Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 31 of 230
Found at i:8432535 original size:17 final size:17
Alignment explanation
Indices: 8432507--8432540 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8432497 ATTATAACTA
*
8432507 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
8432524 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
8432541 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:8432683 original size:93 final size:93
Alignment explanation
Indices: 8432573--8432749 Score: 259
Period size: 93 Copynumber: 1.9 Consensus size: 93
8432563 GATTATAGTT
* * * *
8432573 TATGAATTTGTATAATTTAAAATAA-TAATTTTTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
*
8432636 ATAAAATTCTTGATAATAAAAATTTGGGTA
64 ATAAAATTCTTAATAATAAAAATTTGGGTA
* *
8432666 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
8432731 AAAATTCTTAATAATAAAA
66 AAAATTCTTAATAATAAAA
8432750 TGTTCTTATA
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
93 71 0.95
94 4 0.05
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (93 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAAATTTGGGTA
Found at i:8434178 original size:11 final size:11
Alignment explanation
Indices: 8434164--8434190 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
8434154 AAAAATCAAT
8434164 ACAAAAGTTTC
1 ACAAAAGTTTC
8434175 ACAAAAGTTTC
1 ACAAAAGTTTC
8434186 ACAAA
1 ACAAA
8434191 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:8434981 original size:335 final size:335
Alignment explanation
Indices: 8434371--8435043 Score: 1337
Period size: 335 Copynumber: 2.0 Consensus size: 335
8434361 TATGGGTTCA
8434371 AATAAAATTATGGAGCAAACAACATGCAATAATAATTCTATTGTGCACCCTTACAGGATAGAACG
1 AATAAAATTATGGAGCAAACAACATGCAATAATAATTCTATTGTGCACCCTTACAGGATAGAACG
8434436 ATGGACTCCTAAGTATTCCCCATCTAAGTTTTAATAAGCCAAAGCATCTTTCAATGACATTACGT
66 ATGGACTCCTAAGTATTCCCCATCTAAGTTTTAATAAGCCAAAGCATCTTTCAATGACATTACGT
*
8434501 GCTGAGGCATGTTTCATATTAAAAAACTCTTGCGGAGAACTTGGCTGATAACCCTGACGCCACTC
131 GCTGAGGCATGTTTCATATTAAAAAACTCTTGCAGAGAACTTGGCTGATAACCCTGACGCCACTC
8434566 GTTCAAATGATATCGTTGTCCTCTAAATGGTGCAAGAAATCCCTCACAATTTGTGTATCCAGCAT
196 GTTCAAATGATATCGTTGTCCTCTAAATGGTGCAAGAAATCCCTCACAATTTGTGTATCCAGCAT
8434631 CAACTAGATAATAACAACCTATAAAATAAGTTTCATATTAAAAAATGATTAATTCAGCACACAAA
261 CAACTAGATAATAACAACCTATAAAATAAGTTTCATATTAAAAAATGATTAATTCAGCACACAAA
8434696 GTGTGATCTT
326 GTGTGATCTT
8434706 AATAAAATTATGGAGCAAACAACATGCAATAATAATTCTATTGTGCACCCTTACAGGATAGAACG
1 AATAAAATTATGGAGCAAACAACATGCAATAATAATTCTATTGTGCACCCTTACAGGATAGAACG
8434771 ATGGACTCCTAAGTATTCCCCATCTAAGTTTTAATAAGCCAAAGCATCTTTCAATGACATTACGT
66 ATGGACTCCTAAGTATTCCCCATCTAAGTTTTAATAAGCCAAAGCATCTTTCAATGACATTACGT
8434836 GCTGAGGCATGTTTCATATTAAAAAACTCTTGCAGAGAACTTGGCTGATAACCCTGACGCCACTC
131 GCTGAGGCATGTTTCATATTAAAAAACTCTTGCAGAGAACTTGGCTGATAACCCTGACGCCACTC
8434901 GTTCAAATGATATCGTTGTCCTCTAAATGGTGCAAGAAATCCCTCACAATTTGTGTATCCAGCAT
196 GTTCAAATGATATCGTTGTCCTCTAAATGGTGCAAGAAATCCCTCACAATTTGTGTATCCAGCAT
8434966 CAACTAGATAATAACAACCTATAAAATAAGTTTCATATTAAAAAATGATTAATTCAGCACACAAA
261 CAACTAGATAATAACAACCTATAAAATAAGTTTCATATTAAAAAATGATTAATTCAGCACACAAA
8435031 GTGTGATCTT
326 GTGTGATCTT
8435041 AAT
1 AAT
8435044 GAATAAATCA
Statistics
Matches: 337, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
335 337 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (335 bp):
AATAAAATTATGGAGCAAACAACATGCAATAATAATTCTATTGTGCACCCTTACAGGATAGAACG
ATGGACTCCTAAGTATTCCCCATCTAAGTTTTAATAAGCCAAAGCATCTTTCAATGACATTACGT
GCTGAGGCATGTTTCATATTAAAAAACTCTTGCAGAGAACTTGGCTGATAACCCTGACGCCACTC
GTTCAAATGATATCGTTGTCCTCTAAATGGTGCAAGAAATCCCTCACAATTTGTGTATCCAGCAT
CAACTAGATAATAACAACCTATAAAATAAGTTTCATATTAAAAAATGATTAATTCAGCACACAAA
GTGTGATCTT
Found at i:8436789 original size:15 final size:15
Alignment explanation
Indices: 8436769--8436799 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8436759 ATATTATGTA
8436769 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
8436784 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
8436799 T
1 T
8436800 TGAAGGTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.35
Consensus pattern (15 bp):
TAATTGAGGTAAAAT
Found at i:8440602 original size:5 final size:5
Alignment explanation
Indices: 8440594--8440620 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
8440584 TTATTTTATT
8440594 TTAAC TTAAC TTAAC TTAAC TTAAC TT
1 TTAAC TTAAC TTAAC TTAAC TTAAC TT
8440621 TTATTTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (5 bp):
TTAAC
Found at i:8443563 original size:47 final size:47
Alignment explanation
Indices: 8443494--8443585 Score: 184
Period size: 47 Copynumber: 2.0 Consensus size: 47
8443484 TCAATGTTAA
8443494 GTTAAATGTTAGTAGGCTATAAATATAACTTTATAAGCCTTTCATAG
1 GTTAAATGTTAGTAGGCTATAAATATAACTTTATAAGCCTTTCATAG
8443541 GTTAAATGTTAGTAGGCTATAAATATAACTTTATAAGCCTTTCAT
1 GTTAAATGTTAGTAGGCTATAAATATAACTTTATAAGCCTTTCAT
8443586 TTCAGATTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (47 bp):
GTTAAATGTTAGTAGGCTATAAATATAACTTTATAAGCCTTTCATAG
Found at i:8449823 original size:2 final size:2
Alignment explanation
Indices: 8449816--8449855 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
8449806 TCATCTTACC
8449816 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8449856 TTTGTCTTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8463530 original size:15 final size:16
Alignment explanation
Indices: 8463507--8463555 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
8463497 TAGTGTATTT
8463507 AATATATTATATTTTAA
1 AATA-ATTATATTTTAA
**
8463524 AA-AATTATATAATAA
1 AATAATTATATTTTAA
8463539 AATAATT-T-TTTTAA
1 AATAATTATATTTTAA
8463553 AAT
1 AAT
8463556 TAATACGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
14 7 0.26
15 13 0.48
16 5 0.19
17 2 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AATAATTATATTTTAA
Found at i:8465619 original size:18 final size:18
Alignment explanation
Indices: 8465593--8465628 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8465583 AAGACATAAC
8465593 CAATCCATTTCCAACTCA
1 CAATCCATTTCCAACTCA
*
8465611 CAATTCATTTCCAACTCA
1 CAATCCATTTCCAACTCA
8465629 TACCTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.31
Consensus pattern (18 bp):
CAATCCATTTCCAACTCA
Found at i:8466147 original size:15 final size:15
Alignment explanation
Indices: 8466127--8466157 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8466117 AACATAGTTT
8466127 GTACCAAAATGACTC
1 GTACCAAAATGACTC
8466142 GTACCAAAATGACTC
1 GTACCAAAATGACTC
8466157 G
1 G
8466158 ACCTAGATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.19
Consensus pattern (15 bp):
GTACCAAAATGACTC
Found at i:8466458 original size:17 final size:17
Alignment explanation
Indices: 8466413--8466448 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
8466403 GTCATAATAA
8466413 ATATATATCATTATACC
1 ATATATATCATTATACC
8466430 ATATATATCATTATACC
1 ATATATATCATTATACC
8466447 AT
1 AT
8466449 TTGAATCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (17 bp):
ATATATATCATTATACC
Found at i:8469393 original size:21 final size:21
Alignment explanation
Indices: 8469363--8469427 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
8469353 AAACTTGGCC
8469363 TTTTG-GTTTAAAGTTTAGGG
1 TTTTGAGTTTAAAGTTTAGGG
* ***
8469383 TTTTGAGTTTAAGGTTTAATA
1 TTTTGAGTTTAAAGTTTAGGG
* *
8469404 TTTTGAGTTTAGAGTTCAGGG
1 TTTTGAGTTTAAAGTTTAGGG
8469425 TTT
1 TTT
8469428 AGGGTTCAGG
Statistics
Matches: 34, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
20 5 0.15
21 29 0.85
ACGTcount: A:0.22, C:0.02, G:0.26, T:0.51
Consensus pattern (21 bp):
TTTTGAGTTTAAAGTTTAGGG
Found at i:8469446 original size:19 final size:20
Alignment explanation
Indices: 8469422--8469459 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
8469412 TTAGAGTTCA
*
8469422 GGGTTTAGGGTTC-AGGTTT
1 GGGTTTAAGGTTCAAGGTTT
8469441 GGGTTTAAGGTTCAAGGTT
1 GGGTTTAAGGTTCAAGGTT
8469460 CAAGATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.16, C:0.05, G:0.39, T:0.39
Consensus pattern (20 bp):
GGGTTTAAGGTTCAAGGTTT
Found at i:8469931 original size:20 final size:20
Alignment explanation
Indices: 8469898--8469948 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
8469888 TTTAGATTTA
** *
8469898 GGGTTCAAGTTTCAATGTTC
1 GGGTTCAAAATTCAAAGTTC
8469918 GGGTTCAAAATTCAAAGTTC
1 GGGTTCAAAATTCAAAGTTC
* *
8469938 GAGTTAAAAAT
1 GGGTTCAAAAT
8469949 ATTGTTAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
GGGTTCAAAATTCAAAGTTC
Found at i:8472147 original size:49 final size:49
Alignment explanation
Indices: 8472070--8472183 Score: 156
Period size: 49 Copynumber: 2.3 Consensus size: 49
8472060 AACTTGAACA
* * * * *
8472070 CGTGACCACATAACCACTGTCAACTGGGCTCTTGAGTTATACTCTAACC
1 CGTGACCGCATAACCACTGCCAAATGGGCACTCGAGTTATACTCTAACC
* *
8472119 CGTGACTGCATAACCACTGCCAAATGGGCACTCGAGTTATACTCTAATC
1 CGTGACCGCATAACCACTGCCAAATGGGCACTCGAGTTATACTCTAACC
*
8472168 CGTGACCGCAGAACCA
1 CGTGACCGCATAACCA
8472184 TCGTCAACTA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
49 56 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (49 bp):
CGTGACCGCATAACCACTGCCAAATGGGCACTCGAGTTATACTCTAACC
Found at i:8485684 original size:56 final size:58
Alignment explanation
Indices: 8485622--8485736 Score: 155
Period size: 56 Copynumber: 2.0 Consensus size: 58
8485612 TACACTAGTA
8485622 GTCACTCAACTATTAGT-ATTTC-TTTT-GTCACCCAACTATAAAAAAGTTACAAAATG
1 GTCACTCAACTATTAGTAATTTCTTTTTGGTCACCCAACTAT-AAAAAGTTACAAAATG
* * *
8485678 GTCACTCAACTATTAGTAAATTTCTTTTTTGGTCACCCAAGTATGAAAAGTTATAAAAT
1 GTCACTCAACTATTAGT-AATTTC-TTTTTGGTCACCCAACTATAAAAAGTTACAAAAT
8485737 AATCAGCCAA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
56 17 0.33
58 5 0.10
60 17 0.33
61 12 0.24
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (58 bp):
GTCACTCAACTATTAGTAATTTCTTTTTGGTCACCCAACTATAAAAAGTTACAAAATG
Found at i:8485748 original size:60 final size:56
Alignment explanation
Indices: 8485623--8485751 Score: 145
Period size: 60 Copynumber: 2.2 Consensus size: 56
8485613 ACACTAGTAG
**
8485623 TCACTCAACTATTAGTATTTCTTTTGTCACCCAACTATAAAAAAGTTACAAAATGG
1 TCACTCAACTATTAGTATTTCTTTTGTCACCCAACTATAAAAAAGTTACAAAATAA
* * *
8485679 TCACTCAACTATTAGTAAATTTCTTTTTTGGTCACCCAAGTAT-GAAAAGTTATAAAATAA
1 TCACTCAACTATTAGT--ATTTC--TTTT-GTCACCCAACTATAAAAAAGTTACAAAATAA
8485739 TCAGC-CAACTATT
1 TCA-CTCAACTATT
8485752 TAATTTTGTC
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
56 16 0.26
58 5 0.08
60 28 0.45
61 13 0.21
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (56 bp):
TCACTCAACTATTAGTATTTCTTTTGTCACCCAACTATAAAAAAGTTACAAAATAA
Found at i:8491115 original size:21 final size:21
Alignment explanation
Indices: 8491058--8491109 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8491048 TTAAAAGTTG
*
8491058 AACCTTAAAC-CCAAACCCTA
1 AACCTTAAACTCAAAACCCTA
* *
8491078 AATCTTAAACTCAAAACCTTA
1 AACCTTAAACTCAAAACCCTA
8491099 AACCTTAAACT
1 AACCTTAAACT
8491110 TTAAACTTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (21 bp):
AACCTTAAACTCAAAACCCTA
Found at i:8491522 original size:19 final size:20
Alignment explanation
Indices: 8491481--8491523 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
8491471 GTAATTTTTT
* **
8491481 AACCCGAAACTTGAACCTTA
1 AACCCGAAACTCGAACCCCA
8491501 AACCC-AAACTCGAACCCCA
1 AACCCGAAACTCGAACCCCA
8491520 AACC
1 AACC
8491524 TTGAACCTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.42, C:0.40, G:0.07, T:0.12
Consensus pattern (20 bp):
AACCCGAAACTCGAACCCCA
Found at i:8491570 original size:21 final size:21
Alignment explanation
Indices: 8491531--8491570 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8491521 ACCTTGAACC
* **
8491531 TTAAACTCGAAACGTTAAATT
1 TTAAACTCAAAACCCTAAATT
8491552 TTAAACTCAAAACCCTAAA
1 TTAAACTCAAAACCCTAAA
8491571 CCTTGAACCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.20, G:0.05, T:0.28
Consensus pattern (21 bp):
TTAAACTCAAAACCCTAAATT
Found at i:8492128 original size:141 final size:142
Alignment explanation
Indices: 8491867--8492147 Score: 422
Period size: 141 Copynumber: 2.0 Consensus size: 142
8491857 CCCTTTTTCC
* * * **
8491867 AATAGTTTAATGCCATATCAACATTTTCGTCCTGAATTTCAGGATTTTCGTCCTGAATAAAATTA
1 AATAGTTTAATGCCATATCAACATTTTCATCCTAAATTTCAGGATTTTCGTCCTGAAAAAAAGCA
* ** *
8491932 AATCTAAATAAAAATCTTGAAATTTAGGATGAAATTGTTAAGGTGGCATTAAACTATTGGAAAGG
66 AATCTAAATAAAAATCCTGAAATTTAGGATGAAATTACTAAGGTGGCATTAAACTATTGGAAAGA
8491997 GATAATATCCAT
131 GATAATATCCAT
* *
8492009 AATAGTTTAATGCCATATCAACATTTTCATTCTAAATTTCAGGATTTTTGTCCT-AAAAAAAGCA
1 AATAGTTTAATGCCATATCAACATTTTCATCCTAAATTTCAGGATTTTCGTCCTGAAAAAAAGCA
* *
8492073 AATCTAAATAAAACTCCTGAAATTTAGGATGAAATTACT-GGTGTGGCATTAAACTATTGGAAAG
66 AATCTAAATAAAAATCCTGAAATTTAGGATGAAATTACTAAG-GTGGCATTAAACTATTGGAAAG
8492137 AGATAATATCC
130 AGATAATATCC
8492148 CTATTTCATA
Statistics
Matches: 125, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
140 1 0.01
141 74 0.59
142 50 0.40
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.34
Consensus pattern (142 bp):
AATAGTTTAATGCCATATCAACATTTTCATCCTAAATTTCAGGATTTTCGTCCTGAAAAAAAGCA
AATCTAAATAAAAATCCTGAAATTTAGGATGAAATTACTAAGGTGGCATTAAACTATTGGAAAGA
GATAATATCCAT
Found at i:8497421 original size:41 final size:42
Alignment explanation
Indices: 8497376--8497491 Score: 139
Period size: 41 Copynumber: 2.8 Consensus size: 42
8497366 ATCTGAGATT
* *
8497376 TTCAGGCCTAATGCCTAGCAGGCTTGATGCCGGTG-AAT-TAA
1 TTCAGGCTTAATGCCTAGCAGGCTTTATGCCGGTGAAATGT-A
* * *
8497417 TTCAGACTTGATGTCTAGCAGGCTTTATGCCGGTGAAATGTA
1 TTCAGGCTTAATGCCTAGCAGGCTTTATGCCGGTGAAATGTA
**
8497459 -TCAGGCTTTGTGCCTAGCAGGCTTTATGCCGGT
1 TTCAGGCTTAATGCCTAGCAGGCTTTATGCCGGT
8497492 ATTTTATGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 59 0.92
42 4 0.06
43 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (42 bp):
TTCAGGCTTAATGCCTAGCAGGCTTTATGCCGGTGAAATGTA
Found at i:8501674 original size:9 final size:9
Alignment explanation
Indices: 8501660--8501690 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8501650 GTTAAAGGAA
8501660 TCGAGTTAT
1 TCGAGTTAT
*
8501669 TCGAGTTAA
1 TCGAGTTAT
8501678 TCGAGTTAT
1 TCGAGTTAT
8501687 TCGA
1 TCGA
8501691 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:8501764 original size:9 final size:9
Alignment explanation
Indices: 8501750--8501789 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
8501740 TTCGAATTCA
8501750 AATAACTCG
1 AATAACTCG
8501759 AATAACTCG
1 AATAACTCG
*
8501768 AATAATTCG
1 AATAACTCG
*
8501777 AATAATTCG
1 AATAACTCG
8501786 AATA
1 AATA
8501790 TCAAACTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.47, C:0.15, G:0.10, T:0.28
Consensus pattern (9 bp):
AATAACTCG
Found at i:8501777 original size:18 final size:18
Alignment explanation
Indices: 8501744--8501789 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
8501734 TGAGTTTTCG
*
8501744 AATTCAAATAACTCGAAT
1 AATTCGAATAACTCGAAT
* *
8501762 AACTCGAATAATTCGAAT
1 AATTCGAATAACTCGAAT
8501780 AATTCGAATA
1 AATTCGAATA
8501790 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.48, C:0.15, G:0.09, T:0.28
Consensus pattern (18 bp):
AATTCGAATAACTCGAAT
Found at i:8502034 original size:30 final size:31
Alignment explanation
Indices: 8502000--8502059 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
8501990 AAACCTTTTA
*
8502000 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
** *
8502030 TTTTCCCTTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
8502060 TCACACCTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:8505843 original size:41 final size:40
Alignment explanation
Indices: 8505749--8505963 Score: 202
Period size: 41 Copynumber: 5.3 Consensus size: 40
8505739 GTTGGATCGA
* *
8505749 AAACGCCGCAAAAGGTAAAACATTAGCAGCGTTTT-TGCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCAGCGTTTTCT-CAT
* *
8505789 AAACGCCGCAAAAGGTATAGCAATAGTAGCGTTCTTCTCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCAGCGTT-TTCTCAT
* * * *
8505830 AAACACAGCAAAAGATAAAGAAATAGCAGCGTTTTTCTCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCAGCG-TTTTCTCAT
* *
8505871 AAACGCCGCAAAAGGTAAA-CTAATAACGGCGATTTT-TCAT
1 AAACGCCGCAAAAGGTAAAGC-AATAGCAGCG-TTTTCTCAT
* * * * * *
8505911 AAACACCACTAAATGTAAAGCAATAGCAGTGTTTTTTCCAT
1 AAACGCCGCAAAAGGTAAAGCAATAGCAGCGTTTTCT-CAT
*
8505952 AAATGCCGCAAA
1 AAACGCCGCAAA
8505964 TATTTTTTTG
Statistics
Matches: 140, Mismatches: 28, Indels: 13
0.77 0.15 0.07
Matches are distributed among these distances:
39 4 0.03
40 56 0.40
41 77 0.55
42 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (40 bp):
AAACGCCGCAAAAGGTAAAGCAATAGCAGCGTTTTCTCAT
Found at i:8505911 original size:81 final size:81
Alignment explanation
Indices: 8505772--8505963 Score: 214
Period size: 81 Copynumber: 2.4 Consensus size: 81
8505762 GGTAAAACAT
* * **
8505772 TAGCAGCGTTTTTGCATAAACGCCGCAAAAGGTATAGCAATAGTAGCGTTCTTCTCATAAACA-C
1 TAGCAGCGTTTTTTCATAAACGCCGCAAAAGGTATAACAATAACAGCGTTCTTCTCATAAACACC
8505836 AGC-AAAAGATAAAGAAA
66 A-CTAAAAG-TAAAGAAA
*
8505853 TAGCAGCGTTTTTCTCATAAACGCCGCAAAAGGTA-AACTAATAACGGCGATT-TT-TCATAAAC
1 TAGCAGCGTTTTT-TCATAAACGCCGCAAAAGGTATAAC-AATAACAGCG-TTCTTCTCATAAAC
* *
8505915 ACCACTAAATGTAAAGCAA
63 ACCACTAAAAGTAAAGAAA
* *
8505934 TAGCAGTGTTTTTTCCATAAATGCCGCAAA
1 TAGCAGCGTTTTTT-CATAAACGCCGCAAA
8505964 TATTTTTTTG
Statistics
Matches: 96, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
80 1 0.01
81 58 0.60
82 35 0.36
83 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.25
Consensus pattern (81 bp):
TAGCAGCGTTTTTTCATAAACGCCGCAAAAGGTATAACAATAACAGCGTTCTTCTCATAAACACC
ACTAAAAGTAAAGAAA
Found at i:8506958 original size:127 final size:127
Alignment explanation
Indices: 8506732--8506991 Score: 484
Period size: 127 Copynumber: 2.0 Consensus size: 127
8506722 CAAAGAATAA
8506732 TTTATTCTCTTGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
1 TTTATTCTCTTGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
* *
8506797 CTGAACTACAATATTAAAGATTGTTTTTGGTAAAACGGATCCGTTTTACTTCTAATTTGTGG
66 CCGAACTACAATATTAAAGATTGTATTTGGTAAAACGGATCCGTTTTACTTCTAATTTGTGG
8506859 TTTATTCTCTTGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
1 TTTATTCTCTTGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
* *
8506924 CCGAACTACAATCTTAAAGATTGTATTTGGTAAAACGGGTCCGTTTTACTTCTAATTTGTGG
66 CCGAACTACAATATTAAAGATTGTATTTGGTAAAACGGATCCGTTTTACTTCTAATTTGTGG
8506986 TTTATT
1 TTTATT
8506992 GTTAATCCTA
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
127 129 1.00
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (127 bp):
TTTATTCTCTTGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
CCGAACTACAATATTAAAGATTGTATTTGGTAAAACGGATCCGTTTTACTTCTAATTTGTGG
Found at i:8507039 original size:40 final size:40
Alignment explanation
Indices: 8506979--8507056 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
8506969 TTACTTCTAA
* *
8506979 TTTGTGGTTTATTGTTAATCCTATTTTGTGGTAGTCCTAT
1 TTTGTGGTTTATTCTCAATCCTATTTTGTGGTAGTCCTAT
8507019 TTTGTGGTTTATTCTCAATCCTATTTTGTGGTAGTCCT
1 TTTGTGGTTTATTCTCAATCCTATTTTGTGGTAGTCCT
8507057 GTTATTCATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.14, C:0.13, G:0.19, T:0.54
Consensus pattern (40 bp):
TTTGTGGTTTATTCTCAATCCTATTTTGTGGTAGTCCTAT
Found at i:8510393 original size:28 final size:28
Alignment explanation
Indices: 8510362--8510420 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
8510352 CACTGGAACT
8510362 ACAAATTATGAGGAACATCAAATGTGAA
1 ACAAATTATGAGGAACATCAAATGTGAA
8510390 ACAAATTATGAGGAACATCAAATGTGAA
1 ACAAATTATGAGGAACATCAAATGTGAA
8510418 ACA
1 ACA
8510421 TGAAAGAACG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (28 bp):
ACAAATTATGAGGAACATCAAATGTGAA
Found at i:8510582 original size:44 final size:45
Alignment explanation
Indices: 8510517--8510602 Score: 131
Period size: 44 Copynumber: 1.9 Consensus size: 45
8510507 TGAACATGTT
*
8510517 TAGCGGTGTTTGTGGAGAAAGCGCCGCTAAAAGT-ATGTTCTTAG
1 TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAAGTCATGTTCTTAG
*
8510561 TAGCGGCGTTTGTAGGA-AAAGCGCCGCTAAAGGTCATGTTCT
1 TAGCGGCGTTTGT-GGAGAAAGCGCCGCTAAAAGTCATGTTCT
8510603 ATAACGATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
44 28 0.74
45 10 0.26
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.28
Consensus pattern (45 bp):
TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAAGTCATGTTCTTAG
Found at i:8514205 original size:28 final size:29
Alignment explanation
Indices: 8514141--8514216 Score: 93
Period size: 28 Copynumber: 2.7 Consensus size: 29
8514131 AGACTGTCTC
* *
8514141 CCACTTTGGCTTGCACTTTGTACTATCCG
1 CCACTTTAGCTTGCACTTTGGACTATCCG
* *
8514170 CCACTTTAGCTTGCAC-TTGGATTGTCCG
1 CCACTTTAGCTTGCACTTTGGACTATCCG
8514198 CCACTTTAGCTCT-CACTTT
1 CCACTTTAGCT-TGCACTTT
8514217 TGGCTTGTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 23 0.56
29 18 0.44
ACGTcount: A:0.14, C:0.32, G:0.16, T:0.38
Consensus pattern (29 bp):
CCACTTTAGCTTGCACTTTGGACTATCCG
Found at i:8525907 original size:33 final size:34
Alignment explanation
Indices: 8525862--8525925 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
8525852 TTCAGTCAAA
8525862 ATTTTATAATATTATAAATAA-TATACATTTTATT
1 ATTTTATAATATTATAAATAATTATA-ATTTTATT
*
8525896 ATTTTA-AATATTTTAAATAATTATAATTTT
1 ATTTTATAATATTATAAATAATTATAATTTT
8525926 TTACACGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (34 bp):
ATTTTATAATATTATAAATAATTATAATTTTATT
Found at i:8529443 original size:18 final size:19
Alignment explanation
Indices: 8529403--8529444 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
8529393 TAAAAATGAT
*
8529403 AAAAAAATCATAAAAAGTC
1 AAAAAAATCATAAAAAGTA
* *
8529422 AAAAAAAT-ATAAATATTA
1 AAAAAAATCATAAAAAGTA
8529440 AAAAA
1 AAAAA
8529445 TATTAAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (19 bp):
AAAAAAATCATAAAAAGTA
Found at i:8529549 original size:30 final size:31
Alignment explanation
Indices: 8529474--8529549 Score: 72
Period size: 30 Copynumber: 2.5 Consensus size: 31
8529464 TTATTAGAAT
8529474 TATAAAAAAT-ATAAAGACTTATAAATAAATA
1 TATAAAAAATCAT-AAGACTTATAAATAAATA
*
8529505 T-T-AAAATTGACATAAG-CTTATAAA-AAATTA
1 TATAAAAAAT--CATAAGACTTATAAATAAA-TA
8529535 TATAAAAAATCATAA
1 TATAAAAAATCATAA
8529550 AAACTTGAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
29 8 0.22
30 17 0.46
31 5 0.14
32 7 0.19
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (31 bp):
TATAAAAAATCATAAGACTTATAAATAAATA
Found at i:8531801 original size:52 final size:52
Alignment explanation
Indices: 8531623--8531803 Score: 285
Period size: 52 Copynumber: 3.5 Consensus size: 52
8531613 CGGATACCCG
* * *
8531623 GTGGCCTACACATAGTACCACTCTTGT-AGCCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCTTTCTTCACAAA
* *
8531674 GTGGCCTTCACATAGTACCACATTTGTGACCAAAGCTATCTTTTTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
8531726 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
*
8531778 GTGGCCTTCACATAGTACTACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
8531804 AGTCACTAGT
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
51 33 0.28
52 87 0.73
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.29
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
Found at i:8533743 original size:23 final size:23
Alignment explanation
Indices: 8533713--8533760 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
8533703 CAATTAAGGT
8533713 AAGTATATAAAGCATACTCAAGC
1 AAGTATATAAAGCATACTCAAGC
8533736 AAGTATATAAAGCATACTCAAGC
1 AAGTATATAAAGCATACTCAAGC
8533759 AA
1 AA
8533761 ATGGCCAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (23 bp):
AAGTATATAAAGCATACTCAAGC
Found at i:8534087 original size:27 final size:26
Alignment explanation
Indices: 8534056--8534179 Score: 73
Period size: 25 Copynumber: 5.0 Consensus size: 26
8534046 TTCATATTCG
8534056 GGAAGCCCTC-TCTCGAGCCATATAACA
1 GGAAG-CCTCATCT-GAGCCATATAACA
* *
8534083 GGAAG-CTCATGTGAGCCATATAACG
1 GGAAGCCTCATCTGAGCCATATAACA
* * * * *
8534108 GGAAG-CTTATCCGGGCTATATAACG
1 GGAAGCCTCATCTGAGCCATATAACA
** * *
8534133 GGAAG-CTCATAAGAGTCATAT-GCA
1 GGAAGCCTCATCTGAGCCATATAACA
*
8534157 GGAAG-CTCATATGAGCCA-ATAAC
1 GGAAGCCTCATCTGAGCCATATAAC
8534180 GGGTAACTTC
Statistics
Matches: 77, Mismatches: 18, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
23 2 0.03
24 18 0.23
25 50 0.65
26 2 0.03
27 5 0.06
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (26 bp):
GGAAGCCTCATCTGAGCCATATAACA
Found at i:8534100 original size:25 final size:25
Alignment explanation
Indices: 8534070--8534179 Score: 107
Period size: 25 Copynumber: 4.5 Consensus size: 25
8534060 GCCCTCTCTC
*
8534070 GAGCCATATAACAGGAAGCTCATGT
1 GAGCCATATAACAGGAAGCTCATAT
* * **
8534095 GAGCCATATAACGGGAAGCTTATCC
1 GAGCCATATAACAGGAAGCTCATAT
* * * *
8534120 GGGCTATATAACGGGAAGCTCATAA
1 GAGCCATATAACAGGAAGCTCATAT
* *
8534145 GAGTCATAT-GCAGGAAGCTCATAT
1 GAGCCATATAACAGGAAGCTCATAT
8534169 GAGCCA-ATAAC
1 GAGCCATATAAC
8534180 GGGTAACTTC
Statistics
Matches: 67, Mismatches: 17, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
23 2 0.03
24 18 0.27
25 47 0.70
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTCATAT
Found at i:8534240 original size:49 final size:48
Alignment explanation
Indices: 8534125--8534240 Score: 121
Period size: 49 Copynumber: 2.4 Consensus size: 48
8534115 TATCCGGGCT
* *
8534125 ATATAACGGGAAGCTCATAAGAGTCATATGCAGGAAGCTCATATGAGCC
1 ATATAACGGGAAGTTCA-AAGAGTCATATGCAGGAAGCTCAGATGAGCC
* *
8534174 A-ATAACGGGTAACTTCAAAGAGTCATTAAT-CATGAAGCTCCAGAT-AGCC
1 ATATAACGGG-AAGTTCAAAGAGTCA-T-ATGCAGGAAGCT-CAGATGAGCC
*
8534223 ATATATCGGGAAGTTCAA
1 ATATAACGGGAAGTTCAA
8534241 GCGAGCCATA
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
48 16 0.29
49 27 0.48
50 13 0.23
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (48 bp):
ATATAACGGGAAGTTCAAAGAGTCATATGCAGGAAGCTCAGATGAGCC
Found at i:8534810 original size:21 final size:22
Alignment explanation
Indices: 8534781--8534823 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
8534771 AAGAGTAAAT
*
8534781 TTAACTCAATTTAATACAATTC
1 TTAACTCAATTCAATACAATTC
*
8534803 TTAA-TCAATTCAATCCAATTC
1 TTAACTCAATTCAATACAATTC
8534824 ACATATTAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.40, C:0.21, G:0.00, T:0.40
Consensus pattern (22 bp):
TTAACTCAATTCAATACAATTC
Found at i:8535797 original size:18 final size:18
Alignment explanation
Indices: 8535774--8535826 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
8535764 AATTTAATAC
8535774 TTTTAATACTTTTTATAT
1 TTTTAATACTTTTTATAT
*
8535792 TTTTAAT-CATTTTATTAT
1 TTTTAATACTTTTTA-TAT
*
8535810 TTTTAATAATTTTTATA
1 TTTTAATACTTTTTATA
8535827 GAATTTTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 6 0.20
18 19 0.63
19 5 0.17
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTAATACTTTTTATAT
Found at i:8535803 original size:10 final size:9
Alignment explanation
Indices: 8535766--8535839 Score: 62
Period size: 9 Copynumber: 8.0 Consensus size: 9
8535756 AGTATATTAA
*
8535766 TTTAATACT
1 TTTAATATT
8535775 TTTAATACTT
1 TTTAATA-TT
8535785 TTT-ATATT
1 TTTAATATT
8535793 TTTAATCA-T
1 TTTAAT-ATT
*
8535802 TTTATTATT
1 TTTAATATT
8535811 TTTAATAATT
1 TTTAAT-ATT
* *
8535821 TTTATAGAAT
1 TTTA-ATATT
8535831 TTTAATATT
1 TTTAATATT
8535840 AATTTTTTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
8 6 0.12
9 27 0.52
10 18 0.35
11 1 0.02
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTAATATT
Found at i:8539128 original size:25 final size:25
Alignment explanation
Indices: 8539091--8539138 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
8539081 ATAGATCTCG
*
8539091 TTTCTCATCTCGTATCGTTTACGAT
1 TTTCTCATATCGTATCGTTTACGAT
* *
8539116 TTTCTCGTATCGTCTCGTTTACG
1 TTTCTCATATCGTATCGTTTACG
8539139 GTATTTCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.12, C:0.25, G:0.15, T:0.48
Consensus pattern (25 bp):
TTTCTCATATCGTATCGTTTACGAT
Found at i:8550953 original size:6 final size:6
Alignment explanation
Indices: 8550944--8550982 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
8550934 AAGAATAAGA
8550944 ACAAGC ACAAGC ACAAGC ACAAGC ACAAGC ACAAGC ACA
1 ACAAGC ACAAGC ACAAGC ACAAGC ACAAGC ACAAGC ACA
8550983 TGTTTATGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.51, C:0.33, G:0.15, T:0.00
Consensus pattern (6 bp):
ACAAGC
Found at i:8554064 original size:44 final size:44
Alignment explanation
Indices: 8554016--8554335 Score: 155
Period size: 44 Copynumber: 7.3 Consensus size: 44
8554006 AATAGCAAAT
* * *
8554016 CTTGCCTTCCTGCACCGACAGCGAAGCAAATTGAAGACACCAGC
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATTGAAGACACCAGC
** * * * * * *
8554060 CTTGCCTCCCTAG-GTTG-CAGCGGAGCAGGTTGAATATAGCAGAT
1 CTTGCCTCCCT-GCACTGACAGCGAAGCAGATTGAAGACACCAG-C
* *
8554104 CTTACCTTCCTGCACTGACAGCGAAGCAGATTGAAGACACCAGC
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATTGAAGACACCAGC
** * * * * * * *
8554148 CTTGCCTCCCTG-GGTTACAGCGGAGCAGGTTAAAGATAGCAGAT
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATTGAAGACACCAG-C
* * * * * *
8554192 CTTGCCTTCCTGTATTGACAGTGAAGTAGATTGAAGACACTAGC
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATTGAAGACACCAGC
* *** ** * * *** *
8554236 TTTGCCTCCCTGGGTTG-CAGCGGGGCAGGTTGAAGATAGTGGAT
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATTGAAGACACCAG-C
* * ** *
8554280 CTTGCCTTCTTGCA-TCGACAGCGAAGCAGATCAAAGACACCAAC
1 CTTGCCTCCCTGCACT-GACAGCGAAGCAGATTGAAGACACCAGC
8554324 CTTGCCTCCCTG
1 CTTGCCTCCCTG
8554336 GGTTACAACG
Statistics
Matches: 191, Mismatches: 76, Indels: 18
0.67 0.27 0.06
Matches are distributed among these distances:
43 60 0.31
44 76 0.40
45 55 0.29
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (44 bp):
CTTGCCTCCCTGCACTGACAGCGAAGCAGATTGAAGACACCAGC
Found at i:8554114 original size:88 final size:88
Alignment explanation
Indices: 8553965--8554458 Score: 614
Period size: 88 Copynumber: 5.6 Consensus size: 88
8553955 TAAGTGTATT
* * * * *
8553965 CACCATCCTTGCCTCCCCGGGTTGCAGCGGAGGAGGTTGAAA-ATAGCAAATCTTGCCTTCCTGC
1 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTT-AAAGATAGCAGATCTTGCCTTCCTGC
** *
8554029 ACCGACAGCGAAGCAAATTGAAGA
65 ATTGACAGCGAAGCAGATTGAAGA
* * * * *
8554053 CACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTGAATATAGCAGATCTTACCTTCCTGCA
1 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGCA
*
8554118 CTGACAGCGAAGCAGATTGAAGA
66 TTGACAGCGAAGCAGATTGAAGA
*
8554141 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTA
1 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGCA
* *
8554206 TTGACAGTGAAGTAGATTGAAGA
66 TTGACAGCGAAGCAGATTGAAGA
* * * * * ** *
8554229 CACTAGCTTTGCCTCCCTGGGTTGCAGCGGGGCAGGTTGAAGATAGTGGATCTTGCCTTCTTGCA
1 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGCA
* **
8554294 TCGACAGCGAAGCAGATCAAAGA
66 TTGACAGCGAAGCAGATTGAAGA
* * * *
8554317 CACCAACCTTGCCTCCCTGGGTTACAACGGAGCAGGTTAAAGATATCAGATCTTGCCTTCCTGTA
1 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGCA
* * *
8554382 TTGACAGTGAAACAGATCGAAGA
66 TTGACAGCGAAGCAGATTGAAGA
* * *
8554405 CCCCAGCCTTGCTTCCCTGGGTTACAGCGGAGCAGGTTAAAAATTA-CAGATCTT
1 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGA-TAGCAGATCTT
8554459 ATTTCCCTAA
Statistics
Matches: 351, Mismatches: 53, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
87 2 0.01
88 347 0.99
89 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (88 bp):
CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGCA
TTGACAGCGAAGCAGATTGAAGA
Found at i:8554372 original size:44 final size:44
Alignment explanation
Indices: 8554060--8554458 Score: 164
Period size: 44 Copynumber: 9.1 Consensus size: 44
8554050 AGACACCAGC
* * * * *
8554060 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTGAATATAGCAGAT
1 CTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATATCAGAT
* * ** * * * * * * *
8554104 CTTACCTTCCTGCACTGACAGCGAAGCAGATTGAAGACACCAG-C
1 CTTGCCTCCCTG-GGTTACAGCGGAGCAGGTTAAAGATATCAGAT
*
8554148 CTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATAGCAGAT
1 CTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATATCAGAT
* ** * * * * * * *
8554192 CTTGCCTTCCTGTATTGACAGTGAAGTAGATTGAAGACA-CTAGCT
1 CTTGCCTCCCTGGGTT-ACAGCGGAGCAGGTTAAAGATATC-AGAT
* * * *
8554237 -TTGCCTCCCTGGGTTGCAGCGGGGCAGGTTGAAGATAGT-GGAT
1 CTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATA-TCAGAT
* * ** * * * * * * *
8554280 CTTGCCTTCTTGCATCGACAGCGAAGCAGATCAAAGACACCA-AC
1 CTTGCCTCCCTGGGT-TACAGCGGAGCAGGTTAAAGATATCAGAT
*
8554324 CTTGCCTCCCTGGGTTACAACGGAGCAGGTTAAAGATATCAGAT
1 CTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATATCAGAT
* ** * * * * ** *** *
8554368 CTTGCCTTCCTGTATTGACAGTGAAACAGATCGAAGACCCCAG-C
1 CTTGCCTCCCTGGGTT-ACAGCGGAGCAGGTTAAAGATATCAGAT
* *
8554412 CTTGCTTCCCTGGGTTACAGCGGAGCAGGTTAAAAAT-TACAGAT
1 CTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATAT-CAGAT
8554456 CTT
1 CTT
8554459 ATTTCCCTAA
Statistics
Matches: 241, Mismatches: 101, Indels: 26
0.65 0.27 0.07
Matches are distributed among these distances:
43 74 0.31
44 96 0.40
45 71 0.29
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (44 bp):
CTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATATCAGAT
Found at i:8554443 original size:264 final size:264
Alignment explanation
Indices: 8553973--8554458 Score: 706
Period size: 264 Copynumber: 1.8 Consensus size: 264
8553963 TTCACCATCC
8553973 TTGCCTCCCCGGGTTGCAGCGGAGGAGGTTGAAAATAGCAAATCTTGCCTTCCTGCACCGACAGC
1 TTGCCTCCCCGGGTTGCAGCGGAGGAGGTTGAAAATAGCAAATCTTGCCTTCCTGCACCGACAGC
** * * * * *
8554038 GAAGCAAATTGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTGAATATAGCAGA
66 GAAGCAAATCAAAGACACCAACCTTGCCTCCCTAGGTTACAACGGAGCAGGTTAAAGATAGCAGA
* *
8554103 TCTTACCTTCCTGCACTGACAGCGAAGCAGATTGAAGACACCAGCCTTGCCTCCCTGGGTTACAG
131 TCTTACCTTCCTGCACTGACAGCGAAACAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAG
*
8554168 CGGAGCAGGTTAAAGA-TAGCAGATCTTGCCTTCCTGTATTGACAGTGAAGTAGATTGAAGACAC
196 CGGAGCAGGTTAAAAATTA-CAGATCTTGCCTTCCTGTATTGACAGTGAAGTAGATTGAAGACAC
8554232 TAGCT
260 TAGCT
* * *** * *
8554237 TTGCCTCCCTGGGTTGCAGCGG-GGCAGGTTGAAGATAGTGGATCTTGCCTTCTTGCATCGACAG
1 TTGCCTCCCCGGGTTGCAGCGGAGG-AGGTTGAAAATAGCAAATCTTGCCTTCCTGCACCGACAG
* * *
8554301 CGAAGCAGATCAAAGACACCAACCTTGCCTCCCTGGGTTACAACGGAGCAGGTTAAAGATATCAG
65 CGAAGCAAATCAAAGACACCAACCTTGCCTCCCTAGGTTACAACGGAGCAGGTTAAAGATAGCAG
* * * * * *
8554366 ATCTTGCCTTCCTGTATTGACAGTGAAACAGATCGAAGACCCCAGCCTTGCTTCCCTGGGTTACA
130 ATCTTACCTTCCTGCACTGACAGCGAAACAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACA
8554431 GCGGAGCAGGTTAAAAATTACAGATCTT
195 GCGGAGCAGGTTAAAAATTACAGATCTT
8554459 ATTTCCCTAA
Statistics
Matches: 194, Mismatches: 26, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
263 2 0.01
264 190 0.98
265 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (264 bp):
TTGCCTCCCCGGGTTGCAGCGGAGGAGGTTGAAAATAGCAAATCTTGCCTTCCTGCACCGACAGC
GAAGCAAATCAAAGACACCAACCTTGCCTCCCTAGGTTACAACGGAGCAGGTTAAAGATAGCAGA
TCTTACCTTCCTGCACTGACAGCGAAACAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAG
CGGAGCAGGTTAAAAATTACAGATCTTGCCTTCCTGTATTGACAGTGAAGTAGATTGAAGACACT
AGCT
Found at i:8554818 original size:44 final size:44
Alignment explanation
Indices: 8554499--8554797 Score: 431
Period size: 44 Copynumber: 6.8 Consensus size: 44
8554489 TGACCCCAGC
* *
8554499 CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGGTTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
8554543 CCTATCTCCCTGGTCAGCAGAGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * * *
8554587 TCTATCTCCTTGGGCAGCAGTGGAATAGATTGAGGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * *
8554631 TCTATCTCCCTGGGT-AGTAGTGGAATAGATTGAAGATTGTGAAT
1 CCTATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
*
8554675 CCTATCTCTCTGGTCA-CAGTAGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGT-GGAATAGGTTGAAGATTGTGAAT
*
8554719 CATATCTCCCTGGTCAGCAGTAGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGT-GGAATAGGTTGAAGATTGTGAAT
8554764 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAA
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAA
8554798 TATTACAGAT
Statistics
Matches: 229, Mismatches: 22, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
43 6 0.03
44 173 0.76
45 50 0.22
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:8554989 original size:44 final size:44
Alignment explanation
Indices: 8554941--8555402 Score: 165
Period size: 44 Copynumber: 10.6 Consensus size: 44
8554931 ATTGCAAATT
*
8554941 TTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACGAATC
* ** * *
8554985 TTATCTTCCCCAAG-AGTAG-GGAAGCAGATTTAAG-CCACTG-ACC
1 TTATC-TCCCTAAGCAGTAGTGG-AGCAGATCAAAGACGAC-GAATC
* * * * * * **
8555028 TTGTCTCCCTGAA-CAGCAGTGGAGTAGGTTAAAAATTAC-AGATC
1 TTATCTCCCT-AAGCAGTAGTGGAGCAGATCAAAGACGACGA-ATC
* **
8555072 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACGAATC
* * * ** * * *
8555116 TTATATTCCC--AGGAGTAG-GGAAACAGATTTAAG-CCACTAACC
1 TTAT-CTCCCTAAGCAGTAGTGG-AGCAGATCAAAGACGACGAATC
* * * * **
8555158 TTATCTCCCT--G-AGCAGTGGAGTAGGTTGAAA-ATTAC-AGATC
1 TTATCTCCCTAAGCAGTAGTGGAGCA-GATCAAAGACGACGA-ATC
* * *
8555199 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGCGAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACGAATC
* * *
8555243 TTATCTTCCCCAAG-AGTAG-GGAAGCAGATTC-AAG-CCACTG-ACC
1 TTATC-TCCCTAAGCAGTAGTGG-AGCAGA-TCAAAGACGAC-GAATC
** * * * * * * ** **
8555286 TTATCTCCCTGAAGTTGCAGCGGAACAAACCGAAGAATTATAAATC
1 TTATCTCCCT-AAGCAGTAGTGGAGCAGATCAAAG-ACGACGAATC
* * *
8555332 TTATCTCCCTAAGCAGTAGTGGAGCATATCAAAGATGGC-AGATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACGA-ATC
8555376 TTATCTCCCTAAGCAGTAGTGGAGCAG
1 TTATCTCCCTAAGCAGTAGTGGAGCAG
8555403 GTTGAAAATT
Statistics
Matches: 301, Mismatches: 82, Indels: 70
0.66 0.18 0.15
Matches are distributed among these distances:
40 7 0.02
41 25 0.08
42 18 0.06
43 63 0.21
44 135 0.45
45 40 0.13
46 13 0.04
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (44 bp):
TTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACGAATC
Found at i:8555063 original size:131 final size:131
Alignment explanation
Indices: 8554766--8555402 Score: 795
Period size: 131 Copynumber: 4.9 Consensus size: 131
8554756 TTGTGAATCC
** * *
8554766 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAATATTACAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGAACAGCAGTGGAATAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
* * * *
8554831 AGCAGATTGAAGACGGCGAATCTCATCTTCCCCAGGTAGTAGGGAAGCAGATTTAAGCCACTAGT
66 AGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAG-AGTAGGGAAGCAGATTTAAGCCACT-GA
8554896 CC-
129 CCT
* * * * *
8554898 TATCCCCCTGGACAGCAGTGGAATAGGTTAAAAATTGCAAATTTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGAACAGCAGTGGAATAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
*
8554963 AGCAGATCAAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAGCAGATTTAAGCCACTGACC
66 AGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAGCAGATTTAAGCCACTGACC
8555028 T
131 T
* *
8555029 TGTCTCCCTGAACAGCAGTGGAGTAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGAACAGCAGTGGAATAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
* * * * *
8555094 AGCAGATCGAAGACGGTGAATCTTATATT-CCCAGGAGTAGGGAAACAGATTTAAGCCACTAACC
66 AGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAGCAGATTTAAGCCACTGACC
8555158 T
131 T
* * *
8555159 TATCTCCCTG---AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGTAGTAGTGG
1 TATCTCCCTGAACAGCAGTGGAATAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
*
8555221 AGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAGCAGATTCAAGCCACTGACC
66 AGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAGCAGATTTAAGCCACTGACC
8555286 T
131 T
** * * **** * * *
8555287 TATCTCCCTGAAGTTGCAGCGGAACAAACCGAAGAATTATAAATCTTATCTCCCTAAGCAGTAGT
1 TATCTCCCTGAA-CAGCAGTGGAA-TAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGT
* * * *
8555352 GGAGCATATCAAAGATGGC-AGATCTTATC-TCCCTAAGCAGTAGTGG-AGCAG
64 GGAGCAGATCGAAGACGGCGA-ATCTTATCTTCCCCAAG-AGTAG-GGAAGCAG
8555403 GTTGAAAATT
Statistics
Matches: 444, Mismatches: 51, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
127 77 0.17
128 42 0.09
130 45 0.10
131 109 0.25
132 105 0.24
133 64 0.14
134 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (131 bp):
TATCTCCCTGAACAGCAGTGGAATAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAGCAGATTTAAGCCACTGACC
T
Found at i:8555256 original size:258 final size:262
Alignment explanation
Indices: 8554766--8555366 Score: 825
Period size: 258 Copynumber: 2.3 Consensus size: 262
8554756 TTGTGAATCC
** * *
8554766 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAATATTACAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGAACAGCAGTGGAATAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
* * * *
8554831 AGCAGATTGAAGACGGCGAATCTCATCTTCCCCAGGTAGTAGGGAAGCAGATTTAAGCCACTAGT
66 AGCAGATCGAAGACGGCGAATCTCATATTCCCCAGGTAGTAGGGAAACAGATTTAAGCCACTAGA
* *
8554896 CCTATCCCCCTGGACAGCAGTGGAATAGGTTAAAAATTGCAAATTTTATCTCCCTAAGCAGTAGT
131 CCTATCCCCCTGGA-AGCAGTGGAATAGGTTAAAAATTACAAATCTTATCTCCCTAAGCAGTAGT
*
8554961 GGAGCAGATCAAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAGCAGATTTAAGCCACTGA
195 GGAGCAGATCAAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAGCAGATTCAAGCCACTGA
8555026 CCT
260 CCT
* *
8555029 TGTCTCCCTGAACAGCAGTGGAGTAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGAACAGCAGTGGAATAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
* *
8555094 AGCAGATCGAAGACGGTGAATCTTATATT-CCCAGG-AGTAGGGAAACAGATTTAAGCCACTA-A
66 AGCAGATCGAAGACGGCGAATCTCATATTCCCCAGGTAGTAGGGAAACAGATTTAAGCCACTAGA
* * * * *
8555156 CCTTATCTCCCT-G-AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGTAGTAGT
131 CC-TATCCCCCTGGAAGCAGTGGAATAGGTTAAAAATTACAAATCTTATCTCCCTAAGCAGTAGT
*
8555219 GGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAGCAGATTCAAGCCACTGA
195 GGAGCAGATCAAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAGCAGATTCAAGCCACTGA
8555284 CCT
260 CCT
** * * **** * * *
8555287 TATCTCCCTGAAGTTGCAGCGGAACAAACCGAAGAATTATAAATCTTATCTCCCTAAGCAGTAGT
1 TATCTCCCTGAA-CAGCAGTGGAA-TAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGT
* *
8555352 GGAGCATATCAAAGA
64 GGAGCAGATCGAAGA
8555367 TGGCAGATCT
Statistics
Matches: 299, Mismatches: 36, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
258 121 0.40
259 7 0.02
260 48 0.16
261 33 0.11
262 6 0.02
263 84 0.28
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (262 bp):
TATCTCCCTGAACAGCAGTGGAATAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCGAAGACGGCGAATCTCATATTCCCCAGGTAGTAGGGAAACAGATTTAAGCCACTAGA
CCTATCCCCCTGGAAGCAGTGGAATAGGTTAAAAATTACAAATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATCAAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAGCAGATTCAAGCCACTGAC
CT
Found at i:8555421 original size:44 final size:43
Alignment explanation
Indices: 8555321--8555422 Score: 111
Period size: 44 Copynumber: 2.3 Consensus size: 43
8555311 CAAACCGAAG
*
8555321 AATTATAAATCTTATCTCCCTAAGCAGTAGTGGAGCATATCAA
1 AATTATGAATCTTATCTCCCTAAGCAGTAGTGGAGCATATCAA
* *
8555364 AGA-T-GGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGT-TGAA
1 A-ATTATG-A-ATCTTATCTCCCTAAGCAGTAGTGGAGCA--TATCAA
8555409 AATTATGAATCTTA
1 AATTATGAATCTTA
8555423 CTTCCCAGGC
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
43 3 0.06
44 37 0.77
45 6 0.12
46 2 0.04
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (43 bp):
AATTATGAATCTTATCTCCCTAAGCAGTAGTGGAGCATATCAA
Found at i:8555478 original size:50 final size:50
Alignment explanation
Indices: 8555415--8555577 Score: 175
Period size: 50 Copynumber: 3.3 Consensus size: 50
8555405 TGAAAATTAT
* * * *
8555415 GAATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGC
1 GAATCTAACTTCCCAGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGGC
* * * * * ** * *
8555465 GAGTCCT-GCTTCCCCGACGTTGCAGTTAAAAATATTGAAGCTACAACAGC
1 GAAT-CTAACTTCCCAGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGGC
*
8555515 GAATCTAACTTCCCAGGTGGTGCAGTGGAAAAGATTGAAGCTACAACGGC
1 GAATCTAACTTCCCAGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGGC
*
8555565 GAATCTAGCTTCC
1 GAATCTAACTTCC
8555578 TCGACATTGC
Statistics
Matches: 88, Mismatches: 23, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
49 2 0.02
50 84 0.95
51 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (50 bp):
GAATCTAACTTCCCAGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGGC
Found at i:8555588 original size:100 final size:101
Alignment explanation
Indices: 8555415--8555611 Score: 274
Period size: 100 Copynumber: 2.0 Consensus size: 101
8555405 TGAAAATTAT
* * *
8555415 GAATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCGAGTCCTGCTTCCCC
1 GAATCTAACTTCCCAGGCGGTGCAGTGGAAAAGATTAAAGCCACAACGGCGAATCCTGCTTCCCC
*
8555480 GACGTTGCAGTTAAA-AATATTGAAGCT-ACAACAGC
66 GACATTGCAGTTAAATAA-ATTGAAGCTGACAACAGC
* * * *
8555515 GAATCTAACTTCCCAGGTGGTGCAGTGGAAAAGATTGAAGCTACAACGGCGAAT-CTAGCTTCCT
1 GAATCTAACTTCCCAGGCGGTGCAGTGGAAAAGATTAAAGCCACAACGGCGAATCCT-GCTTCCC
*
8555579 CGACATTGCAGTTAAATAAATTGGAGCTGACAA
65 CGACATTGCAGTTAAATAAATTGAAGCTGACAA
8555612 AAGAAATCAA
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
99 2 0.02
100 77 0.91
101 6 0.07
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.22
Consensus pattern (101 bp):
GAATCTAACTTCCCAGGCGGTGCAGTGGAAAAGATTAAAGCCACAACGGCGAATCCTGCTTCCCC
GACATTGCAGTTAAATAAATTGAAGCTGACAACAGC
Found at i:8556064 original size:7 final size:8
Alignment explanation
Indices: 8556035--8556063 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
8556025 TTACAAAGTC
8556035 AAAAAATA
1 AAAAAATA
8556043 AAAAAATA
1 AAAAAATA
8556051 AAAAAATA
1 AAAAAATA
8556059 AAAAA
1 AAAAA
8556064 TTTATAGCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:8560324 original size:24 final size:24
Alignment explanation
Indices: 8560290--8560350 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
8560280 CATCTTTGCA
* *
8560290 TTCATTTTTTTGAGCCAA-TATTCT
1 TTCATTCTTTTGA-ACAATTATTCT
*
8560314 TTCATTCTTTTCGAATAATTATTCT
1 TTCATTCTTTT-GAACAATTATTCT
8560339 TTCATTCTTTTG
1 TTCATTCTTTTG
8560351 GATTTTCTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 13 0.41
25 19 0.59
ACGTcount: A:0.20, C:0.16, G:0.07, T:0.57
Consensus pattern (24 bp):
TTCATTCTTTTGAACAATTATTCT
Found at i:8561489 original size:23 final size:22
Alignment explanation
Indices: 8561445--8561513 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
8561435 GTTCAAATTC
*
8561445 AATAAAAAAAATCAAAAT-AAA
1 AATAAAAAAAGTCAAAATAAAA
*
8561466 AA-AGAAAAAGTCAAAATTAAAA
1 AATAAAAAAAGTCAAAA-TAAAA
**
8561488 AATAATCAAAGTCAAAATAAAA
1 AATAAAAAAAGTCAAAATAAAA
8561510 AATA
1 AATA
8561514 TGAAAATGAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
20 12 0.30
21 3 0.08
22 14 0.35
23 11 0.28
ACGTcount: A:0.74, C:0.06, G:0.04, T:0.16
Consensus pattern (22 bp):
AATAAAAAAAGTCAAAATAAAA
Found at i:8562509 original size:19 final size:18
Alignment explanation
Indices: 8562485--8562520 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
8562475 TTTTGAGTCT
*
8562485 AAAAAATAAAAAATAAATC
1 AAAAAAGAAAAAA-AAATC
8562504 AAAAAAGAAAAAAAAAT
1 AAAAAAGAAAAAAAAAT
8562521 AGAGAGGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.83, C:0.03, G:0.03, T:0.11
Consensus pattern (18 bp):
AAAAAAGAAAAAAAAATC
Found at i:8563834 original size:45 final size:45
Alignment explanation
Indices: 8563695--8563835 Score: 117
Period size: 45 Copynumber: 3.2 Consensus size: 45
8563685 ACAGATCAGT
* *
8563695 GAAGATAACAGATCTTGCCTTCCTGTACTGACAGTGAAGTAGATC
1 GAAGATAACAGATCTTGCCTTCTTGTACTGACAGTGAAGCAGATC
* * * *** * * *
8563740 GAAGACACCA-ACCTTGCC-TCATTGGGTTGATAGTAAAGCAG-GC
1 GAAGATAACAGATCTTGCCTTC-TTGTACTGACAGTGAAGCAGATC
* * *
8563783 TAAAGATAGCAGATCTTGCCTTCTTGTACTGACGGTGAAGCAGATC
1 -GAAGATAACAGATCTTGCCTTCTTGTACTGACAGTGAAGCAGATC
8563829 GAAGATA
1 GAAGATA
8563836 CTAGTCCTAT
Statistics
Matches: 68, Mismatches: 23, Indels: 10
0.67 0.23 0.10
Matches are distributed among these distances:
43 3 0.04
44 27 0.40
45 35 0.51
46 3 0.04
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (45 bp):
GAAGATAACAGATCTTGCCTTCTTGTACTGACAGTGAAGCAGATC
Found at i:8563877 original size:43 final size:43
Alignment explanation
Indices: 8563829--8563920 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
8563819 GAAGCAGATC
* *
8563829 GAAGATACTAGTCCTATCTCCCTGAACAGCAGTGGGATAGGTT
1 GAAGATACTAATCCTATCTCCCTGAACAGCAGTGGAATAGGTT
* ** *
8563872 GAAGATAGTAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTT
1 GAAGATACTAATCCTATCTCCCTGAACAGCAGTGGAATAGGTT
8563915 GAAGAT
1 GAAGAT
8563921 TATAGATCAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (43 bp):
GAAGATACTAATCCTATCTCCCTGAACAGCAGTGGAATAGGTT
Found at i:8564084 original size:45 final size:44
Alignment explanation
Indices: 8564019--8564139 Score: 145
Period size: 44 Copynumber: 2.7 Consensus size: 44
8564009 TACTAGCCTG
* ** * *
8564019 ATCTCCCTGAGCAGCGGTGGAGTAGA-CAGAAGAATTACAGATCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAG-ATGACAGATCTT
8564064 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAGATCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAGATCTT
* * *
8564108 ATCTCCTTAAGCAGTAGTGGAACAGATTGAAG
1 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
8564140 CTAGTAATCC
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
44 40 0.60
45 26 0.39
46 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (44 bp):
ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAGATCTT
Found at i:8564398 original size:217 final size:215
Alignment explanation
Indices: 8564056--8564675 Score: 913
Period size: 217 Copynumber: 2.9 Consensus size: 215
8564046 AGAAGAATTA
* *
8564056 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAT-GACAGATCTTATCTCCTT-AAG
1 CAGATCTTATCT-CCTAAGCAGTAGTGGAGCAGATCGAAGATGGA-AAATCTTATCTCCTTGAGG
** * * * * *
8564119 CAGTAGTGGAACAGATTGAAG-CTAGTAATCCTATCTCCCTAAAGTTGCAGTGGAGTGGATTAAA
64 TTGCAGTGGAGCAGATTGAAGCCGA-TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA
*
8564183 ATAATAGATCTTATCTATCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTTTCATCTCCCTGAGG
128 ATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTTT-ATCTCCCTGAGG
*
8564248 TTGCAGCGGAGCAGACCGAAGAAG
192 TTGCAGCAGAGCAGACCGAAGAAG
* * *
8564272 CAGATATTATCTCTCTAAGCAGAAGTGGAGTAGATCGAAGATGGAAAATCTTATCTCCTTGAGGT
1 CAGATCTTATCTC-CTAAGCAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGT
* *
8564337 TGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCTCTGACGTTGCAGTGGAGCGGATTAAAAT
65 TGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAT
*
8564402 AATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTT
130 AATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGT-TTATCTCCCTGAGGTT
8564467 GCAGCAGAGCAGACCGAAGAAG
194 GCAGCAGAGCAGACCGAAGAAG
* * * *
8564489 CAGATCTTATCTCCTTAAGCAGTAGTGGAGCAAATCGAAGATGGCAAATCTTGTCACCTTGAGGT
1 CAGATCTTATCTCC-TAAGCAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGT
* *
8564554 TACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
65 TGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAT
* * *
8564619 AATAGATCTTATTTCTTTGAAGTTGCAGTAGAGTAGATCGCATAAGGTTTTATCTCC
130 AATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGG-TTTATCTCC
8564676 TTAAGCAATA
Statistics
Matches: 365, Mismatches: 32, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
215 1 0.00
216 52 0.14
217 307 0.84
218 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (215 bp):
CAGATCTTATCTCCTAAGCAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTT
GCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATA
ATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTTTATCTCCCTGAGGTTGC
AGCAGAGCAGACCGAAGAAG
Found at i:8564415 original size:44 final size:44
Alignment explanation
Indices: 8564318--8565291 Score: 212
Period size: 44 Copynumber: 22.5 Consensus size: 44
8564308 GAAGATGGAA
* ** *
8564318 AATCTTATCTC-CTTGAGGTTGCAGTGGAGCAGATTGAAGCCGAT
1 AATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* * * *
8564362 AATCCTATCTCTCTGACGTTGCAGTGGAGCGGATT-AAAATAAT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* * * * *
8564405 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCG-CATC-A-
1 A-ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
** * ** **
8564447 GGTCTTATCTCTCTGAGGTTGCAGCAGAGCAGACCGAAGAAGC-A-
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAA-AA-CAAT
* * ** * * * *
8564491 GATCTTATCTC-CTTAAGCAGTAGTGGAGCAAATCGAAGATGGC-A-
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAA-A--ACAAT
* * * * ** *
8564535 AATCTTGTCAC-CTTGAGGTTACAGTGGAGCAGATTGAAGCCGAT
1 AATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* * *
8564579 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT-AAAACAAT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* * * * *
8564622 AGATCTTATTTCTTTGAAGTTGCAGTAGAGTAGATCG----C-AT
1 A-ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* * **** * * ***
8564662 AAGGTTTTATCTC-CTTAAGCAATAGTGGAGCAGATCGAAGATGGT
1 AA--TCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* * * *
8564707 GAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATT-AAAACAAT
1 -AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* * * * *
8564751 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCG-CATC-A-
1 A-ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
** * ** * * * ***
8564793 GGTCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGATGGT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* * * * **
8564836 GAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATT-AAAATGAT
1 -AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* * *
8564880 AGATCTTATTTCTCTGAAGTTGTAGTAGAGCAGATT-AAAACAAT
1 A-ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* ** * * * *
8564924 AGATCTTATCTCTCTGAAGTTGTAGTAAAGTAGATCG-CATC-A-
1 A-ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
** * * * ** **
8564966 GGTCTTACCTC-CTTGAGGTTGTAGCAGAGCAGACCGAAGAAGC-A-
1 AATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAA-AA-CAAT
* * ** * *
8565010 GATCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCAAAGATGGC-A-
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAA-A---CAAT
* * ** *
8565054 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGAT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* * * *
8565098 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT-AAAATAAT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* * * * *
8565141 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCG-CATC-A-
1 A-ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
** * * ** * ** * *
8565183 GGTCTTATATCCCT-AAGCAGTAGTGGAGCAGATCAAAAATAGT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
* * * * *
8565226 GAATCTTATCTTTCTGAGGTTTCAGTGAAGCGGATT-AAAACAAT
1 -AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
8565270 AGATCTTATCTCTCTGAAGTTG
1 A-ATCTTATCTCTCTGAAGTTG
8565292 TAGTAGAGTA
Statistics
Matches: 665, Mismatches: 213, Indels: 104
0.68 0.22 0.11
Matches are distributed among these distances:
39 1 0.00
40 51 0.08
41 87 0.13
42 5 0.01
43 59 0.09
44 382 0.57
45 75 0.11
46 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACAAT
Found at i:8564457 original size:173 final size:174
Alignment explanation
Indices: 8564278--8565463 Score: 699
Period size: 173 Copynumber: 6.9 Consensus size: 174
8564268 GAAGCAGATA
* * *
8564278 TTATCTCTCT-AAGCAGAAGTGGAGTAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAG
1 TTATCTCTCTGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAG
* ** * * * *
8564342 TGGAGCAGATTGAAGCCGATAATCCTATCTCTCTGACGTTGCAGTGGAGCGGATTAAAATAATAG
66 TGGAGCAGATCGAAGATGATAATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAACAATAG
8564407 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
131 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
* ** * * * * * * ** *
8564451 TTATCTCTCTGAGGTTGCAGCAGAGCAGACCGAAGA-AGCAGATCTTATCTCCTT-AAGCAGTAG
1 TTATCTCTCTGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAG
* * * * ** *
8564514 TGGAGCAAATCGAAGATGGCA-AATCTTGTCAC-CTTGAGGTTACAGTGGAGCAGATTGAAGCCG
66 TGGAGCAGATCGAAGAT-G-ATAATCTTATCTCTC-TGAGGTTGCAGTGGAGCAGATT-AAAACA
* * * ** ** *
8564577 ATA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAAT-AGATC
127 ATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-T--CGC-ATCAGGTC
* * ** * * ** * * **
8564627 TTATTTCTTTGAAGTTGCAGTAGAGTAGATCG--CAT--AAGGTTTTATCTCCTTAAGCAAT--A
1 TTATCTCTCTGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAG-GTTGCA
* * * *
8564686 GTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAAT
65 GTGGAGCAGATCGAAGATGAT-AATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAACAAT
8564751 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
129 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
* * * ** * *
8564797 TTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAG
1 TTATCTCTCTGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAG
* * * * * * *
8564861 TGGAGCGGAT-TAAAATGATAGATCTTATTTCTCTGAAGTTGTAGTAGAGCAGATTAAAACAATA
66 TGGAGCAGATCGAAGATGATA-ATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAACAATA
* *
8564925 GATCTTATCTCTCTGAAGTTGTAGTAAAGTAGATCGCATCAGGTC
130 GATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
* * ** * * * * * * * * ** *
8564970 TTACCTC-CTTGAGGTTGTAGCAGAGCAGACCGAAGA-AGCAGATCTTATCTCCCT-AAGCAGTA
1 TTATCTCTC-TGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCA
* * ** *
8565032 GTGGAGCAGATCAAAGATGGCA-AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCG
65 GTGGAGCAGATCGAAGAT-G-ATAATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATT-AAAACA
* * * ** *** * *
8565096 ATA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAATAGATC
127 ATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-TCGCAT--CAGGTC
** * ** * * * ** *
8565146 TTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCA-GG----TCTTATATCCCT-AAGCAGTA
1 TTATCTCTCTGAAGCAGCAGTAGAGCAGATCG-AAGATGGAAAATCTTATCTCCTTGAGGTTGCA
* * * * * *
8565205 GTGGAGCAGATCAAAAAT-AGTGAATCTTATCTTTCTGAGGTTTCAGTGAAGCGGATTAAAACAA
65 GTGGAGCAGATCGAAGATGA-T-AATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAACAA
*
8565269 TAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTC
128 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
* * * * * ** * *
8565316 TTATCTCCCT-AAGCAGTAGTGGAGCAGATTGAAAATGGTGAATCTTATCTCCCTGAGGTTTCAG
1 TTATCTCTCTGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAG
** * * * * * * * * * *
8565380 TGGAGTGGAT-TAAAATAATAGATCTTATTTCTCTGAGGTTACAATAGAGTAGA-T-CAA-ATTA
66 TGGAGCAGATCGAAGATGATA-ATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAACAATA
*
8565441 GATCTTATCTCCCTGAAGTTGCA
130 GATCTTATCTCTCTGAAGTTGCA
8565464 ACGGAGCAGA
Statistics
Matches: 768, Mismatches: 198, Indels: 97
0.72 0.19 0.09
Matches are distributed among these distances:
168 2 0.00
169 35 0.05
170 50 0.07
171 4 0.01
172 54 0.07
173 476 0.62
174 81 0.11
175 1 0.00
176 59 0.08
177 6 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (174 bp):
TTATCTCTCTGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAG
TGGAGCAGATCGAAGATGATAATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAACAATAG
ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
Found at i:8564742 original size:129 final size:129
Alignment explanation
Indices: 8564557--8565454 Score: 855
Period size: 129 Copynumber: 6.9 Consensus size: 129
8564547 TTGAGGTTAC
* ** * * * *
8564557 AGTGGAGCAGATTGAAGCCGAT-AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
* * * * *
8564621 TAGATCTTATTTCTTTGAAGTTGCAGTAGAGTAGATCGCATAAGGTTTTATCTCCTTAAGCAAT
66 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTCTTATCTCCCTAAGCAGT
8564685 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
*
8564750 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTAAGCAGT
66 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTCTTATCTCCCTAAGCAGT
**
8564814 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAATGA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
* * * ** * *
8564879 TAGATCTTATTTCTCTGAAGTTGTAGTAGAGCAGATTAAAACA-ATAGATCTTATCTCTCTGAAG
66 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-T--CGCATA-AGGTCTTATCTCCCT-AAG
**
8564943 TTGT
126 CAGT
** * * * * * ** * ** *
8564947 AGTAAAGTAGATCG--CATCAG-G--TCTTACCTCCTTGAGGTTGT-AGCAGAGCAGACCGAAGA
1 AGTGGAGCAGATCGAAGAT-GGTGAATCTTATCTCCCTGAGGTT-TCAGTGGAGCGGA-TTAAAA
** * ** * * * ** * *
8565006 -AGCAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCCTG
63 CAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGG----TCTTATCTCCCT-
* ** *
8565069 AGGTTGC
123 AAGCAGT
* ** * * * * *
8565076 AGTGGAGCAGATTGAAGCCGAT-AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
* *
8565140 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATATCCCTAAGCAGT
66 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTCTTATCTCCCTAAGCAGT
* * * ** *
8565204 AGTGGAGCAGATCAAAAATAGTGAATCTTATCTTTCTGAGGTTTCAGTGAAGCGGATTAAAACAA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
* *
8565269 TAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTAAGCAGT
66 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTCTTATCTCCCTAAGCAGT
* * * *
8565333 AGTGGAGCAGATTGAAAATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGTGGATTAAAATAA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
* * * * ** * *
8565398 TAGATCTTATTTCTCTGAGGTTACAATAGAGTAGATCAAATTAGATCTTATCTCCCT
66 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTCTTATCTCCCT
8565455 GAAGTTGCAA
Statistics
Matches: 623, Mismatches: 124, Indels: 45
0.79 0.16 0.06
Matches are distributed among these distances:
125 3 0.00
126 1 0.00
127 1 0.00
128 51 0.08
129 469 0.75
130 5 0.01
131 6 0.01
132 53 0.09
133 34 0.05
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (129 bp):
AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTCTTATCTCCCTAAGCAGT
Found at i:8565084 original size:88 final size:87
Alignment explanation
Indices: 8564449--8565251 Score: 258
Period size: 88 Copynumber: 9.3 Consensus size: 87
8564439 TCGCATCAGG
* * * * *
8564449 TCTTATCTCTCTGAGGTTGCAGCAGAGCAGACCGAAGAAGCAGATCTTATCTCCTTAAGCAGTAG
1 TCTTATCTCCCTGAGGTTGCAGTAGAGCAGATCGAAGCAGCAGATCTTATCTCCCTAAGCAGTAG
* * * *
8564514 TGGAGCAAATCGAAGATGGCAAA
66 TGGAGCAGATC-AAAATAGTAAA
* * * * * * * * * ** *
8564537 TCTTGTCACCTTGAGGTTACAGTGGAGCAGATTGAAGCCG-ATAATCCTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAGGTTGCAGTAGAGCAGATCGAAGCAGCA-GATCTTATCTCCCT-AAGCAGT
* * * * *
8564601 AGTGGAGCGGATTAAAACAATAGA
64 AGTGGAGCAGATCAAAATAGTAAA
* ** * * ** * * * *
8564625 TCTTATTTCTTTGAAGTTGCAGTAGAGTAGATC---GCATAAGGTTTTATCTCCTTAAGCAATAG
1 TCTTATCTCCCTGAGGTTGCAGTAGAGCAGATCGAAGCAGCAGATCTTATCTCCCTAAGCAGTAG
* * *
8564687 TGGAGCAGATCGAAGATGGTGAA
66 TGGAGCAGATC-AAAATAGTAAA
* * * ** * ** * ** *
8564710 TCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCA
1 TCTTATCTCCCTGAGGTTGCAGTAGAGCAGATCGAAGCAGCAGATCTTATCTCCCT-AAGCAGTA
* * ** *
8564775 GTAGAGTAGATC-GCATCAG---G
65 GTGGAGCAGATCAAAAT-AGTAAA
* ** * * ** * ***
8564795 TCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAG-ATGGTGAATCTTATCTCCCTGAGGTTT
1 TCTTATCTCCCTGAGGTTGCAGTAGAGCAGATCGAAGCA-GCAG-ATCTTATCTCCCTAAGCAGT
* * *
8564858 CAGTGGAGCGGATTAAAAT-GATAGA
64 -AGTGGAGCAGATCAAAATAG-TAAA
* * * * ** * ** * **
8564883 TCTTATTTCTCTGAAGTTGTAGTAGAGCAGATTAAAACAATAGATCTTATCTCTCTGAAGTTGTA
1 TCTTATCTCCCTGAGGTTGCAGTAGAGCAGATCGAAGCAGCAGATCTTATCTCCCT-AAGCAGTA
** * ** *
8564948 GTAAAGTAGATC-GCATCAG---G
65 GTGGAGCAGATCAAAAT-AGTAAA
* * * * * *
8564968 TCTTACCTCCTTGAGGTTGTAGCAGAGCAGACCGAAGAAGCAGATCTTATCTCCCTAAGCAGTAG
1 TCTTATCTCCCTGAGGTTGCAGTAGAGCAGATCGAAGCAGCAGATCTTATCTCCCTAAGCAGTAG
* *
8565033 TGGAGCAGATCAAAGATGGCAAA
66 TGGAGCAGATCAAA-ATAGTAAA
* * * * * ** *
8565056 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCG-ATAATCCTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAGGTTGCAGTAGAGCAGATCGAAGCAGCA-GATCTTATCTCCCT-AAGCAGT
* * * *
8565120 AGTGGAGCGGATTAAAATAATAGA
64 AGTGGAGCAGATCAAAATAGTAAA
* * * * * *
8565144 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGATC---GCATCAGGTCTTATATCCCTAAGCAGTAG
1 TCTTATCTCCCTGAGGTTGCAGTAGAGCAGATCGAAGCAGCAGATCTTATCTCCCTAAGCAGTAG
*
8565206 TGGAGCAGATCAAAAATAGTGAA
66 TGGAGCAGATC-AAAATAGTAAA
** *
8565229 TCTTATCTTTCTGAGGTTTCAGT
1 TCTTATCTCCCTGAGGTTGCAGT
8565252 GAAGCGGATT
Statistics
Matches: 492, Mismatches: 192, Indels: 65
0.66 0.26 0.09
Matches are distributed among these distances:
83 1 0.00
84 64 0.13
85 156 0.32
86 6 0.01
87 6 0.01
88 188 0.38
89 70 0.14
90 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (87 bp):
TCTTATCTCCCTGAGGTTGCAGTAGAGCAGATCGAAGCAGCAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCAAAATAGTAAA
Found at i:8565116 original size:217 final size:217
Alignment explanation
Indices: 8564795--8565189 Score: 621
Period size: 217 Copynumber: 1.8 Consensus size: 217
8564785 TCGCATCAGG
* ** *
8564795 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCCTGAGGTTGCA
* * * * * *
8564860 GTGGAGCGGATTAAAATGATAGATCTTATTTCTCTGAAGTTGTAGTAGAGCAGATTAAAACAATA
66 GTGGAGCAGATTAAAACGATAGATCCTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACAATA
*
8564925 GATCTTATCTCTCTGAAGTTGTAGTAAAGTAGATCGCATCAGGTCTTACCTCCTTGAGGTTGTAG
131 GATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCAGGTCTTACCTCCTTGAGGTTGTAG
8564990 CAGAGCAGACCGAAGAAGCAGA
196 CAGAGCAGACCGAAGAAGCAGA
8565012 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCCTGAGGTTGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCCTGAGGTTGCA
** * * *
8565077 GTGGAGCAGATTGAAGCCGATA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAT
66 GTGGAGCAGATT-AAAACGATAGATCCTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACAAT
*
8565141 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTA
130 AGATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCAGGTCTTA
8565190 TATCCCTAAG
Statistics
Matches: 160, Mismatches: 17, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
217 154 0.96
218 6 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (217 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCCTGAGGTTGCA
GTGGAGCAGATTAAAACGATAGATCCTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACAATA
GATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCAGGTCTTACCTCCTTGAGGTTGTAG
CAGAGCAGACCGAAGAAGCAGA
Found at i:8565129 original size:519 final size:519
Alignment explanation
Indices: 8564278--8565463 Score: 1824
Period size: 519 Copynumber: 2.3 Consensus size: 519
8564268 GAAGCAGATA
* * * ** * *
8564278 TTATCTCTCTAAGCAGAAGTGGAGTAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAGT
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGT
* *** * * * * * *
8564343 GGAGCAGATTGAAGCCGATA-ATCCTATCTCTCTGACGTTGCAGTGGAGCGGATTAAAATAATAG
66 GGAGCGGATT-AAAATGATAGATCTTATTTCTCTGAAGTTGCAGTAGAGCAGATTAAAACAATAG
* *
8564407 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTGCAGC
130 ATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCAGGTCTTACCTCTCTGAGGTTGCAGC
* *
8564472 AGAGCAGACCGAAGAAGCAGATCTTATCTCCTTAAGCAGTAGTGGAGCAAATCGAAGATGGCAAA
195 AGAGCAGACCGAAGAAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGATGGCAAA
* *
8564537 TCTTGTCACCTTGAGGTTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCA
260 TCTTATCACCCTGAGGTTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCA
* *
8564602 GTGGAGCGGATTAAAACAATAGATCTTATTTCTTTGAAGTTGCAGTAGAGTAGATCGCATAAGGT
325 GTGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGT
* * * * * *
8564667 TTTATCTCCTTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAG
390 CTTATATCCCTAAGCAATAGTGGAGCAGATCAAAAATAGTGAATCTTATCTCCCTGAGGTTTCAG
*
8564732 TGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
455 TGAAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
8564797 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGT
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGT
*
8564862 GGAGCGGATTAAAATGATAGATCTTATTTCTCTGAAGTTGTAGTAGAGCAGATTAAAACAATAGA
66 GGAGCGGATTAAAATGATAGATCTTATTTCTCTGAAGTTGCAGTAGAGCAGATTAAAACAATAGA
* *
8564927 TCTTATCTCTCTGAAGTTGTAGTAAAGTAGATCGCATCAGGTCTTACCTC-CTTGAGGTTGTAGC
131 TCTTATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCAGGTCTTACCTCTC-TGAGGTTGCAGC
*
8564991 AGAGCAGACCGAAGAAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAAA
195 AGAGCAGACCGAAGAAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGATGGCAAA
* *
8565056 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCA
260 TCTTATCACCCTGAGGTTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCA
* *
8565121 GTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGT
325 GTGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGT
* **
8565186 CTTATATCCCTAAGCAGTAGTGGAGCAGATCAAAAATAGTGAATCTTATCTTTCTGAGGTTTCAG
390 CTTATATCCCTAAGCAATAGTGGAGCAGATCAAAAATAGTGAATCTTATCTCCCTGAGGTTTCAG
*
8565251 TGAAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTC
455 TGAAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
* *
8565316 TTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAAATGGTGAATCTTATCTCCCTGAGGTTTCAGT
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGT
* * * * * * * *
8565381 GGAGTGGATTAAAATAATAGATCTTATTTCTCTGAGGTTACAATAGAGTAGA-T-CAA-ATTAGA
66 GGAGCGGATTAAAATGATAGATCTTATTTCTCTGAAGTTGCAGTAGAGCAGATTAAAACAATAGA
*
8565443 TCTTATCTCCCTGAAGTTGCA
131 TCTTATCTCTCTGAAGTTGCA
8565464 ACGGAGCAGA
Statistics
Matches: 608, Mismatches: 57, Indels: 7
0.90 0.08 0.01
Matches are distributed among these distances:
516 24 0.04
517 2 0.00
518 8 0.01
519 574 0.94
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (519 bp):
TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGT
GGAGCGGATTAAAATGATAGATCTTATTTCTCTGAAGTTGCAGTAGAGCAGATTAAAACAATAGA
TCTTATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCAGGTCTTACCTCTCTGAGGTTGCAGCA
GAGCAGACCGAAGAAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGATGGCAAAT
CTTATCACCCTGAGGTTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCAG
TGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTC
TTATATCCCTAAGCAATAGTGGAGCAGATCAAAAATAGTGAATCTTATCTCCCTGAGGTTTCAGT
GAAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
Found at i:8565405 original size:44 final size:41
Alignment explanation
Indices: 8565357--8565456 Score: 110
Period size: 44 Copynumber: 2.4 Consensus size: 41
8565347 AAAATGGTGA
* * * *
8565357 ATCTTATCTCCCTGAGGTTTCAGTGGAGTGGATTAAAATAATAG
1 ATCTTATCTCCCTGAGGTTACAATAGAGTAGA-TAAAAT--TAG
* * *
8565401 ATCTTATTTCTCTGAGGTTACAATAGAGTAGATCAAATTAG
1 ATCTTATCTCCCTGAGGTTACAATAGAGTAGATAAAATTAG
8565442 ATCTTATCTCCCTGA
1 ATCTTATCTCCCTGA
8565457 AGTTGCAACG
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
41 16 0.34
43 5 0.11
44 26 0.55
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (41 bp):
ATCTTATCTCCCTGAGGTTACAATAGAGTAGATAAAATTAG
Found at i:8567166 original size:23 final size:22
Alignment explanation
Indices: 8567134--8567181 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
8567124 TATGTTGATG
8567134 TTTTAAATCTATTATATATT-TTA
1 TTTTAAATCTA--ATATATTATTA
*
8567157 TTTTATATCTAATATATTATTA
1 TTTTAAATCTAATATATTATTA
8567179 TTT
1 TTT
8567182 ATTTCATCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
22 6 0.26
23 10 0.43
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTTAAATCTAATATATTATTA
Found at i:8574665 original size:14 final size:14
Alignment explanation
Indices: 8574646--8574675 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8574636 TTTGGGAATC
8574646 GATCAATGACGTAA
1 GATCAATGACGTAA
*
8574660 GATCAATGATGTAA
1 GATCAATGACGTAA
8574674 GA
1 GA
8574676 AATGCGGACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.23
Consensus pattern (14 bp):
GATCAATGACGTAA
Found at i:8576714 original size:9 final size:9
Alignment explanation
Indices: 8576702--8576812 Score: 53
Period size: 10 Copynumber: 11.4 Consensus size: 9
8576692 ATTTTAAATA
8576702 TTTTTATA-
1 TTTTTATAT
8576710 TTTTTATATT
1 TTTTTATA-T
*
8576720 TTTTTACAAT
1 TTTTTA-TAT
8576730 TTTTATATAT
1 TTTT-TATAT
*
8576740 TTTTAATAT
1 TTTTTATAT
**
8576749 TTTCTTGCACT
1 TTT-TTATA-T
*
8576760 TTTTATAATTT
1 TTTT-T-ATAT
*
8576771 TTTTTACAT
1 TTTTTATAT
*
8576780 TTGTTATGAT
1 TTTTTAT-AT
* *
8576790 TTTCTATAA
1 TTTTTATAT
8576799 TTTTTATGAT
1 TTTTTAT-AT
8576809 TTTT
1 TTTT
8576813 AACAATTTTA
Statistics
Matches: 75, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
8 8 0.11
9 21 0.28
10 33 0.44
11 13 0.17
ACGTcount: A:0.23, C:0.05, G:0.04, T:0.68
Consensus pattern (9 bp):
TTTTTATAT
Found at i:8576744 original size:10 final size:10
Alignment explanation
Indices: 8576693--8576751 Score: 63
Period size: 9 Copynumber: 6.3 Consensus size: 10
8576683 ATATATAAAA
*
8576693 TTTTAAATA-
1 TTTTATATAT
8576702 TTTT-TATAT
1 TTTTATATAT
*
8576711 TTTTATATTT
1 TTTTATATAT
*
8576721 TTTTACA-AT
1 TTTTATATAT
8576730 TTTTATATAT
1 TTTTATATAT
8576740 TTTTA-ATAT
1 TTTTATATAT
8576749 TTT
1 TTT
8576752 CTTGCACTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
8 3 0.07
9 22 0.52
10 17 0.40
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTATATAT
Found at i:8576750 original size:19 final size:19
Alignment explanation
Indices: 8576693--8576751 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
8576683 ATATATAAAA
*
8576693 TTTTAAATATTTTT-ATAT
1 TTTTATATATTTTTAATAT
*
8576711 TTTTATATTTTTTTACA-AT
1 TTTTATATATTTTTA-ATAT
8576730 TTTTATATATTTTTAATAT
1 TTTTATATATTTTTAATAT
8576749 TTT
1 TTT
8576752 CTTGCACTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 13 0.37
19 21 0.60
20 1 0.03
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTATATATTTTTAATAT
Found at i:8576773 original size:30 final size:28
Alignment explanation
Indices: 8576701--8576773 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 28
8576691 AATTTTAAAT
*
8576701 ATTTTTATA-TTTTTATATTTTTTTACA
1 ATTTTTATATTTTTTATATTTTCTTACA
*
8576728 ATTTTTATATATTTTTAATATTTTCTTGCA
1 ATTTTTATAT-TTTTT-ATATTTTCTTACA
*
8576758 CTTTTTATAATTTTTT
1 ATTTTTAT-ATTTTTT
8576774 TTACATTTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 9 0.23
29 5 0.13
30 23 0.59
31 2 0.05
ACGTcount: A:0.25, C:0.05, G:0.01, T:0.68
Consensus pattern (28 bp):
ATTTTTATATTTTTTATATTTTCTTACA
Found at i:8576805 original size:19 final size:20
Alignment explanation
Indices: 8576701--8576811 Score: 72
Period size: 19 Copynumber: 5.7 Consensus size: 20
8576691 AATTTTAAAT
*
8576701 ATTTTTAT-ATTTT-TATAT
1 ATTTTTATGATTTTCTATAC
* ** *
8576719 TTTTTTACAATTTT-TATAT
1 ATTTTTATGATTTTCTATAC
*
8576738 ATTTTTAAT-ATTTTCT-TGC
1 ATTTTT-ATGATTTTCTATAC
* * *
8576757 ACTTTTTATAATTTTTTTTAC
1 A-TTTTTATGATTTTCTATAC
8576778 ATTTGTTATGATTTTCTATA-
1 ATTT-TTATGATTTTCTATAC
8576798 ATTTTTATGATTTT
1 ATTTTTATGATTTT
8576812 TAACAATTTT
Statistics
Matches: 75, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
18 6 0.08
19 34 0.45
20 20 0.27
21 15 0.20
ACGTcount: A:0.24, C:0.05, G:0.04, T:0.67
Consensus pattern (20 bp):
ATTTTTATGATTTTCTATAC
Found at i:8576819 original size:19 final size:19
Alignment explanation
Indices: 8576778--8576821 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
8576768 TTTTTTTTAC
*
8576778 ATTTGTTATGATTTTCTATA
1 ATTT-TTATGATTTTCTACA
8576798 ATTTTTATGATTTT-TAACA
1 ATTTTTATGATTTTCT-ACA
8576817 ATTTT
1 ATTTT
8576822 AAACAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 17 0.77
20 4 0.18
ACGTcount: A:0.27, C:0.05, G:0.07, T:0.61
Consensus pattern (19 bp):
ATTTTTATGATTTTCTACA
Found at i:8577410 original size:25 final size:25
Alignment explanation
Indices: 8577376--8577431 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
8577366 TTCAAAAAAT
* * *
8577376 AAATATATTTATTATATATTATAAA
1 AAATAAATTTATTATAAATAATAAA
* *
8577401 AAATAAATTTATTTTAAATAATTAA
1 AAATAAATTTATTATAAATAATAAA
8577426 AAATAA
1 AAATAA
8577432 TATAATATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
AAATAAATTTATTATAAATAATAAA
Found at i:8579667 original size:25 final size:25
Alignment explanation
Indices: 8579603--8579675 Score: 103
Period size: 24 Copynumber: 3.0 Consensus size: 25
8579593 GCAGACACAC
*
8579603 CACAGCTCGTATGAGCTTACCTATT
1 CACAGCTCGTATGAGCTTACCGATT
* *
8579628 -TCAGCTCGTAAGAGCTTACCGATT
1 CACAGCTCGTATGAGCTTACCGATT
*
8579652 CACAGCTTGTATGAGCTTACCGAT
1 CACAGCTCGTATGAGCTTACCGAT
8579676 ATTCAGCTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 21 0.51
25 20 0.49
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (25 bp):
CACAGCTCGTATGAGCTTACCGATT
Found at i:8579682 original size:25 final size:24
Alignment explanation
Indices: 8579605--8579716 Score: 118
Period size: 25 Copynumber: 4.6 Consensus size: 24
8579595 AGACACACCA
*
8579605 CAGCTCGTATGAGCTTACCTATTT
1 CAGCTCGTATGAGCTTACCGATTT
* *
8579629 CAGCTCGTAAGAGCTTACCGATTCA
1 CAGCTCGTATGAGCTTACCGATT-T
*
8579654 CAGCTTGTATGAGCTTACCGATATT
1 CAGCTCGTATGAGCTTACCGAT-TT
* * * *
8579679 CAGCTCGGAGGAGGTTACCGTTTAT
1 CAGCTCGTATGAGCTTACCGATT-T
8579704 C-GCTCGTATGAGC
1 CAGCTCGTATGAGC
8579717 ATAGATGTAC
Statistics
Matches: 71, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
24 31 0.44
25 39 0.55
26 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.30
Consensus pattern (24 bp):
CAGCTCGTATGAGCTTACCGATTT
Found at i:8579713 original size:49 final size:49
Alignment explanation
Indices: 8579603--8579716 Score: 142
Period size: 49 Copynumber: 2.3 Consensus size: 49
8579593 GCAGACACAC
* *
8579603 CACAGCTCGTATGAGCTTACCTATTTCAGCTCGTAAGAGCTTACCGATT
1 CACAGCTCGTATGAGCTTACCGATTTCAGCTCGGAAGAGCTTACCGATT
* * *
8579652 CACAGCTTGTATGAGCTTACCGATATTCAGCTCGGAGGAGGTTACCG-TT
1 CACAGCTCGTATGAGCTTACCGAT-TTCAGCTCGGAAGAGCTTACCGATT
*
8579701 TATC-GCTCGTATGAGC
1 CA-CAGCTCGTATGAGC
8579717 ATAGATGTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
49 36 0.64
50 20 0.36
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (49 bp):
CACAGCTCGTATGAGCTTACCGATTTCAGCTCGGAAGAGCTTACCGATT
Found at i:8585591 original size:27 final size:27
Alignment explanation
Indices: 8585555--8585621 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
8585545 ATAGAGCATG
*
8585555 CAGTTATTTTATAACATAGGGGCATAA
1 CAGTCATTTTATAACATAGGGGCATAA
** * *
8585582 CAGTCATTTTACCACGTGGGGGCATAA
1 CAGTCATTTTATAACATAGGGGCATAA
*
8585609 CGGTCATTTTATA
1 CAGTCATTTTATA
8585622 TCAGTTTGGG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (27 bp):
CAGTCATTTTATAACATAGGGGCATAA
Found at i:8589888 original size:24 final size:24
Alignment explanation
Indices: 8589818--8589882 Score: 105
Period size: 24 Copynumber: 2.7 Consensus size: 24
8589808 GGACACACCA
8589818 CAGCTCGT-ATGAGCTTACCGATTT
1 CAGCTCGTGA-GAGCTTACCGATTT
*
8589842 TAGCTCGTGAGAGCTTACCGATTT
1 CAGCTCGTGAGAGCTTACCGATTT
8589866 CAGCTCGTGAGAGCTTA
1 CAGCTCGTGAGAGCTTA
8589883 TTGATTCACA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 37 0.97
25 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (24 bp):
CAGCTCGTGAGAGCTTACCGATTT
Found at i:8597659 original size:17 final size:17
Alignment explanation
Indices: 8597637--8597670 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8597627 AATATTGCAC
8597637 TTAGGGCTTTAGAATTG
1 TTAGGGCTTTAGAATTG
8597654 TTAGGGCTTTAGAATTG
1 TTAGGGCTTTAGAATTG
8597671 CTATGGACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.06, G:0.29, T:0.41
Consensus pattern (17 bp):
TTAGGGCTTTAGAATTG
Found at i:8599651 original size:17 final size:17
Alignment explanation
Indices: 8599618--8599651 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8599608 TTAATGAGCT
*
8599618 TCTTACAATCAATTATC
1 TCTTACAATCAAGTATC
*
8599635 TCTTACAATCACGTATC
1 TCTTACAATCAAGTATC
8599652 ATGTACAAGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.38
Consensus pattern (17 bp):
TCTTACAATCAAGTATC
Found at i:8602247 original size:19 final size:19
Alignment explanation
Indices: 8602223--8602259 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8602213 AGTAAATCAT
*
8602223 TTTAGTTTATTTTATTTTA
1 TTTAGTTTACTTTATTTTA
8602242 TTTAGTTTACTTTATTTT
1 TTTAGTTTACTTTATTTT
8602260 TCTCGTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.73
Consensus pattern (19 bp):
TTTAGTTTACTTTATTTTA
Found at i:8604530 original size:23 final size:22
Alignment explanation
Indices: 8604504--8604546 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
8604494 TTTAATTAAT
8604504 GCAAATGAAAACAAAACCATGTA
1 GCAAAT-AAAACAAAACCATGTA
* *
8604527 GCAACTCAAACAAAACCATG
1 GCAAATAAAACAAAACCATG
8604547 ATGTAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.53, C:0.23, G:0.12, T:0.12
Consensus pattern (22 bp):
GCAAATAAAACAAAACCATGTA
Found at i:8608832 original size:16 final size:16
Alignment explanation
Indices: 8608811--8608843 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8608801 CCATTTTTCT
*
8608811 TTTATATATATATATA
1 TTTATAAATATATATA
8608827 TTTATAAATATATATA
1 TTTATAAATATATATA
8608843 T
1 T
8608844 GTGTGTCTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTATAAATATATATA
Found at i:8609646 original size:17 final size:16
Alignment explanation
Indices: 8609614--8609653 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
8609604 TAATTTATTA
8609614 AATAAAA-ATGATTTT
1 AATAAAATATGATTTT
*
8609629 AATTAAAATATTATTTT
1 AA-TAAAATATGATTTT
8609646 AATAAAAT
1 AATAAAAT
8609654 GCTTAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 2 0.09
16 11 0.50
17 9 0.41
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
AATAAAATATGATTTT
Found at i:8617002 original size:30 final size:32
Alignment explanation
Indices: 8616960--8617019 Score: 97
Period size: 30 Copynumber: 1.9 Consensus size: 32
8616950 TGGGGTGGGA
*
8616960 TGGGAGGAGAGTAAAAGTTTTGGG-GAAAAAG
1 TGGGAGGAGAGTAAAAGTATTGGGAGAAAAAG
8616991 TGGGAGG-GAGTAAAAGTATTGGGAGAAAA
1 TGGGAGGAGAGTAAAAGTATTGGGAGAAAA
8617020 TAAAAAGGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 15 0.56
31 12 0.44
ACGTcount: A:0.40, C:0.00, G:0.42, T:0.18
Consensus pattern (32 bp):
TGGGAGGAGAGTAAAAGTATTGGGAGAAAAAG
Found at i:8618318 original size:233 final size:233
Alignment explanation
Indices: 8617904--8618352 Score: 763
Period size: 233 Copynumber: 1.9 Consensus size: 233
8617894 GTTGTTGTCT
*
8617904 AGTAACCAAGATGCATATACATTCGGCAAAAGGAACCAAAACAACATTAATTTTGTCAAGGAAAT
1 AGTAACCAAGATGCATATACATTCGGCAAAAGGAACCAAAACAACATTAATCTTGTCAAGGAAAT
* *
8617969 TTAAGCCAAGAACATAGTTGTAATCATCCTAGTGAATTACCTTGAAGTCTTCCTTGCCTTTCTAT
66 TTAAGCCAAGAACATAGTTGTAATCATCCAAGTGAATTACCTCGAAGTCTTCCTTGCCTTTCTAT
* * * * *
8618034 TGACCAATCCATAGCTCAACTCTTTCTACTACTTTCACAATTGGGACCTCTTTGGAATCTTTATC
131 TGACCAATCCATAGCTCAACCCCTTCTACTACTCTCACAATTGGAACCTCTTTGGAATCATTATC
8618099 TTTTTAGTTAATTCATTAACTAAAACATCAATCTTGTG
196 TTTTTAGTTAATTCATTAACTAAAACATCAATCTTGTG
* *
8618137 AGTATCCAAGATGCATATACATTTGGCAAAAGGAACCAAAACAACATTAATCTTGTCAAGGAAAT
1 AGTAACCAAGATGCATATACATTCGGCAAAAGGAACCAAAACAACATTAATCTTGTCAAGGAAAT
*
8618202 TTAAGCCAAGAACATAGTTGTAATCATCCAAGTGAATTACCTCGAAGTCTTTCTTGCCTTTCTAT
66 TTAAGCCAAGAACATAGTTGTAATCATCCAAGTGAATTACCTCGAAGTCTTCCTTGCCTTTCTAT
* **
8618267 TGACCAATCCATAGCTCAACCCCTTCTGCTACTCTCACGGTTGGAACCTCTTTGGAATCATTATC
131 TGACCAATCCATAGCTCAACCCCTTCTACTACTCTCACAATTGGAACCTCTTTGGAATCATTATC
*
8618332 TTTTTAGTTTATTCATTAACT
196 TTTTTAGTTAATTCATTAACT
8618353 GAGAGACCAA
Statistics
Matches: 201, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
233 201 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.33
Consensus pattern (233 bp):
AGTAACCAAGATGCATATACATTCGGCAAAAGGAACCAAAACAACATTAATCTTGTCAAGGAAAT
TTAAGCCAAGAACATAGTTGTAATCATCCAAGTGAATTACCTCGAAGTCTTCCTTGCCTTTCTAT
TGACCAATCCATAGCTCAACCCCTTCTACTACTCTCACAATTGGAACCTCTTTGGAATCATTATC
TTTTTAGTTAATTCATTAACTAAAACATCAATCTTGTG
Found at i:8620421 original size:59 final size:60
Alignment explanation
Indices: 8620296--8620430 Score: 170
Period size: 59 Copynumber: 2.3 Consensus size: 60
8620286 ACCATACTAG
** * *
8620296 TAGTCACTCAACTATTAGTATTTTTTTTTTTTGATATCCCAACTATAAAAAGTTATAAAA
1 TAGTCACTCAACTATTAGTAAATTTCTTTTTTGATATCCCAACTATAAAAAGTTACAAAA
*
8620356 -AGGTCACTCAACTATTAGTAAATTTCTTTTTTG-TCA-CCCAACTATGAAAAGTTACAAAA
1 TA-GTCACTCAACTATTAGTAAATTTCTTTTTTGAT-ATCCCAACTATAAAAAGTTACAAAA
8620415 TAGTCAC-CTAACTATT
1 TAGTCACTC-AACTATT
8620431 TAATTTCGTC
Statistics
Matches: 66, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
58 1 0.02
59 35 0.53
60 30 0.45
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.39
Consensus pattern (60 bp):
TAGTCACTCAACTATTAGTAAATTTCTTTTTTGATATCCCAACTATAAAAAGTTACAAAA
Found at i:8620443 original size:59 final size:58
Alignment explanation
Indices: 8620298--8620447 Score: 146
Period size: 59 Copynumber: 2.5 Consensus size: 58
8620288 CATACTAGTA
** * *
8620298 GTCACTCAACTATTAGTATTTTTTTTTTTTGAT-ATCCCAACTATAAAAAGTTATAAAAAG
1 GTCACTCAACTATTA-TAAATTTCTTTTTTG-TCA-CCCAACTATAAAAAGTTACAAAAAG
*
8620358 GTCACTCAACTATTAGTAAATTTCTTTTTTGTCACCCAACTATGAAAAGTTACAAAATA-
1 GTCACTCAACTATTA-TAAATTTCTTTTTTGTCACCCAACTATAAAAAGTTACAAAA-AG
*
8620417 GTCAC-CTAACTATT-TAATTTCGTCTTTTTTG
1 GTCACTC-AACTATTATAAATT--TCTTTTTTG
8620448 GTAACTAGCT
Statistics
Matches: 79, Mismatches: 6, Indels: 11
0.82 0.06 0.11
Matches are distributed among these distances:
57 5 0.06
58 1 0.01
59 43 0.54
60 30 0.38
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (58 bp):
GTCACTCAACTATTATAAATTTCTTTTTTGTCACCCAACTATAAAAAGTTACAAAAAG
Found at i:8621116 original size:7 final size:7
Alignment explanation
Indices: 8621104--8621130 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8621094 TCTGTGCTTA
8621104 AATTTTC
1 AATTTTC
8621111 AATTTTC
1 AATTTTC
8621118 AATTTTC
1 AATTTTC
8621125 AATTTT
1 AATTTT
8621131 TAAGATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.59
Consensus pattern (7 bp):
AATTTTC
Found at i:8621990 original size:16 final size:17
Alignment explanation
Indices: 8621958--8621990 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8621948 TCCTTTCAAA
*
8621958 ATATTTAATTTTGTAAT
1 ATATTTAATTTTATAAT
8621975 ATATTT-ATTTTATAAT
1 ATATTTAATTTTATAAT
8621991 TTGATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
ATATTTAATTTTATAAT
Found at i:8622129 original size:24 final size:23
Alignment explanation
Indices: 8622086--8622133 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
8622076 ATCATTATCT
8622086 TTTAATATTATTTTCCTATTAAAA
1 TTTAATATTATTTT-CTATTAAAA
8622110 TTTAATATTTTATTTT-TATTAAAA
1 TTTAATA--TTATTTTCTATTAAAA
8622134 AATATTATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 15 0.68
26 7 0.32
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTAATATTATTTTCTATTAAAA
Found at i:8622185 original size:26 final size:26
Alignment explanation
Indices: 8622152--8622263 Score: 134
Period size: 26 Copynumber: 4.1 Consensus size: 26
8622142 GGAAATTCAT
*
8622152 GATAATAATAATTTTAAAATTTAAGG
1 GATAATAATAATTTTAAAATTTAAGA
8622178 GATAATAATAACTATTTTAAAATTTAATAGA
1 GATAATAAT-A--ATTTTAAAATTT-A-AGA
* *
8622209 TGATAATAATTATTTTAAACTTTAAGA
1 -GATAATAATAATTTTAAAATTTAAGA
*
8622236 GATAATAATAATTTTAAATTTTAAGA
1 GATAATAATAATTTTAAAATTTAAGA
8622262 GA
1 GA
8622264 GAATTACTAT
Statistics
Matches: 75, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
26 35 0.47
27 4 0.05
28 1 0.01
29 23 0.31
30 1 0.01
31 2 0.03
32 9 0.12
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (26 bp):
GATAATAATAATTTTAAAATTTAAGA
Found at i:8622194 original size:29 final size:28
Alignment explanation
Indices: 8622153--8622263 Score: 136
Period size: 29 Copynumber: 3.9 Consensus size: 28
8622143 GAAATTCATG
*
8622153 ATAATAATAATTTTAAAATTTAAGGGATA
1 ATAATAAT-ATTTTAAAATTTAAGAGATA
* *
8622182 ATAATAACTATTTTAAAATTTAATAGATG
1 ATAATAA-TATTTTAAAATTTAAGAGATA
*
8622211 ATAATAATTATTTTAAACTTTAAGAGATA
1 ATAATAA-TATTTTAAAATTTAAGAGATA
*
8622240 ATAAT-A-ATTTTAAATTTTAAGAGA
1 ATAATAATATTTTAAAATTTAAGAGA
8622264 GAATTACTAT
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 17 0.23
28 1 0.01
29 54 0.74
30 1 0.01
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.41
Consensus pattern (28 bp):
ATAATAATATTTTAAAATTTAAGAGATA
Found at i:8622276 original size:58 final size:57
Alignment explanation
Indices: 8622150--8622263 Score: 160
Period size: 58 Copynumber: 2.0 Consensus size: 57
8622140 ATGGAAATTC
* *
8622150 ATGATAATAATAATTTTAAAATTTAAGGGATAATAATAACTATTTTAAAATTTAATAG
1 ATGATAATAATAATTTTAAAATTTAAGAGATAATAATAAC-ATTTTAAAATTTAAGAG
* * *
8622208 ATGATAATAATTATTTTAAACTTTAAGAGATAATAAT-A-ATTTTAAATTTTAAGAG
1 ATGATAATAATAATTTTAAAATTTAAGAGATAATAATAACATTTTAAAATTTAAGAG
8622263 A
1 A
8622264 GAATTACTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
55 16 0.31
57 1 0.02
58 34 0.67
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (57 bp):
ATGATAATAATAATTTTAAAATTTAAGAGATAATAATAACATTTTAAAATTTAAGAG
Found at i:8624024 original size:30 final size:29
Alignment explanation
Indices: 8623990--8624048 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
8623980 GAATTTGATC
*
8623990 AAATCAAAATTTCT-TGTTTAAAATTGCACA
1 AAATC-AAATTT-TATGTATAAAATTGCACA
*
8624020 AAATCAAATTTTATGTATACAATTGCACA
1 AAATCAAATTTTATGTATAAAATTGCACA
8624049 TTAAACCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 1 0.04
29 20 0.77
30 5 0.19
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.36
Consensus pattern (29 bp):
AAATCAAATTTTATGTATAAAATTGCACA
Found at i:8625447 original size:17 final size:17
Alignment explanation
Indices: 8625425--8625457 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8625415 ATATTTTGTA
8625425 TTTTTAATCAAATATAC
1 TTTTTAATCAAATATAC
8625442 TTTTTAATCAAATATA
1 TTTTTAATCAAATATA
8625458 TATATTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:8626301 original size:14 final size:12
Alignment explanation
Indices: 8626239--8626293 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 12
8626229 AAGTATTTAA
*
8626239 ATTAAAAAATAC
1 ATTAAATAATAC
* *
8626251 ATTAATTATATAT
1 ATTAAATA-ATAC
*
8626264 GTTAAATAATAC
1 ATTAAATAATAC
8626276 ATTAAA-AATAC
1 ATTAAATAATAC
8626287 ATTAAAT
1 ATTAAAT
8626294 TACATACAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
11 11 0.32
12 14 0.41
13 9 0.26
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.36
Consensus pattern (12 bp):
ATTAAATAATAC
Found at i:8626404 original size:6 final size:6
Alignment explanation
Indices: 8626393--8626421 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8626383 TTAGTGATTT
8626393 AATATA AATATA AATATA AATATA AATAT
1 AATATA AATATA AATATA AATATA AATAT
8626422 TATTTAACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AATATA
Found at i:8634119 original size:30 final size:32
Alignment explanation
Indices: 8634082--8634169 Score: 121
Period size: 30 Copynumber: 2.9 Consensus size: 32
8634072 CACGAGAATA
*
8634082 AGTTGCTCACACAAGCTGTCAATATATCAT-G
1 AGTTGCTCACACAAGCTGACAATATATCATAG
* *
8634113 -GTTGCTCACACAAGCTGGCACTATA--ATAG
1 AGTTGCTCACACAAGCTGACAATATATCATAG
8634142 AGTTGCTCACACAAGCTGACAATATATC
1 AGTTGCTCACACAAGCTGACAATATATC
8634170 GAGCTTACTC
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
28 2 0.04
29 1 0.02
30 46 0.94
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (32 bp):
AGTTGCTCACACAAGCTGACAATATATCATAG
Found at i:8637813 original size:30 final size:30
Alignment explanation
Indices: 8637777--8637837 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
8637767 TAATTTTCGG
8637777 TATTTGGACGATACTATGTAAAATAGTTTT
1 TATTTGGACGATACTATGTAAAATAGTTTT
8637807 TATTTGGACGATACTATGTAAAATAGTTTT
1 TATTTGGACGATACTATGTAAAATAGTTTT
8637837 T
1 T
8637838 CTTGTTTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (30 bp):
TATTTGGACGATACTATGTAAAATAGTTTT
Found at i:8638121 original size:38 final size:39
Alignment explanation
Indices: 8638047--8638121 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
8638037 CTAAAGGTCG
*
8638047 AGCATTAGCGGCGCTTTTTGGAAAACGCCGCTAAAAATA
1 AGCATTAGCAGCGCTTTTTGGAAAACGCCGCTAAAAATA
*
8638086 AGCATTAGCAGCG-TTTTTTGAAAAGCGCCGC-AAAAA
1 AGCATTAGCAGCGCTTTTTGGAAAA-CGCCGCTAAAAA
8638122 GCCTAAGCCC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 15 0.45
39 18 0.55
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (39 bp):
AGCATTAGCAGCGCTTTTTGGAAAACGCCGCTAAAAATA
Found at i:8638193 original size:41 final size:41
Alignment explanation
Indices: 8638144--8638379 Score: 343
Period size: 41 Copynumber: 5.8 Consensus size: 41
8638134 CTCTGAGGCA
8638144 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
*
8638185 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGATCTGGCC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
* * * *
8638226 TTTAGCGGCATTTTTGAAGAAGCGCCGGTAATGATCGGGCC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
*
8638267 TTTAGCGGCGTTTTTGAA-AATGCACCGCTAATGCTC-GAGCC
1 TTTAGCGGCGTTTTTGAAGAA-GCGCCGCTAATGCTCTG-GCC
* *
8638308 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATACTCAGGCC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
* *
8638349 TTTAGCGGTGTTTTTGAA-AAGCGCCACTAAT
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAAT
8638380 AATAATAAAA
Statistics
Matches: 179, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
40 15 0.08
41 161 0.90
42 3 0.02
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
Found at i:8639056 original size:28 final size:28
Alignment explanation
Indices: 8639016--8639072 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
8639006 GGGTTATAGG
*
8639016 AAAATATTATAAATATTAAAATTCGAAT
1 AAAATATTATAAATATTAAAATTCCAAT
*
8639044 AAAAT-TTATTAAATATTGAAATTCCAAT
1 AAAATATTA-TAAATATTAAAATTCCAAT
8639072 A
1 A
8639073 CTAGCTAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 23 0.88
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (28 bp):
AAAATATTATAAATATTAAAATTCCAAT
Found at i:8639384 original size:98 final size:98
Alignment explanation
Indices: 8639215--8639413 Score: 398
Period size: 98 Copynumber: 2.0 Consensus size: 98
8639205 AATTTATTTG
8639215 AATAGCCCAATTGCAAAAGAAAGCAAATATCTTGTATTTGCAATCATTAATTGAATTACGTTGGG
1 AATAGCCCAATTGCAAAAGAAAGCAAATATCTTGTATTTGCAATCATTAATTGAATTACGTTGGG
8639280 TACTTCGTTAGAGTGGGTGAGTGGTGAGTGGCA
66 TACTTCGTTAGAGTGGGTGAGTGGTGAGTGGCA
8639313 AATAGCCCAATTGCAAAAGAAAGCAAATATCTTGTATTTGCAATCATTAATTGAATTACGTTGGG
1 AATAGCCCAATTGCAAAAGAAAGCAAATATCTTGTATTTGCAATCATTAATTGAATTACGTTGGG
8639378 TACTTCGTTAGAGTGGGTGAGTGGTGAGTGGCA
66 TACTTCGTTAGAGTGGGTGAGTGGTGAGTGGCA
8639411 AAT
1 AAT
8639414 GTAAAATGGA
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 101 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (98 bp):
AATAGCCCAATTGCAAAAGAAAGCAAATATCTTGTATTTGCAATCATTAATTGAATTACGTTGGG
TACTTCGTTAGAGTGGGTGAGTGGTGAGTGGCA
Found at i:8641923 original size:86 final size:87
Alignment explanation
Indices: 8641809--8641983 Score: 217
Period size: 86 Copynumber: 2.0 Consensus size: 87
8641799 TCCTCTTATT
* * * * *
8641809 TTATAAAAATTGAAAATTTAGTCTGGTTTTTGGTGAATATATGA-ACTTGTATTGTTAATTTGTG
1 TTATAAAAATTGAAAAGTTAGTCCGGTTTTTGGTGAATACATGATACATGAATTGTTAATTTGTG
* *
8641873 TTAATTTGTTGCATTTAAAATG
66 CTAATTTGTTGCATGTAAAATG
* * * * *
8641895 TTATAAAAATTGACAAGTTGGTCCGGTTTTTGGTTAATACATTATACATGAATTGTTAATTTTTG
1 TTATAAAAATTGAAAAGTTAGTCCGGTTTTTGGTGAATACATGATACATGAATTGTTAATTTGTG
* *
8641960 CTAATTTTTTGCATGTAAATTG
66 CTAATTTGTTGCATGTAAAATG
8641982 TT
1 TT
8641984 GAAATGATGA
Statistics
Matches: 74, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
86 37 0.50
87 37 0.50
ACGTcount: A:0.30, C:0.06, G:0.17, T:0.47
Consensus pattern (87 bp):
TTATAAAAATTGAAAAGTTAGTCCGGTTTTTGGTGAATACATGATACATGAATTGTTAATTTGTG
CTAATTTGTTGCATGTAAAATG
Found at i:8642188 original size:86 final size:86
Alignment explanation
Indices: 8642075--8642325 Score: 290
Period size: 86 Copynumber: 2.9 Consensus size: 86
8642065 TAAAAATTGA
* * *
8642075 AAATTGAAAATTTAGTCTGCTTGTTGGTAAATACATGAACTTGAACCATTTATTTTTGCTAATTT
1 AAATTGAAAAATTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAATTT
* *
8642140 GTTGCATATAAGTTGTTATA-
66 GTTGCATATAAATCGTTATAG
* *
8642160 AATATTGAAAAATTAGTCTGATTTTTGGTAAATACATGAACTTGAACCATTGATTTTTGTTAATT
1 AA-ATTGAAAAATTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAATT
8642225 TGTTGCATATAAATCGTTATAG
65 TGTTGCATATAAATCGTTATAG
* * * * ** * **
8642247 AAATTGAATATTTAGCCCT-AATGCCGGTAAATATATGAACTATGAATAATTGATTTTTTGCTAA
1 AAATTGAAAAATTAG-TCTGATTGTTGGTAAATACATGAACT-TGAACCATTGA-TTTTTGCTAA
* *
8642311 TTTGTTTCACATAAA
63 TTTGTTGCATATAAA
8642326 CTGTTGTAAG
Statistics
Matches: 141, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
85 2 0.01
86 104 0.74
87 13 0.09
88 22 0.16
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (86 bp):
AAATTGAAAAATTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAATTT
GTTGCATATAAATCGTTATAG
Found at i:8642381 original size:40 final size:40
Alignment explanation
Indices: 8642337--8642421 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
8642327 TGTTGTAAGA
* * *
8642337 TTGATTTGTGTTAATTTCTTGCATA-TAAATTATTGAAATG
1 TTGATTTGTGATAATTCCTTACATATTAAA-TATTGAAATG
* *
8642377 TTGATTTTTGATAATTCCTTACATATTAAATATTGAAGTG
1 TTGATTTGTGATAATTCCTTACATATTAAATATTGAAATG
8642417 TTGAT
1 TTGAT
8642422 GTCCAAGCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 35 0.90
41 4 0.10
ACGTcount: A:0.31, C:0.06, G:0.14, T:0.49
Consensus pattern (40 bp):
TTGATTTGTGATAATTCCTTACATATTAAATATTGAAATG
Found at i:8644605 original size:43 final size:43
Alignment explanation
Indices: 8644539--8644639 Score: 148
Period size: 43 Copynumber: 2.3 Consensus size: 43
8644529 TTTAGTGGCT
* *
8644539 AAAGTGTCGCTAAAGGTCTTGGTCTTTAGCGACGTTTGTGGGA
1 AAAGCGTCGCTAAAGGTCTTGGTCTTTAGCGACGTTTGTGAGA
* *
8644582 AAAGCGTCGCTAATGGTCTTGGTCTTTAGCGGCGTTTGTGAGA
1 AAAGCGTCGCTAAAGGTCTTGGTCTTTAGCGACGTTTGTGAGA
**
8644625 AAAGCACCGCTAAAG
1 AAAGCGTCGCTAAAG
8644640 TTAGCGACGC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.29
Consensus pattern (43 bp):
AAAGCGTCGCTAAAGGTCTTGGTCTTTAGCGACGTTTGTGAGA
Found at i:8644730 original size:22 final size:22
Alignment explanation
Indices: 8644687--8644730 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8644677 CTCGGGTGCT
**
8644687 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAACCTA
8644709 AAAAAGCGCCGCTAAAAACCTA
1 AAAAAGCGCCGCTAAAAACCTA
8644731 TTTTGGTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.27, G:0.18, T:0.09
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAACCTA
Found at i:8645594 original size:6 final size:6
Alignment explanation
Indices: 8645583--8645624 Score: 84
Period size: 6 Copynumber: 7.0 Consensus size: 6
8645573 TTGTGGAGCA
8645583 GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG
1 GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG
8645625 CCAGCTCCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (6 bp):
GCTCAG
Found at i:8647710 original size:19 final size:18
Alignment explanation
Indices: 8647677--8647712 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
8647667 TGTCTTTCGT
*
8647677 ATTTGGGTTAGTTAGTTA
1 ATTTGGGTGAGTTAGTTA
8647695 ATTTGAGGTGAGTTAGTT
1 ATTTG-GGTGAGTTAGTT
8647713 GTATACTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (18 bp):
ATTTGGGTGAGTTAGTTA
Done.