Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 32 of 230
Found at i:8648143 original size:20 final size:19
Alignment explanation
Indices: 8648122--8648162 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8648112 GCTTAGTTAT
8648122 TTTCT-TTTTAATTTAATTA
1 TTTCTGTTTT-ATTTAATTA
8648141 TTTCTGTTTTATTTAATT-
1 TTTCTGTTTTATTTAATTA
8648159 TTTC
1 TTTC
8648163 ATATAATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 4 0.19
19 13 0.62
20 4 0.19
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTCTGTTTTATTTAATTA
Found at i:8651300 original size:47 final size:47
Alignment explanation
Indices: 8651231--8651325 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
8651221 TGGGTTGTTT
8651231 ATATATAGGGAGTGTAGGAGAGTCATAAATTTGTGGTAAACTATTAA
1 ATATATAGGGAGTGTAGGAGAGTCATAAATTTGTGGTAAACTATTAA
8651278 ATATATAGGGAGTGTAGGAGAGTCATAAATTTGTGGTAAACTATTAA
1 ATATATAGGGAGTGTAGGAGAGTCATAAATTTGTGGTAAACTATTAA
8651325 A
1 A
8651326 ACAAGCTTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.32
Consensus pattern (47 bp):
ATATATAGGGAGTGTAGGAGAGTCATAAATTTGTGGTAAACTATTAA
Found at i:8652333 original size:103 final size:104
Alignment explanation
Indices: 8652137--8652422 Score: 407
Period size: 103 Copynumber: 2.7 Consensus size: 104
8652127 TTTTTTTTTT
* * *
8652137 GTGGTGGCCTGCCAGTGGTC-AGCACCACCTTTTTCCCAATTTTTTTTTTTACTTTTGATCTGTC
1 GTGGTGGCCTGCCAATGGTCGA-CACCACCTTTTT--CAAATTTTTTTTTTACTTTTGGTCTGTC
* *
8652201 AATGGCCGGCACCAGTATACGAAAAAAGTAAAAAAAAAATTA
63 AATGGCCGGCACCAATATACGAAAAAAGTAAAAAAAAATTTA
* ** * *
8652243 GTGGTGGCCTGCCAATGGTCGACACCACATTTTT-TTATTTTTTTTTTACATTTGGTCTATCAAT
1 GTGGTGGCCTGCCAATGGTCGACACCACCTTTTTCAAATTTTTTTTTTACTTTTGGTCTGTCAAT
*
8652307 GGCCGGTACCAATATACGAAAAAAGT-AAAAAAAATTTA
66 GGCCGGCACCAATATACGAAAAAAGTAAAAAAAAATTTA
*
8652345 GTGGTGGCCTGCCAATGGTCGGCACCACCTTTTTCCAAATTTTTTTTTTACTTTTGGTCTGTCAA
1 GTGGTGGCCTGCCAATGGTCGACACCACCTTTTT-CAAATTTTTTTTTTACTTTTGGTCTGTCAA
8652410 TGGCCGGCACCAA
65 TGGCCGGCACCAA
8652423 CTTTACAATA
Statistics
Matches: 159, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
102 43 0.27
103 48 0.30
104 37 0.23
106 30 0.19
107 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (104 bp):
GTGGTGGCCTGCCAATGGTCGACACCACCTTTTTCAAATTTTTTTTTTACTTTTGGTCTGTCAAT
GGCCGGCACCAATATACGAAAAAAGTAAAAAAAAATTTA
Found at i:8652422 original size:104 final size:105
Alignment explanation
Indices: 8651855--8652422 Score: 547
Period size: 113 Copynumber: 5.2 Consensus size: 105
8651845 TTTTCGGGTA
* ** *
8651855 TTGGTCTGTAAATGGCTAGCACCAGA-ATACG-AAAAAGTAAAAAAAAAAATTTGGTGGTGGCCT
1 TTGGTCTGTCAATGGCCGGCACCA-ATATACGAAAAAAGT-AAAAAAAAAA-TTAGTGGTGGCCT
* * *
8651918 GCCAATGG-CTGGTACCACCTTTTTCAAAATATTTTCTTTTACTT
63 GCCAATGGTC-GGCACCACCTTTTTCCAAAT-TTTTTTTTTACTT
* ** * *
8651962 TT-TTCGTGTCAATGGTAGGCACCAATATACGAAAAAAGTAAAAAAAATATTTTTTTTGTGGTGG
1 TTGGTC-TGTCAATGGCCGGCACCAATATACGAAAAAAGTAAAAAAAA-A----ATTAGTGGTGG
* * ***
8652026 TCTGCCAATGGCCGGCACCACCTTTATGGGATATAGTTTTTTTTTTTTACTT
60 CCTGCCAATGGTCGGCACCACCTTT-TTCCA-A-A---TTTTTTTTTTACTT
* * * * *
8652078 TTGGTCTGTCAATTGCCGACACCAGTATACGAAAAAAGTAAAAAAGAAATTTTTTTTTTGTGGTG
1 TTGGTCTGTCAATGGCCGGCACCAATATACGAAAAAAGTAAAAAA-AAA------ATTAGTGGTG
* * *
8652143 GCCTGCCAGTGGTCAGCACCACCTTTTTCCCAATTTTTTTTTTTACTT
59 GCCTGCCAATGGTCGGCACCACCTTTTT-CCAAATTTTTTTTTTACTT
* *
8652191 TTGATCTGTCAATGGCCGGCACCAGTATACGAAAAAAGTAAAAAAAAAATTAGTGGTGGCCTGCC
1 TTGGTCTGTCAATGGCCGGCACCAATATACGAAAAAAGTAAAAAAAAAATTAGTGGTGGCCTGCC
* * ** *
8652256 AATGGTCGACACCACATTTTT--TTATTTTTTTTTTACAT
66 AATGGTCGGCACCACCTTTTTCCAAATTTTTTTTTTACTT
* * *
8652294 TTGGTCTATCAATGGCCGGTACCAATATACGAAAAAAGT-AAAAAAAATTTAGTGGTGGCCTGCC
1 TTGGTCTGTCAATGGCCGGCACCAATATACGAAAAAAGTAAAAAAAAAATTAGTGGTGGCCTGCC
8652358 AATGGTCGGCACCACCTTTTTCCAAATTTTTTTTTTACTT
66 AATGGTCGGCACCACCTTTTTCCAAATTTTTTTTTTACTT
8652398 TTGGTCTGTCAATGGCCGGCACCAA
1 TTGGTCTGTCAATGGCCGGCACCAA
8652423 CTTTACAATA
Statistics
Matches: 387, Mismatches: 52, Indels: 47
0.80 0.11 0.10
Matches are distributed among these distances:
102 43 0.11
103 48 0.12
104 37 0.10
106 35 0.09
107 29 0.07
108 8 0.02
111 30 0.08
112 6 0.02
113 57 0.15
114 1 0.00
116 49 0.13
117 7 0.02
118 37 0.10
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (105 bp):
TTGGTCTGTCAATGGCCGGCACCAATATACGAAAAAAGTAAAAAAAAAATTAGTGGTGGCCTGCC
AATGGTCGGCACCACCTTTTTCCAAATTTTTTTTTTACTT
Found at i:8668350 original size:19 final size:19
Alignment explanation
Indices: 8668298--8668381 Score: 66
Period size: 19 Copynumber: 4.4 Consensus size: 19
8668288 CTTATTAGGT
*
8668298 TTTTTAT-AATTTTATA-A
1 TTTTTATGATTTTTATACA
*
8668315 TTTTTATGATATGTTATA-A
1 TTTTTATGAT-TTTTATACA
**
8668334 TTTTTATGACTTTTTATATGT
1 TTTTTATGA-TTTTTATA-CA
*
8668355 TTTTTAAGAATTTTTATACA
1 TTTTTATG-ATTTTTATACA
8668375 TTTTTAT
1 TTTTTAT
8668382 AAAATTTTAA
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
17 7 0.13
18 1 0.02
19 22 0.42
20 7 0.13
21 15 0.28
22 1 0.02
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (19 bp):
TTTTTATGATTTTTATACA
Found at i:8668378 original size:21 final size:21
Alignment explanation
Indices: 8668334--8668389 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
8668324 TATGTTATAA
* * **
8668334 TTTTTATGACTTTTTATATGT
1 TTTTTAAGAATTTTTATACAT
8668355 TTTTTAAGAATTTTTATACAT
1 TTTTTAAGAATTTTTATACAT
8668376 TTTTATAA-AATTTT
1 TTTT-TAAGAATTTT
8668390 AAATATGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 27 0.90
22 3 0.10
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.62
Consensus pattern (21 bp):
TTTTTAAGAATTTTTATACAT
Found at i:8668400 original size:21 final size:21
Alignment explanation
Indices: 8668349--8668410 Score: 56
Period size: 20 Copynumber: 3.0 Consensus size: 21
8668339 ATGACTTTTT
* *
8668349 ATATGTTTTTTAAGAATTTTTAT
1 ATATGTTTTATAA-AA-TTTTAA
*
8668372 ACAT-TTTTATAAAATTTTAA
1 ATATGTTTTATAAAATTTTAA
*
8668392 ATATGTTTTAT-TAATTTTA
1 ATATGTTTTATAAAATTTTA
8668411 TAAAAAATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
20 15 0.45
21 8 0.24
22 7 0.21
23 3 0.09
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (21 bp):
ATATGTTTTATAAAATTTTAA
Found at i:8668535 original size:19 final size:18
Alignment explanation
Indices: 8668513--8668562 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
8668503 TTTTATTATA
* *
8668513 TTTATGAGGTTTTATATTT
1 TTTATGAGATTTT-TAATT
*
8668532 TTTATGATATTTTTAATT
1 TTTATGAGATTTTTAATT
8668550 TTTATGA-ATTTTT
1 TTTATGAGATTTTT
8668563 TATGACAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 6 0.21
18 11 0.39
19 11 0.39
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (18 bp):
TTTATGAGATTTTTAATT
Found at i:8670420 original size:169 final size:169
Alignment explanation
Indices: 8670122--8670631 Score: 774
Period size: 169 Copynumber: 3.0 Consensus size: 169
8670112 CTAGGTTAGA
* * ** *
8670122 TCACACGGCTAGCCACATGGGTATGTGGGCTACCTGTATGGACTACACGACCCCATACACGTCCA
1 TCACACGGCCAGCCACATGGGCATGTGGGCCGCCTGTGTGGACTACACGACCCCATACACGTCCA
* * *
8670187 TGACACCCCTAAAACCCTAGCATGTTCGACTTTTACACTGCCTAAGACCTCCAACATGGCCTTCC
66 TGACACCCCTAAAACCCTAGCATGTTCGACTTTTACACGGCCTAGGACCTTCAACATGGCCTTCC
*
8670252 ACACAACTGTGTCTTTCCTGTAGGTTAAATTTTCGAATG
131 ACACGACTGTGTCTTTCCTGTAGGTTAAATTTTCGAATG
* *
8670291 TCACACGGCCAGCCACATGGGCATGTGGGCCGCTTGTGTGGACTACACAACCCCATACACGTCCA
1 TCACACGGCCAGCCACATGGGCATGTGGGCCGCCTGTGTGGACTACACGACCCCATACACGTCCA
*
8670356 TGACACCCCTAAAACCCTAGCATGTTCGACTTTTACACGGCCTAGGACCTTCAACATAGCCTTCC
66 TGACACCCCTAAAACCCTAGCATGTTCGACTTTTACACGGCCTAGGACCTTCAACATGGCCTTCC
8670421 ACACGACTGTGTCTTTCCTGTAGGTTAAATTTTCGAATG
131 ACACGACTGTGTCTTTCCTGTAGGTTAAATTTTCGAATG
*
8670460 TCACACGGCCAGCCACATAGGCATGTGGGCCGCCTGTGTGGACTACACGA-CCCATACACGTCCA
1 TCACACGGCCAGCCACATGGGCATGTGGGCCGCCTGTGTGGACTACACGACCCCATACACGTCCA
* * * * * *
8670524 TGACACCCCTAAAACCTTAGCATGCTCGACTTTCACACGGCCTAGGACCCTC-ACACGGCCTCCC
66 TGACACCCCTAAAACCCTAGCATGTTCGACTTTTACACGGCCTAGGACCTTCAACATGGCCTTCC
* * * * *
8670588 ACACGA-TCATGTCTTCCCTATAGGTTGAATTTTCAAATG
131 ACACGACT-GTGTCTTTCCTGTAGGTTAAATTTTCGAATG
8670627 TCACA
1 TCACA
8670632 TGGTCATAGT
Statistics
Matches: 313, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
166 1 0.00
167 46 0.15
168 62 0.20
169 204 0.65
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (169 bp):
TCACACGGCCAGCCACATGGGCATGTGGGCCGCCTGTGTGGACTACACGACCCCATACACGTCCA
TGACACCCCTAAAACCCTAGCATGTTCGACTTTTACACGGCCTAGGACCTTCAACATGGCCTTCC
ACACGACTGTGTCTTTCCTGTAGGTTAAATTTTCGAATG
Found at i:8672009 original size:92 final size:91
Alignment explanation
Indices: 8671849--8672074 Score: 295
Period size: 92 Copynumber: 2.5 Consensus size: 91
8671839 TAAGGGTGCT
* * * * * * *
8671849 ACCCTCAAACATTTT-CAAAAAAAAGCAATTAAGACCCTACTTTTTTTTGTACTCATTTGGGTAT
1 ACCCTCAAACCTTTTAAAAAAAAAAGCAATTAAGCCCCTACCTTTTTTTGAACTCAATTGGGTAC
*
8671913 TTGAACTTTTAAAATGCATCAAAAA-
66 TTGAACTTTCAAAATGCATCAAAAAG
* *
8671938 AGCCCTCAAACCTTTTAAAAAAAAAAGCAATGAAGCCCCTACCTTTGTTTTGAACTCAATTGTGT
1 A-CCCTCAAACCTTTTAAAAAAAAAAGCAATTAAGCCCCTACCTTT-TTTTGAACTCAATTGGGT
8672003 ACTTGAACTTTCAAAATGCATCAAAAAG
64 ACTTGAACTTTCAAAATGCATCAAAAAG
8672031 ACCCTCAAA-C--TTAAAAAAAAAA-CAATTAAGCCCCT-CCTTTTTTT
1 ACCCTCAAACCTTTTAAAAAAAAAAGCAATTAAGCCCCTACCTTTTTTT
8672075 AAAAAAAAAA
Statistics
Matches: 122, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
86 4 0.03
87 5 0.04
88 12 0.10
89 13 0.11
90 13 0.11
91 26 0.21
92 48 0.39
93 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (91 bp):
ACCCTCAAACCTTTTAAAAAAAAAAGCAATTAAGCCCCTACCTTTTTTTGAACTCAATTGGGTAC
TTGAACTTTCAAAATGCATCAAAAAG
Found at i:8678557 original size:15 final size:14
Alignment explanation
Indices: 8678537--8678572 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
8678527 AATTGATAAA
8678537 TTAAAAAATTAAGTG
1 TTAAAAAA-TAAGTG
8678552 TTAAAAAATAAGTG
1 TTAAAAAATAAGTG
*
8678566 TTGAAAA
1 TTAAAAA
8678573 TTGAAGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.31
Consensus pattern (14 bp):
TTAAAAAATAAGTG
Found at i:8678563 original size:14 final size:15
Alignment explanation
Indices: 8678537--8678572 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
8678527 AATTGATAAA
8678537 TTAAAAAATTAAGTG
1 TTAAAAAATTAAGTG
8678552 TTAAAAAA-TAAGTG
1 TTAAAAAATTAAGTG
8678566 TTGAAAA
1 TT-AAAA
8678573 TTGAAGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.31
Consensus pattern (15 bp):
TTAAAAAATTAAGTG
Found at i:8678579 original size:15 final size:14
Alignment explanation
Indices: 8678541--8678585 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
8678531 GATAAATTAA
*
8678541 AAAATTAAGTGTTA
1 AAAATTAAGTGTTG
*
8678555 AAAAATAAGTGTTG
1 AAAATTAAGTGTTG
*
8678569 AAAATTGAAGTATTG
1 AAAATT-AAGTGTTG
8678584 AA
1 AA
8678586 TTCAAGTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
14 17 0.65
15 9 0.35
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.31
Consensus pattern (14 bp):
AAAATTAAGTGTTG
Found at i:8680291 original size:22 final size:22
Alignment explanation
Indices: 8680240--8680291 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
8680230 TTTTATAGTT
*
8680240 ATAATTAAATATTTTTTATAACA
1 ATAA-TAAATATTATTTATAACA
* *
8680263 ATGATAAATATTATTT-TCACAA
1 ATAATAAATATTATTTATAAC-A
8680285 ATAATAA
1 ATAATAA
8680292 CATTATACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATAAATATTATTTATAACA
Found at i:8682009 original size:28 final size:29
Alignment explanation
Indices: 8681956--8682013 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
8681946 TACCAAACAT
*
8681956 AAAAAGTAGCATACATTAGTTTTACATATA
1 AAAAAGTAGCATACATTAGTATTACA-ATA
*
8681986 AAAAAGTAGTATA-ATTA-TATTACAATA
1 AAAAAGTAGCATACATTAGTATTACAATA
8682013 A
1 A
8682014 TATTTCTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 4 0.15
28 6 0.23
29 4 0.15
30 12 0.46
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.33
Consensus pattern (29 bp):
AAAAAGTAGCATACATTAGTATTACAATA
Found at i:8683641 original size:64 final size:64
Alignment explanation
Indices: 8683540--8683686 Score: 285
Period size: 64 Copynumber: 2.3 Consensus size: 64
8683530 ATGTTATATT
8683540 AGTTCGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
1 AGTTCGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
*
8683604 AGTTCGAATCCTTTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
1 AGTTCGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
8683668 AGTTCGAATCCTCTAATTT
1 AGTTCGAATCCTCTAATTT
8683687 AAATACTATA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 81 1.00
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (64 bp):
AGTTCGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
Found at i:8685025 original size:378 final size:379
Alignment explanation
Indices: 8684297--8685062 Score: 1464
Period size: 378 Copynumber: 2.0 Consensus size: 379
8684287 AGTTATAATT
8684297 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAGATGATTGGGGAAATTAGGGTCAAAATTGAGGA
1 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAGATGATTGGGGAAATTAGGGTCAAAATTGAGGA
8684362 AAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAAC
66 AAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAAC
8684427 AGTTTTTTCCTTTGAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATT
131 AGTTTTTTCCTTTGAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATT
*
8684492 TAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGAATCTTTTCATTTGATTT
196 TAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGCTAACGAATCTCTGAATCTTTTCATTTGATTT
8684557 AATTTGTGCTTTCTTCGCTTTTTTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCA
261 AATTTGTGCTTTCTTCGCTTTTTTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCA
*
8684622 CACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTTTCATTATA
326 CACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTCTCATTATA
*
8684676 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAGATGATTGGGGAAATTTGGGTCAAAATTGAGGA
1 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAGATGATTGGGGAAATTAGGGTCAAAATTGAGGA
8684741 AAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAAC
66 AAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAAC
8684806 AGTTTTTTCCTTTGAAATGAACGACCGAAAGAGTGAGCTC-TTTTTTTCCTTCTTGTTGTTGATT
131 AGTTTTTTCCTTTGAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATT
8684870 TAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGCTAACGAATCTCTGAATCTTTTCATTTGATTT
196 TAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGCTAACGAATCTCTGAATCTTTTCATTTGATTT
*
8684935 AATTTG-GTCTTTCTTCTCTTTTTTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTC
261 AATTTGTG-CTTTCTTCGCTTTTTTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTC
*
8684999 ACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTCTCGTTATA
325 ACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTCTCATTATA
8685054 ATTTATTGC
1 ATTTATTGC
8685063 TATTGAATGC
Statistics
Matches: 381, Mismatches: 5, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
377 1 0.00
378 211 0.55
379 169 0.44
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.42
Consensus pattern (379 bp):
ATTTATTGCATTTGTAAGTTTCTTAGAAATAAGATGATTGGGGAAATTAGGGTCAAAATTGAGGA
AAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAAC
AGTTTTTTCCTTTGAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATT
TAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGCTAACGAATCTCTGAATCTTTTCATTTGATTT
AATTTGTGCTTTCTTCGCTTTTTTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCA
CACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTCTCATTATA
Found at i:8690411 original size:3 final size:3
Alignment explanation
Indices: 8690403--8690432 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8690393 CTTTAGAGAA
8690403 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8690433 CAAGTGTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8703514 original size:22 final size:22
Alignment explanation
Indices: 8703454--8703517 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 22
8703444 GTACTATACA
*
8703454 GAGAGCACAAATGAGCTAATCG
1 GAGAGCACAAATGTGCTAATCG
*
8703476 GAGAGCACAAATATGCTAATCG
1 GAGAGCACAAATGTGCTAATCG
* *
8703498 GAGAGCACTAACGTGCTAAT
1 GAGAGCACAAATGTGCTAAT
8703518 AATCAGAGAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.17
Consensus pattern (22 bp):
GAGAGCACAAATGTGCTAATCG
Found at i:8703526 original size:25 final size:25
Alignment explanation
Indices: 8703492--8703553 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
8703482 ACAAATATGC
*
8703492 TAATCGGAGAGCACTAACGTGCTAA
1 TAATCAGAGAGCACTAACGTGCTAA
* *
8703517 TAATCAGAGAGCACTGATGTGCTAA
1 TAATCAGAGAGCACTAACGTGCTAA
*
8703542 TAATCAAAGAGC
1 TAATCAGAGAGC
8703554 GCGCTAAGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.21
Consensus pattern (25 bp):
TAATCAGAGAGCACTAACGTGCTAA
Found at i:8704152 original size:49 final size:46
Alignment explanation
Indices: 8704099--8704203 Score: 113
Period size: 47 Copynumber: 2.2 Consensus size: 46
8704089 TAGTATAACT
*
8704099 ATGGTCTTCCACAT-AATCACATATCACACACCAAAGCCATAGCCCAACC
1 ATGGTCTT--ACATGAAGCACATAT--CACACCAAAGCCATAGCCCAACC
* * * *
8704148 ATGGTCTTACATGGAAGCACATATCACACCGATGCCATAGCCCAGCT
1 ATGGTCTTACAT-GAAGCACATATCACACCAAAGCCATAGCCCAACC
8704195 ATGGTCTTA
1 ATGGTCTTA
8704204 TACGGAAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
47 32 0.65
49 17 0.35
ACGTcount: A:0.32, C:0.31, G:0.14, T:0.22
Consensus pattern (46 bp):
ATGGTCTTACATGAAGCACATATCACACCAAAGCCATAGCCCAACC
Found at i:8704199 original size:47 final size:48
Alignment explanation
Indices: 8704116--8704223 Score: 128
Period size: 47 Copynumber: 2.2 Consensus size: 48
8704106 TCCACATAAT
*
8704116 CACATATCACACACCAAAGCCATAGCCCAACCATGGTCTTACATGG-AAG
1 CACATAT--CACACCAAAGCCATAGCCCAACCATGGTCTTACACGGAAAG
* * * * * *
8704165 CACATATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAAT
1 CACATATCACACCAAAGCCATAGCCCAACCATGGTCTTACACGGAAAG
8704213 CACATATCACA
1 CACATATCACA
8704224 TATTGCCATG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
47 31 0.61
48 13 0.25
49 7 0.14
ACGTcount: A:0.35, C:0.31, G:0.14, T:0.19
Consensus pattern (48 bp):
CACATATCACACCAAAGCCATAGCCCAACCATGGTCTTACACGGAAAG
Found at i:8704231 original size:47 final size:46
Alignment explanation
Indices: 8704134--8704249 Score: 117
Period size: 47 Copynumber: 2.5 Consensus size: 46
8704124 ACACACCAAA
*
8704134 GCCATAGCCCAACCATGGTCTTACATGGAAGCACATATCACACCGAT
1 GCCATAGCCCAACCATGGTCTTACACGGAAGCACATATCACA-CGAT
* * * * *
8704181 GCCATAGCCCAGCTATGGTCTTATACGGAAATCACATATCACA-TATT
1 GCCATAGCCCAACCATGGTCTTACACGG-AAGCACATATCACACGA-T
* **
8704228 GCCATGGTTCAACCATGGTCTT
1 GCCATAGCCCAACCATGGTCTT
8704250 TTTCGTCAAT
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
46 1 0.02
47 42 0.75
48 13 0.23
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (46 bp):
GCCATAGCCCAACCATGGTCTTACACGGAAGCACATATCACACGAT
Found at i:8706803 original size:22 final size:22
Alignment explanation
Indices: 8706778--8706820 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8706768 TTACTTCAAA
8706778 TATGAATAGCCAAAAAAATTAG
1 TATGAATAGCCAAAAAAATTAG
* *
8706800 TATGGATAGCCAAAAGAATTA
1 TATGAATAGCCAAAAAAATTA
8706821 TCTTCACCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.51, C:0.09, G:0.16, T:0.23
Consensus pattern (22 bp):
TATGAATAGCCAAAAAAATTAG
Found at i:8711551 original size:18 final size:19
Alignment explanation
Indices: 8711530--8711577 Score: 53
Period size: 22 Copynumber: 2.4 Consensus size: 19
8711520 AATATGTATC
8711530 ATAATATTTT-AATTAATT
1 ATAATATTTTAAATTAATT
8711548 ATAAAATTATTTTAAATTAATT
1 AT--AA-TATTTTAAATTAATT
*
8711570 ATTATATT
1 ATAATATT
8711578 AAATTATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 2 0.08
19 4 0.16
20 3 0.12
21 6 0.24
22 10 0.40
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATAATATTTTAAATTAATT
Found at i:8761177 original size:16 final size:16
Alignment explanation
Indices: 8761148--8761181 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8761138 TTTGAGTGTG
*
8761148 ATTGATAGGAAAGAAA
1 ATTGAAAGGAAAGAAA
*
8761164 ATTGAAAGGCAAGAAA
1 ATTGAAAGGAAAGAAA
8761180 AT
1 AT
8761182 AAGAAATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.03, G:0.24, T:0.18
Consensus pattern (16 bp):
ATTGAAAGGAAAGAAA
Found at i:8775157 original size:13 final size:13
Alignment explanation
Indices: 8775139--8775170 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
8775129 TATGCTTTGA
8775139 TATAATTGCTATG
1 TATAATTGCTATG
8775152 TATAATTGCTATG
1 TATAATTGCTATG
8775165 TATAAT
1 TATAAT
8775171 GCACTGATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.47
Consensus pattern (13 bp):
TATAATTGCTATG
Found at i:8775491 original size:25 final size:25
Alignment explanation
Indices: 8775463--8775532 Score: 77
Period size: 27 Copynumber: 2.7 Consensus size: 25
8775453 GATATACGAC
*
8775463 TCTTCAGAGTTTCCCGATTAAAGGA
1 TCTTCAGAGCTTCCCGATTAAAGGA
* * *
8775488 TCTTTCATGAGCTTCCCGATTGATGGC
1 TC-TTCA-GAGCTTCCCGATTAAAGGA
*
8775515 TCTCCAGAGCTTCCCGAT
1 TCTTCAGAGCTTCCCGAT
8775533 ATTGGCTCGC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
25 14 0.37
26 7 0.18
27 17 0.45
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (25 bp):
TCTTCAGAGCTTCCCGATTAAAGGA
Found at i:8775548 original size:24 final size:24
Alignment explanation
Indices: 8775495--8775575 Score: 58
Period size: 25 Copynumber: 3.3 Consensus size: 24
8775485 GGATCTTTCA
*
8775495 TGAGCTTCCCGATTGATGGCTCTCC
1 TGAGCTTCCCGATT-ATGGCTCGCC
* *
8775520 AGAGCTTCCCGA-TATTGGCTCGCT
1 TGAGCTTCCCGATTA-TGGCTCGCC
* *
8775544 TGAGCCTTCTCG-TTAATGGCTCTCC
1 TGAG-CTTCCCGATT-ATGGCTCGCC
*
8775569 AGAGCTT
1 TGAGCTT
8775576 TCCGTTACAT
Statistics
Matches: 44, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
23 1 0.02
24 14 0.32
25 28 0.64
26 1 0.02
ACGTcount: A:0.15, C:0.30, G:0.23, T:0.32
Consensus pattern (24 bp):
TGAGCTTCCCGATTATGGCTCGCC
Found at i:8775563 original size:25 final size:26
Alignment explanation
Indices: 8775535--8775614 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 26
8775525 TTCCCGATAT
* *
8775535 TGGCTCGCTTGAGCCTTCTCGTTA-A
1 TGGCTCACATGAGCCTTCTCGTTACA
* *
8775560 TGGCTCTCCA-GAGCTTTC-CGTTACA
1 TGGCTC-ACATGAGCCTTCTCGTTACA
* *
8775585 TGACTCACATGAG-CTTCTCGTTATA
1 TGGCTCACATGAGCCTTCTCGTTACA
8775610 TGGCT
1 TGGCT
8775615 ATGCTCACAT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
24 10 0.23
25 32 0.74
26 1 0.02
ACGTcount: A:0.16, C:0.28, G:0.21, T:0.35
Consensus pattern (26 bp):
TGGCTCACATGAGCCTTCTCGTTACA
Found at i:8775602 original size:49 final size:48
Alignment explanation
Indices: 8775493--8775614 Score: 136
Period size: 49 Copynumber: 2.5 Consensus size: 48
8775483 AAGGATCTTT
* * * * *
8775493 CATGAGCTTCCCGATTGATGGCTCTCCAGAGCTTCCCGATATTGGCTCG
1 CATGAGCTTCTCG-TTAATGGCTCTCCAGAGCTTCCCGATAATGACTCA
* * *
8775542 CTTGAGCCTTCTCGTTAATGGCTCTCCAGAGCTTTCCGTTACATGACTCA
1 CATGAG-CTTCTCGTTAATGGCTCTCCAGAGCTTCCCGATA-ATGACTCA
8775592 CATGAGCTTCTCGTTATATGGCT
1 CATGAGCTTCTCGTTA-ATGGCT
8775615 ATGCTCACAT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
49 39 0.64
50 22 0.36
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (48 bp):
CATGAGCTTCTCGTTAATGGCTCTCCAGAGCTTCCCGATAATGACTCA
Found at i:8782033 original size:15 final size:15
Alignment explanation
Indices: 8782002--8782036 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
8781992 GCCAAAGATG
8782002 TTAATTGAATTGAAT
1 TTAATTGAATTGAAT
*
8782017 TTAATATGAATTGATT
1 TTAAT-TGAATTGAAT
8782033 TTAA
1 TTAA
8782037 ATTCATTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (15 bp):
TTAATTGAATTGAAT
Found at i:8784404 original size:42 final size:42
Alignment explanation
Indices: 8784311--8784404 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 42
8784301 CCAAAAGCTT
* *
8784311 AACAGAAGCTCATGAGAGCTAAATAGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAGAGCTAAATAGAAACCCATAAGGGTTA
* * *
8784353 AACGGAAGCTCATAAGAGCTGGACTA-AAACCCATAAGGGTTA
1 AACAGAAGCTCATAAGAGCT-AAATAGAAACCCATAAGGGTTA
*
8784395 AACAAAAGCT
1 AACAGAAGCT
8784405 TAATAAATTT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 41 0.93
43 3 0.07
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTAAATAGAAACCCATAAGGGTTA
Found at i:8784459 original size:41 final size:42
Alignment explanation
Indices: 8784367--8784464 Score: 117
Period size: 41 Copynumber: 2.3 Consensus size: 42
8784357 GAAGCTCATA
* * *
8784367 AGAGCTGGACTAAAACCCATAAGGGTTAAACAAAAGCTTAAT
1 AGAGCTGAACGAAAACCCATAAGGGTCAAACAAAAGCTTAAT
* ** *
8784409 AAATTTGAACGAAAATCCATAA-GGTCAAACAAAAGCTTAAT
1 AGAGCTGAACGAAAACCCATAAGGGTCAAACAAAAGCTTAAT
8784450 AGAGCTGAACAGAAA
1 AGAGCTGAAC-GAAA
8784465 CTCATATGAG
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
41 25 0.56
42 20 0.44
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.18
Consensus pattern (42 bp):
AGAGCTGAACGAAAACCCATAAGGGTCAAACAAAAGCTTAAT
Found at i:8784483 original size:21 final size:21
Alignment explanation
Indices: 8784457--8784506 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
8784447 AATAGAGCTG
*
8784457 AACAGAAACTCAT-ATGAGTTA
1 AACAGAAACTCATGA-GAGATA
* *
8784478 AACAGAAGCTCGTGAGAGATA
1 AACAGAAACTCATGAGAGATA
8784499 AACAGAAA
1 AACAGAAA
8784507 GTAAACACGA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.50, C:0.14, G:0.20, T:0.16
Consensus pattern (21 bp):
AACAGAAACTCATGAGAGATA
Found at i:8786070 original size:17 final size:17
Alignment explanation
Indices: 8786048--8786081 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8786038 TTGCACTTAG
8786048 TTAATTAATTTAATTTA
1 TTAATTAATTTAATTTA
8786065 TTAATTAATTTAATTTA
1 TTAATTAATTTAATTTA
8786082 ACATCTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTAATTAATTTAATTTA
Found at i:8790447 original size:22 final size:22
Alignment explanation
Indices: 8790409--8790459 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
8790399 CTCTCAAATA
*
8790409 ACTACAA-ATTTCACTCTTTTT
1 ACTACAATATCTCACTCTTTTT
8790430 ACTACAATATCTCACTCTTTTT
1 ACTACAATATCTCACTCTTTTT
8790452 ACTACAAT
1 ACTACAAT
8790460 TGCAAAGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 7 0.25
22 21 0.75
ACGTcount: A:0.31, C:0.25, G:0.00, T:0.43
Consensus pattern (22 bp):
ACTACAATATCTCACTCTTTTT
Found at i:8794228 original size:29 final size:27
Alignment explanation
Indices: 8794187--8794245 Score: 100
Period size: 29 Copynumber: 2.1 Consensus size: 27
8794177 TTTAATTAAA
8794187 AAAAAGTATTTTAAAAATAAAATAATAAT
1 AAAAAGTATTTTAAAAATAAAA-AA-AAT
8794216 AAAAAGTATTTTAAAAATAAAAAAAAT
1 AAAAAGTATTTTAAAAATAAAAAAAAT
8794243 AAA
1 AAA
8794246 TATATTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 6 0.20
28 2 0.07
29 22 0.73
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.27
Consensus pattern (27 bp):
AAAAAGTATTTTAAAAATAAAAAAAAT
Found at i:8796582 original size:35 final size:35
Alignment explanation
Indices: 8796543--8796612 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
8796533 TTGATCTACA
8796543 AAATATCAATAGTTTAATATTTTATTTAAATTTTT
1 AAATATCAATAGTTTAATATTTTATTTAAATTTTT
8796578 AAATATCAATAGTTTAATATTTTATTTAAATTTTT
1 AAATATCAATAGTTTAATATTTTATTTAAATTTTT
8796613 TTCTTATACT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (35 bp):
AAATATCAATAGTTTAATATTTTATTTAAATTTTT
Found at i:8797215 original size:13 final size:13
Alignment explanation
Indices: 8797193--8797223 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8797183 GATTTTACCA
*
8797193 AAAATGTTTTACT
1 AAAATATTTTACT
8797206 AAAATATTTTACT
1 AAAATATTTTACT
8797219 AAAAT
1 AAAAT
8797224 TATGATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (13 bp):
AAAATATTTTACT
Found at i:8798807 original size:90 final size:89
Alignment explanation
Indices: 8798634--8798888 Score: 244
Period size: 90 Copynumber: 2.8 Consensus size: 89
8798624 TAATAATCTG
* * ** * * * * *
8798634 CAACTCTAATGGTTCATCCACAAATTATTTGGTAGCTTTTATCTACAAAAAATGTTGTGCATTCA
1 CAACACTAGTGGTTCATCCACCCATT-TTTGGCAGCTCTTATCTGC-AAATATGTTGTGTATTCA
* ** *
8798699 CAACCATTTGGTAGCGTATTAACCTA
64 CAACCATCTGACAACGTATTAACCTA
*
8798725 CAATACTAGTGGTTCATCCACCCATTTTCTGGCAGCTCTTATCTGCAAATATGTTGTGTATTCAC
1 CAACACTAGTGGTTCATCCACCCATTTT-TGGCAGCTCTTATCTGCAAATATGTTGTGTATTCAC
* *
8798790 AACCATCTGACAACGTATTAACTTG
65 AACCATCTGACAACGTATTAACCTA
* * ** * *
8798815 CAACACTGGTGGTCCATCCACCGACA-TTTAAGCAGCTCTCATTTGCAAATATGTTGTGCT-TTC
1 CAACACTAGTGGTTCATCCACC--CATTTTTGGCAGCTCTTATCTGCAAATATGTTGTG-TATTC
8798878 ACAACCATCTG
63 ACAACCATCTG
8798889 GCAGTGTATT
Statistics
Matches: 137, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
90 96 0.70
91 39 0.28
92 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (89 bp):
CAACACTAGTGGTTCATCCACCCATTTTTGGCAGCTCTTATCTGCAAATATGTTGTGTATTCACA
ACCATCTGACAACGTATTAACCTA
Found at i:8798898 original size:90 final size:90
Alignment explanation
Indices: 8798685--8798908 Score: 265
Period size: 90 Copynumber: 2.5 Consensus size: 90
8798675 TCTACAAAAA
* * * * * * *
8798685 ATGTTGTGCATTCACAACCATTTGGTAGCGTATTAACCTACAATACTAGTGGTTCATCCACCCAT
1 ATGTTGTGCTTTCACAACCATCTGGCAGCGTATTAACTTGCAACACTAGTGGTCCATCCACCCAT
** *
8798750 TTTCTGGCAGCTCTTATCTGCAAAT
66 TTTCAAGCAGCTCTCATCTGCAAAT
* * *
8798775 ATGTTGTG-TATTCACAACCATCTGACAACGTATTAACTTGCAACACTGGTGGTCCATCCACCGA
1 ATGTTGTGCT-TTCACAACCATCTGGCAGCGTATTAACTTGCAACACTAGTGGTCCATCCACC--
*
8798839 CA-TTT-AAGCAGCTCTCATTTGCAAAT
63 CATTTTCAAGCAGCTCTCATCTGCAAAT
*
8798865 ATGTTGTGCTTTCACAACCATCTGGCAGTGTATTAACTTGCAAC
1 ATGTTGTGCTTTCACAACCATCTGGCAGCGTATTAACTTGCAAC
8798909 TTTTGTGGTT
Statistics
Matches: 113, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
90 107 0.95
91 4 0.04
92 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.33
Consensus pattern (90 bp):
ATGTTGTGCTTTCACAACCATCTGGCAGCGTATTAACTTGCAACACTAGTGGTCCATCCACCCAT
TTTCAAGCAGCTCTCATCTGCAAAT
Found at i:8803931 original size:50 final size:50
Alignment explanation
Indices: 8803856--8804216 Score: 324
Period size: 50 Copynumber: 7.5 Consensus size: 50
8803846 ACAATTAAAA
* *
8803856 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAATGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAGTGAAAC
* * * * *
8803906 AGATTGAAGCTACAGCAGCGGATCTTAC-TTCC---C-TGGCAATTAAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAGTGAAAC
* * * * *
8803951 AGATTGAAGCTACAATAGCGGATCTTACTTTCCTAGCATTGTAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAGTGAAAC
* * * * *
8804001 AGATTGAAGCTACAGCAGTGGATCTTGC-TTCC--TCG--GCAGTTAAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAGTGAAAC
* *
8804046 AGAGTGAAGCTACAACAGCGGATCTTACTTTCCTAGT-GTTGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-TCGTTGCAGTGAAAC
* * * * *
8804096 AGATTGAAGCTACAACAGCGGATCTTGC-TTCC--CCG--ACAGTTAAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAGTGAAAC
* * *
8804141 AGGTTGAAGCTACAACAGCGGATCTTATTTTCCTAGT-GTTACAGTGAAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-TCGTTGCAGTGAAAC
* *
8804191 GGATTGAAGCTACAGCAGCGGATCTT
1 AGATTGAAGCTACAACAGCGGATCTT
8804217 GCTTCCTTGG
Statistics
Matches: 247, Mismatches: 46, Indels: 36
0.75 0.14 0.11
Matches are distributed among these distances:
45 95 0.38
46 13 0.05
47 2 0.01
48 2 0.01
49 14 0.06
50 121 0.49
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (50 bp):
AGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAGTGAAAC
Found at i:8804010 original size:95 final size:95
Alignment explanation
Indices: 8803847--8804298 Score: 611
Period size: 95 Copynumber: 4.8 Consensus size: 95
8803837 CCATAGATGA
* *
8803847 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAATGGAACAGATTG
1 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTG
*
8803912 AAGCTACAGCAGCGGATCTTACTTCCCTGG
66 AAGCTACAGCAGCGGATCTTGCTTCCCTGG
* * *
8803942 CAATTAAAAAGATTGAAGCTACAATAGCGGATCTTACTTTCCTAGCATTGTAGTGGAACAGATTG
1 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTG
*
8804007 AAGCTACAGCAGTGGATCTTGCTT-CCTCGG
66 AAGCTACAGCAGCGGATCTTGCTTCCCT-GG
* * *
8804037 CAGTTAAAAAGAGTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTG
1 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTG
* * *
8804102 AAGCTACAACAGCGGATCTTGCTTCCCCGA
66 AAGCTACAGCAGCGGATCTTGCTTCCCTGG
* * * * * * *
8804132 CAGTTAAAAAGGTTGAAGCTACAACAGCGGATCTTATTTTCCTAGTGTTACAGTGAAACGGATTG
1 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTG
*
8804197 AAGCTACAGCAGCGGATCTTGCTTCCTTGG
66 AAGCTACAGCAGCGGATCTTGCTTCCCTGG
* * * * * * * *
8804227 CAATTCAAAAGATCGAAGCCACAACGGCGAATCTTAC-TTCCCAGGCGATGCAGCGGAACAGATT
1 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCGTTGCAGTGGAACAGATT
8804291 GAAGCTAC
65 GAAGCTAC
8804299 GACGGCGAAT
Statistics
Matches: 312, Mismatches: 42, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
94 8 0.03
95 302 0.97
96 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (95 bp):
CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTG
AAGCTACAGCAGCGGATCTTGCTTCCCTGG
Found at i:8804351 original size:100 final size:100
Alignment explanation
Indices: 8804226--8805339 Score: 1164
Period size: 100 Copynumber: 11.2 Consensus size: 100
8804216 TGCTTCCTTG
*
8804226 GCAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* **
8804291 GAAGCTACGACGGCGAATCTCACTTCCTTGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* * * *
8804326 GCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTACTTCCCGGGTGATGCAGCGGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * *
8804391 GAAGCTACGACGGTGAATCTCACTTTCCCGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* * * * *
8804426 GTAATT-AAAAAATTGAAGCCACAACGGCGAATCTTACTT-CTAGGTGATGCAGCGGAACAAATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * * *
8804489 AAAGCTACGACGGTGAATCTTGCTTCCTCGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* * * * * * * * *
8804524 GCAGTTTC-AAAGATTGAAGCTACAATGGTGAATTTTACCTT-TCAGGCGGTGCAACGGAACATA
1 GCA-ATTCAAAAGATTGAAGCCACAACGGCGAATCTTA-CTTCCCAGGCGATGCAGCGGAACAGA
**
8804587 TTGAAGCTATAACGGCGAATC-CTGCTTCCCCGACATT
64 TTGAAGCTACGACGGCGAATCTC-GCTTCCCCGACATT
* * * *
8804624 GCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGTAGTGGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * *
8804689 GAAGCTACGACGACGAATCTCCCTTCCTCGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* * **
8804724 GCAATTTAAAATATCAAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * *
8804789 AAAGCTACGACAGCGAATCTCACTTCCCCGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
*
8804824 GCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTACTT-TCAGGCGATGCAGCGGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * * **
8804887 AAAGCTACGACGGTGAATCTTGCTTCCTTGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* * * * *
8804922 GCAGTTTC-AAAGATTGAAGCTACAACGGCGAATCTTACCTT-TCAGGCGGTGCAGCGGAATAGA
1 GCA-ATTCAAAAGATTGAAGCCACAACGGCGAATCTTA-CTTCCCAGGCGATGCAGCGGAACAGA
* *
8804985 TTGAAGCTACAACGGCGAATC-CTGCTTCCCTGACATT
64 TTGAAGCTACGACGGCGAATCTC-GCTTCCCCGACATT
* * * * *
8805022 GCAATTTAAAAGATTGAGGCTACAACGGCGAATCTTAC-TCCTAGGCGATGC-GACGGAATAGAT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAG-CGGAACAGAT
* * * *
8805085 TGAAGCTACGATGGTGAATCTCGTTTCCCCAACATT
65 TGAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* ** * * * *
8805121 GCAATTTAAAAGATTGAAGCTGCAATGGCGAATCTTACTTTCCAGGCGGTGCAACGGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * * * *
8805186 GAAGCTACAATGGTGAATCTTGTTTCCCCGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* * * * * * * *
8805221 ---ATGGT-AAATAGATTGAGGCCGCAACGACGAATCTTACTTTCCCTGGCGGTGTAGTGGAATA
1 GCAAT--TCAAA-AGATTGAAGCCACAACGGCGAATCTTAC-TTCCCAGGCGATGCAGCGGAACA
** ** *
8805282 GATTGAAGCTACGATAGCGAATCTTACTTCCTCGACATT
62 GATTGAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
*
8805321 GCAATT-AAACATATTGAAG
1 GCAATTCAAA-AGATTGAAG
8805340 AAGCCAATCC
Statistics
Matches: 864, Mismatches: 126, Indels: 47
0.83 0.12 0.05
Matches are distributed among these distances:
97 2 0.00
98 113 0.13
99 231 0.27
100 504 0.58
101 12 0.01
103 2 0.00
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (100 bp):
GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
Found at i:8804488 original size:49 final size:50
Alignment explanation
Indices: 8804241--8805005 Score: 202
Period size: 50 Copynumber: 15.4 Consensus size: 50
8804231 TCAAAAGATC
* * *
8804241 GAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
1 GAAGCCACAACGGCGAATCTTACTTCCTAGGAGATGCAGCGGAACAAATT
* * * * * **** *
8804291 GAAGCTACGACGGCGAATCTCACTTCCT-TGACATTGCAATTCAA-AAGATC
1 GAAGCCACAACGGCGAATCTTACTTCCTAGGAGA-TGCAGCGGAACAA-ATT
* ** * *
8804341 GAAGCCACAACGGTGAATCTTACTTCCCGGGTGATGCAGCGGAACAGATT
1 GAAGCCACAACGGCGAATCTTACTTCCTAGGAGATGCAGCGGAACAAATT
* * * * * * * *** *
8804391 GAAGCTACGACGGTGAATCTCACTTTCC--CGACATTGTA-ATTAAAAAATT
1 GAAGCCACAACGGCGAATCTTAC-TTCCTAGGAGA-TGCAGCGGAACAAATT
*
8804440 GAAGCCACAACGGCGAATCTTACTT-CTAGGTGATGCAGCGGAACAAATT
1 GAAGCCACAACGGCGAATCTTACTTCCTAGGAGATGCAGCGGAACAAATT
* * * * * * * *** *
8804489 AAAGCTACGACGGTGAATCTTGCTTCCT-CGACATTGCAGTTTCAA-AGATT
1 GAAGCCACAACGGCGAATCTTACTTCCTAGGAGA-TGCAG-CGGAACAAATT
* * * * * * * * *
8804539 GAAGCTACAATGGTGAATTTTACCTTTC-AGGCGGTGCAACGGAACATATT
1 GAAGCCACAACGGCGAATCTTA-CTTCCTAGGAGATGCAGCGGAACAAATT
* * * * ** * **** *
8804589 GAAGCTATAACGGCGAATCCTGCTTCC-CCGACATTGCAATTCAA-AAGATC
1 GAAGCCACAACGGCGAATCTTACTTCCTAGGAGA-TGCAGCGGAACAA-ATT
* * * * * *
8804639 GAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGTAGTGGAACAGATT
1 GAAGCCACAACGGCGAATCTTACTTCCTAGGAGATGCAGCGGAACAAATT
* * * ** * * **** *
8804689 GAAGCTACGACGACGAATCTCCCTTCCT-CGACATTGCAATTTAA-AATATC
1 GAAGCCACAACGGCGAATCTTACTTCCTAGGAGA-TGCAGCGGAACAA-ATT
* * * *
8804739 AAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
1 GAAGCCACAACGGCGAATCTTACTTCCTAGGAGATGCAGCGGAACAAATT
* * * * * ** * ***
8804789 AAAGCTACGACAGCGAATCTCACTTCC-CCGACATTGCA-ATTAA-AAGATT
1 GAAGCCACAACGGCGAATCTTACTTCCTAGGAGA-TGCAGCGGAACAA-ATT
* * *
8804838 GAAGCCACAACGGCGAATCTTACTTTC-AGGCGATGCAGCGGAACAGATT
1 GAAGCCACAACGGCGAATCTTACTTCCTAGGAGATGCAGCGGAACAAATT
* * * * * * * *** *
8804887 AAAGCTACGACGGTGAATCTTGCTTCCT-TGACATTGCAGTTTCAA-AGATT
1 GAAGCCACAACGGCGAATCTTACTTCCTAGGAGA-TGCAG-CGGAACAAATT
* * * * * *
8804937 GAAGCTACAACGGCGAATCTTACCTTTC-AGGCGGTGCAGCGGAATAGATT
1 GAAGCCACAACGGCGAATCTTA-CTTCCTAGGAGATGCAGCGGAACAAATT
*
8804987 GAAGCTACAACGGCGAATC
1 GAAGCCACAACGGCGAATC
8805006 CTGCTTCCCT
Statistics
Matches: 490, Mismatches: 192, Indels: 66
0.66 0.26 0.09
Matches are distributed among these distances:
47 1 0.00
48 10 0.02
49 132 0.27
50 320 0.65
51 27 0.06
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (50 bp):
GAAGCCACAACGGCGAATCTTACTTCCTAGGAGATGCAGCGGAACAAATT
Found at i:8804624 original size:298 final size:294
Alignment explanation
Indices: 8804233--8805339 Score: 1183
Period size: 298 Copynumber: 3.7 Consensus size: 294
8804223 TTGGCAATTC
* * * * *
8804233 AAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAATGGCGAATCTTACTT-TCAGGCGATGCAACGGAACAGATTGAAGCTA
* * **
8804298 CGACGGCGAAT-CTCACTTCCTTGACATTGCAATTCAAAAGATCGAAGCCACAACGGTGAATCTT
65 CAACGGCGAATCCT-GCTTCCCCGACATTGCAATTCAAAAGATCGAAGCCACAACGGTGAATCTT
*
8804362 ACTTCCCGGGTGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTTCCCGACATTG
129 ACTTCCCGGG-GATGCAGCGGAACAGATTGAAGCTACGACGGCGAATCTC-C-TTCCCGACATTG
* * *
8804427 TAA-TTAAAAAATTGAAGCCACAACGGCGAATCTTACTTCTAGGTGATGCAGCGGAACAAATTAA
191 CAATTTAAAAAATTGAAGCCACAACGGCGAATCTTACTTCTAGGCGATGCAGCGGAACAGATTAA
* *
8804491 AGCTACGACGGTGAATCTTGCTTCCTCGACATTGCAGTTT
256 AGCTACGACGGTGAATCTCGCTTCCCCGACATTGCA-TTT
* * * * *
8804531 CAAAGATTGAAGCTACAATGGTGAATTTTACCTTTCAGGCGGTGCAACGGAACATATTGAAGCTA
1 AAAAGATTGAAGCTACAATGGCGAATCTTA-CTTTCAGGCGATGCAACGGAACAGATTGAAGCTA
*
8804596 TAACGGCGAATCCTGCTTCCCCGACATTGCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTA
65 CAACGGCGAATCCTGCTTCCCCGACATTGCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTA
* * * *
8804661 CTTCCCAGGCGATGTAGTGGAACAGATTGAAGCTACGACGACGAATCTCCCTTCCTCGACATTGC
130 CTTCCC-GGGGATGCAGCGGAACAGATTGAAGCTACGACGGCGAATCT-CCTTCC-CGACATTGC
* ** *
8804726 AATTTAAAATATCAAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATTAA
192 AATTTAAAAAATTGAAGCCACAACGGCGAATCTTACTT-CTAGGCGATGCAGCGGAACAGATTAA
* * * *
8804791 AGCTACGACAGCGAATCTCACTTCCCCGACATTGCAATT
256 AGCTACGACGGTGAATCTCGCTTCCCCGACATTGCATTT
* * * *
8804830 AAAAGATTGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGATTAAAGCTAC
1 AAAAGATTGAAGCTACAATGGCGAATCTTACTTTCAGGCGATGCAACGGAACAGATTGAAGCTAC
* * * ** * * * *
8804895 GACGGTGAATCTTGCTTCCTTGACATTGCAGTTTC-AAAGATTGAAGCTACAACGGCGAATCTTA
66 AACGGCGAATCCTGCTTCCCCGACATTGCA-ATTCAAAAGATCGAAGCCACAACGGTGAATCTTA
* * * * *
8804959 CCTTTCAGGCGG-TGCAGCGGAATAGATTGAAGCTACAACGGCGAATCCTGCTTCCCTGACATTG
130 -CTTCCCGG-GGATGCAGCGGAACAGATTGAAGCTACGACGGCGAAT-CTCCTTCCC-GACATTG
* * * * * *
8805023 CAATTTAAAAGATTGAGGCTACAACGGCGAATCTTACTCCTAGGCGATGC-GACGGAATAGATTG
191 CAATTTAAAAAATTGAAGCCACAACGGCGAATCTTACTTCTAGGCGATGCAG-CGGAACAGATTA
* * *
8805087 AAGCTACGATGGTGAATCTCGTTTCCCCAACATTGCAATTT
255 AAGCTACGACGGTGAATCTCGCTTCCCCGACATTGC-ATTT
* *
8805128 AAAAGATTGAAGCTGCAATGGCGAATCTTACTTTCCAGGCGGTGCAACGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAATGGCGAATCTTACTTT-CAGGCGATGCAACGGAACAGATTGAAGCTA
* * * * * * * **
8805193 CAATGGTGAATCTTGTTTCCCCGACATT---ATGGT-AAATAGATTGAGGCCGCAACGACGAATC
65 CAACGGCGAATCCTGCTTCCCCGACATTGCAAT--TCAAA-AGATCGAAGCCACAACGGTGAATC
* * * ** *
8805254 TTACTTTCCCTGGCGG-TGTAGTGGAATAGATTGAAGCTACGATAGCGAATCTTACTTCCTCGAC
127 TTAC-TTCCC-GG-GGATGCAGCGGAACAGATTGAAGCTACGACGGCGAATC-TCCTTCC-CGAC
*
8805318 ATTGCAA-TTAAACATATTGAAG
187 ATTGCAATTTAAA-AAATTGAAG
8805340 AAGCCAATCC
Statistics
Matches: 682, Mismatches: 103, Indels: 47
0.82 0.12 0.06
Matches are distributed among these distances:
295 1 0.00
296 1 0.00
297 59 0.09
298 382 0.56
299 184 0.27
300 55 0.08
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (294 bp):
AAAAGATTGAAGCTACAATGGCGAATCTTACTTTCAGGCGATGCAACGGAACAGATTGAAGCTAC
AACGGCGAATCCTGCTTCCCCGACATTGCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTAC
TTCCCGGGGATGCAGCGGAACAGATTGAAGCTACGACGGCGAATCTCCTTCCCGACATTGCAATT
TAAAAAATTGAAGCCACAACGGCGAATCTTACTTCTAGGCGATGCAGCGGAACAGATTAAAGCTA
CGACGGTGAATCTCGCTTCCCCGACATTGCATTT
Found at i:8804671 original size:398 final size:398
Alignment explanation
Indices: 8804226--8805323 Score: 1479
Period size: 398 Copynumber: 2.8 Consensus size: 398
8804216 TGCTTCCTTG
8804226 GCAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
1 GCAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * *
8804291 GAAGCTACGACGGCGAATCTCACTTCCTTGACATTGCAATTCAAAAGATCGAAGCCACAACGGTG
66 GAAGCTACGACGGCGAATCTCACTTCCTCGACATTGCAATTTAAAAGATCGAAGCCACAACGGCG
* * *
8804356 AATCTTACTTCCCGGGTGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTTCCCG
131 AATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCCCG
* *
8804421 ACATTGTAATTAAAAAATTGAAGCCACAACGGCGAATCTTAC-TTCTAGGTGATGCAGCGGAACA
196 ACATTGCAATTAAAAAATTGAAGCCACAACGGCGAATCTTACTTTC-AGGCGATGCAGCGGAACA
*
8804485 AATTAAAGCTACGACGGTGAATCTTGCTTCCTCGACATTGCAGTTTCAAAGATTGAAGCTACAAT
260 AATTAAAGCTACGACGGTGAATCTTGCTTCCTCGACATTGCAGTTTCAAAGATTGAAGCTACAAC
* * * *
8804550 GGTGAATTTTACCTTTCAGGCGGTGCAACGGAACATATTGAAGCTATAACGGCGAATCCTGCTTC
325 GGCGAATCTTACCTTTCAGGCGGTGCAACGGAACAGATTGAAGCTACAACGGCGAATCCTGCTTC
8804615 CCCGACATT
390 CCCGACATT
* * *
8804624 GCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGTAGTGGAACAGATT
1 GCAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * * *
8804689 GAAGCTACGACGACGAATCTCCCTTCCTCGACATTGCAATTTAAAATATCAAAGCCACAACGGCG
66 GAAGCTACGACGGCGAATCTCACTTCCTCGACATTGCAATTTAAAAGATCGAAGCCACAACGGCG
* * *
8804754 AATCTTACTTCCCAGGCGATGCAGCGGAACAGATTAAAGCTACGACAGCGAATCTCACTTCCCCG
131 AATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCCCG
* *
8804819 ACATTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAG
196 ACATTGCAATTAAAAAATTGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAA
*
8804884 ATTAAAGCTACGACGGTGAATCTTGCTTCCTTGACATTGCAGTTTCAAAGATTGAAGCTACAACG
261 ATTAAAGCTACGACGGTGAATCTTGCTTCCTCGACATTGCAGTTTCAAAGATTGAAGCTACAACG
* *
8804949 GCGAATCTTACCTTTCAGGCGGTGCAGCGGAATAGATTGAAGCTACAACGGCGAATCCTGCTTCC
326 GCGAATCTTACCTTTCAGGCGGTGCAACGGAACAGATTGAAGCTACAACGGCGAATCCTGCTTCC
*
8805014 CTGACATT
391 CCGACATT
* * * * * *
8805022 GCAATTTAAAAGATTGAGGCTACAACGGCGAATCTTAC-TCCTAGGCGATGC-GACGGAATAGAT
1 GCAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAG-CGGAACAGAT
* * ** * * * ** *
8805085 TGAAGCTACGATGGTGAATCTCGTTTCCCCAACATTGCAATTTAAAAGATTGAAGCTGCAATGGC
65 TGAAGCTACGACGGCGAATCTCACTTCCTCGACATTGCAATTTAAAAGATCGAAGCCACAACGGC
* * * * * ***
8805150 GAATCTTACTTTCCAGGCGGTGCAACGGAACAGATTGAAGCTACAATGGTGAATCTTGTTTCCCC
130 GAATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCCC
* * * * * * * *
8805215 GACATT---ATGGTAAATAGATTGAGGCCGCAACGACGAATCTTACTTTCCCTGGCGGTGTAGTG
195 GACATTGCAAT--TAAA-AAATTGAAGCCACAACGGCGAATCTTACTTT--CAGGCGATGCAGCG
* * * ** * *
8805277 GAATAGATTGAAGCTACGATAGCGAATCTTACTTCCTCGACATTGCA
255 GAACAAATTAAAGCTACGACGGTGAATCTTGCTTCCTCGACATTGCA
8805324 ATTAAACATA
Statistics
Matches: 617, Mismatches: 76, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
394 2 0.00
396 5 0.01
397 159 0.26
398 398 0.65
399 53 0.09
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (398 bp):
GCAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
GAAGCTACGACGGCGAATCTCACTTCCTCGACATTGCAATTTAAAAGATCGAAGCCACAACGGCG
AATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCCCG
ACATTGCAATTAAAAAATTGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAA
ATTAAAGCTACGACGGTGAATCTTGCTTCCTCGACATTGCAGTTTCAAAGATTGAAGCTACAACG
GCGAATCTTACCTTTCAGGCGGTGCAACGGAACAGATTGAAGCTACAACGGCGAATCCTGCTTCC
CCGACATT
Found at i:8805985 original size:44 final size:44
Alignment explanation
Indices: 8805931--8806406 Score: 228
Period size: 44 Copynumber: 10.8 Consensus size: 44
8805921 GCCATTTGTC
* *
8805931 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGATT
* * ** *
8805975 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGATT
* * * * * **
8806018 CTTATCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATT--AG--T
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATCGAAG--ATTGCAGATT
*
8806062 CTTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCAGATT
1 C-TATCACCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGATT
* * ** *
8806107 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGATT
* * * * * * * ** *
8806150 CTTATCTTCCC-AATACAGTGGAGAAGCATATTTAAGCCGTT--AG--T
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATCGAAG--ATTGCAGATT
* *
8806194 CTTATCACCCTAAGCAGTAGTGGAATAGGTCGAAGATTGCAGATT
1 C-TATCACCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGATT
* * * * *
8806239 TTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTAAATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGATT
* * * * * * * ** *
8806283 TTATCTTCCC-AAGACATTGGAGAAGCAGATTTAAGCCATT--AG-TC
1 CTATC-ACCCTAAG-CAGTAGTGGAGTAGATCGAAG--ATTGCAGATT
* *
8806327 CTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGATT
* * *
8806371 CTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATCGAAGAT
8806407 GGTAAATCTT
Statistics
Matches: 314, Mismatches: 88, Indels: 60
0.68 0.19 0.13
Matches are distributed among these distances:
41 8 0.03
43 68 0.22
44 174 0.55
45 57 0.18
46 2 0.01
47 3 0.01
48 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (44 bp):
CTATCACCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGATT
Found at i:8806584 original size:132 final size:132
Alignment explanation
Indices: 8805837--8806560 Score: 1137
Period size: 132 Copynumber: 5.5 Consensus size: 132
8805827 AGCTACGAAT
* * *
8805837 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATGTTATCTTCCCAATAT
1 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGAC
* *
8805902 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
8805967 TG
131 TG
*
8805969 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
1 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGAC
* *
8806034 AGTGGAGAAGTAGATTTAAGCCATTAGTCTTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
8806099 TG
131 TG
*
8806101 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
1 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGAC
* * * *
8806166 AGTGGAGAAGCATATTTAAGCCGTTAGTCTTATCACCCTAAGCAGTAGTGGAATAGGTCGAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
8806231 TG
131 TG
* * * *
8806233 CAGATTTTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTAAATTTTATCTTCCCAAGAC
1 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGAC
* *
8806298 ATTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
8806363 TG
131 TG
* * * *
8806365 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTAAATCTTATCTTCCTAAGAT
1 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGAC
* * * *
8806430 AGTTGAGAAGCAGATTTGAA-CCATTAGTCCTATCACCCTAAGAAGTAGTGGAATAGGTCAAAGA
66 AGTGGAGAAGCAGATTT-AAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGA
8806494 TTG
130 TTG
* * * *
8806497 TAGATTCTGT-ATCCCTAAGCAATAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGA
1 CAGATTCTGTCA-CCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGA
8806561 TAGTAGGGAA
Statistics
Matches: 552, Mismatches: 38, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
131 1 0.00
132 549 0.99
133 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGAC
AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
TG
Found at i:8806897 original size:27 final size:28
Alignment explanation
Indices: 8806850--8806904 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
8806840 CATAAAACCC
*
8806850 AATTACAACCCAAACCCAATACCTAACA
1 AATTACAACCCAAACCCAATACCCAACA
*
8806878 AATTA-AA-CCAAGCCCAAATACCCAACA
1 AATTACAACCCAAACCC-AATACCCAACA
8806905 GGCCCAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.29
27 12 0.50
28 5 0.21
ACGTcount: A:0.51, C:0.35, G:0.02, T:0.13
Consensus pattern (28 bp):
AATTACAACCCAAACCCAATACCCAACA
Found at i:8807333 original size:13 final size:13
Alignment explanation
Indices: 8807315--8807339 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8807305 TTTTCATTTT
8807315 ATTTTGTTTTATC
1 ATTTTGTTTTATC
8807328 ATTTTGTTTTAT
1 ATTTTGTTTTAT
8807340 ACCCTTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.08, T:0.72
Consensus pattern (13 bp):
ATTTTGTTTTATC
Found at i:8808067 original size:3 final size:3
Alignment explanation
Indices: 8808061--8808085 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8808051 AACTAATAAG
8808061 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
8808086 CTATATCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8809009 original size:108 final size:105
Alignment explanation
Indices: 8808874--8809071 Score: 297
Period size: 105 Copynumber: 1.9 Consensus size: 105
8808864 AAAAATAATA
* *
8808874 AAGGTAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTC
1 AAGGCAATATTTTACGTTTGGAAATTCGAG-AAACGTGCCCTAATGTGCTGGGTTTCGA--TTTC
*
8808939 ACGTTCAACCAAATAGTCGAATATCCTTCCAAAAATTTCAAAT
63 ACGTTCAACCAAATAGTCAAATATCCTTCCAAAAATTTCAAAT
* * * *
8808982 AAGGCAATGTTTTACGTTTGGAAATTCGAGGAACGTGCCCTAATGTGTTGGGTTTCGATTTCTCG
1 AAGGCAATATTTTACGTTTGGAAATTCGAGAAACGTGCCCTAATGTGCTGGGTTTCGATTTCACG
*
8809047 TTTAACCAAATAGTCAAATATCCTT
66 TTCAACCAAATAGTCAAATATCCTT
8809072 TTGAATTTCA
Statistics
Matches: 82, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
105 29 0.35
107 26 0.32
108 27 0.33
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (105 bp):
AAGGCAATATTTTACGTTTGGAAATTCGAGAAACGTGCCCTAATGTGCTGGGTTTCGATTTCACG
TTCAACCAAATAGTCAAATATCCTTCCAAAAATTTCAAAT
Found at i:8817107 original size:31 final size:31
Alignment explanation
Indices: 8817066--8817126 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
8817056 GAAAAATTAG
*
8817066 CGGATTGAAATTTGGAATTTCGTAGCTCTGA
1 CGGATCGAAATTTGGAATTTCGTAGCTCTGA
*
8817097 CGGATCGAAATTTGGATTTTCGTAGCTCTG
1 CGGATCGAAATTTGGAATTTCGTAGCTCTG
8817127 GATATAAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (31 bp):
CGGATCGAAATTTGGAATTTCGTAGCTCTGA
Found at i:8818091 original size:61 final size:61
Alignment explanation
Indices: 8818004--8818127 Score: 162
Period size: 61 Copynumber: 2.0 Consensus size: 61
8817994 GCCAAATTTA
* * *
8818004 TTGAATTTTTAAAATTAGAACTAAAATGACAAATTTTGTAAACATT-GAGGGATAATTTTG
1 TTGAATTTTTAAAATTAGAACTAAAATAACAAATTGTGTAAACATTAAAGGGATAATTTTG
* * *
8818064 TTGAATTTTTTATATTTAGAA-TCAAAATAATAAATTGTGTAAACATTAAAGGGATAATTTTG
1 TTGAA-TTTTTAAAATTAGAACT-AAAATAACAAATTGTGTAAACATTAAAGGGATAATTTTG
8818126 TT
1 TT
8818128 ACTAGACCAA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
60 6 0.11
61 34 0.62
62 15 0.27
ACGTcount: A:0.41, C:0.04, G:0.14, T:0.41
Consensus pattern (61 bp):
TTGAATTTTTAAAATTAGAACTAAAATAACAAATTGTGTAAACATTAAAGGGATAATTTTG
Found at i:8819777 original size:19 final size:19
Alignment explanation
Indices: 8819737--8819788 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
8819727 CATTACTCGG
* *
8819737 ACACAAAGTGCATCTTGAC
1 ACACAAGGTGCATCCTGAC
*
8819756 ACACAAGGTGCATCCTGCC
1 ACACAAGGTGCATCCTGAC
**
8819775 ACATGAGGTGCATC
1 ACACAAGGTGCATC
8819789 TTGGCGCATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (19 bp):
ACACAAGGTGCATCCTGAC
Found at i:8826630 original size:28 final size:27
Alignment explanation
Indices: 8826558--8826639 Score: 89
Period size: 29 Copynumber: 3.0 Consensus size: 27
8826548 ATAACGTTTA
*
8826558 ATAATTTTTAATAAATTA-TATATATTT
1 ATAATTTCTAATAAATTATTATAT-TTT
*
8826585 ATAATTTTCTAAAGAAATTATTATATTTT
1 ATAA-TTTCT-AATAAATTATTATATTTT
8826614 ATTAATTTCTAATAAATT-TTA-ATTTT
1 A-TAATTTCTAATAAATTATTATATTTT
8826640 TTTTTAAAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
26 5 0.10
27 7 0.15
28 11 0.23
29 17 0.35
30 8 0.17
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.55
Consensus pattern (27 bp):
ATAATTTCTAATAAATTATTATATTTT
Found at i:8826641 original size:28 final size:27
Alignment explanation
Indices: 8826554--8826646 Score: 71
Period size: 28 Copynumber: 3.3 Consensus size: 27
8826544 TTTTATAACG
* * * *
8826554 TTTAATAATTTTTAATAAATTATATATA
1 TTTATTAATTTCTAATAAATTTTAT-TT
* *
8826582 TTTA-TAATTTTCTAAAGAAATTATTATAT
1 TTTATTAA-TTTCT-AATAAATT-TTATTT
8826611 TTTATTAATTTCTAATAAATTTTAATTT
1 TTTATTAATTTCTAATAAATTTT-ATTT
*
8826639 TTTTTTAA
1 TTTATTAA
8826647 AAATTACTAC
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
27 5 0.10
28 25 0.48
29 16 0.31
30 6 0.12
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (27 bp):
TTTATTAATTTCTAATAAATTTTATTT
Found at i:8827090 original size:19 final size:18
Alignment explanation
Indices: 8827066--8827141 Score: 73
Period size: 19 Copynumber: 4.1 Consensus size: 18
8827056 TCATAACATA
* *
8827066 TTAATAGTTTTTTTAATAT
1 TTAATAATTTTTATAAT-T
8827085 TTAATAATTTTTATAATT
1 TTAATAATTTTTATAATT
* *
8827103 TTAA-AAATTTTATGATAT
1 TTAATAATTTTTATAAT-T
*
8827121 TTAATAATTTTGATAGATT
1 TTAATAATTTTTATA-ATT
8827140 TT
1 TT
8827142 TTTTATAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
17 10 0.21
18 10 0.21
19 25 0.53
20 2 0.04
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (18 bp):
TTAATAATTTTTATAATT
Found at i:8827095 original size:18 final size:18
Alignment explanation
Indices: 8827074--8827131 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
8827064 TATTAATAGT
8827074 TTTTTTAATATTTAATAA
1 TTTTTTAATATTTAATAA
*
8827092 TTTTTATAAT-TTTAAAAA
1 TTTTT-TAATATTTAATAA
* *
8827110 TTTTATGATATTTAATAA
1 TTTTTTAATATTTAATAA
8827128 TTTT
1 TTTT
8827132 GATAGATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
17 3 0.09
18 27 0.79
19 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTTTTAATATTTAATAA
Found at i:8827149 original size:49 final size:51
Alignment explanation
Indices: 8827092--8827207 Score: 132
Period size: 49 Copynumber: 2.3 Consensus size: 51
8827082 TATTTAATAA
*
8827092 TTTTTATAATTTTAAAAATTTTATGATA-TTTAAT-AATTTT-G-ATAGATTT
1 TTTTTATAATTTTAAAAATTTTA-AATATTTTAATGAATTTTAGCATA-ATTT
* *
8827141 TTTTTATAAATTTCAAAATTTTAAATATTTTAATGAATTTTAGCTATAATTT
1 TTTTTATAATTTTAAAAATTTTAAATATTTTAATGAATTTTAGC-ATAATTT
* *
8827193 TTATAATAATTTTAA
1 TTTTTATAATTTTAA
8827208 TATTTTGGTT
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
48 3 0.05
49 27 0.49
50 6 0.11
51 1 0.02
52 15 0.27
53 3 0.05
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (51 bp):
TTTTTATAATTTTAAAAATTTTAAATATTTTAATGAATTTTAGCATAATTT
Found at i:8827245 original size:10 final size:10
Alignment explanation
Indices: 8827079--8827236 Score: 50
Period size: 9 Copynumber: 15.7 Consensus size: 10
8827069 ATAGTTTTTT
8827079 TAATATTTA-A
1 TAAT-TTTATA
8827089 TAATTTT-TA
1 TAATTTTATA
8827098 TAATTTTA-A
1 TAATTTTATA
*
8827107 AAATTTTATGA
1 TAATTTTAT-A
8827118 T-A-TTTA-A
1 TAATTTTATA
8827125 TAATTTTGATA
1 TAATTTT-ATA
* * *
8827136 GATTTTTTTTA
1 TA-ATTTTATA
*
8827147 TAAATTTCA-A
1 T-AATTTTATA
*
8827157 -AATTTTAAA
1 TAATTTTATA
8827166 T-ATTTTA-A
1 TAATTTTATA
8827174 TGAATTTTAGCTA
1 T-AATTTTA--TA
8827187 TAATTTTTATAA
1 TAA-TTTTAT-A
8827199 TAATTTTA-A
1 TAATTTTATA
* * *
8827208 TATTTTGGTTTT
1 TAATTT--TATA
8827220 TAATTTTATA
1 TAATTTTATA
8827230 TAATTTT
1 TAATTTT
8827237 CTATCATTTC
Statistics
Matches: 110, Mismatches: 16, Indels: 44
0.65 0.09 0.26
Matches are distributed among these distances:
7 2 0.02
8 9 0.08
9 39 0.35
10 22 0.20
11 15 0.14
12 16 0.15
13 7 0.06
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.57
Consensus pattern (10 bp):
TAATTTTATA
Found at i:8827279 original size:19 final size:18
Alignment explanation
Indices: 8827242--8827284 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
8827232 ATTTTCTATC
8827242 ATTTCTAAAAAAAATTAAT
1 ATTT-TAAAAAAAATTAAT
*
8827261 ATTTTAAAAAAATTATAAT
1 ATTTTAAAAAAAAT-TAAT
8827280 ATTTT
1 ATTTT
8827285 GATAACTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTTAAAAAAAATTAAT
Found at i:8828353 original size:28 final size:28
Alignment explanation
Indices: 8828308--8828380 Score: 78
Period size: 30 Copynumber: 2.6 Consensus size: 28
8828298 TTTTTAATAT
*
8828308 GAAAAAAAAACAATGAGAGAG-AAA-AG
1 GAAAAAAAAACAAAGAGAGAGTAAAGAG
*
8828334 GAAAAAAAAATCAAGAGAGATAGTAAAGAG
1 GAAAAAAAAA-CAA-AGAGAGAGTAAAGAG
*
8828364 GAAAAAAGAAAGAAAGA
1 GAAAAAA-AAACAAAGA
8828381 ATAAAAGAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
26 10 0.26
27 3 0.08
28 6 0.15
29 6 0.15
30 11 0.28
31 3 0.08
ACGTcount: A:0.68, C:0.03, G:0.23, T:0.05
Consensus pattern (28 bp):
GAAAAAAAAACAAAGAGAGAGTAAAGAG
Found at i:8834100 original size:51 final size:51
Alignment explanation
Indices: 8834041--8834146 Score: 185
Period size: 51 Copynumber: 2.1 Consensus size: 51
8834031 ATAGATTTTC
* *
8834041 AATTGGTATTAGAGTTAAACACTTGACGCACTAAGTAAAGATCATGTGATT
1 AATTGGTATTAGAGTTAAACACTTGACGCACCAAGTAAAGATCATGTCATT
*
8834092 AATTGGTATTAGAGTTAAACACTTGACGTACCAAGTAAAGATCATGTCATT
1 AATTGGTATTAGAGTTAAACACTTGACGCACCAAGTAAAGATCATGTCATT
8834143 AATT
1 AATT
8834147 TTTTTAGAGA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (51 bp):
AATTGGTATTAGAGTTAAACACTTGACGCACCAAGTAAAGATCATGTCATT
Found at i:8839586 original size:22 final size:23
Alignment explanation
Indices: 8839561--8839622 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 23
8839551 TTACAATAAA
8839561 TTCCAATTT-ATT-TGTGATAATT
1 TTCC-ATTTAATTGTGTGATAATT
*
8839583 TTCCCTTTGAATTGTGTGATAATT
1 TTCCATTT-AATTGTGTGATAATT
*
8839607 TTCCCTTTGAATTGTG
1 TTCCATTT-AATTGTG
8839623 CTATTTAAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
21 3 0.08
22 4 0.11
23 3 0.08
24 26 0.72
ACGTcount: A:0.21, C:0.13, G:0.15, T:0.52
Consensus pattern (23 bp):
TTCCATTTAATTGTGTGATAATT
Found at i:8839605 original size:24 final size:24
Alignment explanation
Indices: 8839573--8839622 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
8839563 CCAATTTATT
8839573 TGTGATAATTTTCCCTTTGAATTG
1 TGTGATAATTTTCCCTTTGAATTG
8839597 TGTGATAATTTTCCCTTTGAATTG
1 TGTGATAATTTTCCCTTTGAATTG
8839621 TG
1 TG
8839623 CTATTTAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.12, G:0.18, T:0.50
Consensus pattern (24 bp):
TGTGATAATTTTCCCTTTGAATTG
Found at i:8840763 original size:28 final size:28
Alignment explanation
Indices: 8840732--8840818 Score: 85
Period size: 28 Copynumber: 3.1 Consensus size: 28
8840722 CATTACCAAC
8840732 CAATTCATATACAAATCATGCTAATACT
1 CAATTCATATACAAATCATGCTAATACT
* *
8840760 CAATCCA-ATTCAAATACCAT--TACCA-AC-
1 CAATTCATATACAAAT--CATGCTA--ATACT
8840787 CAATTCATATACAAATCATGCTAATACT
1 CAATTCATATACAAATCATGCTAATACT
8840815 CAAT
1 CAAT
8840819 CCACAAAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 18
0.68 0.06 0.26
Matches are distributed among these distances:
26 4 0.09
27 17 0.37
28 21 0.46
29 4 0.09
ACGTcount: A:0.44, C:0.25, G:0.02, T:0.29
Consensus pattern (28 bp):
CAATTCATATACAAATCATGCTAATACT
Found at i:8840768 original size:33 final size:33
Alignment explanation
Indices: 8840731--8840821 Score: 96
Period size: 33 Copynumber: 3.1 Consensus size: 33
8840721 CCATTACCAA
8840731 CCAATTCATATACAAATCATGCTAATACTCAAT
1 CCAATTCATATACAAATCATGCTAATACTCAAT
*
8840764 CCAATTCAAATAC----CA---T--TAC-CAA-
1 CCAATTCATATACAAATCATGCTAATACTCAAT
8840786 CCAATTCATATACAAATCATGCTAATACTCAAT
1 CCAATTCATATACAAATCATGCTAATACTCAAT
8840819 CCA
1 CCA
8840822 CAAAATAACA
Statistics
Matches: 45, Mismatches: 2, Indels: 22
0.65 0.03 0.32
Matches are distributed among these distances:
22 12 0.27
23 3 0.07
24 3 0.07
26 3 0.07
29 3 0.07
31 3 0.07
32 3 0.07
33 15 0.33
ACGTcount: A:0.43, C:0.27, G:0.02, T:0.27
Consensus pattern (33 bp):
CCAATTCATATACAAATCATGCTAATACTCAAT
Found at i:8840772 original size:55 final size:55
Alignment explanation
Indices: 8840707--8840821 Score: 230
Period size: 55 Copynumber: 2.1 Consensus size: 55
8840697 AATTGCAGAT
8840707 ATCCAATTCAAATACCATTACCAACCAATTCATATACAAATCATGCTAATACTCA
1 ATCCAATTCAAATACCATTACCAACCAATTCATATACAAATCATGCTAATACTCA
8840762 ATCCAATTCAAATACCATTACCAACCAATTCATATACAAATCATGCTAATACTCA
1 ATCCAATTCAAATACCATTACCAACCAATTCATATACAAATCATGCTAATACTCA
8840817 ATCCA
1 ATCCA
8840822 CAAAATAACA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 60 1.00
ACGTcount: A:0.43, C:0.28, G:0.02, T:0.27
Consensus pattern (55 bp):
ATCCAATTCAAATACCATTACCAACCAATTCATATACAAATCATGCTAATACTCA
Found at i:8866482 original size:13 final size:13
Alignment explanation
Indices: 8866464--8866488 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8866454 TAAGTTATAT
8866464 GTGTGAAAATTTC
1 GTGTGAAAATTTC
8866477 GTGTGAAAATTT
1 GTGTGAAAATTT
8866489 GATAGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:8868199 original size:41 final size:41
Alignment explanation
Indices: 8868140--8868244 Score: 140
Period size: 41 Copynumber: 2.6 Consensus size: 41
8868130 GGTTTAAAAC
* * * * *
8868140 CTAGCAGGCTTAAGGCCGGTGAAGTTATTCGGACTTTATGT
1 CTAGCAGGCTTAATGCCGGTGAAATAATTCAGACTTTAAGT
*
8868181 CTAGCAGGCTTTATGCCGGTGAAATAATTCAGACTTTAAGT
1 CTAGCAGGCTTAATGCCGGTGAAATAATTCAGACTTTAAGT
8868222 CTAGCAGGC-TAATTGCCGGTGAA
1 CTAGCAGGCTTAA-TGCCGGTGAA
8868245 TTGAATCAGG
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 2 0.04
41 54 0.96
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (41 bp):
CTAGCAGGCTTAATGCCGGTGAAATAATTCAGACTTTAAGT
Found at i:8873362 original size:29 final size:28
Alignment explanation
Indices: 8873315--8873396 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 28
8873305 ACGAGATGCA
* * *
8873315 AAAGTGCAAGTCAAAGTGGCAGACAATCC
1 AAAGTACAAGCCAAAGTGGCGGACAAT-C
*
8873344 AAAGTACAAGCCAAGGTGGCGGACAATC
1 AAAGTACAAGCCAAAGTGGCGGACAATC
*
8873372 TAAGTGA-AAGCCAAAGTGGCGGACA
1 AAAGT-ACAAGCCAAAGTGGCGGACA
8873397 GTCTAACTGC
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 22 0.48
29 24 0.52
ACGTcount: A:0.40, C:0.20, G:0.28, T:0.12
Consensus pattern (28 bp):
AAAGTACAAGCCAAAGTGGCGGACAATC
Found at i:8873385 original size:28 final size:28
Alignment explanation
Indices: 8873316--8873402 Score: 95
Period size: 28 Copynumber: 3.1 Consensus size: 28
8873306 CGAGATGCAA
* * * *
8873316 AAGTGCAAGTCAAAGTGGCAGACAATCCA
1 AAGTGAAAGCCAAAGTGGCGGACAAT-CT
*
8873345 AAGT-ACAAGCCAAGGTGGCGGACAATCT
1 AAGTGA-AAGCCAAAGTGGCGGACAATCT
*
8873373 AAGTGAAAGCCAAAGTGGCGGACAGTCT
1 AAGTGAAAGCCAAAGTGGCGGACAATCT
8873401 AA
1 AA
8873403 CTGCGAACTG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 27 0.55
29 22 0.45
ACGTcount: A:0.39, C:0.20, G:0.28, T:0.14
Consensus pattern (28 bp):
AAGTGAAAGCCAAAGTGGCGGACAATCT
Found at i:8876859 original size:51 final size:52
Alignment explanation
Indices: 8876776--8876875 Score: 148
Period size: 51 Copynumber: 1.9 Consensus size: 52
8876766 GGTACTTCTG
* * *
8876776 AAAACCAACATAATCATTTTAGTTATCAATAAATGTCATCTTCAAACAACTA
1 AAAACCAACATAATCACTTTAGTTATCAATAAATATCATCATCAAACAACTA
* *
8876828 AAAACCAACATAATC-CTTTAGTTATTAATAAATATCATCATCTAACAA
1 AAAACCAACATAATCACTTTAGTTATCAATAAATATCATCATCAAACAA
8876876 TCCAATCAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
51 28 0.65
52 15 0.35
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (52 bp):
AAAACCAACATAATCACTTTAGTTATCAATAAATATCATCATCAAACAACTA
Found at i:8880436 original size:25 final size:25
Alignment explanation
Indices: 8880408--8880460 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
8880398 ATTTTTGAAT
*
8880408 TTGATAATGATTTTGTG-TTTTGTTA
1 TTGATAAT-AGTTTGTGATTTTGTTA
*
8880433 TTGATGATAGTTTGTGATTTTTGTTA
1 TTGATAATAGTTTGTGA-TTTTGTTA
8880459 TT
1 TT
8880461 TGTTGTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 7 0.29
25 7 0.29
26 10 0.42
ACGTcount: A:0.19, C:0.00, G:0.21, T:0.60
Consensus pattern (25 bp):
TTGATAATAGTTTGTGATTTTGTTA
Found at i:8881210 original size:43 final size:44
Alignment explanation
Indices: 8881104--8881210 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 44
8881094 ATGTGTTGTC
*
8881104 ATGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGATTTAC
1 ATGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGATTTAA
* **
8881148 GTGTAAGACCTTGTCTGGGACAG-TGGCATCGA-TATGTGA-TTAA
1 ATGTAAGACCACGTCTGGGAC-GTTGGCATCGACT-TGTGATTTAA
*
8881191 ATGTAAGACCACATCTGGGA
1 ATGTAAGACCACGTCTGGGA
8881211 TGATGGCGTT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
43 20 0.38
44 32 0.60
45 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (44 bp):
ATGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGATTTAA
Found at i:8887930 original size:16 final size:16
Alignment explanation
Indices: 8887904--8887945 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
8887894 GCAATTAAGG
*
8887904 TTAGGGTTTTT-GAGTT
1 TTAGAGTTTTTAGA-TT
*
8887920 TTTGAGTTTTTAGATT
1 TTAGAGTTTTTAGATT
8887936 TTAGAGTTTT
1 TTAGAGTTTT
8887946 AAGGAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 20 0.91
17 2 0.09
ACGTcount: A:0.17, C:0.00, G:0.24, T:0.60
Consensus pattern (16 bp):
TTAGAGTTTTTAGATT
Found at i:8888677 original size:96 final size:97
Alignment explanation
Indices: 8888568--8888887 Score: 427
Period size: 96 Copynumber: 3.3 Consensus size: 97
8888558 AACAACTAGC
* *
8888568 TTATTTGATTTTTT-CTTAAAAACCCTAAATACTAAACCCCAATCTAATTTTTTTAAAATTTATA
1 TTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTTAAAATTTATA
8888632 ATTAATTTACTCAAGTAACCTTAAACCCTAAT
66 ATTAATTTACTCAAGTAACCTTAAACCCTAAT
* ** *
8888664 TTATTTGATTTTTTTCCTCAAAAACCCTAAACACTAAACCCTAATCT-ATTTTTAAAAAAATTAT
1 TTATTTGA-TTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTTAAAATTTAT
8888728 AATTAATTTACTCAAGTAACCTTAAACCCTAAT
65 AATTAATTTACTCAAGTAACCTTAAACCCTAAT
*
8888761 TTATTTGATTTTTTCCTT-AAAACCCATAAACATTAAACCCTAATCTAA-TTTTTTAAAATTTAT
1 TTATTTGATTTTTTCCTTAAAAACCC-TAAACACTAAACCCTAATCTAATTTTTTTAAAATTTAT
* * * * ** *
8888824 AATTAATTTAATTAAGAAACCCTAAATCCAAAACCC
65 AATTAATTTACTCAAGTAACCTTAAA-CCCTAA--T
8888860 TTATTT-ATTTTTTCCTT-AAAACCCTAAA
1 TTATTTGATTTTTTCCTTAAAAACCCTAAA
8888888 ATCTAAAAAC
Statistics
Matches: 199, Mismatches: 18, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
95 7 0.04
96 70 0.35
97 70 0.35
98 46 0.23
99 6 0.03
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.40
Consensus pattern (97 bp):
TTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTTAAAATTTATA
ATTAATTTACTCAAGTAACCTTAAACCCTAAT
Found at i:8888747 original size:97 final size:95
Alignment explanation
Indices: 8888568--8888887 Score: 419
Period size: 97 Copynumber: 3.3 Consensus size: 95
8888558 AACAACTAGC
* * *
8888568 TTATTTGATTTTTTCTTAAAAACCCTAAATACTAAACCCCAATCTAATTTTTTTAAAATTTATAA
1 TTATTTGATTTTTTCCTAAAAACCCTAAACACTAAACCCTAATCTAA-TTTTTTAAAATTTATAA
8888633 TTAATTTACTCAAGTAACCTTAAACCCTAAT
65 TTAATTTACTCAAGTAACCTTAAACCCTAAT
* *
8888664 TTATTTGATTTTTTTCCTCAAAAACCCTAAACACTAAACCCTAATCT-ATTTTTAAAAAAATTAT
1 TTATTTGA-TTTTTTCCT-AAAAACCCTAAACACTAAACCCTAATCTAATTTTT-TAAAATTTAT
8888728 AATTAATTTACTCAAGTAACCTTAAACCCTAAT
63 AATTAATTTACTCAAGTAACCTTAAACCCTAAT
* *
8888761 TTATTTGATTTTTTCCTTAAAACCCATAAACATTAAACCCTAATCTAATTTTTTAAAATTTATAA
1 TTATTTGATTTTTTCCTAAAAACCC-TAAACACTAAACCCTAATCTAATTTTTTAAAATTTATAA
* * * * ** *
8888826 TTAATTTAATTAAGAAACCCTAAATCCAAAACCC
65 TTAATTTACTCAAGTAACCTTAAA-CCCTAA--T
*
8888860 TTATTT-ATTTTTTCCTTAAAACCCTAAA
1 TTATTTGATTTTTTCCTAAAAACCCTAAA
8888888 ATCTAAAAAC
Statistics
Matches: 200, Mismatches: 16, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
95 7 0.04
96 71 0.35
97 72 0.36
98 44 0.22
99 6 0.03
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.40
Consensus pattern (95 bp):
TTATTTGATTTTTTCCTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAATTTATAAT
TAATTTACTCAAGTAACCTTAAACCCTAAT
Found at i:8893013 original size:29 final size:31
Alignment explanation
Indices: 8892972--8893029 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 31
8892962 TAAACTTTAA
* *
8892972 TTAATTTGGTTTAAT-TAA-CTTAACTAAGT
1 TTAATTTGCTTTAATCTAATATTAACTAAGT
*
8893001 TTAATTTTCTTTAATCTAATATTAACTAA
1 TTAATTTGCTTTAATCTAATATTAACTAA
8893030 TGTTAAAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 13 0.54
30 3 0.12
31 8 0.33
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50
Consensus pattern (31 bp):
TTAATTTGCTTTAATCTAATATTAACTAAGT
Found at i:8894943 original size:22 final size:22
Alignment explanation
Indices: 8894915--8894960 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
8894905 GATTAAGTAA
*
8894915 ATCACTAGGATCAACTCTCATT
1 ATCACTAGGATCAACTCCCATT
8894937 ATCACTAGGATCAACTCCCATT
1 ATCACTAGGATCAACTCCCATT
8894959 AT
1 AT
8894961 ATGATTGTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30
Consensus pattern (22 bp):
ATCACTAGGATCAACTCCCATT
Found at i:8898412 original size:8 final size:9
Alignment explanation
Indices: 8898389--8898422 Score: 52
Period size: 8 Copynumber: 3.8 Consensus size: 9
8898379 ACTGGAAAAC
8898389 ATGTATGTGA
1 ATGTATGT-A
8898399 ATGTATGT-
1 ATGTATGTA
8898407 ATGTATGTA
1 ATGTATGTA
8898416 ATGTATG
1 ATGTATG
8898423 CTGCCCTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.35
9 7 0.30
10 8 0.35
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.44
Consensus pattern (9 bp):
ATGTATGTA
Found at i:8900050 original size:24 final size:24
Alignment explanation
Indices: 8900010--8900063 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
8900000 AACTTTTCTA
8900010 TCAAAGTTATCAATAAA-TTTGAC
1 TCAAAGTTATCAATAAACTTTGAC
*
8900033 TTCAAA-TTTTCAAGTAAACTTTTGAC
1 -TCAAAGTTATCAA-TAAAC-TTTGAC
8900059 TCAAA
1 TCAAA
8900064 ATTTGTGTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 6 0.23
24 9 0.35
25 5 0.19
26 6 0.23
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (24 bp):
TCAAAGTTATCAATAAACTTTGAC
Found at i:8900850 original size:16 final size:15
Alignment explanation
Indices: 8900824--8900871 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
8900814 CCATATGACA
8900824 TATTTTT-ATATTATT
1 TATTTTTAATATT-TT
8900839 TATTTTTAATATTTT
1 TATTTTTAATATTTT
8900854 TATTTTGTAATTATTTT
1 TATTTT-TAA-TATTTT
8900871 T
1 T
8900872 TAACTTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 15 0.50
16 8 0.27
17 7 0.23
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (15 bp):
TATTTTTAATATTTT
Found at i:8901482 original size:15 final size:15
Alignment explanation
Indices: 8901462--8901491 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8901452 TTATAGATGA
*
8901462 AAAAAAATGAAAAAT
1 AAAAAAATAAAAAAT
8901477 AAAAAAATAAAAAAT
1 AAAAAAATAAAAAAT
8901492 TGATTCTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (15 bp):
AAAAAAATAAAAAAT
Found at i:8901920 original size:20 final size:19
Alignment explanation
Indices: 8901888--8901925 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
8901878 ATTTTTTTTA
8901888 AAAAAATTCTTAACAATAAT
1 AAAAAATTCTTAA-AATAAT
8901908 AAAAAA-TCTTTAAAATAA
1 AAAAAATTC-TTAAAATAA
8901926 ATATAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAAAATTCTTAAAATAAT
Found at i:8910902 original size:19 final size:19
Alignment explanation
Indices: 8910874--8910917 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
8910864 TAATTATTAT
8910874 ATTTAAATATT-TAAATAAA
1 ATTTAAATATTCT-AATAAA
* *
8910893 ATTTATATATTCTAATTAA
1 ATTTAAATATTCTAATAAA
8910912 ATTTAA
1 ATTTAA
8910918 TAAATAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 20 0.95
20 1 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTTAAATATTCTAATAAA
Found at i:8925437 original size:78 final size:78
Alignment explanation
Indices: 8925305--8925460 Score: 276
Period size: 78 Copynumber: 2.0 Consensus size: 78
8925295 GACGTGATCG
*
8925305 ACTATTTTCAAATTTAACTGATTAATTGACTGATATAAGTCTTAATGAAACTAATTGAACTAACT
1 ACTATTTTCAAATTTAACTGATTAATTGACTAATATAAGTCTTAATGAAACTAATTGAACTAACT
8925370 TAATATTTTTTTT
66 TAATATTTTTTTT
* *
8925383 ACTATTTTTAAATTTAACTGATTAATTGACTAATATAAGTCTTAATGAATCTAATTGAACTAACT
1 ACTATTTTCAAATTTAACTGATTAATTGACTAATATAAGTCTTAATGAAACTAATTGAACTAACT
*
8925448 TAATTTTTTTTTT
66 TAATATTTTTTTT
8925461 CGATTTCGTC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.47
Consensus pattern (78 bp):
ACTATTTTCAAATTTAACTGATTAATTGACTAATATAAGTCTTAATGAAACTAATTGAACTAACT
TAATATTTTTTTT
Found at i:8928057 original size:132 final size:132
Alignment explanation
Indices: 8927666--8928209 Score: 815
Period size: 132 Copynumber: 4.1 Consensus size: 132
8927656 AATTGGTAAT
** * * *
8927666 TTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGCTAG-TGGCTTAAATATGCTTCCCTACTA
1 TTCAACCTACTCCACTGCTGC-TCAGGGAGAT-AGGATTGTTGGCTTAAATCTGCTTCCCTACTA
* * * * *
8927730 CCTCGAGAAGATAAGACTCGTCGTCTTTGATCTGCTCCAGTACTGCTTAGGGAGACAGGATATAC
64 CCTCGAGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAC
*
8927795 AATT
129 AATC
* * * * *
8927799 TTCAACCTACTCCACTACTGCTCAGGGAGATAGAACTGGTGGCTTAAATCTGCTT-CCTACTATC
1 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTGTTGGCTTAAATCTGCTTCCCTACTACC
* *
8927863 TCGAGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTACAA
66 TCGAGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
8927928 TC
131 TC
8927930 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTGTTGGCTTAAATCTGCTTCCCTACTACC
1 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTGTTGGCTTAAATCTGCTTCCCTACTACC
* * *
8927995 TTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCTACTACTGCTTAGGGAGAC-GGATTCTACA
66 TCGAGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGA-TCTACA
8928059 ATC
130 ATC
8928062 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTGTTGGCTTAAATCTGCTTCCCTACTACC
1 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTGTTGGCTTAAATCTGCTTCCCTACTACC
* * * *
8928127 TTGGGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
66 TCGAGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
8928192 TC
131 TC
8928194 TTCAACCTACTCCACT
1 TTCAACCTACTCCACT
8928210 ACAAACTTAG
Statistics
Matches: 377, Mismatches: 30, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
131 123 0.33
132 233 0.62
133 21 0.06
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (132 bp):
TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTGTTGGCTTAAATCTGCTTCCCTACTACC
TCGAGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
TC
Found at i:8928331 original size:89 final size:89
Alignment explanation
Indices: 8928221--8928584 Score: 370
Period size: 89 Copynumber: 4.1 Consensus size: 89
8928211 CAAACTTAGA
* * * * **
8928221 GAGGTAAGGTTGGTGTTTTCGATCTGCTTCACTGCCAGTATAGGAAGACAAGATCTGCTGTTTTC
1 GAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAGTATAGGAAGACAAGATCTGCTATCGTC
* * * *
8928286 AGTTTGCTTCGCTGTAAACTCATG
66 AGTCTGCTCCGCTGCAAACTCAAG
* ** ** * * * *
8928310 GAGGCAAGGCTAGTGTCTTCGATCTATTTTGCTGCCAATACAAGAAGACAAGATCTGCTATCTTC
1 GAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAGTATAGGAAGACAAGATCTGCTATCGTC
* * *
8928375 AGTTTGCACCTCTGCAAACTCAAG
66 AGTCTGCTCCGCTGCAAACTCAAG
* * *
8928399 GAGACAAGGCTGGTGTCTTCGATCTGCTTCGCTACCAGTATAGGAAGACAAGATCTGCTATCGTC
1 GAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAGTATAGGAAGACAAGATCTGCTATCGTC
*
8928464 AATCTGCTCCGCTGCAAACTC-AG
66 AGTCTGCTCCGCTGCAAACTCAAG
* * * * ** * * * *
8928487 AGAGGCAAGACTGGTGTCTTTGATCTGATTCATTGTTAGTATAGGAAAATAAAATCTACTATCGT
1 -GAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAGTATAGGAAGACAAGATCTGCTATCGT
* *
8928552 CAGTCTGCTTCGTTGCAAACTCAAG
65 CAGTCTGCTCCGCTGCAAACTCAAG
8928577 GAGGCAAG
1 GAGGCAAG
8928585 ACTTGTAACT
Statistics
Matches: 225, Mismatches: 48, Indels: 4
0.81 0.17 0.01
Matches are distributed among these distances:
88 2 0.01
89 221 0.98
90 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (89 bp):
GAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAGTATAGGAAGACAAGATCTGCTATCGTC
AGTCTGCTCCGCTGCAAACTCAAG
Found at i:8928795 original size:48 final size:46
Alignment explanation
Indices: 8928647--8928796 Score: 132
Period size: 45 Copynumber: 3.3 Consensus size: 46
8928637 CTTTAATCTA
* * * * *
8928647 CTCCACTACAACTTCAGGGAGATAAAATTCTCCATCTTCAGTC-TTC
1 CTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTC-TTCAATC
*
8928693 C-CCACTGCAACTTCAGGGGGATAAGACTT-G-C-T-TTCTTCAATC
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTCGCCATCTTCTTCAATC
* *
8928735 TGCTCTACTGCAACTTTAGGGAGATAAGATTCGCCATCTTCTTCAATC
1 --CTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCTTCAATC
8928783 CATTCCACTGCAAC
1 C--TCCACTGCAAC
8928797 CTTAATGGTA
Statistics
Matches: 83, Mismatches: 10, Indels: 20
0.73 0.09 0.18
Matches are distributed among these distances:
41 2 0.02
42 5 0.06
43 1 0.01
44 4 0.05
45 45 0.54
46 5 0.06
47 1 0.01
48 20 0.24
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (46 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCTTCAATC
Found at i:8929119 original size:24 final size:24
Alignment explanation
Indices: 8929092--8929147 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
8929082 CAAATTGCCC
8929092 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
8929116 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
*
8929140 CTACTGTA
1 CCACTGTA
8929148 CTTTTAGGAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGGTTCAAT
Found at i:8930104 original size:48 final size:48
Alignment explanation
Indices: 8930043--8930135 Score: 134
Period size: 48 Copynumber: 1.9 Consensus size: 48
8930033 CACCTTTTTC
* *
8930043 TTTTTTAATGACTCAAAGCGCCC-TTTGCGGGTTTTCACCTTGGTCTCT
1 TTTTTTAAGGACTCAAAGC-CCCATTTGCAGGTTTTCACCTTGGTCTCT
* *
8930091 TTTTTTTAGGACTCAAAGCCCCATTTGCAGGTTTTCATCTTGGTC
1 TTTTTTAAGGACTCAAAGCCCCATTTGCAGGTTTTCACCTTGGTC
8930136 ATTTTTCCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 3 0.08
48 37 0.93
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.42
Consensus pattern (48 bp):
TTTTTTAAGGACTCAAAGCCCCATTTGCAGGTTTTCACCTTGGTCTCT
Found at i:8931106 original size:23 final size:22
Alignment explanation
Indices: 8931082--8931124 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 22
8931072 TTCTTTTCCT
* *
8931082 TTCCTTTTTCCTTCTATTTTTCT
1 TTCCTTTTTCCATC-ATTTTCCT
*
8931105 TTTCTTTTTCCATCATTTTC
1 TTCCTTTTTCCATCATTTTC
8931125 ATTTTTTTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 1
0.81 0.14 0.05
Matches are distributed among these distances:
22 5 0.29
23 12 0.71
ACGTcount: A:0.07, C:0.26, G:0.00, T:0.67
Consensus pattern (22 bp):
TTCCTTTTTCCATCATTTTCCT
Found at i:8931151 original size:10 final size:10
Alignment explanation
Indices: 8931138--8931167 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
8931128 TTTTTGAAAT
8931138 ATTTTTTTTG
1 ATTTTTTTTG
8931148 ATTTTTTTT-
1 ATTTTTTTTG
8931157 ATTTTTTTTG
1 ATTTTTTTTG
8931167 A
1 A
8931168 AACTCATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (10 bp):
ATTTTTTTTG
Found at i:8934176 original size:19 final size:20
Alignment explanation
Indices: 8934152--8934198 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
8934142 TGGTGGACTT
* *
8934152 TAATGCATATG-ATGTAATG
1 TAATGCAAATGCATGAAATG
8934171 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
8934191 -AATGCAAA
1 TAATGCAAA
8934199 AAAGAGACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:8941801 original size:36 final size:36
Alignment explanation
Indices: 8941758--8941829 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
8941748 CCAAATACGC
8941758 CACCTACCTCCACTACACCTATCCCATCACATTCAA
1 CACCTACCTCCACTACACCTATCCCATCACATTCAA
* *
8941794 CACCTACCTCCACTACACCTTTTCCATCACATTCAA
1 CACCTACCTCCACTACACCTATCCCATCACATTCAA
8941830 TGTCTCACTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.29, C:0.46, G:0.00, T:0.25
Consensus pattern (36 bp):
CACCTACCTCCACTACACCTATCCCATCACATTCAA
Found at i:8956412 original size:26 final size:27
Alignment explanation
Indices: 8956378--8956437 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 27
8956368 TAAATAAATG
*
8956378 TTTTTTATTC-TTTAATTTTAAAATAC
1 TTTTTTATTCTTTTAATTTTAAAATAA
*
8956404 TTTTTTATTCTTTTTATTTTTAAAATAA
1 TTTTTTATTC-TTTTAATTTTAAAATAA
8956432 TTTTTT
1 TTTTTT
8956438 TGTTGTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 10 0.33
28 20 0.67
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (27 bp):
TTTTTTATTCTTTTAATTTTAAAATAA
Found at i:8956679 original size:7 final size:7
Alignment explanation
Indices: 8956665--8956716 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
8956655 TTTAACCTTT
8956665 AACCCTA
1 AACCCTA
*
8956672 AACTCTA
1 AACCCTA
8956679 AACCCTAA
1 AACCCT-A
*
8956687 AACCTTA
1 AACCCTA
8956694 AACCCTA
1 AACCCTA
**
8956701 AACTTTA
1 AACCCTA
8956708 AACCCTA
1 AACCCTA
8956715 AA
1 AA
8956717 AGCAGTGAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
7 30 0.83
8 6 0.17
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (7 bp):
AACCCTA
Found at i:8956682 original size:14 final size:14
Alignment explanation
Indices: 8956665--8956716 Score: 70
Period size: 14 Copynumber: 3.6 Consensus size: 14
8956655 TTTAACCTTT
8956665 AACCCTAAACTCTA
1 AACCCTAAACTCTA
8956679 AACCCTAAAAC-CTTA
1 AACCCT-AAACTC-TA
*
8956694 AACCCTAAACTTTA
1 AACCCTAAACTCTA
8956708 AACCCTAAA
1 AACCCTAAA
8956717 AGCAGTGAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
14 22 0.65
15 12 0.35
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (14 bp):
AACCCTAAACTCTA
Found at i:8956691 original size:29 final size:29
Alignment explanation
Indices: 8956658--8956717 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
8956648 TTTAATCTTT
*
8956658 AACCTTTAACCCTAAACTCTAAACCCTAA
1 AACCTTAAACCCTAAACTCTAAACCCTAA
*
8956687 AACCTTAAACCCTAAACTTTAAACCCTAA
1 AACCTTAAACCCTAAACTCTAAACCCTAA
8956716 AA
1 AA
8956718 GCAGTGAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.23
Consensus pattern (29 bp):
AACCTTAAACCCTAAACTCTAAACCCTAA
Found at i:8958588 original size:20 final size:23
Alignment explanation
Indices: 8958560--8958609 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 23
8958550 GTTTTTTACT
*
8958560 AAAATAATA-CAAAAGAA-ATA-
1 AAAAAAATACCAAAAGAATATAC
*
8958580 AAAAAAATACCAAAATAATATAC
1 AAAAAAATACCAAAAGAATATAC
8958603 AAAAAAA
1 AAAAAAA
8958610 CTTATTTACC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.32
21 7 0.28
22 3 0.12
23 7 0.28
ACGTcount: A:0.76, C:0.08, G:0.02, T:0.14
Consensus pattern (23 bp):
AAAAAAATACCAAAAGAATATAC
Found at i:8958701 original size:27 final size:27
Alignment explanation
Indices: 8958661--8958723 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
8958651 GGTAATGGAA
* *
8958661 TGGCGGCACCGGTGGTGCCTTTCTCAT
1 TGGCGGCACCGGTGGTGCCATTCCCAT
* *
8958688 TGGCGGCACTGGTGGTGTCATTCCCAT
1 TGGCGGCACCGGTGGTGCCATTCCCAT
8958715 TGGCGGCAC
1 TGGCGGCAC
8958724 AGGACTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.29, G:0.35, T:0.27
Consensus pattern (27 bp):
TGGCGGCACCGGTGGTGCCATTCCCAT
Found at i:8960571 original size:27 final size:27
Alignment explanation
Indices: 8960522--8960584 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
8960512 TTTTAGTCCT
* *
8960522 GTGCCGCCAATGGGAATGACACCACCG
1 GTGCCGCCAATGAGAAAGACACCACCG
* *
8960549 GTGTCGCCAATGAGAAAGGCACCACCG
1 GTGCCGCCAATGAGAAAGACACCACCG
8960576 GTGCCGCCA
1 GTGCCGCCA
8960585 TTCCATTACC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.25, C:0.33, G:0.30, T:0.11
Consensus pattern (27 bp):
GTGCCGCCAATGAGAAAGACACCACCG
Found at i:8962245 original size:20 final size:20
Alignment explanation
Indices: 8962222--8962259 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8962212 ATTTATAGAC
8962222 ATACATATATACATATATAT
1 ATACATATATACATATATAT
* *
8962242 ATACATATTTACGTATAT
1 ATACATATATACATATAT
8962260 CTTTGTTGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.42
Consensus pattern (20 bp):
ATACATATATACATATATAT
Found at i:8962249 original size:12 final size:12
Alignment explanation
Indices: 8962215--8962249 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
8962205 TTTTACAATT
* *
8962215 TATAGACATACA
1 TATATACATATA
8962227 TATATACATATA
1 TATATACATATA
8962239 TATATACATAT
1 TATATACATAT
8962250 TTACGTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.49, C:0.11, G:0.03, T:0.37
Consensus pattern (12 bp):
TATATACATATA
Found at i:8966374 original size:21 final size:21
Alignment explanation
Indices: 8966322--8966374 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
8966312 AATTAACCTC
*
8966322 TAAACCTTAAATCCCAATCCA
1 TAAACCTTAAATCCAAATCCA
* *
8966343 TAATCCCTAAA-CCAAACTCCA
1 TAAACCTTAAATCCAAA-TCCA
8966364 TAAACCTTAAA
1 TAAACCTTAAA
8966375 ATAGTAACTC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.23
Consensus pattern (21 bp):
TAAACCTTAAATCCAAATCCA
Found at i:8966551 original size:8 final size:8
Alignment explanation
Indices: 8966538--8966568 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
8966528 CCCTAACCTG
8966538 ATCCCTAA
1 ATCCCTAA
8966546 ATCCCTAA
1 ATCCCTAA
8966554 A-CCCTAA
1 ATCCCTAA
8966561 ATCCCTAA
1 ATCCCTAA
8966569 CTATTAACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.23
Consensus pattern (8 bp):
ATCCCTAA
Found at i:8966560 original size:15 final size:15
Alignment explanation
Indices: 8966540--8966568 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8966530 CTAACCTGAT
8966540 CCCTAAATCCCTAAA
1 CCCTAAATCCCTAAA
8966555 CCCTAAATCCCTAA
1 CCCTAAATCCCTAA
8966569 CTATTAACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (15 bp):
CCCTAAATCCCTAAA
Found at i:8967096 original size:41 final size:41
Alignment explanation
Indices: 8967034--8967272 Score: 268
Period size: 41 Copynumber: 5.8 Consensus size: 41
8967024 TAAAATATTT
* * *
8967034 TTAGCGGCACTTTTCTAAAAACGCCGCTAAAGCCCTTACCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTTAGCA
* * * * *
8967075 TTAGCTGCGCTTTTCCGAAAACGCCACTAAAGCCCCTACCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTTAGCA
* **
8967116 TTAGCGGCGCTTTTTCCAAAAACGCCACTAAAAACC--AGGCA
1 TTAGCGGCGC-TTTTCCAAAAACGCCGCTAAAGCCCTTA-GCA
** **
8967157 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAATACCTGGGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTTAGCA
* * *
8967198 TTAGCGGCGCTTTGCCAAAAACGCCGCTAAAG-ACTTGGGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTT-AGCA
8967239 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCC
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCC
8967273 ACGAAAGGTC
Statistics
Matches: 172, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
40 26 0.15
41 124 0.72
42 22 0.13
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.21
Consensus pattern (41 bp):
TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTTAGCA
Found at i:8969299 original size:28 final size:26
Alignment explanation
Indices: 8969268--8969333 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 26
8969258 TTTTTTTTTG
* *
8969268 AATTTTTATGAACTTTTTATATTTTTAA
1 AATTTTGATGAA-TTCTT-TATTTTTAA
* *
8969296 AATTTTGATGTATTCTTTATTTTTAT
1 AATTTTGATGAATTCTTTATTTTTAA
8969322 AA-TTT-ATGAATT
1 AATTTTGATGAATT
8969334 ATTTGTTCAC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
24 6 0.18
25 3 0.09
26 10 0.30
27 4 0.12
28 10 0.30
ACGTcount: A:0.30, C:0.03, G:0.06, T:0.61
Consensus pattern (26 bp):
AATTTTGATGAATTCTTTATTTTTAA
Found at i:8969301 original size:27 final size:25
Alignment explanation
Indices: 8969262--8969333 Score: 65
Period size: 27 Copynumber: 2.8 Consensus size: 25
8969252 ATACTATTTT
* * *
8969262 TTTTTGAATTTTTATGAACTTTTTATA
1 TTTTTAAAATTTTATGAA-TTCTT-TA
*
8969289 TTTTTAAAATTTTGATGTATTCTTTA
1 TTTTTAAAATTTT-ATGAATTCTTTA
*
8969315 TTTTTATAA-TTTATGAATT
1 TTTTTAAAATTTTATGAATT
8969334 ATTTGTTCAC
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
24 6 0.16
25 3 0.08
26 10 0.26
27 15 0.39
28 4 0.11
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (25 bp):
TTTTTAAAATTTTATGAATTCTTTA
Found at i:8969966 original size:16 final size:17
Alignment explanation
Indices: 8969935--8969973 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
8969925 ACATCATGTG
8969935 AAAAATTAAATGAAATA
1 AAAAATTAAATGAAATA
*
8969952 AAAAATT-AATTAAATA
1 AAAAATTAAATGAAATA
*
8969968 ACAAAT
1 AAAAAT
8969974 AACAAAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (17 bp):
AAAAATTAAATGAAATA
Found at i:8970501 original size:92 final size:94
Alignment explanation
Indices: 8970326--8970510 Score: 234
Period size: 92 Copynumber: 2.0 Consensus size: 94
8970316 TGTTAATTCT
* * * *
8970326 ATATACTATAATAAAACACATGTTGATAGTTCAAGTACTACATTATTAGACATTTTCAAAGTACA
1 ATATACCATAAGAAAACACATATTGAAAGTTCAAGTACTA-ATTATTAGACATTTTCAAAGTACA
* * *
8970391 AATGCTACATTGGGTATTTTACGAAAGTGC
65 AATGCTAAATTAGATATTTTACGAAAGTGC
*
8970421 ATATACCATAAGAAATCACATATTGAAAGTTCAAGTACT-A-TATTAGACATTTTCAAAGTACAT
1 ATATACCATAAGAAAACACATATTGAAAGTTCAAGTACTAATTATTAGACATTTTCAAAGTACA-
*
8970484 ATAT-C-AAATTAGATATTTTATGAAAGT
65 A-ATGCTAAATTAGATATTTTACGAAAGT
8970511 ATGTGTATCA
Statistics
Matches: 79, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
92 40 0.51
93 3 0.04
94 2 0.03
95 34 0.43
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (94 bp):
ATATACCATAAGAAAACACATATTGAAAGTTCAAGTACTAATTATTAGACATTTTCAAAGTACAA
ATGCTAAATTAGATATTTTACGAAAGTGC
Found at i:8970536 original size:92 final size:94
Alignment explanation
Indices: 8970326--8970551 Score: 230
Period size: 92 Copynumber: 2.4 Consensus size: 94
8970316 TGTTAATTCT
* * *
8970326 ATATACTATAATAAAACACATGTTGATAGTTCAAGTACTACATTATTAGACATTTTCAAAGTACA
1 ATATACCATAATAAAACACATATTGAAAGTTCAAGTACTA-ATTATTAGACATTTTCAAAGTACA
* * * *
8970391 AATGCTACATTGGGTATTTTACGAAAGTGC
65 AATGCTAAATTAGATATTTTACGAAAGTAC
* *
8970421 ATATACCATAAGAAATCACATATTGAAAGTTCAAGTACT-A-TATTAGACATTTTCAAAGTACAT
1 ATATACCATAATAAAACACATATTGAAAGTTCAAGTACTAATTATTAGACATTTTCAAAGTACA-
* *
8970484 ATAT-C-AAATTAGATATTTTATGAAAGTAT
65 A-ATGCTAAATTAGATATTTTACGAAAGTAC
* * *
8970513 GTGTATCATAATAAAACTA-ATATT-AATAGTTCAAAGTAC
1 ATATACCATAATAAAAC-ACATATTGAA-AGTTC-AAGTAC
8970552 ATGTACTACA
Statistics
Matches: 110, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
91 2 0.02
92 62 0.56
93 10 0.09
94 2 0.02
95 34 0.31
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (94 bp):
ATATACCATAATAAAACACATATTGAAAGTTCAAGTACTAATTATTAGACATTTTCAAAGTACAA
ATGCTAAATTAGATATTTTACGAAAGTAC
Found at i:8971885 original size:15 final size:16
Alignment explanation
Indices: 8971866--8971903 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
8971856 TTGTGATTTA
8971866 ATTTTT-AT-ATTTTT
1 ATTTTTAATGATTTTT
8971880 ATTTTTAATGATTTTAT
1 ATTTTTAATGATTTT-T
8971897 ATTTTTA
1 ATTTTTA
8971904 TAAGAGGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
15 2 0.10
16 5 0.24
17 8 0.38
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (16 bp):
ATTTTTAATGATTTTT
Found at i:8981595 original size:54 final size:54
Alignment explanation
Indices: 8981537--8981688 Score: 153
Period size: 54 Copynumber: 2.8 Consensus size: 54
8981527 GTCTCAACAG
*
8981537 ATTATCCCGTGTTTAATGTCTAGTTAGACTATCTTGTGTTTAACATCTCGTCGA
1 ATTATCCCGTGTTTAATGTCTAGTTAGACTATCTTGTGTTTAACATCTCATCGA
* * ** *
8981591 ATTATCCAGTGTTCAATGTCCTA-TTAGTTTATCTCGTGTTTAACATCTCATCGA
1 ATTATCCCGTGTTTAATGT-CTAGTTAGACTATCTTGTGTTTAACATCTCATCGA
* * * ** ** * *
8981645 ACTATCTCATGTTTAACATCCCGTTGGACTATCCTGTGTTTAAC
1 ATTATCCCGTGTTTAATGTCTAGTTAGACTATCTTGTGTTTAAC
8981689 TTCCCGTTAA
Statistics
Matches: 76, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
53 1 0.01
54 72 0.95
55 3 0.04
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.41
Consensus pattern (54 bp):
ATTATCCCGTGTTTAATGTCTAGTTAGACTATCTTGTGTTTAACATCTCATCGA
Found at i:8981675 original size:27 final size:27
Alignment explanation
Indices: 8981620--8981732 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 27
8981610 CCTATTAGTT
* * * *
8981620 TATCTCGTGTTTAACATCTCATCGAAC
1 TATCTCATGTTTAACATCCCGTTGAAC
*
8981647 TATCTCATGTTTAACATCCCGTTGGAC
1 TATCTCATGTTTAACATCCCGTTGAAC
* * *
8981674 TATC-CTGTGTTTAACTTCCCGTTAAAC
1 TATCTC-ATGTTTAACATCCCGTTGAAC
* * *
8981701 TATCTCATATTTAACATCCCATTAAAC
1 TATCTCATGTTTAACATCCCGTTGAAC
8981728 TATCT
1 TATCT
8981733 ATGATGTCGT
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 69 0.97
28 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.09, T:0.39
Consensus pattern (27 bp):
TATCTCATGTTTAACATCCCGTTGAAC
Done.