Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 37 of 230
Found at i:9920098 original size:87 final size:87
Alignment explanation
Indices: 9919983--9920148 Score: 226
Period size: 89 Copynumber: 1.9 Consensus size: 87
9919973 ACTAGCTTCA
* * *
9919983 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTC
1 ATCTACTCCGCTGTAATCTCAGGGAGATAAAATCTAAT-GCTTCAATCTACTCCACTGTAACCTC
9920047 AGGGAGATAAGATAGTGTCTTGG
65 AGGGAGATAAGATAGTGTCTTGG
* * ** *
9920070 ATCTGCTCCGCTGTAATCTCAGGGAGATAAAATCTGAAATTCTTCGGTCTACTCTACTGTAACCT
1 ATCTACTCCGCTGTAATCTCAGGGAGATAAAATCT--AATGCTTCAATCTACTCCACTGTAACCT
9920135 CAGGGAGATAAGAT
64 CAGGGAGATAAGAT
9920149 CTGAAATTCT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
87 33 0.49
89 34 0.50
90 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (87 bp):
ATCTACTCCGCTGTAATCTCAGGGAGATAAAATCTAATGCTTCAATCTACTCCACTGTAACCTCA
GGGAGATAAGATAGTGTCTTGG
Found at i:9920139 original size:46 final size:45
Alignment explanation
Indices: 9919593--9920501 Score: 364
Period size: 44 Copynumber: 20.8 Consensus size: 45
9919583 ATTAATTTCT
* * *
9919593 TTCG-TCTGCTCCACTGTAACCTCAGAGAGATAAGACCTG-A---
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAATTC
* * * * **
9919633 TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGGTT-
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTC
* ** * * * * *
9919678 TT-AATCCGCTCCATTGTAACTTCAGGGAGATAGGAT-TTATTTC
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAATTC
* ** * *
9919721 TTTCG-TCTGCTCCACTACAACTTCAGGGAGATAAGA-CTGGA-T-
1 -TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAATTC
* * * * * * *
9919763 GT-GATCTGCTCTACTGCAACTTCAGAGAAATAAGATCT--ATGGT-
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT--TC
** * * * * *
9919806 TTTAATCCACTCCACTGCAACTTCAGGAAGATAGGAT-T-AATTTC
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAA-TTC
* *
9919850 TTTCG-TCTGCTCCACTGTAACCTCAGGGAGATAAGACCTG-A---
1 -TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAATTC
* * * * * * **
9919891 TACGATCTGCTCTACTGTAACTTCAGAGAGATGAGATCCTTTATT-
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGAT-CTGAATTC
* ** * ** * * *
9919936 TT-AATCCGCTCCACTGTAACTTCAAAGAGATAGGAT-T-ACTAGC
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT-TC
* * * * *
9919979 TTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCT--CTGGC
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT-TC
* * *
9920023 TTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA--T-AGTGTC
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT-TC
* * * * *
9920066 TTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAAATCTGAAATTC
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTC
* *
9920112 TTCGGTCTACTCTACTGTAACCTCAGGGAGATAAGATCTGAAATTC
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTC
* * *
9920158 TTCGGTCTACTCCACTGTAACCTCAGGGAGAAAAGACCTG-A---
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAATTC
* * ** * *
9920199 TGCGATATACTCTGCTGTAACTTCAGAGAGATAAGATCCTTG-ATT-
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGAT-C-TGAATTC
* * * * * *
9920244 TT-AATCCACTCCACTGTAATCTTAGGGAGATAGGAT-T-ACTATC
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT-TC
* * * * * * *
9920287 TTCAATCTGCTCCGCTGTAATCTCATGGAGATAAGATCT--CTGGC
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT-TC
* * *
9920331 TTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTT
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTC
* * * * *
9920377 TTCGGTCTACTCCACTGTAACTTCAGAGAGATAAGGTTTGAAATTC
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTC
* *
9920423 TTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTG-A---
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAATTC
* * * **
9920464 TGCGATCTACTCTACTGTAACTTCAGAAAGATAAGATC
1 TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATC
9920502 CTTGATTTTA
Statistics
Matches: 671, Mismatches: 151, Indels: 93
0.73 0.17 0.10
Matches are distributed among these distances:
40 8 0.01
41 148 0.22
42 10 0.01
43 48 0.07
44 292 0.44
45 11 0.02
46 151 0.23
47 3 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (45 bp):
TTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAATTC
Found at i:9920238 original size:308 final size:308
Alignment explanation
Indices: 9919854--9920463 Score: 913
Period size: 308 Copynumber: 2.0 Consensus size: 308
9919844 AATTTCTTTC
* * * *
9919854 GTCTGCTCCACTGTAACCTCAGGGAGATAAGACCTGATACGATCTGCTCTACTGTAACTTCAGAG
1 GTCTACTCCACTGTAACCTCAGGGAGAAAAGACCTGATACGATATACTCTACTGTAACTTCAGAG
* * *
9919919 AGATGAGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAAAGAGATAGGATTACTAGCTTCA
66 AGATAAGATCCTTGATTTTAATCCACTCCACTGTAATCTT-AAAGAGATAGGATTACTAGCTTCA
9919983 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
130 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
* * * *
9920048 GGGAGATAAGATAGTG-TCTT-GGATCTGCTCCGCTGTAA-TCTCAGGGAGATAAAATCTGAAAT
195 GGGAGATAAGAT-CTGATCTTCGG-TCTACTCCACTGTAACT-TCAGAGAGATAAAATCTGAAAT
* *
9920110 TCTTCGGTCTACTCTACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
257 TCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGAAATTCTTCG
* *
9920162 GTCTACTCCACTGTAACCTCAGGGAGAAAAGACCTGATGCGATATACTCTGCTGTAACTTCAGAG
1 GTCTACTCCACTGTAACCTCAGGGAGAAAAGACCTGATACGATATACTCTACTGTAACTTCAGAG
** *
9920227 AGATAAGATCCTTGATTTTAATCCACTCCACTGTAATCTTAGGGAGATAGGATTACTATCTTCAA
66 AGATAAGATCCTTGATTTTAATCCACTCCACTGTAATCTTAAAGAGATAGGATTACTAGCTTCAA
* *
9920292 TCTGCTCCGCTGTAATCTCATGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAG
131 TCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAG
* ** *
9920357 GGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACTTCAGAGAGATAAGGTTTGAAATT
196 GGAGATAAGATCTG--A-TCTTCGGTCTACTCCACTGTAACTTCAGAGAGATAAAATCTGAAATT
9920422 CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGA
258 CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGA
9920464 TGCGATCTAC
Statistics
Matches: 271, Mismatches: 24, Indels: 11
0.89 0.08 0.04
Matches are distributed among these distances:
307 2 0.01
308 188 0.69
309 3 0.01
311 75 0.28
312 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (308 bp):
GTCTACTCCACTGTAACCTCAGGGAGAAAAGACCTGATACGATATACTCTACTGTAACTTCAGAG
AGATAAGATCCTTGATTTTAATCCACTCCACTGTAATCTTAAAGAGATAGGATTACTAGCTTCAA
TCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAG
GGAGATAAGATCTGATCTTCGGTCTACTCCACTGTAACTTCAGAGAGATAAAATCTGAAATTCTT
CGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGAAATTCTTCG
Found at i:9920305 original size:44 final size:44
Alignment explanation
Indices: 9920252--9920593 Score: 169
Period size: 44 Copynumber: 7.8 Consensus size: 44
9920242 TTTTAATCCA
* * *
9920252 CTCCACTGTAATCTTAGGGAGATAGGAT-TACTATCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCT-CTAGCTTCAATCTG
* * *
9920296 CTCCGCTGTAATCTCATGGAGATAAGATCTCTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTCTAGCTTCAATCTG
* ** ** ** *
9920340 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCT-CTA-GCTTCAATCTG
* * * ** * ** *
9920386 CTCCACTGTAA-CTTCAGAGAGATAAGGTTTGAAATTCTTCGGTCTA
1 CTCCACTGTAATC-TCAGGGAGATAAGATCT-CTA-GCTTCAATCTG
* * * * *
9920432 CTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTCTAGCTTCAATCTG
* ** * * * *
9920473 CTCTACTGTAA-CTTCAGAAAGATAAGATC-CTTGATTTTAATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGATCTCTAG-CTTCAATCTG
* * * **
9920517 CTCCACTGTAATCTCAAGGAGATAGGAT-TATTATATTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCT-CTAGCTTCAATCTG
* *
9920561 CTCCGCTGTAATCTCAAGGAGATAAGATCTCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTCTA
9920594 ATATTCACTG
Statistics
Matches: 232, Mismatches: 53, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
40 1 0.00
41 29 0.12
42 3 0.01
43 1 0.00
44 123 0.53
45 5 0.02
46 69 0.30
47 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (44 bp):
CTCCACTGTAATCTCAGGGAGATAAGATCTCTAGCTTCAATCTG
Found at i:9920421 original size:265 final size:265
Alignment explanation
Indices: 9919982--9920592 Score: 911
Period size: 265 Copynumber: 2.3 Consensus size: 265
9919972 TACTAGCTTC
* * * ** * *
9919982 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCT
1 AATCCACTCCACTGTAATCTCAGGGAGATAGGAT-TACTATCTTCAATCTGCTCCGCTGTAATCT
* ** * ** * *
9920046 CAGGGAGATAAGAT-AGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAAATCTGAAAT
65 CAAGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAAATCTGAAAT
* *
9920110 TCTTCGGTCTACTCTACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTG
130 TCTTCGGTCTACTCCACTGTAACCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTG
* *
9920175 TAACCTCAGGGAGAAAAGACCTGATGCGATATACTCTGCTGTAACTTCAGAGAGATAAGATCCTT
195 TAACCTCAGGGAGAAAAGACCTGATGCGATATACTCTACTGTAACTTCAGAAAGATAAGATCCTT
9920240 GATTTT
260 GATTTT
*
9920246 AATCCACTCCACTGTAATCTTAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTC
1 AATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTC
* *
9920311 ATGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
66 AAGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAAATCTGAAATT
* * * *
9920376 TTTCGGTCTACTCCACTGTAACTTCAGAGAGATAAGGTTTGAAATTCTTCGGTCTACTCCACTGT
131 CTTCGGTCTACTCCACTGTAACCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGT
* *
9920441 AACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAAAGATAAGATCCTTG
196 AACCTCAGGGAGAAAAGACCTGATGCGATATACTCTACTGTAACTTCAGAAAGATAAGATCCTTG
9920506 ATTTT
261 ATTTT
* * * *
9920511 AATCCGCTCCACTGTAATCTCAAGGAGATAGGATTATTATATTCAATCTGCTCCGCTGTAATCTC
1 AATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTC
9920576 AAGGAGATAAGATCTCT
66 AAGGAGATAAGATCTCT
9920593 AATATTCACT
Statistics
Matches: 312, Mismatches: 33, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
263 1 0.00
264 67 0.21
265 244 0.78
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (265 bp):
AATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTC
AAGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAAATCTGAAATT
CTTCGGTCTACTCCACTGTAACCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGT
AACCTCAGGGAGAAAAGACCTGATGCGATATACTCTACTGTAACTTCAGAAAGATAAGATCCTTG
ATTTT
Found at i:9922842 original size:24 final size:21
Alignment explanation
Indices: 9922796--9922852 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
9922786 TTTATTTTTC
*
9922796 TTTATTGTTTTTTTATGTTCA
1 TTTATTGTTTTTTTATGTCCA
9922817 TTTATGTGTTTATTTATATGTCCA
1 TTTAT-TGTTT-TTT-TATGTCCA
*
9922841 TTTTTATGTTTT
1 TTTAT-TGTTTT
9922853 AGTTTATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 5 0.17
22 5 0.17
23 4 0.13
24 16 0.53
ACGTcount: A:0.16, C:0.05, G:0.11, T:0.68
Consensus pattern (21 bp):
TTTATTGTTTTTTTATGTCCA
Found at i:9923182 original size:110 final size:109
Alignment explanation
Indices: 9922989--9923285 Score: 387
Period size: 110 Copynumber: 2.7 Consensus size: 109
9922979 TTCAAAAAAC
* * * *
9922989 AAAAATTTTTCAAATAAGGCAATGTTTTGCTTTTAGAAATTCGAGAAAATATGCCCTAAGGTGCT
1 AAAAAATTTTAAAATAAGGCAATGTTTTGCTTTGA-AAATTCGAGAAAACATGCCCTAAGGTGCT
* *
9923054 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTTAATATCCTTTT
65 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATACCCTTTT
9923099 AAAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGAAAATTCGAGAAAACATGCCCTAAGGTGCT
1 AAAAAATTTTAAAATAAGGCAATGTTTTGC-TTTGAAAATTCGAGAAAACATGCCCTAAGGTGCT
9923164 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATACCCTTTT
65 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATACCCTTTT
* ** * ** * * ** * * *
9923209 TAAAAATTTCGAAGTAAGATAATATTTTGCATTTGGAAATTTAAGGAAACGTACCCTAAGGTGCT
1 AAAAAATTTTAAAATAAGGCAATGTTTTGC-TTTGAAAATTCGAGAAAACATGCCCTAAGGTGCT
*
9923274 GGGTTTCGATTT
65 GGGTGTCGATTT
9923286 CTCGTTTAAC
Statistics
Matches: 165, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
110 161 0.98
111 4 0.02
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (109 bp):
AAAAAATTTTAAAATAAGGCAATGTTTTGCTTTGAAAATTCGAGAAAACATGCCCTAAGGTGCTG
GGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATACCCTTTT
Found at i:9923989 original size:22 final size:21
Alignment explanation
Indices: 9923953--9924012 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
9923943 GGCCTGGCCC
*
9923953 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA-AAAAA
9923975 ATTTATTTTAAAAATTAAAAAA
1 ATTTATTTTAAAAA-TAAAAAA
**
9923997 AAGTATTTTAAAAATA
1 ATTTATTTTAAAAATA
9924013 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
21 2 0.06
22 23 0.70
23 8 0.24
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (21 bp):
ATTTATTTTAAAAATAAAAAA
Found at i:9924026 original size:17 final size:17
Alignment explanation
Indices: 9924004--9924048 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
9923994 AAAAAGTATT
9924004 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
*
9924021 TTAAAAA-AATTTAAAA
1 TTAAAAATATTTTAAAA
* *
9924037 ATAAATATATTT
1 TTAAAAATATTT
9924049 ATTATATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:9925023 original size:18 final size:18
Alignment explanation
Indices: 9924975--9925023 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
9924965 TTAGTTTTAA
*
9924975 AATTTTAAAAATATTTTT
1 AATTTTAAAAATAATTTT
*
9924993 ATATTTT-ATAATAATTTT
1 A-ATTTTAAAAATAATTTT
9925011 AATTTTAAAAATA
1 AATTTTAAAAATA
9925024 TATATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 5 0.19
18 16 0.62
19 5 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AATTTTAAAAATAATTTT
Found at i:9939189 original size:108 final size:108
Alignment explanation
Indices: 9939000--9939219 Score: 413
Period size: 108 Copynumber: 2.0 Consensus size: 108
9938990 TCGAAAATTG
9939000 AGGGCCTCGAGGGTGAGCTCGTTATGTGTAGAGCTATTGTGGGTAAAGGGATATTGGTTTCGATC
1 AGGGCCTCGAGGGTGAGCTCGTTATGTGTAGAGCTATTGTGGGTAAAGGGATATTGGTTTCGATC
9939065 CCTAAGCAACATAAAATGGATATCCCCAAGTTGAAAGACTTTA
66 CCTAAGCAACATAAAATGGATATCCCCAAGTTGAAAGACTTTA
* *
9939108 AGGGCCTCGAGGGTGAGCTCGTTATGTGTAGAGCTGTTGTGGGTAAAGGGATGTTGGTTTCGATC
1 AGGGCCTCGAGGGTGAGCTCGTTATGTGTAGAGCTATTGTGGGTAAAGGGATATTGGTTTCGATC
*
9939173 CCTAAGCAACGTAAAATGGATATCCCCAAGTTGAAAGACTTTA
66 CCTAAGCAACATAAAATGGATATCCCCAAGTTGAAAGACTTTA
9939216 AGGG
1 AGGG
9939220 GATGATGTCC
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 109 1.00
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (108 bp):
AGGGCCTCGAGGGTGAGCTCGTTATGTGTAGAGCTATTGTGGGTAAAGGGATATTGGTTTCGATC
CCTAAGCAACATAAAATGGATATCCCCAAGTTGAAAGACTTTA
Found at i:9940986 original size:7 final size:7
Alignment explanation
Indices: 9940974--9940998 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9940964 GATATATTTA
9940974 AAATCTG
1 AAATCTG
9940981 AAATCTG
1 AAATCTG
9940988 AAATCTG
1 AAATCTG
9940995 AAAT
1 AAAT
9940999 ACATTCGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (7 bp):
AAATCTG
Found at i:9951761 original size:18 final size:18
Alignment explanation
Indices: 9951738--9951772 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9951728 AACTAATGTA
9951738 TATGTGAATAGTATCGTC
1 TATGTGAATAGTATCGTC
*
9951756 TATGTGAATAGTGTCGT
1 TATGTGAATAGTATCGT
9951773 GGATGAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.40
Consensus pattern (18 bp):
TATGTGAATAGTATCGTC
Found at i:9960888 original size:22 final size:22
Alignment explanation
Indices: 9960846--9960889 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
9960836 AAAAAAGTAT
* *
9960846 AAATTAATTAAAAATTTTAAAA
1 AAATTAATTAAAAAGTATAAAA
*
9960868 AAATTATTTAAAAAGTATAAAA
1 AAATTAATTAAAAAGTATAAAA
9960890 TTATAATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (22 bp):
AAATTAATTAAAAAGTATAAAA
Found at i:9963037 original size:15 final size:14
Alignment explanation
Indices: 9963016--9963051 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
9963006 ATAATCCTTA
*
9963016 ATAATTATCTTAAT
1 ATAATTATCCTAAT
9963030 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
9963045 ATAATTA
1 ATAATTA
9963052 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:9963650 original size:22 final size:22
Alignment explanation
Indices: 9963599--9963656 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
9963589 TTATCATAAT
*
9963599 TTATTTATAAAAAAAACTTTTA
1 TTATTTATAAAAAAAACTTATA
** *
9963621 AAAGTTATAGAAAAAAA-TTATA
1 TTATTTATA-AAAAAAACTTATA
9963643 TTATTTATAAAAAA
1 TTATTTATAAAAAA
9963657 GTGTTATAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
21 5 0.18
22 16 0.57
23 7 0.25
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (22 bp):
TTATTTATAAAAAAAACTTATA
Found at i:9967683 original size:26 final size:25
Alignment explanation
Indices: 9967646--9967695 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
9967636 TAAGTTTTTT
9967646 TAGAAAATTATAAAAATTAAAATTA
1 TAGAAAATTATAAAAATTAAAATTA
9967671 TAGAAATATTATAAAAATTAAAATT
1 TAGAAA-ATTATAAAAATTAAAATT
9967696 CACTACTCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (25 bp):
TAGAAAATTATAAAAATTAAAATTA
Found at i:9967766 original size:10 final size:10
Alignment explanation
Indices: 9967753--9967787 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
9967743 TCTATATTAT
9967753 TTTTTATAAC
1 TTTTTATAAC
9967763 TTTTTATAAC
1 TTTTTATAAC
9967773 TTTTTATAA-
1 TTTTTATAAC
9967782 TTTTTA
1 TTTTTA
9967788 AAAATCAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 6 0.24
10 19 0.76
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (10 bp):
TTTTTATAAC
Found at i:9970779 original size:21 final size:21
Alignment explanation
Indices: 9970755--9970802 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
9970745 ATTTTCTTGT
*
9970755 TGCCTCAACTGCCCTTGCTGC
1 TGCCTCAACTGCCCTCGCTGC
* * *
9970776 TGCCTCTACTTCTCTCGCTGC
1 TGCCTCAACTGCCCTCGCTGC
9970797 TGCCTC
1 TGCCTC
9970803 TGCTTTAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.06, C:0.44, G:0.17, T:0.33
Consensus pattern (21 bp):
TGCCTCAACTGCCCTCGCTGC
Found at i:9984922 original size:22 final size:23
Alignment explanation
Indices: 9984897--9984945 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
9984887 TCATTTTGAT
*
9984897 AACTTTTTA-AACCTAAACCTTA
1 AACTTTTTAGAACCTAAACCCTA
*
9984919 AAC--TTTAGATCCTAAACCCTA
1 AACTTTTTAGAACCTAAACCCTA
9984940 AACTTT
1 AACTTT
9984946 AAACCTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
20 4 0.18
21 14 0.64
22 3 0.14
23 1 0.05
ACGTcount: A:0.39, C:0.24, G:0.02, T:0.35
Consensus pattern (23 bp):
AACTTTTTAGAACCTAAACCCTA
Found at i:9984948 original size:14 final size:14
Alignment explanation
Indices: 9984931--9984966 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
9984921 CTTTAGATCC
9984931 TAAACCCTAAACTT
1 TAAACCCTAAACTT
*
9984945 TAAACCTTAAACTT
1 TAAACCCTAAACTT
*
9984959 TGAACCCT
1 TAAACCCT
9984967 GAACCTTGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.39, C:0.28, G:0.03, T:0.31
Consensus pattern (14 bp):
TAAACCCTAAACTT
Found at i:9984955 original size:21 final size:20
Alignment explanation
Indices: 9984902--9984956 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 20
9984892 TTGATAACTT
*
9984902 TTTAAACCTAAACCTTAAAC
1 TTTAAACCTAAACCCTAAAC
*
9984922 TTTAGATCCTAAACCCTAAAC
1 TTTA-AACCTAAACCCTAAAC
9984943 TTTAAACCTTAAAC
1 TTTAAACC-TAAAC
9984957 TTTGAACCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.31
Consensus pattern (20 bp):
TTTAAACCTAAACCCTAAAC
Found at i:9985014 original size:14 final size:14
Alignment explanation
Indices: 9984990--9985020 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
9984980 AAGGTCCAAA
*
9984990 GTTTAAGGTCTAAG
1 GTTTAAAGTCTAAG
9985004 GTTTAAAGTCTAAG
1 GTTTAAAGTCTAAG
9985018 GTT
1 GTT
9985021 CAGGGTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.39
Consensus pattern (14 bp):
GTTTAAAGTCTAAG
Found at i:9986561 original size:14 final size:14
Alignment explanation
Indices: 9986542--9986568 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9986532 CATAAGTTGT
9986542 ATTTATAATTTGAC
1 ATTTATAATTTGAC
9986556 ATTTATAATTTGA
1 ATTTATAATTTGA
9986569 TGAGTGGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (14 bp):
ATTTATAATTTGAC
Found at i:9987124 original size:21 final size:23
Alignment explanation
Indices: 9987100--9987141 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
9987090 TATTCTTTTT
*
9987100 TTAAAT-TAAGTAAA-AAAATTC
1 TTAAATCTAAATAAACAAAATTC
9987121 TTAAATCTAAATAAACAAAAT
1 TTAAATCTAAATAAACAAAAT
9987142 AAATTAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 7 0.39
23 5 0.28
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (23 bp):
TTAAATCTAAATAAACAAAATTC
Found at i:9989999 original size:12 final size:12
Alignment explanation
Indices: 9989982--9990011 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
9989972 TCATTTAATC
9989982 ATCAAGTTTTTA
1 ATCAAGTTTTTA
*
9989994 ATCAAGTTTTTC
1 ATCAAGTTTTTA
9990006 ATCAAG
1 ATCAAG
9990012 CTCTCATCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (12 bp):
ATCAAGTTTTTA
Found at i:9996848 original size:5 final size:5
Alignment explanation
Indices: 9996838--9996894 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
9996828 AAAATTACAC
* * *
9996838 ATTTT ATTTT ATTTTT ATTTTT ATTTT -TATTC CTTCT ATTTT ATTTT
1 ATTTT ATTTT A-TTTT A-TTTT ATTTT AT-TTT ATTTT ATTTT ATTTT
9996885 ATTTT ATTTT
1 ATTTT ATTTT
9996895 GCAGGTAGAC
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
4 1 0.02
5 31 0.70
6 12 0.27
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:9996855 original size:6 final size:6
Alignment explanation
Indices: 9996839--9996894 Score: 57
Period size: 6 Copynumber: 9.5 Consensus size: 6
9996829 AAATTACACA
9996839 TTTTA- TTTTAT TTTTAT TTTTAT TTTTAT TCCTTCTA- TTTTA- TTTTA-
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T--TT-TAT TTTTAT TTTTAT
9996886 TTTTAT TTT
1 TTTTAT TTT
9996895 GCAGGTAGAC
Statistics
Matches: 46, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
5 17 0.37
6 24 0.52
8 3 0.07
9 2 0.04
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:9999511 original size:22 final size:22
Alignment explanation
Indices: 9999486--9999556 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
9999476 AAGAAGTATA
9999486 AATGAAATAGAGATCTACTTCT
1 AATGAAATAGAGATCTACTTCT
* * * ** *
9999508 AATGACTATTA-AAATTTAAAT-A
1 AATGA--AATAGAGATCTACTTCT
9999530 AATGAAATAGAGATCTACTTCT
1 AATGAAATAGAGATCTACTTCT
9999552 AATGA
1 AATGA
9999557 CTATTAAAAT
Statistics
Matches: 33, Mismatches: 12, Indels: 8
0.62 0.23 0.15
Matches are distributed among these distances:
20 3 0.09
21 6 0.18
22 15 0.45
23 6 0.18
24 3 0.09
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.32
Consensus pattern (22 bp):
AATGAAATAGAGATCTACTTCT
Found at i:9999533 original size:44 final size:44
Alignment explanation
Indices: 9999483--9999571 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
9999473 CATAAGAAGT
9999483 ATAAATGAAATAGAGATCTACTTCTAATGACTATTAAAATTTAA
1 ATAAATGAAATAGAGATCTACTTCTAATGACTATTAAAATTTAA
9999527 ATAAATGAAATAGAGATCTACTTCTAATGACTATTAAAATTTAA
1 ATAAATGAAATAGAGATCTACTTCTAATGACTATTAAAATTTAA
9999571 A
1 A
9999572 GTATATCGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.34
Consensus pattern (44 bp):
ATAAATGAAATAGAGATCTACTTCTAATGACTATTAAAATTTAA
Found at i:10000872 original size:41 final size:41
Alignment explanation
Indices: 10000815--10000990 Score: 203
Period size: 41 Copynumber: 4.3 Consensus size: 41
10000805 TTTTGTAAGT
*
10000815 TCAGGCTTTATGCCTAGCAGGCTTTATGCCAGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
*
10000856 TCAGGCTTTATGCCTAGCAGGC-TCAGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTA-TGCCGGTGAATTATA
* * * * * * *
10000897 TCAGACCTTATGTCTAGCAGGCTTTGTGTCGGTGAAATGTA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
* * **
10000938 TCGGGCTTTGTGCCTAGCAGGCTTTATGCCGGTGTTTTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
10000979 -CAAGGCTTTATG
1 TC-AGGCTTTATG
10000991 TTCTATAAAT
Statistics
Matches: 109, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
40 3 0.03
41 105 0.96
42 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.34
Consensus pattern (41 bp):
TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
Found at i:10001930 original size:139 final size:139
Alignment explanation
Indices: 10001775--10002054 Score: 348
Period size: 139 Copynumber: 2.0 Consensus size: 139
10001765 ATGTATTGTG
* * * *
10001775 TATATGTTGCCCATTTGTTATATATATACTGTTCAATCTTGGTGTAAAAATACTGCTCAATTTGG
1 TATATGTTGCCCATTTGCTATATATATACTGTTAAATCTTGGTGTAAAAATACTACTAAATTTGG
* * * * * *
10001840 TATGTATATGTTTCCTAATTGTTGTATATCTATGCTGT-TAAATTTTGGTGTA-AAGTGCTGTTA
66 TATGTATATGCTGCCCAATTGTTGTATA--TAAGCTGTCCAAATTTTGGTGTATAAATGCTGTTA
10001903 AATTTGGTATA
129 AATTTGGTATA
* * * * * * * *
10001914 TATATGTTGTCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTATTAAATTTGG
1 TATATGTTGCCCATTTGCTATATATATACTGTTAAATCTTGGTGTAAAAATACTACTAAATTTGG
* *
10001979 TATGTATATGCTGCCCATTTGTTGTATATAAGCTGTCCAAATTTTGGTGTATAAATGCTGTTTAA
66 TATGTATATGCTGCCCAATTGTTGTATATAAGCTGTCCAAATTTTGGTGTATAAATGCTGTTAAA
10002044 TTTGGTATA
131 TTTGGTATA
10002053 TA
1 TA
10002055 ATTGCTATTC
Statistics
Matches: 119, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
137 7 0.06
138 13 0.11
139 99 0.83
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.46
Consensus pattern (139 bp):
TATATGTTGCCCATTTGCTATATATATACTGTTAAATCTTGGTGTAAAAATACTACTAAATTTGG
TATGTATATGCTGCCCAATTGTTGTATATAAGCTGTCCAAATTTTGGTGTATAAATGCTGTTAAA
TTTGGTATA
Found at i:10001936 original size:70 final size:69
Alignment explanation
Indices: 10001775--10002054 Score: 319
Period size: 70 Copynumber: 4.0 Consensus size: 69
10001765 ATGTATTGTG
* * * * * * *
10001775 TATATGTTGCCCATTTGTTATATATATACTGTTCAATCTTGGTGTAAAAATACTGCTCAATTTGG
1 TATATGTTGCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAATGCTGTTAAATTTGG
*
10001840 TATG
66 TATA
* * * *
10001844 TATATGTTTCCTAATTGTTGTATATCTATGCTGTTAAATTTTGGTGT-AAAGTGCTGTTAAATTT
1 TATATGTTGCCCATTTGTTGTATA--TATGCTGTTAAATTTTGGTGTAAAAATGCTGTTAAATTT
10001908 GGTATA
64 GGTATA
* * * * *
10001914 TATATGTTGTCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTATTAAATTTGG
1 TATATGTTGCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAATGCTGTTAAATTTGG
*
10001979 TATG
66 TATA
* * * * *
10001983 TATATGCTGCCCATTTGTTGTATATAAGCTGTCCAAATTTTGGTGTATAAATGCTGTTTAATTTG
1 TATATGTTGCCCATTTGTTGTATATATGCTGT-TAAATTTTGGTGTAAAAATGCTGTTAAATTTG
10002048 GTATA
65 GTATA
10002053 TA
1 TA
10002055 ATTGCTATTC
Statistics
Matches: 178, Mismatches: 29, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
68 21 0.12
69 68 0.38
70 71 0.40
71 18 0.10
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.46
Consensus pattern (69 bp):
TATATGTTGCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAATGCTGTTAAATTTGG
TATA
Found at i:10002047 original size:23 final size:23
Alignment explanation
Indices: 10001871--10002078 Score: 115
Period size: 23 Copynumber: 9.0 Consensus size: 23
10001861 TTGTATATCT
10001871 ATGCTGTTAAATTTTGGTGTA-AA
1 ATGCTGTTAAA-TTTGGTGTATAA
* * *
10001894 GTGCTGTTAAATTTGGTATATAT
1 ATGCTGTTAAATTTGGTGTATAA
* * *
10001917 ATGTTGTCT--ATTTGCTGTATAT
1 ATGCTGT-TAAATTTGGTGTATAA
10001939 ATGCTGTTAAATTTTGGTGTA-AA
1 ATGCTGTTAAA-TTTGGTGTATAA
* * * *
10001962 AGTGCTATTAAATTTGGTATGTAT
1 A-TGCTGTTAAATTTGGTGTATAA
*** *
10001986 ATGCTG-CCCATTTGTTGTATATA
1 ATGCTGTTAAATTTGGTGTATA-A
*
10002009 A-GCTGTCCAAATTTTGGTGTATAA
1 ATGCTGT-TAAA-TTTGGTGTATAA
* *
10002033 ATGCTGTTTAATTTGGTATATAA
1 ATGCTGTTAAATTTGGTGTATAA
* * *
10002056 TTGCTATTCAAA-TTGATGTATAA
1 ATGCTGTT-AAATTTGGTGTATAA
10002079 GAGTTGTCCA
Statistics
Matches: 139, Mismatches: 33, Indels: 26
0.70 0.17 0.13
Matches are distributed among these distances:
21 1 0.01
22 38 0.27
23 57 0.41
24 28 0.20
25 15 0.11
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.45
Consensus pattern (23 bp):
ATGCTGTTAAATTTGGTGTATAA
Found at i:10004546 original size:9 final size:9
Alignment explanation
Indices: 10004532--10004559 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
10004522 ACCAACTTGC
10004532 AATCATATA
1 AATCATATA
10004541 AATCATATA
1 AATCATATA
10004550 AATCATATA
1 AATCATATA
10004559 A
1 A
10004560 TATAAGTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
AATCATATA
Found at i:10005972 original size:22 final size:21
Alignment explanation
Indices: 10005939--10005980 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10005929 TAATTTTACC
*
10005939 AAAAATCAATCAACA-AAGGAG
1 AAAAAACAATC-ACATAAGGAG
10005960 AAAAAACATATCACATAAGGA
1 AAAAAACA-ATCACATAAGGA
10005981 TTATAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.62, C:0.14, G:0.12, T:0.12
Consensus pattern (21 bp):
AAAAAACAATCACATAAGGAG
Found at i:10008532 original size:13 final size:14
Alignment explanation
Indices: 10008506--10008536 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
10008496 CGAACCAAAT
10008506 AAAATAAAACTAAA
1 AAAATAAAACTAAA
10008520 AAAATAAAA-TAAA
1 AAAATAAAACTAAA
10008533 AAAA
1 AAAA
10008537 GGATAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (14 bp):
AAAATAAAACTAAA
Found at i:10010129 original size:44 final size:44
Alignment explanation
Indices: 10010073--10010367 Score: 204
Period size: 44 Copynumber: 6.8 Consensus size: 44
10010063 GGTGGCTTAA
* * * *
10010073 ATCTGCTTCACTATTGTTTAGGAAGATAAGATTTACCGTCTTCG
1 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACCGTCTTCG
* * * * *
10010117 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTG
1 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACCGTCTTCG
* * * ** * **
10010161 ACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTAGTGGCTTAA
1 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACCGTCTTCG
* *
10010204 ATCTGCTTCACTACTGCTTAGGAAGATGAGAT-T-CGCTGTCTTCG
1 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTAC-C-GTCTTCG
* * * * * *
10010248 ATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAACATCTTTG
1 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACCGTCTTCG
* * * ** * **
10010292 ACCTGCTCCAGTACTGCTTAAGG-AGATAGGA-CTAGTGGCTTAA
1 ATCTGCTCCACTACTGCTT-AGGAAGATAAGATCTACCGTCTTCG
* * *
10010335 ATCTGCTTCACTACTGCTTAGGGAGATGAGATC
1 ATCTGCTCCACTACTGCTTAGGAAGATAAGATC
10010368 CTTTATTTTA
Statistics
Matches: 195, Mismatches: 48, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
42 3 0.02
43 61 0.31
44 126 0.65
45 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACCGTCTTCG
Found at i:10010230 original size:131 final size:131
Alignment explanation
Indices: 10010032--10010366 Score: 553
Period size: 131 Copynumber: 2.6 Consensus size: 131
10010022 TTGATGCGAT
* * * * *
10010032 CTGCTCCACTACTGCTTAGGGAGATAGTAGTGGTGGCTTAAATCTGCTTCACTATTGTTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * *
10010097 GATAAGATTTACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
66 GATGAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAACATCTTTGA
10010162 C
131 C
10010163 CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* *
10010228 GATGAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAACATCTTTGA
66 GATGAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAACATCTTTGA
10010293 C
131 C
* * *
10010294 CTGCTCCAGTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGGA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
10010359 GATGAGAT
66 GATGAGAT
10010367 CCTTTATTTT
Statistics
Matches: 191, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 191 1.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (131 bp):
CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
GATGAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAACATCTTTGA
C
Found at i:10010339 original size:87 final size:87
Alignment explanation
Indices: 10010029--10010361 Score: 285
Period size: 87 Copynumber: 3.8 Consensus size: 87
10010019 GACTTGATGC
* * * * * * *
10010029 GATCTGCTCCACTACTGCTTAGGGAGATAGTAGTGGTGGCTTAAATCTGCTTCACTATTGTTTAG
1 GATCTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTCCACTACTGCTTAG
* * * * *
10010094 GAAGATAAGATTTACCGTCTTC
66 GGAGATAGGATCTAACGTCTTA
* **** ** *
10010116 GATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGACCTGCTCCACTACTGCTTA
1 GATCTGCTCCACTACTGCTTAAGGAGATAGGA-CTAGTGGCTTAAATCTGCTCCACTACTGCTTA
** *
10010181 GGGAGATAGGA-CTAGTGGCTTA
65 GGGAGATAGGATCTAACGTCTTA
* * * * * **
10010203 AATCTGCTTCACTACTGCTT-AGGAAGAT-GAGATTCGCTGTCTTCGATCTGCTCCACTACTGCT
1 GATCTGCTCCACTACTGCTTAAGG-AGATAG-GACTAG-TGGCTTAAATCTGCTCCACTACTGCT
* * *
10010266 TAGGGAGACAGGATCTAACATCTTT
63 TAGGGAGATAGGATCTAACGTCTTA
* * *
10010291 GACCTGCTCCAGTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAG
1 GATCTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTCCACTACTGCTTAG
10010356 GGAGAT
66 GGAGAT
10010362 GAGATCCTTT
Statistics
Matches: 192, Mismatches: 47, Indels: 14
0.76 0.19 0.06
Matches are distributed among these distances:
86 4 0.02
87 125 0.65
88 59 0.31
89 4 0.02
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (87 bp):
GATCTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTCCACTACTGCTTAG
GGAGATAGGATCTAACGTCTTA
Found at i:10010402 original size:131 final size:131
Alignment explanation
Indices: 10010032--10010410 Score: 476
Period size: 131 Copynumber: 2.9 Consensus size: 131
10010022 TTGATGCGAT
* * * * * *
10010032 CTGCTCCACTACTGCTTAGGGAGATAGTAGTGGTGGCTTAAATCTGCTTCACTATTGTTTAGGAA
1 CTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* ** * * * * *
10010097 GATAAGATTTACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
66 GATGAGATTCGCTGTCTTCAACCCGCTCCACTACTACTTAGGGAGATAGGATCTAACATCTTTGA
10010162 C
131 C
*
10010163 CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
1 CTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * * * *
10010228 GATGAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAACATCTTTGA
66 GATGAGATTCGCTGTCTTCAACCCGCTCCACTACTACTTAGGGAGATAGGATCTAACATCTTTGA
10010293 C
131 C
* *
10010294 CTGCTCCAGTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGGA
1 CTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * * *
10010359 GATGAGA-TC-CTTTATTTTAACCCGCTCCACT-GTAACTTCAGGGAGATAGGAT
66 GATGAGATTCGCTGT-CTTCAACCCGCTCCACTACT-ACTT-AGGGAGATAGGAT
10010411 TACTAGCTCC
Statistics
Matches: 223, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
129 4 0.02
130 17 0.08
131 202 0.91
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (131 bp):
CTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
GATGAGATTCGCTGTCTTCAACCCGCTCCACTACTACTTAGGGAGATAGGATCTAACATCTTTGA
C
Found at i:10010491 original size:90 final size:90
Alignment explanation
Indices: 10010383--10011083 Score: 379
Period size: 90 Copynumber: 7.9 Consensus size: 90
10010373 TTTTAACCCG
* * * *
10010383 CTCCACTGTAACTTCAGGGAGATAGGATTACTAGCTCCAATCTGCTCCATTGTAACCTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
*
10010448 ATAAGATCTGAAATTCTTCGGTCTA
66 ATAAGATCTGAAATTCTTCGATCTA
* * * * *
10010473 CTCCACTATAACCTCAGGGAGATAAGACTTGCATA--TTCAACCTGCCCCACTGTAACTTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGA-TTAC-TAGCTTCAATCTGCTCCACTGTAACCTCAGGG
* * * *
10010536 AGATAAGGTTTG---TGGCTTCGATCTG
64 AGATAAGATCTGAAAT-TCTTCGATCTA
* * * * ** *
10010561 CTCCTCTGTAATCTCAGGGAGATAAGATCTGA-AATTCTTCGGTCTACTCCACTGTAACCTCAGG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-T-ACTA-GCTTCAATCTGCTCCACTGTAACCTCAGG
* * * * *
10010625 GAGATAAGA-CTTG-CA-TATTCAACCTG
63 GAGATAAGATC-TGAAATTCTTCGATCTA
* * * * ** * * * *
10010651 CCCCACTGTAACTTCAGGGACATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
*
10010716 ATAAGATCTAAAATTCTTCGATCTA
66 ATAAGATCTGAAATTCTTCGATCTA
* * * *
10010741 CTCCACTGTAACCTCAGGGAGATAAGACTTGCATA--TTCAACCTGCCCCACTGTAACTTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGA-TTAC-TAGCTTCAATCTGCTCCACTGTAACCTCAGGG
* * * *
10010804 AGATAAGGTTTG---TGGCTTCGATCTG
64 AGATAAGATCTGAAAT-TCTTCGATCTA
* * * ** * ** *
10010829 CTCCTCTGTAATCTCAGGGAGATAAGATCAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGATTACTA-GCTTCAATCTGCTCCACTGTAACCTCAGGGA
* * * * *
10010894 GATAAGA-CTTG-CA-TATTCAACCTG
65 GATAAGATC-TGAAATTCTTCGATCTA
* * * * * * * * * * *
10010918 CCCCATTGTAACTTCAGAGAGATAGGATCCT-TTA-TTTTAATCCGCTCCACTATAACTTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGAT--TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
** * * *
10010981 AGATTGGA--T--AGTGTCCTCGATCTG
64 AGATAAGATCTGAAAT-TCTTCGATCTA
* * * *
10011005 CTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCGTCAATCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
10011069 GATAAGATCTGAAAT
65 GATAAGATCTGAAAT
10011084 ATTCACTGAT
Statistics
Matches: 447, Mismatches: 131, Indels: 65
0.70 0.20 0.10
Matches are distributed among these distances:
86 5 0.01
87 62 0.14
88 128 0.29
89 63 0.14
90 179 0.40
91 7 0.02
92 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (90 bp):
CTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
ATAAGATCTGAAATTCTTCGATCTA
Found at i:10010529 original size:134 final size:134
Alignment explanation
Indices: 10010385--10010941 Score: 958
Period size: 134 Copynumber: 4.2 Consensus size: 134
10010375 TTAACCCGCT
** * * * *
10010385 CCACTGTAACTTCAGGGAGAT-AGGATTACTAGCTCCAATCTGCTCCAT-TGTAACCTCAGGGAG
1 CCACTGTAACTTCAGGGAGATAAGG-TTTGTGGCTTCGATCTGCTCC-TCTGTAATCTCAGGGAG
* *
10010448 ATAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACTTGCATATTCAA
64 ATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAA
10010513 CCTGCC
129 CCTGCC
10010519 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
1 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
*
10010584 AAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
66 AAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
10010649 TGCC
131 TGCC
*
10010653 CCACTGTAACTTCAGGGACATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
1 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
*
10010718 AAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
66 AAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
10010783 TGCC
131 TGCC
10010787 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
1 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
10010852 AAGATC-AAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
66 AAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
10010916 TGCC
131 TGCC
* *
10010920 CCATTGTAACTTCAGAGAGATA
1 CCACTGTAACTTCAGGGAGATA
10010942 GGATCCTTTA
Statistics
Matches: 407, Mismatches: 14, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
133 82 0.20
134 322 0.79
135 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (134 bp):
CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
AAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
TGCC
Found at i:10011077 original size:44 final size:42
Alignment explanation
Indices: 10010382--10011078 Score: 405
Period size: 44 Copynumber: 15.7 Consensus size: 42
10010372 ATTTTAACCC
* * * * *
10010382 GCTCCACTGTAACTTCAGGGAGATAGGATTACTAGCTCCAATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGA-T-CTTGCTTCGATCT
* * *
10010426 GCTCCATTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT----TGCTTCGATCT
* * * *
10010472 ACTCCACTATAACCTCAGGGAGATAAGA-CTTGCATATTCAACCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCTTGC---TTCGATCT
* * * *
10010516 GCCCCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT-T-GCTTCGATCT
* * * *
10010560 GCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT----TGCTTCGATCT
* * *
10010606 ACTCCACTGTAACCTCAGGGAGATAAGA-CTTGCATATTCAACCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCTTGC---TTCGATCT
* * * * *
10010650 GCCCCACTGTAACTTCAGGGACATAAGGTTTGTGGCTTCGATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT-T-GCTTCGATCT
* * *
10010694 GCTCCTCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT----TGCTTCGATCT
* * *
10010740 ACTCCACTGTAACCTCAGGGAGATAAGA-CTTGCATATTCAACCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCTTGC---TTCGATCT
* * * *
10010784 GCCCCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT-T-GCTTCGATCT
* * *
10010828 GCTCCTCTGTAATCTCAGGGAGATAAGATCAAAATT-CTTCGGTCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATC----TTGCTTCGATCT
* * *
10010873 ACTCCACTGTAACCTCAGGGAGATAAGA-CTTGCATATTCAACCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCTTGC---TTCGATCT
* * * * * ** ** *
10010917 GCCCCATTGTAACTTCAGAGAGATAGGATCCTTTATTTTAATCC
1 GCTCCACTGTAACCTCAGGGAGATAAGAT-C-TTGCTTCGATCT
* * ** ** *
10010961 GCTCCACTATAACTTCAGGGAGATTGGATAGTGTCCTCGATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCTTG-CTTCGATCT
* * * *
10011004 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCGTCAATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT-T-GCTTCGATCT
10011048 GCTCCACTGTAACCTCAGGGAGATAAGATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT
10011079 GAAATATTCA
Statistics
Matches: 493, Mismatches: 118, Indels: 84
0.71 0.17 0.12
Matches are distributed among these distances:
40 2 0.00
41 7 0.01
42 3 0.01
43 28 0.06
44 296 0.60
45 43 0.09
46 102 0.21
47 11 0.02
48 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (42 bp):
GCTCCACTGTAACCTCAGGGAGATAAGATCTTGCTTCGATCT
Found at i:10012342 original size:7 final size:7
Alignment explanation
Indices: 10012324--10012363 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
10012314 TTAGCCTCTC
10012324 CATTTTT
1 CATTTTT
10012331 C-TTTTT
1 CATTTTT
10012337 CATTTTT
1 CATTTTT
10012344 CA-TTTT
1 CATTTTT
10012350 CATTTTT
1 CATTTTT
10012357 CATTTTT
1 CATTTTT
10012364 TTTGACTCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 12 0.39
7 19 0.61
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.72
Consensus pattern (7 bp):
CATTTTT
Found at i:10012342 original size:13 final size:13
Alignment explanation
Indices: 10012324--10012363 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
10012314 TTAGCCTCTC
10012324 CATTTTTCTTTTT
1 CATTTTTCTTTTT
*
10012337 CATTTTTCATTTT
1 CATTTTTCTTTTT
10012350 CATTTTTCATTTTT
1 CATTTTTC-TTTTT
10012364 TTTGACTCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 20 0.83
14 4 0.17
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.72
Consensus pattern (13 bp):
CATTTTTCTTTTT
Found at i:10012347 original size:20 final size:20
Alignment explanation
Indices: 10012327--10012363 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10012317 GCCTCTCCAT
10012327 TTTTC-TTTTTCATTTTTCA
1 TTTTCATTTTTCATTTTTCA
10012346 TTTTCATTTTTCATTTTT
1 TTTTCATTTTTCATTTTT
10012364 TTTGACTCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTCATTTTTCATTTTTCA
Found at i:10013343 original size:21 final size:21
Alignment explanation
Indices: 10013312--10013365 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
10013302 TTCATTTTAA
*
10013312 TTTGATTTTTTCTTCTTTCT-TT
1 TTTG-TTTTTTCTTATTT-TATT
*
10013334 TTTGTTTTTTTTTATTTTATT
1 TTTGTTTTTTCTTATTTTATT
*
10013355 TTTGATTTTTC
1 TTTGTTTTTTC
10013366 ATTTCCTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 1 0.04
21 22 0.81
22 4 0.15
ACGTcount: A:0.07, C:0.07, G:0.06, T:0.80
Consensus pattern (21 bp):
TTTGTTTTTTCTTATTTTATT
Found at i:10017465 original size:27 final size:27
Alignment explanation
Indices: 10017435--10017608 Score: 212
Period size: 27 Copynumber: 6.5 Consensus size: 27
10017425 TATCGAGTCT
* * * *
10017435 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAGTCAAATC
*
10017462 GCACACTTAGTGCTACATAATCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
10017489 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTCAAA-TC
* *
10017517 GCACACTTAGTGC-GCATGGTC-AATC
1 GCACACTTAGTGCTACATAGTCAAATC
* *
10017542 GCACACTTAGTGC-ATCATATTC-ATTC
1 GCACACTTAGTGCTA-CATAGTCAAATC
*
10017568 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
10017595 GCACACTTAGTGCT
1 GCACACTTAGTGCT
10017609 GTACAATTTA
Statistics
Matches: 130, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
25 15 0.12
26 29 0.22
27 71 0.55
28 15 0.12
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAGTCAAATC
Found at i:10017595 original size:53 final size:53
Alignment explanation
Indices: 10017435--10017608 Score: 219
Period size: 53 Copynumber: 3.3 Consensus size: 53
10017425 TATCGAGTCT
* * * *
10017435 GCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAATC
1 GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC-ACATAGTCAAATC
* *
10017489 GCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCGCATGGTC-AATC
1 GCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCACATAGTCAAATC
* *
10017542 GCACACTTAGTGC-ATCATATTC-ATTCGCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGC-ACATAGTCAAATC
10017595 GCACACTTAGTGCT
1 GCACACTTAGTGCT
10017609 GTACAATTTA
Statistics
Matches: 105, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
51 16 0.15
52 7 0.07
53 40 0.38
54 24 0.23
55 18 0.17
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (53 bp):
GCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCACATAGTCAAATC
Found at i:10022482 original size:23 final size:23
Alignment explanation
Indices: 10022439--10022484 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
10022429 TCTGATTATG
*
10022439 TTTAATTTTTGGGCTTATTGGGC
1 TTTAATTTTTGGGCTCATTGGGC
*
10022462 TTTATTTTTTGGGC-CAGTTGGGC
1 TTTAATTTTTGGGCTCA-TTGGGC
10022485 CATTTGTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.11, C:0.11, G:0.28, T:0.50
Consensus pattern (23 bp):
TTTAATTTTTGGGCTCATTGGGC
Found at i:10022934 original size:44 final size:44
Alignment explanation
Indices: 10022878--10023172 Score: 204
Period size: 44 Copynumber: 6.8 Consensus size: 44
10022868 GGTGGCTTAA
* * * *
10022878 ATCTGCTTCACTATTGTTTAGGAAGATAAGATTTACCGTCTTCG
1 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACCGTCTTCG
* * * * *
10022922 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTG
1 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACCGTCTTCG
* * * ** * **
10022966 ACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTAGTGGCTTAA
1 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACCGTCTTCG
* *
10023009 ATCTGCTTCACTACTGCTTAGGAAGATGAGAT-T-CGCTGTCTTCG
1 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTAC-C-GTCTTCG
* * * * * *
10023053 ATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAACATCTTTG
1 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACCGTCTTCG
* * * ** * **
10023097 ACCTGCTCCAGTACTGCTTAAGG-AGATAGGA-CTAGTGGCTTAA
1 ATCTGCTCCACTACTGCTT-AGGAAGATAAGATCTACCGTCTTCG
* * *
10023140 ATCTGCTTCACTACTGCTTAGGGAGATGAGATC
1 ATCTGCTCCACTACTGCTTAGGAAGATAAGATC
10023173 CTTTATTTTA
Statistics
Matches: 195, Mismatches: 48, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
42 3 0.02
43 61 0.31
44 126 0.65
45 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACCGTCTTCG
Found at i:10023035 original size:131 final size:131
Alignment explanation
Indices: 10022837--10023171 Score: 553
Period size: 131 Copynumber: 2.6 Consensus size: 131
10022827 TTGATGCGAT
* * * * *
10022837 CTGCTCCACTACTGCTTAGGGAGATAGTAGTGGTGGCTTAAATCTGCTTCACTATTGTTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * *
10022902 GATAAGATTTACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
66 GATGAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAACATCTTTGA
10022967 C
131 C
10022968 CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* *
10023033 GATGAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAACATCTTTGA
66 GATGAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAACATCTTTGA
10023098 C
131 C
* * *
10023099 CTGCTCCAGTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGGA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
10023164 GATGAGAT
66 GATGAGAT
10023172 CCTTTATTTT
Statistics
Matches: 191, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 191 1.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (131 bp):
CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
GATGAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAACATCTTTGA
C
Found at i:10023144 original size:87 final size:87
Alignment explanation
Indices: 10022834--10023166 Score: 285
Period size: 87 Copynumber: 3.8 Consensus size: 87
10022824 GACTTGATGC
* * * * * * *
10022834 GATCTGCTCCACTACTGCTTAGGGAGATAGTAGTGGTGGCTTAAATCTGCTTCACTATTGTTTAG
1 GATCTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTCCACTACTGCTTAG
* * * * *
10022899 GAAGATAAGATTTACCGTCTTC
66 GGAGATAGGATCTAACGTCTTA
* **** ** *
10022921 GATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGACCTGCTCCACTACTGCTTA
1 GATCTGCTCCACTACTGCTTAAGGAGATAGGA-CTAGTGGCTTAAATCTGCTCCACTACTGCTTA
** *
10022986 GGGAGATAGGA-CTAGTGGCTTA
65 GGGAGATAGGATCTAACGTCTTA
* * * * * **
10023008 AATCTGCTTCACTACTGCTT-AGGAAGAT-GAGATTCGCTGTCTTCGATCTGCTCCACTACTGCT
1 GATCTGCTCCACTACTGCTTAAGG-AGATAG-GACTAG-TGGCTTAAATCTGCTCCACTACTGCT
* * *
10023071 TAGGGAGACAGGATCTAACATCTTT
63 TAGGGAGATAGGATCTAACGTCTTA
* * *
10023096 GACCTGCTCCAGTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAG
1 GATCTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTCCACTACTGCTTAG
10023161 GGAGAT
66 GGAGAT
10023167 GAGATCCTTT
Statistics
Matches: 192, Mismatches: 47, Indels: 14
0.76 0.19 0.06
Matches are distributed among these distances:
86 4 0.02
87 125 0.65
88 59 0.31
89 4 0.02
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (87 bp):
GATCTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTCCACTACTGCTTAG
GGAGATAGGATCTAACGTCTTA
Found at i:10023207 original size:131 final size:131
Alignment explanation
Indices: 10022837--10023215 Score: 476
Period size: 131 Copynumber: 2.9 Consensus size: 131
10022827 TTGATGCGAT
* * * * * *
10022837 CTGCTCCACTACTGCTTAGGGAGATAGTAGTGGTGGCTTAAATCTGCTTCACTATTGTTTAGGAA
1 CTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* ** * * * * *
10022902 GATAAGATTTACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
66 GATGAGATTCGCTGTCTTCAACCCGCTCCACTACTACTTAGGGAGATAGGATCTAACATCTTTGA
10022967 C
131 C
*
10022968 CTGCTCCACTACTGCTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
1 CTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * * * *
10023033 GATGAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAACATCTTTGA
66 GATGAGATTCGCTGTCTTCAACCCGCTCCACTACTACTTAGGGAGATAGGATCTAACATCTTTGA
10023098 C
131 C
* *
10023099 CTGCTCCAGTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGGA
1 CTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * * *
10023164 GATGAGA-TC-CTTTATTTTAACCCGCTCCACT-GTAACTTCAGGGAGATAGGAT
66 GATGAGATTCGCTGT-CTTCAACCCGCTCCACTACT-ACTT-AGGGAGATAGGAT
10023216 TACTAGCTCC
Statistics
Matches: 223, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
129 4 0.02
130 17 0.08
131 202 0.91
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (131 bp):
CTGCTCCACTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
GATGAGATTCGCTGTCTTCAACCCGCTCCACTACTACTTAGGGAGATAGGATCTAACATCTTTGA
C
Found at i:10023296 original size:90 final size:90
Alignment explanation
Indices: 10023188--10023888 Score: 379
Period size: 90 Copynumber: 7.9 Consensus size: 90
10023178 TTTTAACCCG
* * * *
10023188 CTCCACTGTAACTTCAGGGAGATAGGATTACTAGCTCCAATCTGCTCCATTGTAACCTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
*
10023253 ATAAGATCTGAAATTCTTCGGTCTA
66 ATAAGATCTGAAATTCTTCGATCTA
* * * * *
10023278 CTCCACTATAACCTCAGGGAGATAAGACTTGCATA--TTCAACCTGCCCCACTGTAACTTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGA-TTAC-TAGCTTCAATCTGCTCCACTGTAACCTCAGGG
* * * *
10023341 AGATAAGGTTTG---TGGCTTCGATCTG
64 AGATAAGATCTGAAAT-TCTTCGATCTA
* * * * ** *
10023366 CTCCTCTGTAATCTCAGGGAGATAAGATCTGA-AATTCTTCGGTCTACTCCACTGTAACCTCAGG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-T-ACTA-GCTTCAATCTGCTCCACTGTAACCTCAGG
* * * * *
10023430 GAGATAAGA-CTTG-CA-TATTCAACCTG
63 GAGATAAGATC-TGAAATTCTTCGATCTA
* * * * ** * * * *
10023456 CCCCACTGTAACTTCAGGGACATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
*
10023521 ATAAGATCTAAAATTCTTCGATCTA
66 ATAAGATCTGAAATTCTTCGATCTA
* * * *
10023546 CTCCACTGTAACCTCAGGGAGATAAGACTTGCATA--TTCAACCTGCCCCACTGTAACTTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGA-TTAC-TAGCTTCAATCTGCTCCACTGTAACCTCAGGG
* * * *
10023609 AGATAAGGTTTG---TGGCTTCGATCTG
64 AGATAAGATCTGAAAT-TCTTCGATCTA
* * * ** * ** *
10023634 CTCCTCTGTAATCTCAGGGAGATAAGATCAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGATTACTA-GCTTCAATCTGCTCCACTGTAACCTCAGGGA
* * * * *
10023699 GATAAGA-CTTG-CA-TATTCAACCTG
65 GATAAGATC-TGAAATTCTTCGATCTA
* * * * * * * * * * *
10023723 CCCCATTGTAACTTCAGAGAGATAGGATCCT-TTA-TTTTAATCCGCTCCACTATAACTTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGAT--TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGG
** * * *
10023786 AGATTGGA--T--AGTGTCCTCGATCTG
64 AGATAAGATCTGAAAT-TCTTCGATCTA
* * * *
10023810 CTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCGTCAATCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGAT-TACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
10023874 GATAAGATCTGAAAT
65 GATAAGATCTGAAAT
10023889 ATTCACTGAT
Statistics
Matches: 447, Mismatches: 131, Indels: 65
0.70 0.20 0.10
Matches are distributed among these distances:
86 5 0.01
87 62 0.14
88 128 0.29
89 63 0.14
90 179 0.40
91 7 0.02
92 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (90 bp):
CTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
ATAAGATCTGAAATTCTTCGATCTA
Found at i:10023334 original size:134 final size:134
Alignment explanation
Indices: 10023190--10023746 Score: 958
Period size: 134 Copynumber: 4.2 Consensus size: 134
10023180 TTAACCCGCT
** * * * *
10023190 CCACTGTAACTTCAGGGAGAT-AGGATTACTAGCTCCAATCTGCTCCAT-TGTAACCTCAGGGAG
1 CCACTGTAACTTCAGGGAGATAAGG-TTTGTGGCTTCGATCTGCTCC-TCTGTAATCTCAGGGAG
* *
10023253 ATAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACTTGCATATTCAA
64 ATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAA
10023318 CCTGCC
129 CCTGCC
10023324 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
1 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
*
10023389 AAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
66 AAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
10023454 TGCC
131 TGCC
*
10023458 CCACTGTAACTTCAGGGACATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
1 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
*
10023523 AAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
66 AAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
10023588 TGCC
131 TGCC
10023592 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
1 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
10023657 AAGATC-AAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
66 AAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
10023721 TGCC
131 TGCC
* *
10023725 CCATTGTAACTTCAGAGAGATA
1 CCACTGTAACTTCAGGGAGATA
10023747 GGATCCTTTA
Statistics
Matches: 407, Mismatches: 14, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
133 82 0.20
134 322 0.79
135 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (134 bp):
CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
AAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
TGCC
Found at i:10023882 original size:44 final size:42
Alignment explanation
Indices: 10023187--10023883 Score: 405
Period size: 44 Copynumber: 15.7 Consensus size: 42
10023177 ATTTTAACCC
* * * * *
10023187 GCTCCACTGTAACTTCAGGGAGATAGGATTACTAGCTCCAATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGA-T-CTTGCTTCGATCT
* * *
10023231 GCTCCATTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT----TGCTTCGATCT
* * * *
10023277 ACTCCACTATAACCTCAGGGAGATAAGA-CTTGCATATTCAACCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCTTGC---TTCGATCT
* * * *
10023321 GCCCCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT-T-GCTTCGATCT
* * * *
10023365 GCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT----TGCTTCGATCT
* * *
10023411 ACTCCACTGTAACCTCAGGGAGATAAGA-CTTGCATATTCAACCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCTTGC---TTCGATCT
* * * * *
10023455 GCCCCACTGTAACTTCAGGGACATAAGGTTTGTGGCTTCGATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT-T-GCTTCGATCT
* * *
10023499 GCTCCTCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT----TGCTTCGATCT
* * *
10023545 ACTCCACTGTAACCTCAGGGAGATAAGA-CTTGCATATTCAACCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCTTGC---TTCGATCT
* * * *
10023589 GCCCCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT-T-GCTTCGATCT
* * *
10023633 GCTCCTCTGTAATCTCAGGGAGATAAGATCAAAATT-CTTCGGTCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATC----TTGCTTCGATCT
* * *
10023678 ACTCCACTGTAACCTCAGGGAGATAAGA-CTTGCATATTCAACCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCTTGC---TTCGATCT
* * * * * ** ** *
10023722 GCCCCATTGTAACTTCAGAGAGATAGGATCCTTTATTTTAATCC
1 GCTCCACTGTAACCTCAGGGAGATAAGAT-C-TTGCTTCGATCT
* * ** ** *
10023766 GCTCCACTATAACTTCAGGGAGATTGGATAGTGTCCTCGATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCTTG-CTTCGATCT
* * * *
10023809 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCGTCAATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT-T-GCTTCGATCT
10023853 GCTCCACTGTAACCTCAGGGAGATAAGATCT
1 GCTCCACTGTAACCTCAGGGAGATAAGATCT
10023884 GAAATATTCA
Statistics
Matches: 493, Mismatches: 118, Indels: 84
0.71 0.17 0.12
Matches are distributed among these distances:
40 2 0.00
41 7 0.01
42 3 0.01
43 28 0.06
44 296 0.60
45 43 0.09
46 102 0.21
47 11 0.02
48 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (42 bp):
GCTCCACTGTAACCTCAGGGAGATAAGATCTTGCTTCGATCT
Found at i:10025144 original size:13 final size:13
Alignment explanation
Indices: 10025126--10025164 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
10025116 TTAGCCTCTC
10025126 CATTTTTCTTTTT
1 CATTTTTCTTTTT
*
10025139 CA-TTTTCATTTT
1 CATTTTTCTTTTT
10025151 CATTTTTCATTTTT
1 CATTTTTC-TTTTT
10025165 TTTGACTCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 11 0.50
13 7 0.32
14 4 0.18
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (13 bp):
CATTTTTCTTTTT
Found at i:10025150 original size:12 final size:13
Alignment explanation
Indices: 10025126--10025163 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
10025116 TTAGCCTCTC
*
10025126 CATTTTTCTTTTT
1 CATTTTTCATTTT
10025139 CA-TTTTCATTTT
1 CATTTTTCATTTT
10025151 CATTTTTCATTTT
1 CATTTTTCATTTT
10025164 TTTTGACTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (13 bp):
CATTTTTCATTTT
Found at i:10026124 original size:45 final size:47
Alignment explanation
Indices: 10026075--10026183 Score: 113
Period size: 45 Copynumber: 2.4 Consensus size: 47
10026065 TAGATTTCTC
10026075 TTTTTTCATTC-TTCTTTCTTTT-TCTCATTTTCA-TTTTAATTTTGAT
1 TTTTTTCATTCTTTCTTT-TTTTGT-TCATTTTCATTTTTAATTTTGAT
** * *
10026121 TTTTTTC-TTCTTTCTTTTTTTGTTTTTTTTTATTTTTATTTTTGA-
1 TTTTTTCATTCTTTCTTTTTTTGTTCATTTTCATTTTTAATTTTGAT
*
10026166 TTTTTTCATT-TTCCTTTT
1 TTTTTTCATTCTTTCTTTT
10026184 GACTTTGATT
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
45 27 0.50
46 27 0.50
ACGTcount: A:0.09, C:0.12, G:0.03, T:0.76
Consensus pattern (47 bp):
TTTTTTCATTCTTTCTTTTTTTGTTCATTTTCATTTTTAATTTTGAT
Found at i:10026146 original size:22 final size:23
Alignment explanation
Indices: 10026108--10026172 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
10026098 CTCATTTTCA
* *
10026108 TTTTAATTTTGATTTTTTTCTTCT
1 TTTTATTTTTGA-TTTTTTCTTAT
*
10026132 TTCTT-TTTTTG-TTTTTTTTTAT
1 TT-TTATTTTTGATTTTTTCTTAT
10026154 TTTTATTTTTGATTTTTTC
1 TTTTATTTTTGATTTTTTC
10026173 ATTTTCCTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
21 2 0.06
22 17 0.50
23 6 0.18
24 7 0.21
25 2 0.06
ACGTcount: A:0.09, C:0.06, G:0.05, T:0.80
Consensus pattern (23 bp):
TTTTATTTTTGATTTTTTCTTAT
Found at i:10030275 original size:27 final size:27
Alignment explanation
Indices: 10030245--10030421 Score: 212
Period size: 27 Copynumber: 6.5 Consensus size: 27
10030235 TATCGAGTCT
* * * *
10030245 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAGTCAAATC
*
10030272 GCACACTTAGTGCTACATAATCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
10030299 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTCAAA-TC
** * *
10030327 GCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTACATAGTCAAATC
* **
10030354 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCAAATC
*
10030381 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
10030408 GCACACTTAGTGCT
1 GCACACTTAGTGCT
10030422 GTACAATTTA
Statistics
Matches: 131, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAGTCAAATC
Found at i:10030383 original size:82 final size:81
Alignment explanation
Indices: 10030265--10030420 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
10030255 TGCTATATAA
*
10030265 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
10030330 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
10030347 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
10030411 CACTTAGTGC
65 CACTTAGTGC
10030421 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:10034216 original size:14 final size:15
Alignment explanation
Indices: 10034189--10034222 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
10034179 CGAACCAAAT
*
10034189 AAAACAAAACTAAAA
1 AAAAGAAAACTAAAA
10034204 AAAAGAAAA-TAAAA
1 AAAAGAAAACTAAAA
10034218 AAAAG
1 AAAAG
10034223 GATAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (15 bp):
AAAAGAAAACTAAAA
Found at i:10035742 original size:44 final size:44
Alignment explanation
Indices: 10035639--10035933 Score: 222
Period size: 44 Copynumber: 6.8 Consensus size: 44
10035629 AGACTTGATG
* * * *** *
10035639 CGATCTGCTCCACTACTGCTTAGGGAGATAGTA-GTGGTGGCTT
1 CGATCTGCTCCACTACTGCTTAGGAAGATAGGATCTAACGTCTT
** * * * * *
10035682 AAATCTGCTTCACTACTGTTTAGGAAGATAAGATTTACCGTCTT
1 CGATCTGCTCCACTACTGCTTAGGAAGATAGGATCTAACGTCTT
* *
10035726 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTT
1 CGATCTGCTCCACTACTGCTTAGGAAGATAGGATCTAACGTCTT
* * * ** *
10035770 TGACCTGCTCCACTACTGCCTA-GAGAGATAGGA-CTAGTGGCTT
1 CGATCTGCTCCACTACTGCTTAGGA-AGATAGGATCTAACGTCTT
** * * **
10035813 AAATCTACTTCACTACTGCTTAGGAAGATGAGG-T-TCGCTGTCTT
1 CGATCTGCTCCACTACTGCTTAGGAAGAT-AGGATCTAAC-GTCTT
* * *
10035857 CGATCTGCCCCACTACTGCTTAGGGAGATAGGATCTAACATCTT
1 CGATCTGCTCCACTACTGCTTAGGAAGATAGGATCTAACGTCTT
* * *
10035901 TGACCTGCTCCACTACTGCTTAGGGAGATAGGA
1 CGATCTGCTCCACTACTGCTTAGGAAGATAGGA
10035934 CTGGTGGCTT
Statistics
Matches: 194, Mismatches: 50, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
43 58 0.30
44 134 0.69
45 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (44 bp):
CGATCTGCTCCACTACTGCTTAGGAAGATAGGATCTAACGTCTT
Found at i:10035841 original size:131 final size:131
Alignment explanation
Indices: 10035643--10035977 Score: 544
Period size: 131 Copynumber: 2.6 Consensus size: 131
10035633 TTGATGCGAT
* * *
10035643 CTGCTCCACTACTGCTTAGGGAGATAGTAGTGGTGGCTTAAATCTGCTTCACTACTGTTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * *
10035708 GATAAGATTTACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
66 GATGAGATTCACCGTCTTCGATCTGCCCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
10035773 C
131 C
* * * *
10035774 CTGCTCCACTACTGCCTAGAGAGATAGGACTAGTGGCTTAAATCTACTTCACTACTGCTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
* * *
10035839 GATGAGGTTCGCTGTCTTCGATCTGCCCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
66 GATGAGATTCACCGTCTTCGATCTGCCCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
10035904 C
131 C
*
10035905 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGGA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
10035970 GATGAGAT
66 GATGAGAT
10035978 CCTTTATTTT
Statistics
Matches: 185, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
131 185 1.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (131 bp):
CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
GATGAGATTCACCGTCTTCGATCTGCCCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGA
C
Found at i:10035950 original size:87 final size:87
Alignment explanation
Indices: 10035640--10035972 Score: 301
Period size: 87 Copynumber: 3.8 Consensus size: 87
10035630 GACTTGATGC
* * * *
10035640 GATCTGCTCCACTACTGCTTAGGGAGATAGTAGTGGTGGCTTAAATCTGCTTCACTACTGTTTAG
1 GATCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTCCACTACTGCTTAG
* * * * *
10035705 GAAGATAAGATTTACCGTCTTC
66 GGAGATAGGATCTAACGTCTTA
***** ** * *
10035727 GATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTGACCTGCTCCACTACTGCCTA
1 GATCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAATCTGCTCCACTACTGCTTA
* ** *
10035792 GAGAGATAGGA-CTAGTGGCTTA
65 GGGAGATAGGATCTAACGTCTTA
* * * * * * * ** *
10035814 AATCTACTTCACTACTGCTTAGGAAGATGAGG-TTCGCTGTCTTCGATCTGCCCCACTACTGCTT
1 GATCTGCTCCACTACTGCTTAGGGAGAT-AGGACT-GGTGGCTTAAATCTGCTCCACTACTGCTT
* *
10035878 AGGGAGATAGGATCTAACATCTTT
64 AGGGAGATAGGATCTAACGTCTTA
* *
10035902 GACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAG
1 GATCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTCCACTACTGCTTAG
10035967 GGAGAT
66 GGAGAT
10035973 GAGATCCTTT
Statistics
Matches: 189, Mismatches: 52, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
86 1 0.01
87 127 0.67
88 61 0.32
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (87 bp):
GATCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTCCACTACTGCTTAG
GGAGATAGGATCTAACGTCTTA
Found at i:10036107 original size:90 final size:89
Alignment explanation
Indices: 10035994--10036695 Score: 400
Period size: 90 Copynumber: 7.9 Consensus size: 89
10035984 TTTTAATCCG
* * *
10035994 CTCCACTGTAACTTCAGGGAGATAGGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATTACTA-CTTCAATCTGCTCCACTGTAACCTCAGGGAG
*
10036059 ATAAGATCTGAAATTCTTCGGTCTA
65 ATAAGATCTGAAATTCTTCGATCTA
* * * * *
10036084 CTCCACTATAACCTCAGGGAGATAAGACTTGCATA-TTCAACCTGCCCCACTGTAACTTCAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGA-TTAC-TACTTCAATCTGCTCCACTGTAACCTCAGGGA
* * *
10036148 GATAAGGTTTG---TGGCTTCGATCTA
64 GATAAGATCTGAAAT-TCTTCGATCTA
* * * * ** * *
10036172 CTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-T--ACTACTTCAATCTGCTCCACTGTAACCTCAGGG
* * * * *
10036237 AGATAAGA-CTTG-CA-TATTCAACCTG
63 AGATAAGATC-TGAAATTCTTCGATCTA
* * * * ** * * * *
10036262 CCCCACTGTAACTTCAGGGACATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATTACT-ACTTCAATCTGCTCCACTGTAACCTCAGGGAG
*
10036327 ATAAGATCTAAAATTCTTCGATCTA
65 ATAAGATCTGAAATTCTTCGATCTA
* * * *
10036352 CTCCACTGTAACCTCAGGGAGATAAGACTTGCATA-TTCAACCTGCCCCACTGTAACTTCAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGA-TTAC-TACTTCAATCTGCTCCACTGTAACCTCAGGGA
* * * *
10036416 GATAAGGTTTG---TGGCTTCGATCTG
64 GATAAGATCTGAAAT-TCTTCGATCTA
* * * * ** *
10036440 CTCCTCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-T--ACTACTTCAATCTGCTCCACTGTAACCTCAGGG
* * * * *
10036505 AGATAAGA-CTTG-CA-TATTCAACCTG
63 AGATAAGATC-TGAAATTCTTCGATCTA
* * * * * * * * * *
10036530 CCCCACTGTAACTTCAGAGAGATAGGATCCT-TTATTTTAATCCGCTCCACTATAACTTCAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGAT--TACTACTTCAATCTGCTCCACTGTAACCTCAGGGA
** * * *
10036594 GATTGGA--T--AGTGTCCTCGATCTG
64 GATAAGATCTGAAAT-TCTTCGATCTA
* * * *
10036617 CTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCGTCAATCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGAT-TACT-ACTTCAATCTGCTCCACTGTAACCTCAGGGA
10036681 GATAAGATCTGAAAT
64 GATAAGATCTGAAAT
10036696 ATTCACTGAT
Statistics
Matches: 452, Mismatches: 128, Indels: 63
0.70 0.20 0.10
Matches are distributed among these distances:
86 4 0.01
87 63 0.14
88 130 0.29
89 6 0.01
90 237 0.52
91 9 0.02
92 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (89 bp):
CTCCACTGTAACCTCAGGGAGATAAGATTACTACTTCAATCTGCTCCACTGTAACCTCAGGGAGA
TAAGATCTGAAATTCTTCGATCTA
Found at i:10036596 original size:134 final size:134
Alignment explanation
Indices: 10035996--10036553 Score: 965
Period size: 134 Copynumber: 4.2 Consensus size: 134
10035986 TTAATCCGCT
** * * * * *
10035996 CCACTGTAACTTCAGGGAGAT-AGGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAGA
1 CCACTGTAACTTCAGGGAGATAAGG-TTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGA
*
10036060 TAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACTTGCATATTCAAC
65 TAAGATCTAAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACTTGCATATTCAAC
10036125 CTGCC
130 CTGCC
*
10036130 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTACTCCTCTGTAATCTCAGGGAGAT
1 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
*
10036195 AAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACTTGCATATTCAACC
66 AAGATCTAAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACTTGCATATTCAACC
10036260 TGCC
131 TGCC
*
10036264 CCACTGTAACTTCAGGGACATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
1 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
* *
10036329 AAGATCTAAAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
66 AAGATCTAAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACTTGCATATTCAACC
10036394 TGCC
131 TGCC
10036398 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
1 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
*
10036463 AAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACC
66 AAGATCTAAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACTTGCATATTCAACC
10036528 TGCC
131 TGCC
*
10036532 CCACTGTAACTTCAGAGAGATA
1 CCACTGTAACTTCAGGGAGATA
10036554 GGATCCTTTA
Statistics
Matches: 407, Mismatches: 16, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
134 404 0.99
135 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (134 bp):
CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
AAGATCTAAAATTCTTCGGTCTACTCCACTATAACCTCAGGGAGATAAGACTTGCATATTCAACC
TGCC
Found at i:10036670 original size:44 final size:41
Alignment explanation
Indices: 10035988--10036690 Score: 343
Period size: 44 Copynumber: 15.9 Consensus size: 41
10035978 CCTTTATTTT
* * * *
10035988 AATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTAGCTCC
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGA-T-CTTGCTTC
*
10036032 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT----TGCTTC
** * *
10036078 GGTCTACTCCACTATAACCTCAGGGAGATAAGA-CTTGCATATTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTTGC---TTC
* * * *
10036122 AACCTGCCCCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTC
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCT-T-GCTTC
* * * *
10036166 GATCTACTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT----TGCTTC
** * *
10036212 GGTCTACTCCACTATAACCTCAGGGAGATAAGA-CTTGCATATTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTTGC---TTC
* * * * *
10036256 AACCTGCCCCACTGTAACTTCAGGGACATAAGGTTTGTGGCTTC
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCT-T-GCTTC
* * *
10036300 GATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT----TGCTTC
* *
10036346 GATCTACTCCACTGTAACCTCAGGGAGATAAGA-CTTGCATATTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTTGC---TTC
* * * *
10036390 AACCTGCCCCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTC
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCT-T-GCTTC
* * *
10036434 GATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT----TGCTTC
** *
10036480 GGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CTTGCATATTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTTGC---TTC
* * * * ** *
10036524 AACCTGCCCCACTGTAACTTCAGAGAGATAGGATCCTTTATTTT
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGAT-C-TTGCTTC
* * ** ** *
10036568 AATCCGCTCCACTATAACTTCAGGGAGATTGGATAGTGTCCTC
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCTTG-CTTC
* * *
10036611 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCGTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT-T-GCTTC
10036655 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT
10036691 GAAATATTCA
Statistics
Matches: 503, Mismatches: 107, Indels: 98
0.71 0.15 0.14
Matches are distributed among these distances:
41 8 0.02
42 3 0.01
43 32 0.06
44 297 0.59
45 16 0.03
46 136 0.27
47 11 0.02
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (41 bp):
AATCTGCTCCACTGTAACTCAGGGAGATAAGATCTTGCTTC
Found at i:10037946 original size:7 final size:7
Alignment explanation
Indices: 10037934--10037973 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
10037924 TTAGCCTCTC
10037934 CATTTTT
1 CATTTTT
10037941 CA-TTTT
1 CATTTTT
10037947 CATTTTT
1 CATTTTT
10037954 CA-TTTT
1 CATTTTT
*
10037960 AATTTTT
1 CATTTTT
10037967 CATTTTT
1 CATTTTT
10037974 TTTGACTCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 11 0.38
7 18 0.62
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:10037952 original size:13 final size:13
Alignment explanation
Indices: 10037934--10037972 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
10037924 TTAGCCTCTC
10037934 CATTTTTCATTTT
1 CATTTTTCATTTT
10037947 CATTTTTCATTTT
1 CATTTTTCATTTT
*
10037960 AATTTTTCATTTT
1 CATTTTTCATTTT
10037973 TTTTGACTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.18, C:0.13, G:0.00, T:0.69
Consensus pattern (13 bp):
CATTTTTCATTTT
Found at i:10041267 original size:14 final size:15
Alignment explanation
Indices: 10041240--10041273 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
10041230 CGAACCAAAT
*
10041240 AAAACAAAACTAAAA
1 AAAAGAAAACTAAAA
10041255 AAAAGAAAA-TAAAA
1 AAAAGAAAACTAAAA
10041269 AAAAG
1 AAAAG
10041274 GATAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (15 bp):
AAAAGAAAACTAAAA
Found at i:10046684 original size:18 final size:17
Alignment explanation
Indices: 10046661--10046694 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10046651 TAGTATCTGG
10046661 TATCTGATCATTCTATTT
1 TATCTGAT-ATTCTATTT
*
10046679 TATCTGGTATTCTATT
1 TATCTGATATTCTATT
10046695 ATATTTGACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.15, G:0.09, T:0.56
Consensus pattern (17 bp):
TATCTGATATTCTATTT
Found at i:10063098 original size:30 final size:30
Alignment explanation
Indices: 10063062--10063118 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
10063052 ACGGGATGGA
10063062 ACATGGGCGTATGGCCAGCCTGTTTGGCTC
1 ACATGGGCGTATGGCCAGCCTGTTTGGCTC
*
10063092 ACATGGGCGTGTGGCCAGCCTGTTTGG
1 ACATGGGCGTATGGCCAGCCTGTTTGG
10063119 AAATGCCTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.12, C:0.25, G:0.37, T:0.26
Consensus pattern (30 bp):
ACATGGGCGTATGGCCAGCCTGTTTGGCTC
Found at i:10066522 original size:20 final size:20
Alignment explanation
Indices: 10066480--10066524 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
10066470 AAAAGAAAAA
* *
10066480 GAGAAAGGGAAGGGAGAGGG
1 GAGAAAGGAAAGGGAGAGAG
10066500 GAGATAAGGAAAGGG-GAGAG
1 GAGA-AAGGAAAGGGAGAGAG
10066520 GAGAA
1 GAGAA
10066525 GGGATGGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 12 0.55
21 9 0.41
ACGTcount: A:0.44, C:0.00, G:0.53, T:0.02
Consensus pattern (20 bp):
GAGAAAGGAAAGGGAGAGAG
Found at i:10071442 original size:53 final size:53
Alignment explanation
Indices: 10071361--10071468 Score: 175
Period size: 53 Copynumber: 2.0 Consensus size: 53
10071351 CTCCTAAGTA
*
10071361 TAGAAACATGAATTTAAAAGATTGGGAGCAT-AAAGTTCACTAATTTACATAAT
1 TAGAAACATGAATTTAAAAGATTAGGAGCATCAAA-TTCACTAATTTACATAAT
10071414 TAGAAACATGAATTT-AAAGCATTAGGAGCATCAAATTCACTAATTTACATAAT
1 TAGAAACATGAATTTAAAAG-ATTAGGAGCATCAAATTCACTAATTTACATAAT
10071467 TA
1 TA
10071469 ATCATCCAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
52 4 0.08
53 45 0.87
54 3 0.06
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.31
Consensus pattern (53 bp):
TAGAAACATGAATTTAAAAGATTAGGAGCATCAAATTCACTAATTTACATAAT
Found at i:10072582 original size:148 final size:148
Alignment explanation
Indices: 10072308--10072595 Score: 407
Period size: 148 Copynumber: 1.9 Consensus size: 148
10072298 AATTAGGACT
* * *
10072308 AAACCGTAATGTTTATAAAATTTTAGGTTGACATCGCGAAGTTATAGGGTTCCTTGTCACGACAC
1 AAACCGTAATGTTTACAAAATTTTAGGTTGACATCACGAAGTTATAGGGTTCCTCGTCACGACAC
* * * * ** *
10072373 AATATAGTAACTAGGTCTCATCTCAACAACCTATGCTTGACATCGTGTCGTGGCATAGTGGCCCG
66 AACATACTAACTAGGTCTCATCTAAACAACCCATGCTTGACATCGCATCATGGCATAGTGGCCCG
10072438 ATCTCGTCGCGATATGAC
131 ATCTCGTCGCGATATGAC
* * **
10072456 AAACTGTAATGTTTACAAAATTTTAGGTTGACGTCACGAAGTTAT-GAGGTTCCTCGTCGTGACA
1 AAACCGTAATGTTTACAAAATTTTAGGTTGACATCACGAAGTTATAG-GGTTCCTCGTCACGACA
* *
10072520 CAACATACTAACTAGGTCTCATCTAAACAACCCATGCTTGACATCGCATCATGGCATGGTGGCCT
65 CAACATACTAACTAGGTCTCATCTAAACAACCCATGCTTGACATCGCATCATGGCATAGTGGCCC
*
10072585 GATCTTGTCGC
130 GATCTCGTCGC
10072596 AACGATCTAC
Statistics
Matches: 122, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
147 1 0.01
148 121 0.99
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (148 bp):
AAACCGTAATGTTTACAAAATTTTAGGTTGACATCACGAAGTTATAGGGTTCCTCGTCACGACAC
AACATACTAACTAGGTCTCATCTAAACAACCCATGCTTGACATCGCATCATGGCATAGTGGCCCG
ATCTCGTCGCGATATGAC
Found at i:10076818 original size:21 final size:21
Alignment explanation
Indices: 10076794--10076837 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
10076784 TTATATATGT
*
10076794 TTAATTAAGC-TTTAGTTAATA
1 TTAATTAA-CTTTTAATTAATA
10076815 TTAATTAACTTTTAATTAATA
1 TTAATTAACTTTTAATTAATA
10076836 TT
1 TT
10076838 TTCTTATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.52
Consensus pattern (21 bp):
TTAATTAACTTTTAATTAATA
Found at i:10082222 original size:27 final size:27
Alignment explanation
Indices: 10082184--10082237 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
10082174 TTACCATCAG
10082184 AAAGCCTGATATAAGTTTTGATGATTT
1 AAAGCCTGATATAAGTTTTGATGATTT
*
10082211 AAAGCCTTATATAAGTTTTGATGATTT
1 AAAGCCTGATATAAGTTTTGATGATTT
10082238 CTGGAATCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (27 bp):
AAAGCCTGATATAAGTTTTGATGATTT
Found at i:10088699 original size:14 final size:13
Alignment explanation
Indices: 10088680--10088725 Score: 56
Period size: 15 Copynumber: 3.3 Consensus size: 13
10088670 GTTTTGAGTA
10088680 TTTTTTTCTTTTAT
1 TTTTTTTCTTTT-T
*
10088694 TTTTTTAACTTTCTT
1 TTTTTT-TCTTT-TT
10088709 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
10088722 TTTT
1 TTTT
10088726 CTATTCTCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 6 0.21
14 10 0.36
15 11 0.39
16 1 0.04
ACGTcount: A:0.07, C:0.09, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTTCTTTTT
Found at i:10094061 original size:20 final size:21
Alignment explanation
Indices: 10094036--10094077 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
10094026 TCAATTGGTC
*
10094036 ATAATACTCTATATA-AACAA
1 ATAATAATCTATATATAACAA
10094056 ATAATAATCTATATATAACAA
1 ATAATAATCTATATATAACAA
10094077 A
1 A
10094078 GTAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAATAATCTATATATAACAA
Found at i:10094073 original size:22 final size:22
Alignment explanation
Indices: 10094036--10094077 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
10094026 TCAATTGGTC
*
10094036 ATAATACTCTATATAAACAAATA
1 ATAATACTATATAT-AACAAATA
10094059 ATAAT-CTATATATAACAAA
1 ATAATACTATATATAACAAA
10094078 GTAAAAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 7 0.39
23 5 0.28
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (22 bp):
ATAATACTATATATAACAAATA
Found at i:10094491 original size:16 final size:16
Alignment explanation
Indices: 10094470--10094501 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
10094460 TTTAACTGCC
10094470 ACGTTAATTGAACTAT
1 ACGTTAATTGAACTAT
10094486 ACGTTAATTGAACTAT
1 ACGTTAATTGAACTAT
10094502 GTACCGTGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (16 bp):
ACGTTAATTGAACTAT
Found at i:10094628 original size:31 final size:29
Alignment explanation
Indices: 10094593--10094682 Score: 94
Period size: 29 Copynumber: 3.0 Consensus size: 29
10094583 AATCTCAAAA
*
10094593 TTATACATGAACTTTGGTCTAATGTGCAATT
1 TTATACATGAACTTTGAT-T-ATGTGCAATT
*
10094624 TTATACAT-AGACTTTGATTTTGTGCAATT
1 TTATACATGA-ACTTTGATTATGTGCAATT
*
10094653 TTATACATGAAAATTTGATT-TGATGCAATT
1 TTATACATG-AACTTTGATTATG-TGCAATT
10094683 CTCACAAATT
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
29 19 0.37
30 17 0.33
31 16 0.31
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.44
Consensus pattern (29 bp):
TTATACATGAACTTTGATTATGTGCAATT
Found at i:10094861 original size:31 final size:30
Alignment explanation
Indices: 10094817--10094885 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 30
10094807 AATTGAATTA
* *
10094817 AAATTAAATTTTCATGTATA-CATTTGAACC
1 AAATCAAAATTTCATGTATATCA-TTGAACC
*
10094847 ACAATCAAAATTTCATGTGTATCATTGAACC
1 A-AATCAAAATTTCATGTATATCATTGAACC
10094878 AAATCAAA
1 AAATCAAA
10094886 GTTCGTGTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.24
31 24 0.71
32 2 0.06
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.33
Consensus pattern (30 bp):
AAATCAAAATTTCATGTATATCATTGAACC
Found at i:10106077 original size:18 final size:18
Alignment explanation
Indices: 10106054--10106091 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
10106044 AAACAAGTTC
*
10106054 ATATAAA-AATCAAAATAT
1 ATATAAATAAT-AAAACAT
10106072 ATATAAATAATAAAACAT
1 ATATAAATAATAAAACAT
10106090 AT
1 AT
10106092 GATTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (18 bp):
ATATAAATAATAAAACAT
Found at i:10109284 original size:33 final size:33
Alignment explanation
Indices: 10109242--10109311 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
10109232 AGCCTAAGGT
10109242 ATGAGCCGTGTTATTCGCTTATCTCTTAACATG
1 ATGAGCCGTGTTATTCGCTTATCTCTTAACATG
*
10109275 ATGAGCCGTGTTATTCGCTTCTCTCTTAACATG
1 ATGAGCCGTGTTATTCGCTTATCTCTTAACATG
10109308 ATGA
1 ATGA
10109312 AAAGTAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (33 bp):
ATGAGCCGTGTTATTCGCTTATCTCTTAACATG
Found at i:10109504 original size:18 final size:18
Alignment explanation
Indices: 10109479--10109544 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
10109469 CTAAAAAAGG
10109479 TTTT-TTTTTAAAAAATA
1 TTTTATTTTTAAAAAATA
* **
10109496 TTTTATTTTTTAATTATA
1 TTTTATTTTTAAAAAATA
* * *
10109514 ATTTATTTTATAATTAATTA
1 TTTTATTTT-TAA-AAAATA
10109534 TTTTATTTTTA
1 TTTTATTTTTA
10109545 GGAAGTCTAA
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
17 4 0.11
18 18 0.50
19 4 0.11
20 10 0.28
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTATTTTTAAAAAATA
Found at i:10110311 original size:11 final size:10
Alignment explanation
Indices: 10110293--10110327 Score: 54
Period size: 11 Copynumber: 3.5 Consensus size: 10
10110283 CAAATAATTT
10110293 AAAAATTATA
1 AAAAATTATA
10110303 AAAATATTATA
1 AAAA-ATTATA
10110314 AAAAATT-TA
1 AAAAATTATA
10110323 AAAAA
1 AAAAA
10110328 ACTTAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 7 0.29
10 7 0.29
11 10 0.42
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAAATTATA
Found at i:10116694 original size:16 final size:16
Alignment explanation
Indices: 10116673--10116709 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
10116663 TACATTTGTA
*
10116673 TTTTTTTTATTTCAAG
1 TTTTTTCTATTTCAAG
*
10116689 TTTTTTCTATTTCATG
1 TTTTTTCTATTTCAAG
10116705 TTTTT
1 TTTTT
10116710 AATTAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.08, G:0.05, T:0.73
Consensus pattern (16 bp):
TTTTTTCTATTTCAAG
Found at i:10121303 original size:21 final size:21
Alignment explanation
Indices: 10121277--10121316 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
10121267 ACCTTTTCTA
10121277 AAGTTAAAA-GACAAAACTATT
1 AAGTTAAAAGGA-AAAACTATT
10121298 AAGTTAAAAGGAAAAACTA
1 AAGTTAAAAGGAAAAACTA
10121317 CGTTGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.60, C:0.07, G:0.12, T:0.20
Consensus pattern (21 bp):
AAGTTAAAAGGAAAAACTATT
Found at i:10122036 original size:22 final size:22
Alignment explanation
Indices: 10122008--10122058 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
10121998 CTCTCTAATC
10122008 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
10122030 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
10122052 CTCTCAA
1 CTCTCAA
10122059 ACCCATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.39
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATT
Found at i:10122086 original size:51 final size:51
Alignment explanation
Indices: 10122025--10122142 Score: 202
Period size: 51 Copynumber: 2.3 Consensus size: 51
10122015 TTTCCTTCCA
10122025 AAATT-CTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTC
1 AAATTCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTC
*
10122075 AAATTCCTCTCAATTTCCTTCCAAAATTCTCTCAAATCCATATTTAATTTC
1 AAATTCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTC
* *
10122126 AATTTCCCCTCAATTTC
1 AAATTCCTCTCAATTTC
10122143 ATTTTTTAAA
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
50 5 0.08
51 59 0.92
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.41
Consensus pattern (51 bp):
AAATTCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTC
Found at i:10122200 original size:31 final size:32
Alignment explanation
Indices: 10122144--10122209 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
10122134 CTCAATTTCA
*
10122144 TTTTTTAAAATAATTTTAATTTTTTTTTATAT
1 TTTTTTAAAATAATTTTAATATTTTTTTATAT
10122176 TTTTTTAAAATAATTTTAA-ATTTTTTTATAT
1 TTTTTTAAAATAATTTTAATATTTTTTTATAT
10122207 TTT
1 TTT
10122210 CATCAATGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 14 0.42
32 19 0.58
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (32 bp):
TTTTTTAAAATAATTTTAATATTTTTTTATAT
Found at i:10123292 original size:7 final size:7
Alignment explanation
Indices: 10123280--10123304 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10123270 AGTCGATTGA
10123280 TATTTAG
1 TATTTAG
10123287 TATTTAG
1 TATTTAG
10123294 TATTTAG
1 TATTTAG
10123301 TATT
1 TATT
10123305 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:10123981 original size:18 final size:18
Alignment explanation
Indices: 10123955--10123989 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10123945 AGGTGTGTTT
* *
10123955 CCTAGCCCTTATATGTAC
1 CCTAACCCTTACATGTAC
10123973 CCTAACCCTTACATGTA
1 CCTAACCCTTACATGTA
10123990 TCCTTTTCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.34, G:0.09, T:0.31
Consensus pattern (18 bp):
CCTAACCCTTACATGTAC
Found at i:10124420 original size:25 final size:25
Alignment explanation
Indices: 10124392--10124461 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
10124382 ATTTAATTTT
*
10124392 TTTATCTGATGTAATAAAATAGAAG
1 TTTATTTGATGTAATAAAATAGAAG
* *
10124417 TTTATTTAATATAATAAAATAGAAG
1 TTTATTTGATGTAATAAAATAGAAG
10124442 TTCTATTTGATGTAATAAAA
1 TT-TATTTGATGTAATAAAA
10124462 ACCCTAATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 24 0.62
26 15 0.38
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.40
Consensus pattern (25 bp):
TTTATTTGATGTAATAAAATAGAAG
Found at i:10124480 original size:18 final size:18
Alignment explanation
Indices: 10124457--10124505 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
10124447 TTTGATGTAA
*
10124457 TAAAAACCCTAATTTAAT
1 TAAAAACCCTAACTTAAT
10124475 TAAAAACCCTAACTTAAT
1 TAAAAACCCTAACTTAAT
10124493 TAAAAACCCTAAC
1 TAAAAACCCTAAC
10124506 CCTAACCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (18 bp):
TAAAAACCCTAACTTAAT
Found at i:10124524 original size:29 final size:29
Alignment explanation
Indices: 10124482--10124627 Score: 211
Period size: 29 Copynumber: 4.8 Consensus size: 29
10124472 AATTAAAAAC
*
10124482 CCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
*
10124511 CCTAATTTAATTAAAAACCCTAACTCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
*
10124540 CCTAGTTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
10124569 CCCTAACTTAATTTAATTAAAAACCCTAACCCTAA
1 --C---C-TAATTTAATTAAAAACCCTAACCCTAA
10124604 CCTAATTTAATTAAAAACCCTAAC
1 CCTAATTTAATTAAAAACCCTAAC
10124628 TTAATTAAAA
Statistics
Matches: 106, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
29 76 0.72
30 1 0.01
31 1 0.01
33 1 0.01
34 1 0.01
35 26 0.25
ACGTcount: A:0.44, C:0.27, G:0.01, T:0.28
Consensus pattern (29 bp):
CCTAATTTAATTAAAAACCCTAACCCTAA
Found at i:10124564 original size:23 final size:23
Alignment explanation
Indices: 10124464--10124564 Score: 82
Period size: 29 Copynumber: 4.1 Consensus size: 23
10124454 TAATAAAAAC
10124464 CCTAATTTAATTAAAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAA
*
10124487 CTTAA-TTAA--AAACCCTAACCCTAA
1 CCTAATTTAATTAAA----AACCCTAA
10124511 CCTAATTTAATTAAAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAA
10124534 CTCTAACCTAGTTTAATTAAAAACCCTAA
1 C-CT-A---A-TTTAATTAAAAACCCTAA
10124563 CC
1 CC
10124565 CTAACCCTAA
Statistics
Matches: 63, Mismatches: 2, Indels: 21
0.73 0.02 0.24
Matches are distributed among these distances:
20 3 0.05
22 4 0.06
23 13 0.21
24 14 0.22
25 5 0.08
27 3 0.05
28 2 0.03
29 19 0.30
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.29
Consensus pattern (23 bp):
CCTAATTTAATTAAAAACCCTAA
Found at i:10124572 original size:64 final size:64
Alignment explanation
Indices: 10124497--10124627 Score: 235
Period size: 64 Copynumber: 2.0 Consensus size: 64
10124487 CTTAATTAAA
* *
10124497 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTCTAACCTAGTTTAATTAAAAACCCT
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
*
10124561 AACCCTAACCCTAACTTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
10124625 AAC
1 AAC
10124628 TTAATTAAAA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.44, C:0.28, G:0.01, T:0.27
Consensus pattern (64 bp):
AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
Found at i:10124631 original size:18 final size:18
Alignment explanation
Indices: 10124604--10124738 Score: 111
Period size: 18 Copynumber: 8.3 Consensus size: 18
10124594 CTAACCCTAA
*
10124604 CCTAATTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
10124622 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
**
10124640 CCTAAC---CCT---AA-
1 CCTAACTTAATTAAAAAC
*
10124651 CCTAATTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
10124669 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
**
10124687 CCTAAC---CCT---AA-
1 CCTAACTTAATTAAAAAC
10124698 CCTAACTTAATT-AAAAC
1 CCTAACTTAATTAAAAAC
10124715 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
10124733 CCTAAC
1 CCTAAC
10124739 CCTAACCTAA
Statistics
Matches: 92, Mismatches: 11, Indels: 28
0.70 0.08 0.21
Matches are distributed among these distances:
11 11 0.12
12 4 0.04
14 2 0.02
15 2 0.02
16 2 0.02
17 14 0.15
18 57 0.62
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.27
Consensus pattern (18 bp):
CCTAACTTAATTAAAAAC
Found at i:10124635 original size:47 final size:47
Alignment explanation
Indices: 10124581--10124772 Score: 350
Period size: 47 Copynumber: 4.1 Consensus size: 47
10124571 CTAACTTAAT
*
10124581 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAC
1 TTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAAC
*
10124628 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAC
1 TTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAAC
10124675 TTAATTAAAAACCCTAACCCTAACCTAACTTAATT-AAAACCCTAAC
1 TTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAAC
10124721 TTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACC
1 TTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAA-C
10124769 TTAA
1 TTAA
10124773 CGTAACTTAA
Statistics
Matches: 142, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
46 46 0.32
47 91 0.64
48 5 0.04
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (47 bp):
TTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAAC
Found at i:10124701 original size:29 final size:29
Alignment explanation
Indices: 10124669--10124806 Score: 102
Period size: 29 Copynumber: 5.2 Consensus size: 29
10124659 AATTAAAAAC
10124669 CCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
10124698 CCTAACTTAATT-AAAACCCTAA-CTTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* *****
10124725 -TTAA---AAACCCTAACCCTAA--C---
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
10124745 -CTAACTTAATTAAAAACCCTAACCTTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* *
10124773 CGTAACTTAATTGAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
10124802 CCTAA
1 CCTAA
10124807 TTTTACATAA
Statistics
Matches: 81, Mismatches: 18, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
20 3 0.04
23 12 0.15
24 8 0.10
26 3 0.04
27 4 0.05
28 10 0.12
29 41 0.51
ACGTcount: A:0.44, C:0.29, G:0.01, T:0.25
Consensus pattern (29 bp):
CCTAACTTAATTAAAAACCCTAACCCTAA
Found at i:10124714 original size:93 final size:95
Alignment explanation
Indices: 10124581--10124772 Score: 352
Period size: 93 Copynumber: 2.0 Consensus size: 95
10124571 CTAACTTAAT
*
10124581 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAAC
1 TTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAAC
*
10124646 CCTAACCTAATTTAATTAAAAACCCTAA-C
66 CCTAACCTAACTTAATTAAAAACCCTAACC
10124675 TTAATTAAAAACCCTAACCCTAACCTAACTTAATT-AAAACCCTAACTTAATTAAAAACCCTAAC
1 TTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAAC
10124739 CCTAACCTAACTTAATTAAAAACCCTAACC
66 CCTAACCTAACTTAATTAAAAACCCTAACC
10124769 TTAA
1 TTAA
10124773 CGTAACTTAA
Statistics
Matches: 95, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
93 56 0.59
94 39 0.41
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (95 bp):
TTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAAC
CCTAACCTAACTTAATTAAAAACCCTAACC
Found at i:10124888 original size:55 final size:55
Alignment explanation
Indices: 10124804--10124927 Score: 223
Period size: 55 Copynumber: 2.3 Consensus size: 55
10124794 AACCCTAACC
*
10124804 TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTGTT-GGACTTAA
1 TAATTTTACATAATTTGATAATTTTACTAACCATTAACAAAATT-TTAGGACTTAA
10124859 TAATTTTACATAATTTGATAATTTTACTAACCATTAACAAAATTTTAGGACTTAA
1 TAATTTTACATAATTTGATAATTTTACTAACCATTAACAAAATTTTAGGACTTAA
10124914 TAATTTTACATAAT
1 TAATTTTACATAAT
10124928 GTTAGATTTG
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
54 2 0.03
55 65 0.97
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (55 bp):
TAATTTTACATAATTTGATAATTTTACTAACCATTAACAAAATTTTAGGACTTAA
Found at i:10127690 original size:123 final size:123
Alignment explanation
Indices: 10127471--10127695 Score: 398
Period size: 123 Copynumber: 1.8 Consensus size: 123
10127461 CCCAAACTTG
*
10127471 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAACAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
10127536 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTACATGAC
* * *
10127594 CTACTGTAACAAAATCGCGTCTACGAGGGCGCGATTTCACAATTTTTTCTCAAATAGCATCTTGG
1 CTACTGTAACAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
10127659 TAGAAGCGATTTTATACTATTTGAC-CAGAAACGTCAA
66 TAGAAGCGATTTTATACTATTTG-CTCAGAAACGTCAA
10127696 CTCGAAATAA
Statistics
Matches: 97, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
123 96 0.99
124 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (123 bp):
CTACTGTAACAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTACATGAC
Found at i:10130807 original size:23 final size:21
Alignment explanation
Indices: 10130781--10130825 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
10130771 AATTTTTGTT
10130781 TTCAAAAAAATGATTTCGACAGC
1 TTCAAAAAAAT-ATTTCGA-AGC
**
10130804 TTCAAATTAATATTTCGAAGC
1 TTCAAAAAAATATTTCGAAGC
10130825 T
1 T
10130826 ATACAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 7 0.35
23 9 0.45
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (21 bp):
TTCAAAAAAATATTTCGAAGC
Found at i:10130881 original size:30 final size:31
Alignment explanation
Indices: 10130840--10130899 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
10130830 AAATATGGCT
*
10130840 ATATAAAAGTA-TTAACAACCATATTATTATA
1 ATATAAAAGTATTTAACAACCACATT-TTATA
*
10130871 ATAT-AAAGTATTTCACAACCACATTTTAT
1 ATATAAAAGTATTTAACAACCACATTTTAT
10130900 GGTTGTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37
Consensus pattern (31 bp):
ATATAAAAGTATTTAACAACCACATTTTATA
Found at i:10132794 original size:13 final size:13
Alignment explanation
Indices: 10132763--10132800 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
10132753 GTTACAATAG
*
10132763 TAATATT-TTAAT
1 TAATATTATTTAT
10132775 TAATATTATTTAT
1 TAATATTATTTAT
*
10132788 TATTATTATTTAT
1 TAATATTATTTAT
10132801 ACTATATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TAATATTATTTAT
Found at i:10146428 original size:45 final size:45
Alignment explanation
Indices: 10146379--10146466 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
10146369 ATATTTTGAA
* *
10146379 TATTTTGATATTATTTTATATAATAAAATAGAAATTTTTTTGAGT
1 TATTTTGATATTATTTGATATAATAAAATAGAAATTTATTTGAGT
* *
10146424 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGA
1 TATTTTGATATTATTTGATATAATAAAATAGAAATTTATTTGA
10146467 TGTAATAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (45 bp):
TATTTTGATATTATTTGATATAATAAAATAGAAATTTATTTGAGT
Found at i:10146462 original size:25 final size:25
Alignment explanation
Indices: 10146434--10146491 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
10146424 TATTTTGATA
*
10146434 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAAT
10146459 TTATTTGATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAAT
*
10146484 TTTTTTGA
1 TTATTTGA
10146492 GTTATTTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAAT
Found at i:10149310 original size:41 final size:41
Alignment explanation
Indices: 10149288--10149448 Score: 286
Period size: 41 Copynumber: 3.9 Consensus size: 41
10149278 AGTCTAATTT
*
10149288 AGTTCACTGGCACTTAGCCTGCTAGGCTTATAGCCTGATTC
1 AGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTC
* *
10149329 AGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCTTGATTT
1 AGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTC
*
10149370 AATTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTC
1 AGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTC
10149411 AGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGA
1 AGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGA
10149449 ATAATTTCAC
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 113 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.30
Consensus pattern (41 bp):
AGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTC
Found at i:10151586 original size:40 final size:39
Alignment explanation
Indices: 10151519--10151628 Score: 130
Period size: 40 Copynumber: 2.8 Consensus size: 39
10151509 GTGTTTGGAT
*
10151519 AAAAAATGCCGCTAAAAATAAGCATTAGCGGTGCTATTA
1 AAAAAACGCCGCTAAAAATAAGCATTAGCGGTGCTATTA
* * * *
10151558 AAAAAACGCCGCTAAAGATCAAGTATTAGCGGTGCTTTTT
1 AAAAAACGCCGCTAAAAAT-AAGCATTAGCGGTGCTATTA
** * *
10151598 GGAAAACGCCGTTAAAAATGAGCATTAGCGG
1 AAAAAACGCCGCTAAAAATAAGCATTAGCGG
10151629 CGTTTTTCAA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 27 0.46
40 32 0.54
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (39 bp):
AAAAAACGCCGCTAAAAATAAGCATTAGCGGTGCTATTA
Found at i:10151902 original size:21 final size:22
Alignment explanation
Indices: 10151878--10151922 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
10151868 GCCATTTTAT
*
10151878 CCCCAAATTTCC-CCCCTGAAA
1 CCCCAAATTTCCTCCCCTAAAA
*
10151899 CCCCTAATTTCCTCCCCTAAAA
1 CCCCAAATTTCCTCCCCTAAAA
10151921 CC
1 CC
10151923 TTTAACTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.27, C:0.49, G:0.02, T:0.22
Consensus pattern (22 bp):
CCCCAAATTTCCTCCCCTAAAA
Found at i:10154441 original size:17 final size:18
Alignment explanation
Indices: 10154419--10154452 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10154409 ATGAGTAAAG
10154419 AAAAAC-TTTTTTATTTA
1 AAAAACTTTTTTTATTTA
10154436 AAAAACTTTTTTTATTT
1 AAAAACTTTTTTTATTT
10154453 TATAGGTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
AAAAACTTTTTTTATTTA
Found at i:10155890 original size:43 final size:42
Alignment explanation
Indices: 10155820--10156046 Score: 233
Period size: 43 Copynumber: 5.3 Consensus size: 42
10155810 AAGTCATGTT
* * * * *
10155820 TTTAGTGGCATTTGTGAAAAAACGCCGCTAAAGGTCATGAGT-
1 TTTAGTGGCGTTTGTGGAGAAGCGCCGCTAAAGGTCACGA-TC
** * *
10155862 TTTAGTGTTGTTTGTGGTAGAAGCGCCGCTAAAGGCCAAGATC
1 TTTAGTGGCGTTTGTGG-AGAAGCGCCGCTAAAGGTCACGATC
* *
10155905 TTTAGCGGCGTTTGTTGGAGAAGCGCCGCTAAAGGTCACGAGC
1 TTTAGTGGCGTTTG-TGGAGAAGCGCCGCTAAAGGTCACGATC
** * *
10155948 TTTAGCAGCGTTTGTGGGGGAAGCGCCACTAAAGGTCACGATC
1 TTTAGTGGCGTTTGT-GGAGAAGCGCCGCTAAAGGTCACGATC
*
10155991 TTTAGTGGCGATTGTGTGG-GAAGTGCCGCTAAAGGTCACGATC
1 TTTAGTGGCG-TT-TGTGGAGAAGCGCCGCTAAAGGTCACGATC
*
10156034 TTTAGCGGCGTTT
1 TTTAGTGGCGTTT
10156047 TTCCAAATAA
Statistics
Matches: 156, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.01
42 17 0.11
43 128 0.82
44 7 0.04
45 3 0.02
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.28
Consensus pattern (42 bp):
TTTAGTGGCGTTTGTGGAGAAGCGCCGCTAAAGGTCACGATC
Found at i:10156141 original size:22 final size:22
Alignment explanation
Indices: 10156116--10156157 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
10156106 TTGTTAAAGC
10156116 GCCGTTAAAAGCCTAAAAAAAT
1 GCCGTTAAAAGCCTAAAAAAAT
10156138 GCCGTTAAAAGCCTAAAAAA
1 GCCGTTAAAAGCCTAAAAAA
10156158 CGCCGCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.19, G:0.14, T:0.17
Consensus pattern (22 bp):
GCCGTTAAAAGCCTAAAAAAAT
Done.