Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 33 of 230
Found at i:8981861 original size:45 final size:45
Alignment explanation
Indices: 8981810--8981938 Score: 143
Period size: 45 Copynumber: 2.9 Consensus size: 45
8981800 ACTATCAAAG
* * *
8981810 GATGCCATAATGTCTTTCAACCATCGTTTTACTCATTTTCA-TCAT
1 GATGCCATAGTGTCTTTCAACTATGGTTTTACTCATTTTCATTC-T
** * * * *
8981855 GATGCCATAGCATCTTTCAGCTATGGTCTTACTAATTTCCATTCT
1 GATGCCATAGTGTCTTTCAACTATGGTTTTACTCATTTTCATTCT
* *
8981900 GATGCTATAGTGCCTTTCAACTATGGTTTTACTCATTTT
1 GATGCCATAGTGTCTTTCAACTATGGTTTTACTCATTTT
8981939 AGGCTTATAG
Statistics
Matches: 66, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
45 64 0.97
46 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.43
Consensus pattern (45 bp):
GATGCCATAGTGTCTTTCAACTATGGTTTTACTCATTTTCATTCT
Found at i:8985612 original size:23 final size:23
Alignment explanation
Indices: 8985585--8985639 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
8985575 AAACTTATCC
8985585 TCTCTCAAATTTCC-TCTC-AATT
1 TCTCTCAAATTTCCTTC-CAAATT
8985607 TGCTCTCAAA-TTCCTTCCAAATT
1 T-CTCTCAAATTTCCTTCCAAATT
8985630 TCTCTCAAAT
1 TCTCTCAAAT
8985640 CCATATTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
22 14 0.48
23 15 0.52
ACGTcount: A:0.25, C:0.31, G:0.02, T:0.42
Consensus pattern (23 bp):
TCTCTCAAATTTCCTTCCAAATT
Found at i:8985634 original size:22 final size:21
Alignment explanation
Indices: 8985585--8985639 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 21
8985575 AAACTTATCC
8985585 TCTCTCAAATTTCCTCTCAATT
1 TCTCTCAAA-TTCCTCTCAATT
8985607 TGCTCTCAAATTCCT-TCCAAATT
1 T-CTCTCAAATTCCTCT-C-AATT
8985630 TCTCTCAAAT
1 TCTCTCAAAT
8985640 CCATATTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
21 1 0.03
22 16 0.53
23 13 0.43
ACGTcount: A:0.25, C:0.31, G:0.02, T:0.42
Consensus pattern (21 bp):
TCTCTCAAATTCCTCTCAATT
Found at i:8985638 original size:11 final size:11
Alignment explanation
Indices: 8985585--8985639 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
8985575 AAACTTATCC
8985585 TCTCTCAAATT
1 TCTCTCAAATT
8985596 TCCTCTC-AATT
1 T-CTCTCAAATT
8985607 TGCTCTCAAATT
1 T-CTCTCAAATT
*
8985619 CCT-TCCAAATT
1 TCTCT-CAAATT
8985630 TCTCTCAAAT
1 TCTCTCAAAT
8985640 CCATATTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
10 1 0.03
11 26 0.70
12 10 0.27
ACGTcount: A:0.25, C:0.31, G:0.02, T:0.42
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:8986102 original size:39 final size:41
Alignment explanation
Indices: 8986000--8986102 Score: 142
Period size: 40 Copynumber: 2.6 Consensus size: 41
8985990 AAAATGCTGG
8986000 TAAAAATAGAGCATTAGCGGCG-TTTTAAGAAAATCGCCAC
1 TAAAAATAGAGCATTAGCGGCGTTTTTAAGAAAATCGCCAC
* * *
8986040 TAAAGATCGAGCATTAGCGGCGTTTTTCAA-AAAA-CGCCGC
1 TAAAAATAGAGCATTAGCGGCGTTTTT-AAGAAAATCGCCAC
8986080 TAAAAAT-GAGCATTAGCGGCGTT
1 TAAAAATAGAGCATTAGCGGCGTT
8986103 AACCAAAGCC
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
39 16 0.28
40 31 0.54
41 8 0.14
42 2 0.04
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.23
Consensus pattern (41 bp):
TAAAAATAGAGCATTAGCGGCGTTTTTAAGAAAATCGCCAC
Found at i:8986193 original size:41 final size:40
Alignment explanation
Indices: 8986136--8986296 Score: 205
Period size: 41 Copynumber: 3.9 Consensus size: 40
8986126 TTCTTACCTT
* * *
8986136 TGGGGGCTTTAGCGGCGTTTTCGTAAAAGCGCTGCTAATGC
1 TGGGGTCTTTAGCGGCGTTTTTG-AAAAGCGCCGCTAATGC
* * *
8986177 TGGGGTTTTTAGCGGCGTCTTTGGAAAAGCGCCGGTAATGC
1 TGGGGTCTTTAGCGGCGT-TTTTGAAAAGCGCCGCTAATGC
* * *
8986218 TGGTGTCTTTAGCGGCGTTTTTGAGAAAGCGCCACTAATGT
1 TGGGGTCTTTAGCGGCGTTTTTGA-AAAGCGCCGCTAATGC
8986259 TGGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
1 TGGGGTCTTTAGCGGCGTTTTTG-AAAAGCGCCGCTAA
8986297 AAATATTTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
40 5 0.05
41 94 0.90
42 5 0.05
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.30
Consensus pattern (40 bp):
TGGGGTCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGC
Found at i:8988682 original size:3 final size:3
Alignment explanation
Indices: 8988676--8988706 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
8988666 GAGATGATGT
8988676 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8988707 GATTTGCCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8989486 original size:24 final size:24
Alignment explanation
Indices: 8989454--8989507 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
8989444 GGGAAAAGTA
* *
8989454 AGTTC-TTTCTGTATGTGTTGAAC
1 AGTTCATTTCTGCATGTATTGAAC
* *
8989477 GGTTCATTTCTGCATGTATTTAAC
1 AGTTCATTTCTGCATGTATTGAAC
8989501 AGTTCAT
1 AGTTCAT
8989508 CTTTCATCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.46
Consensus pattern (24 bp):
AGTTCATTTCTGCATGTATTGAAC
Found at i:8990762 original size:43 final size:43
Alignment explanation
Indices: 8990701--8990837 Score: 238
Period size: 43 Copynumber: 3.2 Consensus size: 43
8990691 AAGTTATATT
* *
8990701 TTTAGCGGCGTTTATGGGAAAAGTGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
8990744 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
* *
8990787 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
8990830 TTTAGCGG
1 TTTAGCGG
8990838 TGTTATTTTC
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.21, C:0.18, G:0.34, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:8991735 original size:20 final size:20
Alignment explanation
Indices: 8991703--8991740 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8991693 TAACGAGGTA
8991703 AATTTTATATTAGATTTTAT
1 AATTTTATATTAGATTTTAT
8991723 AATTATTAT-TTAGATTTT
1 AATT-TTATATTAGATTTT
8991741 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
AATTTTATATTAGATTTTAT
Found at i:8991923 original size:7 final size:7
Alignment explanation
Indices: 8991911--8991935 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8991901 AGTTGATTGC
8991911 TATTTAG
1 TATTTAG
8991918 TATTTAG
1 TATTTAG
8991925 TATTTAG
1 TATTTAG
8991932 TATT
1 TATT
8991936 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:8993104 original size:45 final size:45
Alignment explanation
Indices: 8993017--8993104 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
8993007 ATATTTTGAA
* *
8993017 TATTTTGATATTATTTTATGTAATAAAATAATAAATTTTTTGAGT
1 TATTTTGATATTATTTGATGTAATAAAATAAGAAATTTTTTGAGT
*
8993062 TATTTTGATATTATTTGATGTAATAAAAT-AGAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAATAAAATAAGAAATTT-TTTGA
8993105 TGTAATAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
44 6 0.15
45 33 0.85
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (45 bp):
TATTTTGATATTATTTGATGTAATAAAATAAGAAATTTTTTGAGT
Found at i:8993106 original size:25 final size:25
Alignment explanation
Indices: 8993072--8993119 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
8993062 TATTTTGATA
8993072 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
8993097 TTATTTGATGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
8993120 ATTTTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:8993108 original size:70 final size:70
Alignment explanation
Indices: 8993027--8993157 Score: 219
Period size: 70 Copynumber: 1.9 Consensus size: 70
8993017 TATTTTGATA
*
8993027 TTATTTTATGTAATAAAATA-ATAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAAT
1 TTATTTGATGTAATAAAATAGA-AAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAAT
8993091 AGAAGT
65 AGAAGT
* *
8993097 TTATTTGATGTAATAAAATAGAAATTTTTTTTAGTTATTTTGATATTATTTGATGTAATAA
1 TTATTTGATGTAATAAAATAGAAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAA
8993158 CATGAGATTA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
70 56 0.98
71 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.50
Consensus pattern (70 bp):
TTATTTGATGTAATAAAATAGAAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
GAAGT
Found at i:8996459 original size:30 final size:30
Alignment explanation
Indices: 8996423--8996479 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
8996413 CCGAGCCTTG
*
8996423 GGGCAAAAATGTAATTATGTAAAAGTTTAT
1 GGGCAAAAATGTAATTATGAAAAAGTTTAT
* *
8996453 GGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGCAAAAATGTAATTATGAAAAAGTT
8996480 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.21, T:0.33
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGAAAAAGTTTAT
Found at i:8999320 original size:124 final size:124
Alignment explanation
Indices: 8999012--8999387 Score: 540
Period size: 125 Copynumber: 3.0 Consensus size: 124
8999002 CCCAAACATG
* * * *
8999012 CTACTGTAGCAAAAGCGCGTCCACGTGGGTGCAATTTCATAAATTCTTCTCATAAAGCATCATGG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAAAGCATCAT-G
*
8999077 TAGAAGCGATTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
65 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* * * * * *
8999137 CAACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTAGAAATTCTTCTGA-AATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAA-AGCATCATG
* * * *
8999201 CTTGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTT-TTTCAGGAC
65 -TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
*
8999261 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAAAGCATCTTGT
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAAAGCATCATGT
* * *
8999326 AAAAGCGATTTTATACTATTTGCTCAGAAATGCCAACTCGAAATTATTTCTTCCAGGAC
66 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
8999385 CTA
1 CTA
8999388 AAAATCCTAA
Statistics
Matches: 221, Mismatches: 26, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
123 44 0.20
124 77 0.35
125 100 0.45
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAAAGCATCATGT
AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
Found at i:9024636 original size:109 final size:107
Alignment explanation
Indices: 9024344--9024662 Score: 336
Period size: 109 Copynumber: 2.9 Consensus size: 107
9024334 AAAGGAAAGT
* * * * * * *
9024344 TTTTCTAAATGAGGCAATATTTAACGTTTAGAAATTCGAGAAAACGTGCCCTAGTGTGCTGGGTT
1 TTTTCAAAATAAGACAATATTT-TCGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTT
* * * * *
9024409 TCGATTTTCTCGTTCAACCAAATAACTAAGTATCCTTTTAAAA
65 TCGATTTTCTCATTCAACCAAATAGCCAAATATCCTTTAAAAA
* * * * * *
9024452 TTTTTAAAATAAGGCAATGTTTTCGTTTGGAAATTCGAGGAAACGCGCCTTAATCTGCTGGGTTT
1 TTTTCAAAATAAGACAATATTTTCGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTT
9024517 CGAATTTTTCTCATTCAACCAAATAGCCAAATATCCTTTCAAAAAAA
66 CG-A-TTTTCTCATTCAACCAAATAGCCAAATATCCTTT---AAAAA
* * * * *
9024564 TTTTCAAAGTAAGACTATATTTTGCGTTTGGAAATTTGAGG-AATGTGCCCTAATGTGCGGGGTT
1 TTTTCAAAATAAGACAATATTTT-CGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTT
* *
9024628 TCGA-TTTCTCATTTAACCAAATAGTCAAATATCCT
65 TCGATTTTCTCATTCAACCAAATAGCCAAATATCCT
9024663 CTTGAATTTT
Statistics
Matches: 176, Mismatches: 29, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
107 38 0.22
108 19 0.11
109 59 0.34
111 1 0.01
112 43 0.24
113 16 0.09
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (107 bp):
TTTTCAAAATAAGACAATATTTTCGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTT
CGATTTTCTCATTCAACCAAATAGCCAAATATCCTTTAAAAA
Found at i:9047948 original size:6 final size:6
Alignment explanation
Indices: 9047934--9047969 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
9047924 AATATATCGC
* *
9047934 AATAAA AATAGA AATAGA AATAAA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
9047970 GAACACACAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:9053091 original size:39 final size:39
Alignment explanation
Indices: 9053037--9053115 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
9053027 AAGATAAAAA
*
9053037 ACTTAAATTTGAAAAATCATTTTTATTTAATTATAATAT
1 ACTTAAATTTCAAAAATCATTTTTATTTAATTATAATAT
9053076 ACTTAAATTTCAAAAATCATTTTTATTTAATTATAATAT
1 ACTTAAATTTCAAAAATCATTTTTATTTAATTATAATAT
9053115 A
1 A
9053116 TACTTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.48
Consensus pattern (39 bp):
ACTTAAATTTCAAAAATCATTTTTATTTAATTATAATAT
Found at i:9053683 original size:21 final size:19
Alignment explanation
Indices: 9053646--9053684 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
9053636 AGAAGGAAAA
9053646 CGGTGAACATATATTTTTT
1 CGGTGAACATATATTTTTT
9053665 CGGTGAACATATATTTTTT
1 CGGTGAACATATATTTTTT
9053684 C
1 C
9053685 TTTTTCCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (19 bp):
CGGTGAACATATATTTTTT
Found at i:9055373 original size:26 final size:26
Alignment explanation
Indices: 9055325--9055385 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
9055315 TTTTACTCCA
* * *
9055325 GTAAAATTTTGATGATTTGACCCTAG
1 GTAAAATTTTAACGATTTGACCCCAG
*
9055351 GTAAAATTTTAACGATCTT-ACCCCCG
1 GTAAAATTTTAACGAT-TTGACCCCAG
9055377 GTAAAATTT
1 GTAAAATTT
9055386 CGAGAAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 28 0.93
27 2 0.07
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (26 bp):
GTAAAATTTTAACGATTTGACCCCAG
Found at i:9057189 original size:22 final size:22
Alignment explanation
Indices: 9057141--9057190 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
9057131 ATCACATTAC
9057141 ACATATATCACATAACATTTAA
1 ACATATATCACATAACATTTAA
*
9057163 GCATATATCACA-ATAC-TTATAA
1 ACATATATCACATA-ACATT-TAA
9057185 ACATAT
1 ACATAT
9057191 TTCTAGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.32
Consensus pattern (22 bp):
ACATATATCACATAACATTTAA
Found at i:9059604 original size:37 final size:37
Alignment explanation
Indices: 9059522--9059604 Score: 87
Period size: 37 Copynumber: 2.3 Consensus size: 37
9059512 TAGCCATGGG
* *
9059522 CATAC-TCAAGTTATGACGATCCGTTGGACTTGTCAT
1 CATACTTCAAGTTATGACGATCCATTGAACTTGTCAT
** * * * *
9059558 CATGTTTCAAGTTATTACGGTCTATTGAACTTGTCCT
1 CATACTTCAAGTTATGACGATCCATTGAACTTGTCAT
9059595 CATACTTCAA
1 CATACTTCAA
9059605 ATTAAGACAA
Statistics
Matches: 36, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
36 3 0.08
37 33 0.92
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CATACTTCAAGTTATGACGATCCATTGAACTTGTCAT
Found at i:9059807 original size:42 final size:42
Alignment explanation
Indices: 9059729--9059810 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
9059719 GCAGGCATGA
* *
9059729 ATCTGTATCTATGAATCCATATATAAGAATATGTACTTATGT
1 ATCTGTATCTATGAATCCACATATAAGAATACGTACTTATGT
* * * *
9059771 ATCTGTATTTATGAATCCACATATATGATTCCGTACTTAT
1 ATCTGTATCTATGAATCCACATATAAGAATACGTACTTAT
9059811 AAATCCATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (42 bp):
ATCTGTATCTATGAATCCACATATAAGAATACGTACTTATGT
Found at i:9059810 original size:28 final size:28
Alignment explanation
Indices: 9059779--9059880 Score: 89
Period size: 28 Copynumber: 3.6 Consensus size: 28
9059769 GTATCTGTAT
* *
9059779 TTATGAATCCACATATATGATTCCGTAC
1 TTATAAATCCACATATATGAATCCGTAC
* *
9059807 TTATAAATCCATATATATGAATCTGTA-
1 TTATAAATCCACATATATGAATCCGTAC
** * * *
9059834 TCTAGGAGTCCGCATATATGAATCAGTAC
1 T-TATAAATCCACATATATGAATCCGTAC
* *
9059863 TTATAAATCAATATATAT
1 TTATAAATCCACATATAT
9059881 AATTTCGTAT
Statistics
Matches: 56, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
27 1 0.02
28 54 0.96
29 1 0.02
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (28 bp):
TTATAAATCCACATATATGAATCCGTAC
Found at i:9059831 original size:56 final size:56
Alignment explanation
Indices: 9059766--9059894 Score: 161
Period size: 56 Copynumber: 2.3 Consensus size: 56
9059756 AATATGTACT
* * * *
9059766 TATGTATCTGTATTTATGAATCCACATATATGATTCCGTACTTATAAATCCATATA
1 TATGAATCTGTATTTATGAATCCACATATATGAATCAGTACTTATAAATCAATATA
* * * *
9059822 TATGAATCTGTATCTAGGAGTCCGCATATATGAATCAGTACTTATAAATCAATATA
1 TATGAATCTGTATTTATGAATCCACATATATGAATCAGTACTTATAAATCAATATA
*
9059878 TAT-AATTTCGTATTTAT
1 TATGAATCT-GTATTTAT
9059895 AATTTTGCAT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 4 0.07
56 57 0.93
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (56 bp):
TATGAATCTGTATTTATGAATCCACATATATGAATCAGTACTTATAAATCAATATA
Found at i:9059895 original size:14 final size:14
Alignment explanation
Indices: 9059874--9059923 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
9059864 TATAAATCAA
9059874 TATATATAATTTCG
1 TATATATAATTTCG
* *
9059888 TATTTATAATTTTG
1 TATATATAATTTCG
* *
9059902 CATATATGATTTCG
1 TATATATAATTTCG
*
9059916 TATCTATA
1 TATATATA
9059924 GTTCTGCATA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (14 bp):
TATATATAATTTCG
Found at i:9059939 original size:28 final size:28
Alignment explanation
Indices: 9059875--9059940 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
9059865 ATAAATCAAT
* * *
9059875 ATATATAATTTCGTATTTATAATTTTGC
1 ATATATGATTTCGTATCTATAATTCTGC
*
9059903 ATATATGATTTCGTATCTATAGTTCTGC
1 ATATATGATTTCGTATCTATAATTCTGC
*
9059931 ATATGTGATT
1 ATATATGATT
9059941 CTGCATCCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50
Consensus pattern (28 bp):
ATATATGATTTCGTATCTATAATTCTGC
Found at i:9061126 original size:17 final size:17
Alignment explanation
Indices: 9061100--9061140 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
9061090 ATATATATAA
9061100 TTTATCATTT-TAAATAT
1 TTTATCATTTATAAA-AT
*
9061117 TTTATTATTTATAAAA-
1 TTTATCATTTATAAAAT
9061133 TTTATCAT
1 TTTATCAT
9061141 AAAAGCTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 7 0.33
17 10 0.48
18 4 0.19
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTATCATTTATAAAAT
Found at i:9064852 original size:25 final size:25
Alignment explanation
Indices: 9064824--9064873 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
9064814 TGTAAAAGTA
9064824 AAAAAAAATTTGTTAAAATAATAGC
1 AAAAAAAATTTGTTAAAATAATAGC
***
9064849 AAAAATTTTTTGTTAAAATAATAGC
1 AAAAAAAATTTGTTAAAATAATAGC
9064874 TTAACTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.34
Consensus pattern (25 bp):
AAAAAAAATTTGTTAAAATAATAGC
Found at i:9069419 original size:30 final size:30
Alignment explanation
Indices: 9069385--9069456 Score: 126
Period size: 30 Copynumber: 2.4 Consensus size: 30
9069375 TTTTATAAGG
*
9069385 CTCAATTGATTGCTAATTTTTAATTAACAA
1 CTCAATTAATTGCTAATTTTTAATTAACAA
*
9069415 CTCAATTAATTGCTAATTTTTAATTAAGAA
1 CTCAATTAATTGCTAATTTTTAATTAACAA
9069445 CTCAATTAATTG
1 CTCAATTAATTG
9069457 ATTGCCCCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (30 bp):
CTCAATTAATTGCTAATTTTTAATTAACAA
Found at i:9072442 original size:22 final size:22
Alignment explanation
Indices: 9072417--9072469 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
9072407 TGAATAATGA
9072417 TGAAATGTTGAATTAAGTGAAT
1 TGAAATGTTGAATTAAGTGAAT
9072439 TGAAATGTTGAATTAAGTGAAT
1 TGAAATGTTGAATTAAGTGAAT
9072461 TGAAATGTT
1 TGAAATGTT
9072470 ATATGATTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.38
Consensus pattern (22 bp):
TGAAATGTTGAATTAAGTGAAT
Found at i:9076190 original size:5 final size:5
Alignment explanation
Indices: 9076180--9076214 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
9076170 GAGACGAGGG
9076180 CATAT CATAT CATAT CATAT CATAT CATAT CATAT
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT
9076215 TGGTAGCCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
CATAT
Found at i:9077732 original size:15 final size:15
Alignment explanation
Indices: 9077712--9077744 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
9077702 TTTGACATCC
9077712 GTGCCCAACTCATAT
1 GTGCCCAACTCATAT
9077727 GTGCCCAACTCATAT
1 GTGCCCAACTCATAT
9077742 GTG
1 GTG
9077745 GACGGACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (15 bp):
GTGCCCAACTCATAT
Found at i:9084980 original size:71 final size:71
Alignment explanation
Indices: 9084895--9085080 Score: 214
Period size: 71 Copynumber: 2.6 Consensus size: 71
9084885 TTTTTGACAA
* *
9084895 CTTGAGTAAGCAGCATCGAATTATATTTTACTGATGACTGAGA-TCTAACATAAGTTGCGGGTTC
1 CTTGAGTAAGCAGCATCGAATTATATTTTACTGATGACTGAGATTC-AACATAAGTTGCAGATTC
9084959 TCAACAG
65 TCAACAG
* * ** *
9084966 TTTGAGTCAGCAGCATCGAATTATATTTTAAC-GATGACTGAGATTCGGCATAAGTTGCATATTC
1 CTTGAGTAAGCAGCATCGAATTATATTTT-ACTGATGACTGAGATTCAACATAAGTTGCAGATTC
*
9085030 TCGACAG
65 TCAACAG
* * * * * *
9085037 CTTGAGTGAGCAACACCGAATTATACTTTATTGATGGCTGAGAT
1 CTTGAGTAAGCAGCATCGAATTATATTTTACTGATGACTGAGAT
9085081 GTAGCACATG
Statistics
Matches: 97, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
70 1 0.01
71 92 0.95
72 4 0.04
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32
Consensus pattern (71 bp):
CTTGAGTAAGCAGCATCGAATTATATTTTACTGATGACTGAGATTCAACATAAGTTGCAGATTCT
CAACAG
Found at i:9086527 original size:73 final size:72
Alignment explanation
Indices: 9086436--9086579 Score: 261
Period size: 73 Copynumber: 2.0 Consensus size: 72
9086426 AAGTTACCTA
9086436 AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACAAAAAAAAAC
1 AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAAC-AAAAAAAAC
*
9086501 ATTCCATG
65 ATACCATG
*
9086509 AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACCAAAAAAACA
1 AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACAAAAAAAACA
9086574 TACCAT
66 TACCAT
9086580 TTCCATCACA
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
72 14 0.20
73 55 0.80
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (72 bp):
AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACAAAAAAAACA
TACCATG
Found at i:9088370 original size:13 final size:13
Alignment explanation
Indices: 9088352--9088446 Score: 52
Period size: 13 Copynumber: 7.2 Consensus size: 13
9088342 TATCAATATC
*
9088352 CATATAAATATTT
1 CATATAAACATTT
9088365 CATATAGACACA-TT
1 CATATA-A-ACATTT
*
9088379 -ATATAACCATTT
1 CATATAAACATTT
**
9088391 CATAT-GTCTATTTT
1 CATATAAAC-A-TTT
* *
9088405 CATAAAAATATTT
1 CATATAAACATTT
* *
9088418 CGTATAACCATTT
1 CATATAAACATTT
*
9088431 CATCTAAACATTT
1 CATATAAACATTT
9088444 CAT
1 CAT
9088447 TTTACCATTT
Statistics
Matches: 60, Mismatches: 15, Indels: 14
0.67 0.17 0.16
Matches are distributed among these distances:
11 2 0.03
12 4 0.07
13 41 0.68
14 11 0.18
15 2 0.03
ACGTcount: A:0.39, C:0.17, G:0.03, T:0.41
Consensus pattern (13 bp):
CATATAAACATTT
Found at i:9093413 original size:3 final size:3
Alignment explanation
Indices: 9093405--9093429 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
9093395 ACAATTTAAT
9093405 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
9093430 CATTTCTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:9104836 original size:34 final size:34
Alignment explanation
Indices: 9104793--9104858 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
9104783 AGTAAAATAT
*
9104793 TTTTCGTAAAATGATTT-CGGGAAAATGTTTTAC
1 TTTTCGTAAAATGATTTACGGGAAAATATTTTAC
* *
9104826 TTTTCTGTAAAATTATTTACTGGAAAATATTTT
1 TTTTC-GTAAAATGATTTACGGGAAAATATTTT
9104859 CTGGTGTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 5 0.18
34 11 0.39
35 12 0.43
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.47
Consensus pattern (34 bp):
TTTTCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:9115159 original size:17 final size:17
Alignment explanation
Indices: 9115124--9115159 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
9115114 CGCAAACTAG
*
9115124 AGGAAAAAGAAAATAAA
1 AGGAAAAAGAAAAGAAA
*
9115141 AGGAAAAAGAAAAGCAA
1 AGGAAAAAGAAAAGAAA
9115158 AG
1 AG
9115160 CAAAGTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.72, C:0.03, G:0.22, T:0.03
Consensus pattern (17 bp):
AGGAAAAAGAAAAGAAA
Found at i:9117402 original size:38 final size:40
Alignment explanation
Indices: 9117324--9117402 Score: 99
Period size: 38 Copynumber: 2.0 Consensus size: 40
9117314 CCAGTATCTG
* *
9117324 TTTAATATGATATAATATATACTCAAATTTTCATTTTTTA
1 TTTAATATGATAAAATATATACTCAAATATTCATTTTTTA
* * *
9117364 TTTAATATGGTAAAAT-TATA-TGAAATATTGATTTTTTA
1 TTTAATATGATAAAATATATACTCAAATATTCATTTTTTA
9117402 T
1 T
9117403 AGGAAAATTC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
38 16 0.47
39 4 0.12
40 14 0.41
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (40 bp):
TTTAATATGATAAAATATATACTCAAATATTCATTTTTTA
Found at i:9122593 original size:16 final size:14
Alignment explanation
Indices: 9122572--9122605 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
9122562 CTAAAACTAT
9122572 AAAAAATAAAATACAA
1 AAAAAAT-AAATA-AA
9122588 AAAAAATAAATAAA
1 AAAAAATAAATAAA
9122602 AAAA
1 AAAA
9122606 TTGCGCAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 5 0.28
16 7 0.39
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAAAATAAATAAA
Found at i:9122812 original size:16 final size:17
Alignment explanation
Indices: 9122791--9122828 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
9122781 GAGTTATTTG
*
9122791 AAAATAACTAAAAGA-T
1 AAAATAACTAAAAAATT
9122807 AAAAT-ACTAAAAAATT
1 AAAATAACTAAAAAATT
9122823 AAAATA
1 AAAATA
9122829 TTATCCTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.71, C:0.05, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAATAACTAAAAAATT
Found at i:9122969 original size:58 final size:57
Alignment explanation
Indices: 9122897--9123034 Score: 141
Period size: 58 Copynumber: 2.4 Consensus size: 57
9122887 TTATGGGTTT
* *
9122897 TTTACAAAAATATTATAAAAAAATAAAAATTTACCAAAATATTACAACTTTTTTTTTA
1 TTTACCAAAATATTAAAAAAAAATAAAAATTTACCAAAATATTACAAC-TTTTTTTTA
* ***** **** *
9122955 TTTACCAAAATATTACAACTTTTTTTTTATTTACTAAAATATTACAACTTTTTTTTA
1 TTTACCAAAATATTAAAAAAAAATAAAAATTTACCAAAATATTACAACTTTTTTTTA
*
9123012 TTTACCAAAATATAAAAAAAAAA
1 TTTACCAAAATATTAAAAAAAAA
9123035 CCAAAAAACA
Statistics
Matches: 61, Mismatches: 19, Indels: 1
0.75 0.23 0.01
Matches are distributed among these distances:
57 25 0.41
58 36 0.59
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (57 bp):
TTTACCAAAATATTAAAAAAAAATAAAAATTTACCAAAATATTACAACTTTTTTTTA
Found at i:9123006 original size:28 final size:29
Alignment explanation
Indices: 9122925--9123024 Score: 184
Period size: 29 Copynumber: 3.5 Consensus size: 29
9122915 AAAAATAAAA
9122925 ATTTACCAAAATATTACAACTTTTTTTTT
1 ATTTACCAAAATATTACAACTTTTTTTTT
9122954 ATTTACCAAAATATTACAACTTTTTTTTT
1 ATTTACCAAAATATTACAACTTTTTTTTT
*
9122983 ATTTACTAAAATATTACAAC-TTTTTTTT
1 ATTTACCAAAATATTACAACTTTTTTTTT
9123011 ATTTACCAAAATAT
1 ATTTACCAAAATAT
9123025 AAAAAAAAAA
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
28 21 0.30
29 48 0.70
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (29 bp):
ATTTACCAAAATATTACAACTTTTTTTTT
Found at i:9123039 original size:19 final size:19
Alignment explanation
Indices: 9123015--9123053 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
9123005 TTTTTTATTT
* *
9123015 ACCAAAATATAAAAAAAAA
1 ACCAAAAAACAAAAAAAAA
9123034 ACCAAAAAACAAAAAAAAA
1 ACCAAAAAACAAAAAAAAA
9123053 A
1 A
9123054 TCTAACACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.82, C:0.13, G:0.00, T:0.05
Consensus pattern (19 bp):
ACCAAAAAACAAAAAAAAA
Found at i:9123137 original size:26 final size:27
Alignment explanation
Indices: 9123087--9123137 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
9123077 GCGGCACCTA
*
9123087 ATTGGTGGCACCATTGGTGCCAAAGTC
1 ATTGGCGGCACCATTGGTGCCAAAGTC
9123114 ATTGGCGGCACCA-TGGTGCCAAAG
1 ATTGGCGGCACCATTGGTGCCAAAG
9123138 GAAAAAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.22
Consensus pattern (27 bp):
ATTGGCGGCACCATTGGTGCCAAAGTC
Found at i:9123246 original size:18 final size:19
Alignment explanation
Indices: 9123209--9123247 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9123199 TCAAGTCATT
* *
9123209 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACACTA
9123228 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACACTA
9123246 TT
1 TT
9123248 AAGTAATACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTAATTTAATAACACTA
Found at i:9123865 original size:37 final size:37
Alignment explanation
Indices: 9123823--9123893 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
9123813 AGTATTACTT
9123823 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
9123860 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
9123894 AAAAAAATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.39
Consensus pattern (37 bp):
AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
Found at i:9123898 original size:19 final size:19
Alignment explanation
Indices: 9123829--9123897 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
9123819 ACTTAATAGT
9123829 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
* * *
9123848 TTATTAAATGAGAATAG-T
1 TTATTAAATTAAAATAGAG
9123866 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
9123885 TTATTAAA-TAAAA
1 TTATTAAATTAAAA
9123898 AAATGAGTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
18 20 0.47
19 23 0.53
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (19 bp):
TTATTAAATTAAAATAGAG
Found at i:9124028 original size:27 final size:26
Alignment explanation
Indices: 9123972--9124057 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
9123962 TTTTTTTTCC
*
9123972 TTTGGCACCATGGTGCCGCCAA-TGA
1 TTTGGCACCATGGTGCCGCCAATTTA
*
9123997 CTTTGGCACCAATGGTGCCACCAATTTA
1 -TTTGGCACC-ATGGTGCCGCCAATTTA
* *
9124025 TTTGGCACCTTTGGTACCGCCAATTTA
1 TTTGGCACC-ATGGTGCCGCCAATTTA
*
9124052 ATTGGC
1 TTTGGC
9124058 TGGTGTCAGG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 9 0.18
27 40 0.78
28 2 0.04
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (26 bp):
TTTGGCACCATGGTGCCGCCAATTTA
Found at i:9124126 original size:27 final size:30
Alignment explanation
Indices: 9124096--9124167 Score: 107
Period size: 29 Copynumber: 2.5 Consensus size: 30
9124086 GTTTTTTTTG
*
9124096 ATATATTTTGGTAAAT-AA-AAAAAGTT-T
1 ATATATTTTGATAAATAAATAAAAAGTTGT
9124123 ATATATTTTGATAAATAAATAAAAAGTTGT
1 ATATATTTTGATAAATAAATAAAAAGTTGT
9124153 A-ATATTTTGATAAAT
1 ATATATTTTGATAAAT
9124168 TTTTATTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 15 0.37
28 2 0.05
29 22 0.54
30 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.42
Consensus pattern (30 bp):
ATATATTTTGATAAATAAATAAAAAGTTGT
Found at i:9125572 original size:15 final size:16
Alignment explanation
Indices: 9125554--9125583 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9125544 TTATAATTTT
9125554 TATATTTTTA-GATTA
1 TATATTTTTATGATTA
9125569 TATATTTTTATGATT
1 TATATTTTTATGATT
9125584 TTTTAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (16 bp):
TATATTTTTATGATTA
Found at i:9125572 original size:24 final size:24
Alignment explanation
Indices: 9125545--9125613 Score: 81
Period size: 23 Copynumber: 2.9 Consensus size: 24
9125535 TTCCATTATT
*
9125545 TATAATTTTTAT-ATTTTTAGAT-
1 TATAATTTTTATAATTTTTAAATA
*
9125567 TATATATTTTTATGATTTTTTAAATA
1 TATA-ATTTTTAT-AATTTTTAAATA
9125593 T-TAATTTTTATAATTTTTAAA
1 TATAATTTTTATAATTTTTAAA
9125614 AGTTCACATA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
22 4 0.10
23 17 0.43
24 8 0.20
25 10 0.25
26 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (24 bp):
TATAATTTTTATAATTTTTAAATA
Found at i:9126275 original size:31 final size:29
Alignment explanation
Indices: 9126231--9126292 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
9126221 TCTTAATATT
*
9126231 TGTTATCTGTATTTTCATAAAATATTTAATA
1 TGTTATCTATATTTT-A-AAAATATTTAATA
* *
9126262 TGTTATTTATATTTTAAAAGTATTTAATA
1 TGTTATCTATATTTTAAAAATATTTAATA
9126291 TG
1 TG
9126293 GTGCATGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 14 0.50
30 1 0.04
31 13 0.46
ACGTcount: A:0.35, C:0.03, G:0.08, T:0.53
Consensus pattern (29 bp):
TGTTATCTATATTTTAAAAATATTTAATA
Found at i:9128748 original size:46 final size:46
Alignment explanation
Indices: 9128692--9128844 Score: 150
Period size: 46 Copynumber: 3.3 Consensus size: 46
9128682 TTACCTGTTT
* * *
9128692 GGGTTAAACCTACACGAATCGAATAATAGTGCTC-AGTCACCGGTTA
1 GGGTTGAACCTACACGAAT-GAATAATAGTGCTCTGGTCACCCGTTA
* * ****
9128738 GGGTTGAACCTACACGAATTGGATAATAGTGC-CTGGTTAGTTATTA
1 GGGTTGAACCTACACGAA-TGAATAATAGTGCTCTGGTCACCCGTTA
* * *
9128784 GGATTGAACCTACACGAATTAGATAATAATG-TCTGGTCACCCGTTA
1 GGGTTGAACCTACACGAATGA-ATAATAGTGCTCTGGTCACCCGTTA
9128830 GGGTTGAACCTACAC
1 GGGTTGAACCTACAC
9128845 AACATATAGT
Statistics
Matches: 85, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
45 2 0.02
46 82 0.96
47 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (46 bp):
GGGTTGAACCTACACGAATGAATAATAGTGCTCTGGTCACCCGTTA
Found at i:9131457 original size:27 final size:29
Alignment explanation
Indices: 9131415--9131493 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 29
9131405 GTTATAAAAT
*
9131415 ATAAAA-AAATATATATATATATATGT-A
1 ATAAAAGAAATAAATATATATATATGTGA
* *
9131442 CATATAAG-AA-AAATATATATGTATGTGA
1 -ATAAAAGAAATAAATATATATATATGTGA
*
9131470 ATAAAAGAAATAAAAATATATATA
1 ATAAAAGAAATAAATATATATATA
9131494 AAAATATACA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
27 20 0.49
28 10 0.24
29 11 0.27
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (29 bp):
ATAAAAGAAATAAATATATATATATGTGA
Found at i:9131636 original size:22 final size:23
Alignment explanation
Indices: 9131608--9131650 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
9131598 ATTAAGAAAT
*
9131608 ATGTACGTATATATAT-TATAAA
1 ATGTACGCATATATATATATAAA
*
9131630 ATGTACGCATGTATATATATA
1 ATGTACGCATATATATATATA
9131651 TAACAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.40
Consensus pattern (23 bp):
ATGTACGCATATATATATATAAA
Found at i:9138592 original size:16 final size:16
Alignment explanation
Indices: 9138571--9138617 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
9138561 TTATTAAATT
9138571 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
9138587 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
9138602 AT-TATGTTAAATTATA
1 ATATAT-TTTAATTATA
9138618 TTTTATAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.42
16 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:9138704 original size:120 final size:120
Alignment explanation
Indices: 9138507--9138854 Score: 662
Period size: 120 Copynumber: 2.9 Consensus size: 120
9138497 TATGTTAAAT
9138507 TATC-TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
9138571 ATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTTATAG
66 ATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTTATAG
*
9138626 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
*
9138691 ATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAG
66 ATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTTATAG
9138746 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
9138811 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 ATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
9138855 ATGATTAAAT
Statistics
Matches: 223, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
119 4 0.02
120 214 0.96
121 5 0.02
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
ATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTTATAG
Found at i:9138717 original size:15 final size:15
Alignment explanation
Indices: 9138682--9138733 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
9138672 TTAAGAATTT
*
9138682 TATTAAATTAT-ATA
1 TATTTAATTATAATA
9138696 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
9138710 TATTTAATAATAAT-
1 TATTTAATTATAATA
9138724 TATGTTAATT
1 TAT-TTAATT
9138734 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:9138832 original size:16 final size:16
Alignment explanation
Indices: 9138811--9138852 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
9138801 TTATTAAATT
*
9138811 ATATATTTTAATTATA
1 ATATATTTTAATAATA
9138827 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
9138842 AT-TATGTTTAA
1 ATATAT-TTTAA
9138853 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:9138837 original size:15 final size:15
Alignment explanation
Indices: 9138802--9138843 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
9138792 TTAAGAATTT
*
9138802 TATTAAATTAT-ATA
1 TATTTAATTATAATA
9138816 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
9138830 TATTTAATAATAAT
1 TATTTAATTATAAT
9138844 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:9139043 original size:44 final size:45
Alignment explanation
Indices: 9138993--9139087 Score: 131
Period size: 45 Copynumber: 2.1 Consensus size: 45
9138983 TTACACCTCT
*
9138993 ATTACATTCAACCAAACACAAT-A-ATACTATTACACCTCTATTCC
1 ATTACATTCAACCAAACA-AATGATATACTATTACACCTCTAATCC
* * *
9139037 ATTACATTCAACCAAACAATTGATTTGCTATTACACCTCTAATCC
1 ATTACATTCAACCAAACAAATGATATACTATTACACCTCTAATCC
9139082 ATTACA
1 ATTACA
9139088 CCTCTATTCC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
43 2 0.04
44 19 0.42
45 24 0.53
ACGTcount: A:0.39, C:0.27, G:0.02, T:0.32
Consensus pattern (45 bp):
ATTACATTCAACCAAACAAATGATATACTATTACACCTCTAATCC
Found at i:9139087 original size:16 final size:16
Alignment explanation
Indices: 9139066--9139135 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
9139056 TTGATTTGCT
*
9139066 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
9139082 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
9139098 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
**
9139114 ATTACGTCTCTATTCC
1 ATTACACCTCTATTCC
*
9139130 AATACA
1 ATTACA
9139136 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.27, C:0.34, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:9140204 original size:3 final size:3
Alignment explanation
Indices: 9140196--9140227 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
9140186 GCAAAAAATC
9140196 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
9140228 CTCAAATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9141124 original size:42 final size:41
Alignment explanation
Indices: 9141077--9141158 Score: 105
Period size: 40 Copynumber: 2.0 Consensus size: 41
9141067 TCTTCTAGGG
* *
9141077 TTTTCATAGTTTTAGGTTAGGTTTTC-C-TTTCTTTTTCTTTTC
1 TTTTCAT--TTTTAGATTAAGTTTTCTCTTTTC-TTTTCTTTTC
9141119 TTTTCATTTTTAGATTAAGTTTTCTCTTTTCTTTTCTTTT
1 TTTTCATTTTTAGATTAAGTTTTCTCTTTTCTTTTCTTTT
9141159 TAGATTAGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
40 15 0.42
41 10 0.28
42 11 0.31
ACGTcount: A:0.11, C:0.13, G:0.09, T:0.67
Consensus pattern (41 bp):
TTTTCATTTTTAGATTAAGTTTTCTCTTTTCTTTTCTTTTC
Found at i:9141161 original size:30 final size:30
Alignment explanation
Indices: 9141108--9141165 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
9141098 TTTTCCTTTC
9141108 TTTTTCTTTTCTTTTCATTTTTAGATTAAG
1 TTTTTCTTTTCTTTTCATTTTTAGATTAAG
9141138 TTTTCTCTTTTCTTTTC-TTTTTAGATTA
1 TTTT-TCTTTTCTTTTCATTTTTAGATTA
9141166 GATTTTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 15 0.56
31 12 0.44
ACGTcount: A:0.14, C:0.12, G:0.05, T:0.69
Consensus pattern (30 bp):
TTTTTCTTTTCTTTTCATTTTTAGATTAAG
Found at i:9142088 original size:75 final size:75
Alignment explanation
Indices: 9141948--9142088 Score: 167
Period size: 75 Copynumber: 1.9 Consensus size: 75
9141938 CCAAATATGA
* * * * ** * **
9141948 TAACCAAAACGCAGAGTTTTGATCTTGATGTATATTAGAATTAGTTGCGCTTATTAGAAGTGCCG
1 TAACCAAAACGCAGAGTTTTGATCTCGATGTATAATACAATTAGTGGCGCTTAGGAAAAACGCCG
9142013 CAAAAAATCT
66 CAAAAAATCT
* *
9142023 TAACCAAAACGCAGCGTTTTGGTCTCGATGTATAATACAATTAGTGGCG-TTAGGGAAAAACGCC
1 TAACCAAAACGCAGAGTTTTGATCTCGATGTATAATACAATTAGTGGCGCTTA-GGAAAAACGCC
9142087 GC
65 GC
9142089 TAAAGCATAA
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
74 3 0.06
75 51 0.94
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (75 bp):
TAACCAAAACGCAGAGTTTTGATCTCGATGTATAATACAATTAGTGGCGCTTAGGAAAAACGCCG
CAAAAAATCT
Found at i:9142177 original size:188 final size:188
Alignment explanation
Indices: 9141816--9142180 Score: 432
Period size: 188 Copynumber: 1.9 Consensus size: 188
9141806 CGCATTGTGG
* ** * *
9141816 GAAGTGCCGCAAAAAATCTTAACGAAAACACATTGTTTTGGTATCGATGTATATTAGAATTAGTG
1 GAAGTGCCGCAAAAAATCTTAACCAAAACACAGCGTTTTGGTATCGATGTATAATACAATTAGTG
* * *
9141881 GCGCTTACAAAAACACGCCACTAAAACAAGTCTTAGCGGCGCTTACGAAAAGCGCTGCCAAATAT
66 GCGCTTACAAAAACACGCCACTAAAACAAGACTTAGCGGCGCTTACGAAAAGCGCCGCAAAATAT
* * *
9141946 GATAACCAAAACGCAGAGTTTTGATCTTGATGTATATTAGAATTAGTTGCGCTTATTA
131 CATAACCAAAACGCAGAGTTTTGATCTTGAAGTATACTAGAATTAGTTGCGCTTATTA
* *
9142004 GAAGTGCCGCAAAAAATCTTAACCAAAACGCAGCGTTTTGGTCTCGATGTATAATACAATTAGTG
1 GAAGTGCCGCAAAAAATCTTAACCAAAACACAGCGTTTTGGTATCGATGTATAATACAATTAGTG
** * * * * *** * *
9142069 GCG-TTAGGGAAAA-ACGCCGCTAAAGCATA-ACATTAGCGGTGATTTTTTAGAAGCGCCGTAAA
66 GCGCTTA-CAAAAACACGCCACTAAAACA-AGAC-TTAGCGGCG-CTTACGAAAAGCGCCGCAAA
* *
9142131 ATATCTTAACCAAAACGCAGAG-TTTGGTCTTGAAGTATACTAGAATTAGT
127 ATATCATAACCAAAACGCAGAGTTTTGATCTTGAAGTATACTAGAATTAGT
9142181 GGCGAAAATG
Statistics
Matches: 147, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
187 16 0.11
188 99 0.67
189 32 0.22
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (188 bp):
GAAGTGCCGCAAAAAATCTTAACCAAAACACAGCGTTTTGGTATCGATGTATAATACAATTAGTG
GCGCTTACAAAAACACGCCACTAAAACAAGACTTAGCGGCGCTTACGAAAAGCGCCGCAAAATAT
CATAACCAAAACGCAGAGTTTTGATCTTGAAGTATACTAGAATTAGTTGCGCTTATTA
Found at i:9142485 original size:229 final size:226
Alignment explanation
Indices: 9142009--9142620 Score: 654
Period size: 229 Copynumber: 2.7 Consensus size: 226
9141999 TATTAGAAGT
* * * *
9142009 GCCGCAAAAAATCTTAACCAAAACGCAGCGTTTTGGTCTCGATGTATAATACAATTAGTGGCGTT
1 GCCGCAAAATATATTAACCAAAACGCAGCGTTTTGGTCTTGATGTATACTACAATTAGTGGCGTT
* * * * * *** *
9142074 A-GGGAAAAACGCCGCTAAAGCATAACATTAGCGGTGATTTTTTAGAAGCGCCGTAAAATATCTT
66 ACGAG-AAAATGCCGCTAAAGCATAATATTAGCGGCGCTTTGCGAGAAGCGCCGCAAAATATC-T
*
9142138 AACCAAAACGCAGAGTTTGGTCTTGAAGTATACTAGAATTAGTGGCGAAAATGGAAAACGCCACT
129 AACCAAAACGCAGAGTTTGGTCTTGAAGTATACTAGAATTAGTGGCGAAAATGGAAAACGACACT
* *
9142203 AAAGCGTACTATTAGCGGCGCGTTTGGAGAAGC
194 AAAGCATACTATTAGCGGCGCGTTTGGAAAAGC
* * * * *
9142236 GCCGCTAAATTTTGTTAACCAAAACTCAGCGTTTTGGTCTTGATGTATACTATAATTAGTGGCGC
1 GCCGC-AAAATATATTAACCAAAACGCAGCGTTTTGGTCTTGATGTATACTACAATTAGTGGCG-
* ** * * *
9142301 TTACTAGAAAATGCCGCTAAATAATAGTATTAGCGGCGCTTTGCGATAAGCGCCGCAAGATATGC
64 TTACGAGAAAATGCCGCTAAAGCATAATATTAGCGGCGCTTTGCGAGAAGCGCCGCAAAATAT-C
* * ***
9142366 -ACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGGAAAACGAC
128 TA-ACCAAAACGCAGAGTTTGGTCTTGAAGTATACTAGAATTAGTGGCGAAAAT-GGAAAACGAC
* * * **
9142430 GCTATAGCATTCTATTAGCGGCGCGTTTTTAAAAGC
191 ACTAAAGCATACTATTAGCGGCGCGTTTGGAAAAGC
* ** **
9142466 GCCGCAAAATATATTAACCAAAACGCTGCGTTTAAGTCTTGATGTATACTGGAATTAGTGGCGTT
1 GCCGCAAAATATATTAACCAAAACGCAGCGTTTTGGTCTTGATGTATACTACAATTAGTGGCGTT
* * * ** * *
9142531 CACGAG-AAATCACCGTTAAAGCATATTATTAGCGGCGCTTTTTGGGAAGCGCCGCCAAATATCT
66 -ACGAGAAAAT-GCCGCTAAAGCATAATATTAGCGGCGCTTTGCGAGAAGCGCCGCAAAATATC-
*
9142595 TAACCAAAACGCACAGTTTTGGTCTT
128 TAACCAAAACGCAGAG-TTTGGTCTT
9142621 AACCATGCAT
Statistics
Matches: 316, Mismatches: 58, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
227 5 0.02
228 58 0.18
229 198 0.63
230 55 0.17
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (226 bp):
GCCGCAAAATATATTAACCAAAACGCAGCGTTTTGGTCTTGATGTATACTACAATTAGTGGCGTT
ACGAGAAAATGCCGCTAAAGCATAATATTAGCGGCGCTTTGCGAGAAGCGCCGCAAAATATCTAA
CCAAAACGCAGAGTTTGGTCTTGAAGTATACTAGAATTAGTGGCGAAAATGGAAAACGACACTAA
AGCATACTATTAGCGGCGCGTTTGGAAAAGC
Found at i:9142561 original size:115 final size:112
Alignment explanation
Indices: 9141994--9142620 Score: 564
Period size: 114 Copynumber: 5.5 Consensus size: 112
9141984 AGAATTAGTT
* * * * *
9141994 GCGCTTATTAGAAGTGCCGCAAAAAATCTTAACCAAAACGCAGCGTTTTGGTCTCGATGTATAAT
1 GCGCTTTTTAGAAGCGCCGCAAAATATCTTAACCAAAACGCAGCG-TTTGGTCTTGATGTATACT
* * **
9142059 ACAATTAGTGGCGTTA-GGGAAAAACGCCGCTAAAGCATAACATTAGCG
65 AGAATTAGTGGCGTTACGAG-AAAACGCCGCTAAAGCATATTATTAGCG
* * * * *
9142107 GTGATTTTTTAGAAGCGCCGTAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGAAGTATACT
1 GCG-CTTTTTAGAAGCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATACT
** * * * *
9142172 AGAATTAGTGGCGAAAATG-GAAAACGCCACTAAAGCGTACTATTAGCG
65 AGAATTAGTGGCG-TTACGAGAAAACGCCGCTAAAGCATATTATTAGCG
** * * * *
9142220 GCGCGTTTGGAGAAGCGCCGCTAAATTTTGTTAACCAAAACTCAGCGTTTTGGTCTTGATGTATA
1 GCGC-TTTTTAGAAGCGCCGC-AAAATATCTTAACCAAAACGCAGCG-TTTGGTCTTGATGTATA
* * * ** *
9142285 CTATAATTAGTGGCGCTTACTAGAAAATGCCGCTAAATAATAGTATTAGCG
63 CTAGAATTAGTGGCG-TTACGAGAAAACGCCGCTAAAGCATATTATTAGCG
** * * * *
9142336 GCGCTTTGCGATAAGCGCCGCAAGATATGC--ACACCAAAACGCAGAGTTTGGTCTTGAGGTATA
1 GCGCTTT-TTAGAAGCGCCGCAAAATAT-CTTA-ACCAAAACGCAGCGTTTGGTCTTGATGTATA
* * * * *
9142399 TTAGAATTAGTGGCGCTTATGGGAAAACGACGCTATAGCAT-TCTATTAGCG
63 CTAGAATTAGTGGCG-TTACGAGAAAACGCCGCTAAAGCATAT-TATTAGCG
* * * *
9142450 GCGCGTTTTTAAAAGCGCCGCAAAATATATTAACCAAAACGCTGCGTTTAAGTCTTGATGTATAC
1 GCGC-TTTTTAGAAGCGCCGCAAAATATCTTAACCAAAACGCAGCGTTT-GGTCTTGATGTATAC
* * * *
9142515 TGGAATTAGTGGCGTTCACGAGAAATCACCGTTAAAGCATATTATTAGCG
64 TAGAATTAGTGGCGTT-ACGAGAAAACGCCGCTAAAGCATATTATTAGCG
* *
9142565 GCGCTTTTTGGGAAGCGCCGCCAAATATCTTAACCAAAACGCA-CAGTTTTGGTCTT
1 GCGCTTTTT-AGAAGCGCCGCAAAATATCTTAACCAAAACGCAGC-G-TTTGGTCTT
9142621 AACCATGCAT
Statistics
Matches: 410, Mismatches: 84, Indels: 38
0.77 0.16 0.07
Matches are distributed among these distances:
113 69 0.17
114 157 0.38
115 142 0.35
116 42 0.10
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (112 bp):
GCGCTTTTTAGAAGCGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGATGTATACTA
GAATTAGTGGCGTTACGAGAAAACGCCGCTAAAGCATATTATTAGCG
Found at i:9142959 original size:22 final size:21
Alignment explanation
Indices: 9142929--9142983 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 21
9142919 AGTGTATGGT
* *
9142929 GTTTTGGGTTTAAGGTTTAAG
1 GTTTGGGGTTTAAGATTTAAG
*
9142950 AGTTTGGGGTTTAAGATTTGAG
1 -GTTTGGGGTTTAAGATTTAAG
9142972 GTTTGGGGTTTA
1 GTTTGGGGTTTA
9142984 GGCTGCTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45
Consensus pattern (21 bp):
GTTTGGGGTTTAAGATTTAAG
Found at i:9142960 original size:15 final size:14
Alignment explanation
Indices: 9142941--9142975 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
9142931 TTTGGGTTTA
9142941 AGGTTTAAGAGTTTG
1 AGGTTTAAGA-TTTG
*
9142956 GGGTTTAAGATTTG
1 AGGTTTAAGATTTG
9142970 AGGTTT
1 AGGTTT
9142976 GGGGTTTAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (14 bp):
AGGTTTAAGATTTG
Found at i:9142974 original size:14 final size:15
Alignment explanation
Indices: 9142936--9142975 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
9142926 GGTGTTTTGG
*
9142936 GTTTAAGGTTTAAGA
1 GTTTGAGGTTTAAGA
*
9142951 GTTTGGGGTTTAAGA
1 GTTTGAGGTTTAAGA
9142966 -TTTGAGGTTT
1 GTTTGAGGTTT
9142976 GGGGTTTAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.45
Consensus pattern (15 bp):
GTTTGAGGTTTAAGA
Found at i:9144200 original size:36 final size:36
Alignment explanation
Indices: 9144160--9144257 Score: 124
Period size: 36 Copynumber: 2.6 Consensus size: 36
9144150 GTTTCTTTGC
9144160 TTTTCTTTTCTGCCGATTTGCTCCCAGTTTATTTTA
1 TTTTCTTTTCTGCCGATTTGCTCCCAGTTTATTTTA
* * *
9144196 TTTTCTTTTCTGCCGATTTGCTCCCCCCGTTTCTTTTC
1 TTTTCTTTTCTGCCGATTTGCT--CCCAGTTTATTTTA
* *
9144234 TTTTCTTTTTCGGCTGATTTGCTC
1 TTTTC-TTTTCTGCCGATTTGCTC
9144258 AGTTTCTGCC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
36 22 0.41
37 1 0.02
38 16 0.30
39 15 0.28
ACGTcount: A:0.06, C:0.27, G:0.12, T:0.55
Consensus pattern (36 bp):
TTTTCTTTTCTGCCGATTTGCTCCCAGTTTATTTTA
Found at i:9145698 original size:69 final size:69
Alignment explanation
Indices: 9145613--9145752 Score: 199
Period size: 69 Copynumber: 2.0 Consensus size: 69
9145603 TTTGTTGGTT
* *
9145613 TGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAAATGTTATTAATTTGTTAGTGAGTAGAAGATG
1 TGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAAATGTTATTAATTTGTTAGTCAATAGAAGATG
9145678 AAAC
66 AAAC
* * * * * * *
9145682 TGTTCTGGCAGTTGTTTTGATTGTCTGCTGGAAATTGTTCTTGATTTGTTAGTCAATAGAATATG
1 TGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAAATGTTATTAATTTGTTAGTCAATAGAAGATG
9145747 AAAC
66 AAAC
9145751 TG
1 TG
9145753 GAACTTGATT
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.41
Consensus pattern (69 bp):
TGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAAATGTTATTAATTTGTTAGTCAATAGAAGATG
AAAC
Found at i:9146983 original size:37 final size:37
Alignment explanation
Indices: 9146936--9147024 Score: 133
Period size: 37 Copynumber: 2.4 Consensus size: 37
9146926 ATCATAAATA
* *
9146936 AATAATCTAATCAATGTTCAAACTGTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTGTGAACATGCTTT
* *
9146973 ATTAAACTAATCAATGTTAAAACTTTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTGTGAACATGCTTT
*
9147010 AATGAACTAATCAAT
1 AATAAACTAATCAAT
9147025 ATATTTATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.35
Consensus pattern (37 bp):
AATAAACTAATCAATGTTAAAACTGTGAACATGCTTT
Found at i:9147104 original size:33 final size:33
Alignment explanation
Indices: 9147067--9147142 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
9147057 TTAAAACTTG
*
9147067 AATTATACATATACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
9147100 AATTATACATACACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
9147133 AATTATACAT
1 AATTATACAT
9147143 GCTTTATAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (33 bp):
AATTATACATACACCAACAATTAATTTTAGGTC
Found at i:9150331 original size:47 final size:45
Alignment explanation
Indices: 9150280--9150447 Score: 132
Period size: 47 Copynumber: 3.6 Consensus size: 45
9150270 TATTTAATAT
*
9150280 TAATTATTTTAAATTGTATAAATTCATATAAGAAAAATTATTATCAA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTAT-AA
* * **
9150327 TAATT-TTATGAAA-TTATATATT-AT-T-ATTAAATTATATGTAATAA
1 TAATTATT-TTAAATTTATAAATTCATATAAGAAAATT-TAT-T-ATAA
* * *
9150371 TAATTATTTTAAATTATACAAATTCATATAAGATAATTTATTAGTTA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTA-TAA
9150418 TAATTATTTTAAATTTTATTAAA-TCATATA
1 TAATTATTTTAAA-TTTA-TAAATTCATATA
9150448 TTTTAATTAA
Statistics
Matches: 95, Mismatches: 13, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 14 0.15
45 12 0.13
46 10 0.11
47 36 0.38
48 9 0.09
49 5 0.05
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.48
Consensus pattern (45 bp):
TAATTATTTTAAATTTATAAATTCATATAAGAAAATTTATTATAA
Found at i:9150353 original size:91 final size:91
Alignment explanation
Indices: 9150206--9150413 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 91
9150196 TTGATTTTAG
* *
9150206 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
9150271 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
* * *
9150298 TAAATTCATATAAGAAAAATTATTATCAATAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
9150363 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
9150389 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
9150414 GTTATAATTA
Statistics
Matches: 105, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 89 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:9150374 original size:44 final size:43
Alignment explanation
Indices: 9150227--9150388 Score: 116
Period size: 44 Copynumber: 3.6 Consensus size: 43
9150217 AAGAACATTT
* * *
9150227 TATTATTAAGAATT-TTATGAAATTATATATCATTATTAAATTA
1 TATTAATAATAATTATT-TGAAATTATATATAATTATTAAATTA
* * * *
9150270 TATTTAATATTAATTATTTTAAATTGTATA-AATTCATATAAGA-AA
1 TA-TTAATAATAATTATTTGAAATTATATATAATT-AT-TAA-ATTA
* *
9150315 AATTATTATCAATAATT-TTATGAAATTATATATTATTATTAAATTA
1 TATTA--AT-AATAATTATT-TGAAATTATATATAATTATTAAATTA
*
9150361 TATGTAATAATAATTATTTTAAATTATA
1 TAT-TAATAATAATTATTTGAAATTATA
9150389 CAAATTCATA
Statistics
Matches: 91, Mismatches: 15, Indels: 25
0.69 0.11 0.19
Matches are distributed among these distances:
43 5 0.05
44 40 0.44
45 12 0.13
46 11 0.12
47 20 0.22
48 3 0.03
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (43 bp):
TATTAATAATAATTATTTGAAATTATATATAATTATTAAATTA
Found at i:9150388 original size:26 final size:28
Alignment explanation
Indices: 9150226--9150302 Score: 52
Period size: 28 Copynumber: 2.8 Consensus size: 28
9150216 TAAGAACATT
* *
9150226 TTATTATTAAGAATTTTATGAAATTATATA
1 TTATTATT-A-AATTATATGAAATAATATA
* ** *
9150256 TCATTATTAAATTATATTTAATATTA-A
1 TTATTATTAAATTATATGAAATAATATA
*
9150283 TTATT-TTAAATTGTAT-AAAT
1 TTATTATTAAATTATATGAAAT
9150303 TCATATAAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
25 3 0.08
26 10 0.26
27 5 0.13
28 12 0.32
29 1 0.03
30 7 0.18
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (28 bp):
TTATTATTAAATTATATGAAATAATATA
Found at i:9150553 original size:120 final size:120
Alignment explanation
Indices: 9150429--9150726 Score: 490
Period size: 120 Copynumber: 2.5 Consensus size: 120
9150419 AATTATTTTA
* * * **
9150429 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATCAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATCATGTT-AAATTAAATTT
9150493 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
9150549 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTAAATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATCATGTTAAATTAAATTTT
*
9150614 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
9150669 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATCATG-TTAAAT
9150727 ATAATTAAAT
Statistics
Matches: 167, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
120 160 0.96
121 7 0.04
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATCATGTTAAATTAAATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:9150566 original size:59 final size:59
Alignment explanation
Indices: 9150503--9150686 Score: 182
Period size: 59 Copynumber: 3.1 Consensus size: 59
9150493 TATAGTATCA
9150503 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* * * * * * *
9150562 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTATGTTAATTTA-AATTTTA-TAGTAT
1 TATATTATGATTTGAGTA-AAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
*
9150621 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
9150682 TATAT
1 TATAT
9150687 ATTTTAATTA
Statistics
Matches: 96, Mismatches: 15, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
56 6 0.06
57 11 0.11
58 10 0.10
59 20 0.21
60 8 0.08
61 15 0.16
62 9 0.09
63 11 0.11
64 6 0.06
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (59 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:9150567 original size:61 final size:61
Alignment explanation
Indices: 9150502--9150689 Score: 201
Period size: 61 Copynumber: 3.1 Consensus size: 61
9150492 TTATAGTATC
9150502 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * *
9150563 ATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATTATGTTAATTTA-AATTTTA-TAGTAT
1 ATATATTATGATTTGAGTAAAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
*
9150621 C
61 T
*
9150622 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
9150683 ATATATT
1 ATATATT
9150690 TTAATTATAA
Statistics
Matches: 98, Mismatches: 17, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
57 11 0.11
58 8 0.08
59 19 0.19
60 16 0.16
61 26 0.27
62 7 0.07
63 11 0.11
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:9150589 original size:15 final size:15
Alignment explanation
Indices: 9150554--9150605 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
9150544 TTAAGAATTT
*
9150554 TATTAAATTAT-ATA
1 TATTTAATTATAATA
9150568 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
9150582 TATTTAATAATAAT-
1 TATTTAATTATAATA
9150596 TATGTTAATT
1 TAT-TTAATT
9150606 TAAATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:9150704 original size:16 final size:16
Alignment explanation
Indices: 9150683--9150731 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
9150673 TTATTAAATT
9150683 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
9150699 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
9150714 AT-TATGTTTAAATATA
1 ATATAT-TTTAATTATA
9150730 AT
1 AT
9150732 TAAATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 11 0.39
16 15 0.54
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:9150918 original size:44 final size:44
Alignment explanation
Indices: 9150869--9150958 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 44
9150859 ACCTCTATTC
*
9150869 CATTCAACCAAACACA-AGA-TTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACA-ATA-ATTTACTATTACACCTCTATTCCATTA
*
9150913 CATTCAACCAAACAATTAATTTCCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACAA-TAATTTACTATTACACCTCTATTCCATTA
9150958 C
1 C
9150959 GCCTCTAATC
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
43 1 0.02
44 15 0.37
45 25 0.61
ACGTcount: A:0.36, C:0.30, G:0.02, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACAATAATTTACTATTACACCTCTATTCCATTA
Found at i:9150963 original size:16 final size:16
Alignment explanation
Indices: 9150933--9150975 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
9150923 AACAATTAAT
9150933 TTCCTATTACACCTCTA
1 TTCC-ATTACACCTCTA
*
9150950 TTCCATTACGCCTCTA
1 TTCCATTACACCTCTA
* *
9150966 ATCCAATACA
1 TTCCATTACA
9150976 GCGAACCAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 18 0.82
17 4 0.18
ACGTcount: A:0.28, C:0.35, G:0.02, T:0.35
Consensus pattern (16 bp):
TTCCATTACACCTCTA
Found at i:9152406 original size:18 final size:18
Alignment explanation
Indices: 9152383--9152417 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9152373 GAAAGATGAA
*
9152383 AAATGAAAAATTAAAAGG
1 AAATGAAAAAGTAAAAGG
*
9152401 AAATGAGAAAGTAAAAG
1 AAATGAAAAAGTAAAAG
9152418 TAAACAAGCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.20, T:0.14
Consensus pattern (18 bp):
AAATGAAAAAGTAAAAGG
Found at i:9184367 original size:20 final size:23
Alignment explanation
Indices: 9184333--9184373 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
9184323 TAATAGTTAT
9184333 TAATATATATATTTTA-AAATTC
1 TAATATATATATTTTACAAATTC
9184355 TAATATA-AT-TTTTACAAAT
1 TAATATATATATTTTACAAAT
9184374 ATATTTATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 6 0.33
22 7 0.39
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (23 bp):
TAATATATATATTTTACAAATTC
Found at i:9188997 original size:22 final size:22
Alignment explanation
Indices: 9188972--9189026 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
9188962 TAATATTTAT
9188972 AAGTGTTCCAATGAAACACTCC
1 AAGTGTTCCAATGAAACACTCC
*
9188994 AAGTGTTCTAATGAAACACTCC
1 AAGTGTTCCAATGAAACACTCC
* *
9189016 AAATATTCCAA
1 AAGTGTTCCAA
9189027 GAATCAAACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.24, G:0.11, T:0.25
Consensus pattern (22 bp):
AAGTGTTCCAATGAAACACTCC
Found at i:9200596 original size:23 final size:22
Alignment explanation
Indices: 9200545--9200596 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
9200535 CCTCGTCTTT
*
9200545 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
9200567 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
9200590 TTCTTTT
1 TTCTTTT
9200597 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:9200611 original size:18 final size:18
Alignment explanation
Indices: 9200590--9200628 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
9200580 TTTCTTCAAC
* *
9200590 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
9200608 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
9200626 TTC
1 TTC
9200629 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Found at i:9205734 original size:25 final size:25
Alignment explanation
Indices: 9205702--9205753 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
9205692 TAAGCATAAC
9205702 AACCTTGTACCAGCTCAAAAGGAAT
1 AACCTTGTACCAGCTCAAAAGGAAT
9205727 AACCTTGTACCAGCTCAAAAGGAAT
1 AACCTTGTACCAGCTCAAAAGGAAT
9205752 AA
1 AA
9205754 TAAAATGAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.19
Consensus pattern (25 bp):
AACCTTGTACCAGCTCAAAAGGAAT
Found at i:9205755 original size:28 final size:27
Alignment explanation
Indices: 9205697--9205756 Score: 88
Period size: 25 Copynumber: 2.3 Consensus size: 27
9205687 CCACCTAAGC
*
9205697 ATAACAACCTTGTACCAGCTCAAAAGG
1 ATAATAACCTTGTACCAGCTCAAAAGG
9205724 --AATAACCTTGTACCAGCTCAAAAGG
1 ATAATAACCTTGTACCAGCTCAAAAGG
9205749 AATAATAA
1 -ATAATAA
9205757 AATGAGTCCC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 24 0.83
28 5 0.17
ACGTcount: A:0.45, C:0.22, G:0.13, T:0.20
Consensus pattern (27 bp):
ATAATAACCTTGTACCAGCTCAAAAGG
Found at i:9205880 original size:10 final size:10
Alignment explanation
Indices: 9205865--9205898 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
9205855 CCTTCATAGT
9205865 AACCTTAAGC
1 AACCTTAAGC
9205875 AACCTTAAGC
1 AACCTTAAGC
9205885 AACCTTAAGC
1 AACCTTAAGC
9205895 AACC
1 AACC
9205899 ACTCCCTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.41, C:0.32, G:0.09, T:0.18
Consensus pattern (10 bp):
AACCTTAAGC
Found at i:9210767 original size:24 final size:23
Alignment explanation
Indices: 9210740--9210788 Score: 80
Period size: 24 Copynumber: 2.1 Consensus size: 23
9210730 GTTAATAATT
9210740 AATTAATTTTTAAAAAAATTTAAA
1 AATTAATTTTTAAAAAAA-TTAAA
*
9210764 AATTATTTTTTAAAAAAATTAAA
1 AATTAATTTTTAAAAAAATTAAA
9210787 AA
1 AA
9210789 GTGTAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
AATTAATTTTTAAAAAAATTAAA
Found at i:9210778 original size:23 final size:24
Alignment explanation
Indices: 9210740--9210788 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
9210730 GTTAATAATT
*
9210740 AATTAATTTTTAAAAAAATTTAAA
1 AATTAATTTTTAAAAAAAATTAAA
*
9210764 AATT-ATTTTTTAAAAAAATTAAA
1 AATTAATTTTTAAAAAAAATTAAA
9210787 AA
1 AA
9210789 GTGTAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
AATTAATTTTTAAAAAAAATTAAA
Found at i:9212152 original size:21 final size:21
Alignment explanation
Indices: 9212128--9212179 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
9212118 GCGGTTGCCT
* **
9212128 TGAGATTAGTTACTGTAGTAG
1 TGAGATTAGATACTGTAACAG
*
9212149 TGAGATTGGATACTGTAACAG
1 TGAGATTAGATACTGTAACAG
9212170 TGAGATTAGA
1 TGAGATTAGA
9212180 AACAGCGGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.33
Consensus pattern (21 bp):
TGAGATTAGATACTGTAACAG
Found at i:9213414 original size:10 final size:10
Alignment explanation
Indices: 9213399--9213424 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
9213389 GTTTTTTAAA
9213399 AAATATTTAC
1 AAATATTTAC
9213409 AAATATTTAC
1 AAATATTTAC
9213419 AAATAT
1 AAATAT
9213425 CAAATAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (10 bp):
AAATATTTAC
Found at i:9219240 original size:26 final size:28
Alignment explanation
Indices: 9219189--9219240 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 28
9219179 TTTTATTGTG
*
9219189 AATAGTTTTAGATAAAAATTAAAAATTT
1 AATAGTTTTAGATAAAAATAAAAAATTT
9219217 AATA-TTTTA-AT-AAAATAAAGAAAT
1 AATAGTTTTAGATAAAAATAAA-AAAT
9219241 AAATTATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 7 0.32
26 6 0.27
27 5 0.23
28 4 0.18
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.37
Consensus pattern (28 bp):
AATAGTTTTAGATAAAAATAAAAAATTT
Found at i:9219400 original size:74 final size:74
Alignment explanation
Indices: 9219313--9219463 Score: 302
Period size: 74 Copynumber: 2.0 Consensus size: 74
9219303 TACTTATCAT
9219313 ATTCAACACTTTTTTTGTTTAAAATTTTATATTACTTAAAAAATTAATATTGTTATCAAACACAA
1 ATTCAACACTTTTTTTGTTTAAAATTTTATATTACTTAAAAAATTAATATTGTTATCAAACACAA
9219378 TTAAAAAAA
66 TTAAAAAAA
9219387 ATTCAACACTTTTTTTGTTTAAAATTTTATATTACTTAAAAAATTAATATTGTTATCAAACACAA
1 ATTCAACACTTTTTTTGTTTAAAATTTTATATTACTTAAAAAATTAATATTGTTATCAAACACAA
9219452 TTAAAAAAA
66 TTAAAAAAA
9219461 ATT
1 ATT
9219464 TAAAGGTTGA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 77 1.00
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.42
Consensus pattern (74 bp):
ATTCAACACTTTTTTTGTTTAAAATTTTATATTACTTAAAAAATTAATATTGTTATCAAACACAA
TTAAAAAAA
Found at i:9233455 original size:15 final size:15
Alignment explanation
Indices: 9233435--9233488 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
9233425 ATACTAAAAA
9233435 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
9233450 ATATTTATAATTTTAAT
1 ATATTTAT--TATTAAT
*
9233467 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
9233484 ATATT
1 ATATT
9233489 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 13 0.41
17 11 0.34
19 8 0.25
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:9233486 original size:19 final size:17
Alignment explanation
Indices: 9233433--9233482 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
9233423 TTATACTAAA
9233433 AAATATTTATTATTAAT
1 AAATATTTATTATTAAT
*
9233450 --ATATTTATAATTTTAAT
1 AAATATTTAT--TATTAAT
9233467 AAATATTTATTATTAA
1 AAATATTTATTATTAA
9233483 AATATTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
15 8 0.30
17 11 0.41
19 8 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
AAATATTTATTATTAAT
Found at i:9235143 original size:15 final size:16
Alignment explanation
Indices: 9235117--9235149 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
9235107 ATTGATCAAA
9235117 CAACACCTTATTCTTT
1 CAACACCTTATTCTTT
*
9235133 CAACA-CTTATTTTTT
1 CAACACCTTATTCTTT
9235148 CA
1 CA
9235150 GTTTATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.45
Consensus pattern (16 bp):
CAACACCTTATTCTTT
Found at i:9235520 original size:18 final size:17
Alignment explanation
Indices: 9235483--9235515 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
9235473 GTGTATAAAA
9235483 CAATTAATATTAATTTT
1 CAATTAATATTAATTTT
9235500 CAATTAA-ATTAATTTT
1 CAATTAATATTAATTTT
9235516 TTCAACAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (17 bp):
CAATTAATATTAATTTT
Found at i:9241789 original size:29 final size:31
Alignment explanation
Indices: 9241756--9241819 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
9241746 GTATATTTGG
*
9241756 AATTTAAT-CTCCATA-TTTT-AATTTTCAAA
1 AATTTAATCCTCC-TACTTTTCAATTTTAAAA
*
9241785 AATTTAATCCTTCTACTTTTCAATTTTAAAA
1 AATTTAATCCTCCTACTTTTCAATTTTAAAA
9241816 AATT
1 AATT
9241820 AGGTTCATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 10 0.33
30 7 0.23
31 13 0.43
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (31 bp):
AATTTAATCCTCCTACTTTTCAATTTTAAAA
Found at i:9245461 original size:44 final size:44
Alignment explanation
Indices: 9245430--9245779 Score: 330
Period size: 44 Copynumber: 7.8 Consensus size: 44
9245420 TTGTCGTTTT
* *
9245430 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTC
* * *
9245474 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTGGTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTC
* * *
9245518 AACCTGCTCCACTACAACTTCAAGGAGATAAGATTTG-A--TAT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCT-TC
* * * * *
9245559 GATCTTCTCTACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGAT-A-A---G--ATTTGTAGCTTC
* * * * * *
9245610 AATCTGTTCCACTGCAACTTTAAGGAAATAAGATTCGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTC
* * *
9245655 AGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTC
* * * * * *
9245699 AATCTGCCCCACTGCAACTTCAGGGGGATAAAATTAGTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTC
*
9245743 AATCTGCTCCACTGCGACTTCAGGGAGATAAGATTTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
9245780 CCATAATGAC
Statistics
Matches: 242, Mismatches: 51, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
41 23 0.10
42 2 0.01
43 2 0.01
44 148 0.61
45 35 0.14
46 2 0.01
48 4 0.02
49 2 0.01
50 2 0.01
51 22 0.09
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTC
Found at i:9247763 original size:31 final size:31
Alignment explanation
Indices: 9247705--9247766 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
9247695 TAAAGAATGA
*
9247705 AATAAAAGAATATTTTGGCTAGAAATGAAAT
1 AATAAAAGAATATTTTAGCTAGAAATGAAAT
*
9247736 AATAAAAGAATATTTTAGTTATG-AATGAAAT
1 AATAAAAGAATATTTTAGCTA-GAAATGAAAT
9247767 GAAAAGGAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 27 0.96
32 1 0.04
ACGTcount: A:0.52, C:0.02, G:0.15, T:0.32
Consensus pattern (31 bp):
AATAAAAGAATATTTTAGCTAGAAATGAAAT
Found at i:9252108 original size:15 final size:15
Alignment explanation
Indices: 9252071--9252110 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
9252061 GGGTTATACT
9252071 AATATAAATAATAATG
1 AATAT-AATAATAATG
9252087 -ATAATAATAATAATG
1 AAT-ATAATAATAATG
9252102 AATATAATA
1 AATATAATA
9252111 TAGAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (15 bp):
AATATAATAATAATG
Found at i:9254221 original size:13 final size:13
Alignment explanation
Indices: 9254203--9254232 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9254193 CCTAATGGGA
9254203 TATTATAGGATAT
1 TATTATAGGATAT
*
9254216 TATTATGGGATAT
1 TATTATAGGATAT
9254229 TATT
1 TATT
9254233 TCTTAGCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (13 bp):
TATTATAGGATAT
Found at i:9254239 original size:56 final size:56
Alignment explanation
Indices: 9254152--9254257 Score: 178
Period size: 56 Copynumber: 1.9 Consensus size: 56
9254142 AGGGTGTTGT
9254152 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAATGGGATATTA
1 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAATGGGATATTA
**
9254208 TAGGATATTATTATGGGATATTAT-TTCTTAGCAATTTGATTTGTAATGGG
1 TAGGATATTATTATGGGATATTATCTT-TTAGCAATTTGATTCCTAATGGG
9254258 GTTAAAGTGT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
55 2 0.04
56 45 0.96
ACGTcount: A:0.29, C:0.06, G:0.20, T:0.45
Consensus pattern (56 bp):
TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAATGGGATATTA
Found at i:9256422 original size:23 final size:24
Alignment explanation
Indices: 9256378--9256422 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
9256368 CATTAAATGC
9256378 AATGTTTGAAAATATATATATTAA
1 AATGTTTGAAAATATATATATTAA
*
9256402 AATGTTTGAATAT-TATATATT
1 AATGTTTGAAAATATATATATT
9256423 CATACTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (24 bp):
AATGTTTGAAAATATATATATTAA
Found at i:9258098 original size:16 final size:16
Alignment explanation
Indices: 9258079--9258126 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
9258069 TCTAAATTAC
9258079 AACTGAAGTAAAAAC-A
1 AACTGAA-TAAAAACTA
*
9258095 AACTTAATAAAAACTA
1 AACTGAATAAAAACTA
9258111 AACTGAA-AAACAACTA
1 AACTGAATAAA-AACTA
9258127 TTCATAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.62, C:0.15, G:0.06, T:0.17
Consensus pattern (16 bp):
AACTGAATAAAAACTA
Found at i:9259244 original size:6 final size:6
Alignment explanation
Indices: 9259233--9259279 Score: 94
Period size: 6 Copynumber: 7.8 Consensus size: 6
9259223 TAGAAATTAA
9259233 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATA
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATA
9259280 ATCATTGAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (6 bp):
ATATAC
Found at i:9260977 original size:20 final size:20
Alignment explanation
Indices: 9260938--9260977 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
9260928 CTTATTCTTG
**
9260938 AGTAATTTTCATGTCTTTTT
1 AGTAATTTTCATGTAATTTT
*
9260958 AGTAGTTTTCATGTAATTTT
1 AGTAATTTTCATGTAATTTT
9260978 TATTCTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.07, G:0.12, T:0.57
Consensus pattern (20 bp):
AGTAATTTTCATGTAATTTT
Found at i:9261351 original size:22 final size:22
Alignment explanation
Indices: 9261296--9261353 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
9261286 CTGATAAGGA
*
9261296 TATCACGATACCCTCCCATGGG
1 TATCACGATACCCTCCCATGAG
** * *
9261318 TATTGCGGTACCCTCCCCTGAG
1 TATCACGATACCCTCCCATGAG
9261340 TATCACGATACCCT
1 TATCACGATACCCT
9261354 TGTTGTATAA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.21, C:0.36, G:0.17, T:0.26
Consensus pattern (22 bp):
TATCACGATACCCTCCCATGAG
Found at i:9261585 original size:17 final size:18
Alignment explanation
Indices: 9261563--9261596 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
9261553 AGGGTTAGGG
9261563 TTTTTCTTTTC-TTTTTC
1 TTTTTCTTTTCATTTTTC
9261580 TTTTTCTTTTCATTTTT
1 TTTTTCTTTTCATTTTT
9261597 AGTTTAGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTCTTTTCATTTTTC
Done.