCTCTCAAGTATTCATATCTTTTAGCACCCTCAACCTCTTTTGGT
*
8416633 TCAATAGTAGACTTGTAGCACAAATAACATTACTAAGAGGATGACTCTTTTGAATCCTCAATGAA
66 TCAATAGTAGACTTGTAGCAAAAATAACATTACTAAGAGGATGACTCTTTTGAATCCTCAATGAA
* * *
8416698 GGTTTCATGGTAGTTGATACATCTGTAATCTA
131 GGTCTCATGGTAATCGATACATCTGTAATCTA
8416730 GTGTTCAAGT
Statistics
Matches: 146, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
180 145 0.99
181 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (180 bp):
TTCAACAAATGCTAAAGGCACCTCTCAAGTATTCATATCTTTTAGCACCCTCAACCTCTTTTGGT
TCAATAGTAGACTTGTAGCAAAAATAACATTACTAAGAGGATGACTCTTTTGAATCCTCAATGAA
GGTCTCATGGTAATCGATACATCTGTAATCTAAGAGGATGGTAAAAGGTC
Found at i:8421510 original size:5 final size:5
Alignment explanation
Indices: 8421500--8421529 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
8421490 TGAAATTGTA
*
8421500 TAAAT TAAAT TAAAT AAAAT TAAAT TAAAT
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT
8421530 CTCACTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
TAAAT
Found at i:8421521 original size:15 final size:15
Alignment explanation
Indices: 8421501--8421529 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8421491 GAAATTGTAT
8421501 AAATTAAATTAAATA
1 AAATTAAATTAAATA
8421516 AAATTAAATTAAAT
1 AAATTAAATTAAAT
8421530 CTCACTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AAATTAAATTAAATA
Found at i:8425933 original size:31 final size:31
Alignment explanation
Indices: 8425898--8425962 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
8425888 CAAGAAACCT
8425898 GATTGTAGTTAATTGGTTGACGAGAACCCAA
1 GATTGTAGTTAATTGGTTGACGAGAACCCAA
8425929 GATTGTAGTTAATTGGTTGACGAGAACCCAA
1 GATTGTAGTTAATTGGTTGACGAGAACCCAA
8425960 GAT
1 GAT
8425963 GGACACTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.29
Consensus pattern (31 bp):
GATTGTAGTTAATTGGTTGACGAGAACCCAA
Found at i:8429521 original size:39 final size:40
Alignment explanation
Indices: 8429467--8429549 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
8429457 GAAGCAGTAG
* *
8429467 TAGGAGTTGTAACACCC-TAACTC-GTCTCTGTCGCCAGAT
1 TAGGAGTTGTAACACCCATAAC-CAGTCTCCGCCGCCAGAT
*
8429506 TAGGAGTTGTAACACCCATAACCAGTCTCCGCCGTCAGAT
1 TAGGAGTTGTAACACCCATAACCAGTCTCCGCCGCCAGAT
8429546 TAGG
1 TAGG
8429550 GTTATAGAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
39 18 0.46
40 21 0.54
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TAGGAGTTGTAACACCCATAACCAGTCTCCGCCGCCAGAT
Found at i:8430550 original size:25 final size:25
Alignment explanation
Indices: 8430516--8430567 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
8430506 TTCGAAAGTA
8430516 ATCCAAACGACAGCTCAAATCCGAC
1 ATCCAAACGACAGCTCAAATCCGAC
*
8430541 ATCCAAACGACAGCTCAAATCTGAC
1 ATCCAAACGACAGCTCAAATCCGAC
8430566 AT
1 AT
8430568 TCTACAAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.40, C:0.33, G:0.12, T:0.15
Consensus pattern (25 bp):
ATCCAAACGACAGCTCAAATCCGAC
Found at i:8431213 original size:45 final size:45
Alignment explanation
Indices: 8431164--8431366 Score: 241
Period size: 45 Copynumber: 4.5 Consensus size: 45
8431154 GAAGTGATGC
* * *
8431164 CATAGTATCTTTCAACTATGGTCTTATTCATAT-CGGTTTTAATGT
1 CATAGTATCTTTCAACTATGGTCTTATTCATTTCCAG-TATAATGT
* *
8431209 CATAGCATCTTTCAACTATGGTCTTATACATTTCCAGTATAATGT
1 CATAGTATCTTTCAACTATGGTCTTATTCATTTCCAGTATAATGT
* * **
8431254 CATAGTATCTTTCAACTATGGTTTTATTCA-TTCCAGTTTAATAC
1 CATAGTATCTTTCAACTATGGTCTTATTCATTTCCAGTATAATGT
** *
8431298 CATAGTATCTTTCAACTATGGTCTT-TCTCATTTCGGGTATACTGT
1 CATAGTATCTTTCAACTATGGTCTTAT-TCATTTCCAGTATAATGT
* *
8431343 CATGGTATCTTTCAACCATGGTCT
1 CATAGTATCTTTCAACTATGGTCT
8431367 ATCTTGTTTC
Statistics
Matches: 135, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
43 1 0.01
44 38 0.28
45 94 0.70
46 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.43
Consensus pattern (45 bp):
CATAGTATCTTTCAACTATGGTCTTATTCATTTCCAGTATAATGT
Found at i:8431338 original size:89 final size:90
Alignment explanation
Indices: 8431164--8431366 Score: 268
Period size: 89 Copynumber: 2.3 Consensus size: 90
8431154 GAAGTGATGC
* **
8431164 CATAGTATCTTTCAACTATGGTCTTATTCATATCGGTTTTAATGTCATAGCATCTTTCAACTATG
1 CATAGTATCTTTCAACTATGGTCTTATTCATATCAGTTTTAATACCATAGCATCTTTCAACTATG
8431229 GTCTTATACATTTCCAGTATAATGT
66 GTCTTATACATTTCCAGTATAATGT
* *
8431254 CATAGTATCTTTCAACTATGGTTTTATTCAT-TCCAG-TTTAATACCATAGTATCTTTCAACTAT
1 CATAGTATCTTTCAACTATGGTCTTATTCATAT-CAGTTTTAATACCATAGCATCTTTCAACTAT
* ** *
8431317 GGTCTT-TCTCATTTCGGGTATACTGT
65 GGTCTTAT-ACATTTCCAGTATAATGT
* *
8431343 CATGGTATCTTTCAACCATGGTCT
1 CATAGTATCTTTCAACTATGGTCT
8431367 ATCTTGTTTC
Statistics
Matches: 99, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
88 1 0.01
89 66 0.67
90 32 0.32
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.43
Consensus pattern (90 bp):
CATAGTATCTTTCAACTATGGTCTTATTCATATCAGTTTTAATACCATAGCATCTTTCAACTATG
GTCTTATACATTTCCAGTATAATGT
Found at i:8431880 original size:21 final size:21
Alignment explanation
Indices: 8431854--8431912 Score: 118
Period size: 21 Copynumber: 2.8 Consensus size: 21
8431844 GGTTCGCTGT
8431854 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTATTGG
8431875 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTATTGG
8431896 ATTGGATTAGAGGTGTA
1 ATTGGATTAGAGGTGTA
8431913 ATAGCAAATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.25, C:0.00, G:0.37, T:0.37
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTATTGG
Found at i:8432170 original size:18 final size:17
Alignment explanation
Indices: 8432149--8432183 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8432139 TTATTATTTA
*
8432149 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
8432167 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
8432184 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:8432177 original size:28 final size:27
Alignment explanation
Indices: 8432107--8432179 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
8432097 TTTATTATCA
*
8432107 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
8432135 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
8432162 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
8432180 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:8432296 original size:144 final size:147
Alignment explanation
Indices: 8432068--8432339 Score: 478
Period size: 144 Copynumber: 1.9 Consensus size: 147
8432058 ATGATTATTG
*
8432068 TTATTGTTATTTAAATTTTAATAAGAATATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAG-A-ATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
8432133 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
64 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
8432198 AGAAATTTGTTTTGGTAAA
129 AGAAATTTGTTTTGGTAAA
*
8432217 TTATT-TTATTTAAATTTTAATAAG-A-TTAATATCAATAATAAATAATTTAATCATATTTAAAC
1 TTATTGTTATTTAAATTTTAATAAGAATTTAATATCAAAAATAAATAATTTAATCATATTTAAAC
8432279 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
8432340 ATATTCTTAT
Statistics
Matches: 120, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
144 95 0.79
145 1 0.01
148 19 0.16
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TTATTGTTATTTAAATTTTAATAAGAATTTAATATCAAAAATAAATAATTTAATCATATTTAAAC
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
AAATTTGTTTTGGTAAA
Found at i:8432314 original size:18 final size:17
Alignment explanation
Indices: 8432293--8432327 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8432283 TTATTATTAA
*
8432293 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
8432311 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
8432328 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:8432371 original size:54 final size:53
Alignment explanation
Indices: 8432313--8432491 Score: 117
Period size: 55 Copynumber: 3.1 Consensus size: 53
8432303 ATTAAAATAT
*
8432313 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATAT-AATTTACTCAAAAC
** * * * * *
8432367 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATATAATATAATTAAAAT
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATAAT-TTACTCAAA-
*
8432431 AT
52 AC
*
8432433 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATCAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATAT-AATTTACTCAAAAC
8432487 ATAAT
1 ATAAT
8432492 ATATGATTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (53 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATAATTTACTCAAAAC
Found at i:8432373 original size:61 final size:61
Alignment explanation
Indices: 8432308--8432495 Score: 181
Period size: 61 Copynumber: 3.1 Consensus size: 61
8432298 TTTTAATTAA
* *
8432308 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATAAATTTACTCAAATCAT
* * * * * * * * * *
8432369 AATATATGATACT-GTAAAA-T-ATAA-AATAACATAATTATTAT-TAAATATAAT-ATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAATAATTA-AT-ATTCTTATATAAATTTACTCA-AATCAT
*
8432428 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATCAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATAAATTTACTCAAATCAT
8432489 AATATAT
1 AATATAT
8432496 GATTATAACT
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
58 6 0.06
59 29 0.31
60 16 0.17
61 37 0.39
62 6 0.06
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATAAATTTACTCAAATCAT
Found at i:8432406 original size:120 final size:120
Alignment explanation
Indices: 8432276--8432498 Score: 410
Period size: 120 Copynumber: 1.9 Consensus size: 120
8432266 ATCATATTTA
* *
8432276 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
8432341 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATCAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
8432396 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
8432461 TATTCTTATATCAATTTACTCAAATCATAATATATGAT
66 TATTCTTATATCAATTTACTCAAACCATAATATATGAT
8432499 TATAACTAAT
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 99 1.00
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATCAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
Found at i:8432434 original size:18 final size:17
Alignment explanation
Indices: 8432413--8432447 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8432403 TTATTATTAA
8432413 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
8432431 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
8432448 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:8432510 original size:17 final size:16
Alignment explanation
Indices: 8432488--8432534 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
8432478 ACTCAAATCA
8432488 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
8432505 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
8432519 TAAATATATGATTTAA
1 T-AATATATGATTTAA
8432535 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Done.