Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 38 of 230
Found at i:10156157 original size:21 final size:22
Alignment explanation
Indices: 10156115--10156169 Score: 85
Period size: 21 Copynumber: 2.5 Consensus size: 22
10156105 CTTGTTAAAG
10156115 CGCCGTTAAAAGCCTAAAAAAA
1 CGCCGTTAAAAGCCTAAAAAAA
*
10156137 TGCCGTTAAAAGCCT-AAAAAA
1 CGCCGTTAAAAGCCTAAAAAAA
*
10156158 CGCCGCTAAAAG
1 CGCCGTTAAAAG
10156170 TCTTTTTTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 16 0.53
22 14 0.47
ACGTcount: A:0.45, C:0.24, G:0.16, T:0.15
Consensus pattern (22 bp):
CGCCGTTAAAAGCCTAAAAAAA
Found at i:10163436 original size:39 final size:39
Alignment explanation
Indices: 10163339--10163436 Score: 117
Period size: 39 Copynumber: 2.5 Consensus size: 39
10163329 GGCGTTTGGA
* *
10163339 ACAAAAGCGCCACAAAAAATCGAGCATTAGCGGCGATTT
1 ACAAAAGCGCCACAAAAAATAGAGAATTAGCGGCGATTT
* * *
10163378 CCAAGAAGCGCCGCTAAAAATAG-GAATTAGCGGCGATTT
1 ACAA-AAGCGCCACAAAAAATAGAGAATTAGCGGCGATTT
*
10163417 ATATAAAGCGCCACAAAAAA
1 ACA-AAAGCGCCACAAAAAA
10163437 CCTAAGACCA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
39 32 0.67
40 16 0.33
ACGTcount: A:0.43, C:0.21, G:0.20, T:0.15
Consensus pattern (39 bp):
ACAAAAGCGCCACAAAAAATAGAGAATTAGCGGCGATTT
Found at i:10163610 original size:41 final size:41
Alignment explanation
Indices: 10163565--10163781 Score: 167
Period size: 41 Copynumber: 5.3 Consensus size: 41
10163555 TTTTTATATG
* * *
10163565 AGCGCCGTTAAAT-CTCTGGCCTTTAGCGACGTTTTTGTCCA
1 AGCGCCGCT-AATCCTCTGGCCTTTAGTGGCGTTTTTGTCCA
* * *
10163606 AGCGCCGCTAATGCTC-GGAGCTTTAGTGGCGTTTTTATCTC-
1 AGCGCCGCTAATCCTCTGG-CCTTTAGTGGCGTTTTTGTC-CA
* *
10163647 AGCGCCACTAATCCTCTGGCCTTTAGTGGCGTTTTTGTCTA
1 AGCGCCGCTAATCCTCTGGCCTTTAGTGGCGTTTTTGTCCA
* * * * **
10163688 AGCGCCGCTAATGCTC-GGATCTTTAGTGACGTTTTTATCTG
1 AGCGCCGCTAATCCTCTGG-CCTTTAGTGGCGTTTTTGTCCA
* * * *
10163729 AGCGCCACTAATTCTCCT-GCCTTTAGCGGCGTTTGTT-TCTA
1 AGCGCCGCTAATCCT-CTGGCCTTTAGTGGCGTTT-TTGTCCA
*
10163770 TGCGCCGCTAAT
1 AGCGCCGCTAAT
10163782 AGTAACAAAA
Statistics
Matches: 143, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
40 7 0.05
41 129 0.90
42 7 0.05
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.35
Consensus pattern (41 bp):
AGCGCCGCTAATCCTCTGGCCTTTAGTGGCGTTTTTGTCCA
Found at i:10163667 original size:82 final size:81
Alignment explanation
Indices: 10163530--10163781 Score: 330
Period size: 82 Copynumber: 3.1 Consensus size: 81
10163520 GTGGCATGCT
* * ** *
10163530 GCTAATGCTCCGATCTTTAGCT-GCGTTTTTATATGAGCGCCGTTAAATCTCTGGCCTTTAGCGA
1 GCTAATGCTCGGATCTTTAG-TGGCGTTTTTATCTGAGCGCCACT-AATCTCTGGCCTTTAGCGG
*
10163594 CGTTTTTGTCCAAGCGCC
64 CGTTTTTGTCTAAGCGCC
* * *
10163612 GCTAATGCTCGGAGCTTTAGTGGCGTTTTTATCTCAGCGCCACTAATCCTCTGGCCTTTAGTGGC
1 GCTAATGCTCGGATCTTTAGTGGCGTTTTTATCTGAGCGCCACTAAT-CTCTGGCCTTTAGCGGC
10163677 GTTTTTGTCTAAGCGCC
65 GTTTTTGTCTAAGCGCC
*
10163694 GCTAATGCTCGGATCTTTAGTGACGTTTTTATCTGAGCGCCACTAATTCTCCT-GCCTTTAGCGG
1 GCTAATGCTCGGATCTTTAGTGGCGTTTTTATCTGAGCGCCACTAA-TCT-CTGGCCTTTAGCGG
*
10163758 CGTTTGTT-TCTATGCGCC
64 CGTTT-TTGTCTAAGCGCC
10163776 GCTAAT
1 GCTAAT
10163782 AGTAACAAAA
Statistics
Matches: 151, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
81 4 0.03
82 142 0.94
83 5 0.03
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (81 bp):
GCTAATGCTCGGATCTTTAGTGGCGTTTTTATCTGAGCGCCACTAATCTCTGGCCTTTAGCGGCG
TTTTTGTCTAAGCGCC
Found at i:10164287 original size:15 final size:15
Alignment explanation
Indices: 10164252--10164290 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
10164242 ATTTAAGGTT
10164252 AATTTAGGGGTTAGA
1 AATTTAGGGGTTAGA
** *
10164267 GGTTTAGGGGTTTGA
1 AATTTAGGGGTTAGA
10164282 AATTTAGGG
1 AATTTAGGG
10164291 TTTCAACGGT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.36
Consensus pattern (15 bp):
AATTTAGGGGTTAGA
Found at i:10166207 original size:31 final size:31
Alignment explanation
Indices: 10166149--10166207 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
10166139 AAATAAGTAA
**
10166149 GTAAGTAATTATTTATTTGTTAAATAAATTG
1 GTAAGTAATTATTTAAATGTTAAATAAATTG
*
10166180 GTAATTAATTATTTAAATG-TAAGATAAA
1 GTAAGTAATTATTTAAATGTTAA-ATAAA
10166208 AAAAATGAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 3 0.12
31 21 0.88
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (31 bp):
GTAAGTAATTATTTAAATGTTAAATAAATTG
Found at i:10167088 original size:11 final size:11
Alignment explanation
Indices: 10167072--10167098 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10167062 TTTGTTTAAT
10167072 TTACTTTCATA
1 TTACTTTCATA
10167083 TTACTTTCATA
1 TTACTTTCATA
10167094 TTACT
1 TTACT
10167099 GGTTGAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.00, T:0.56
Consensus pattern (11 bp):
TTACTTTCATA
Found at i:10169176 original size:16 final size:16
Alignment explanation
Indices: 10169115--10169560 Score: 151
Period size: 16 Copynumber: 26.9 Consensus size: 16
10169105 ACACATAGCC
* *
10169115 TACATGACTTACTTAA
1 TACATAACTTACATAA
* *
10169131 TACACAACTTAAATAA
1 TACATAACTTACATAA
*
10169147 TTTAAATAACTTACATAA
1 --TACATAACTTACATAA
10169165 TACATAACTTACAT--
1 TACATAACTTACATAA
10169179 T-CATAACTTACATAA
1 TACATAACTTACATAA
10169194 -ACTTATATGTTACCTTACATAA
1 TAC--ATA----A-CTTACATAA
10169216 TACATAACTT--AT-A
1 TACATAACTTACATAA
* *** *
10169229 TAAATTTTTTATATAAA
1 TACATAACTTACAT-AA
10169246 CTTACATAA--TACATAGCA
1 --TACATAACTTACATA--A
10169264 TACATAACTTACATAA
1 TACATAACTTACATAA
*
10169280 TACAAAACTTACATAA
1 TACATAACTTACATAA
* * * *
10169296 CTTAAATATCTTAAACAA
1 --TACATAACTTACATAA
*
10169314 CTTACATAACCTACATAA
1 --TACATAACTTACATAA
10169332 TACATAACTTACATAA
1 TACATAACTTACATAA
10169348 CTTACATAACTTACATAA
1 --TACATAACTTACATAA
*
10169366 TACATAA-TAAC-T--
1 TACATAACTTACATAA
10169378 TAC--AACTTACATAACA
1 TACATAACTTACAT-A-A
**
10169394 TACATTAA-TTTGATAA
1 TACA-TAACTTACATAA
*
10169410 CTTACATAAGTTACATAA
1 --TACATAACTTACATAA
*
10169428 TACATAACTTACA-ACT
1 TACATAACTTACATA-A
*
10169444 TACATAACATACATTAA
1 TACATAACTTACA-TAA
***
10169461 TTTGGTAACTTACATAA
1 -TACATAACTTACATAA
10169478 GTTACATAA--TACATAA
1 --TACATAACTTACATAA
10169494 CTTAC--AACTTACATAACA
1 --TACATAACTTACAT-A-A
* **
10169512 TACATTACTTTGATAA
1 TACATAACTTACATAA
*
10169528 CTTACATAAGTTACATAA
1 --TACATAACTTACATAA
*
10169546 TACACAACTTACATA
1 TACATAACTTACATA
10169561 GCTTACTTAA
Statistics
Matches: 323, Mismatches: 55, Indels: 104
0.67 0.11 0.22
Matches are distributed among these distances:
10 2 0.01
11 3 0.01
12 4 0.01
13 19 0.06
14 6 0.02
15 7 0.02
16 135 0.42
17 18 0.06
18 108 0.33
19 6 0.02
21 4 0.01
22 9 0.03
23 2 0.01
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.34
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:10169177 original size:9 final size:9
Alignment explanation
Indices: 10169131--10169617 Score: 268
Period size: 9 Copynumber: 56.3 Consensus size: 9
10169121 ACTTACTTAA
*
10169131 TACACAACT
1 TACATAACT
* *
10169140 TAAATAATT
1 TACATAACT
*
10169149 TAAATAACT
1 TACATAACT
10169158 TACATAA--
1 TACATAACT
10169165 TACATAACT
1 TACATAACT
10169174 TAC---A-T
1 TACATAACT
10169179 T-CATAACT
1 TACATAACT
10169187 TACATAAACT
1 TACAT-AACT
* *
10169197 TATATGTTACCT
1 TACA---TAACT
10169209 TACATAA--
1 TACATAACT
10169216 TACATAACT
1 TACATAACT
* *
10169225 TATATAAATTTTT
1 TACAT-AA---CT
*
10169238 TATATAAACT
1 TACAT-AACT
10169248 TACATAA--
1 TACATAACT
* *
10169255 TACATAGCA
1 TACATAACT
10169264 TACATAACT
1 TACATAACT
10169273 TACATAA--
1 TACATAACT
*
10169280 TACAAAACT
1 TACATAACT
10169289 TACATAACT
1 TACATAACT
* *
10169298 TAAATATCT
1 TACATAACT
* *
10169307 TAAACAACT
1 TACATAACT
*
10169316 TACATAACC
1 TACATAACT
10169325 TACATAA--
1 TACATAACT
10169332 TACATAACT
1 TACATAACT
10169341 TACATAACT
1 TACATAACT
10169350 TACATAACT
1 TACATAACT
*
10169359 TACATAATACA
1 TACAT-A-ACT
10169370 TA-ATAACT
1 TACATAACT
10169378 TAC--AACT
1 TACATAACT
*
10169385 TACATAACA
1 TACATAACT
10169394 TACATTAA-T
1 TACA-TAACT
**
10169403 TTGATAACT
1 TACATAACT
*
10169412 TACATAAGT
1 TACATAACT
10169421 TACATAA--
1 TACATAACT
10169428 TACATAACT
1 TACATAACT
10169437 TAC--AACT
1 TACATAACT
*
10169444 TACATAACA
1 TACATAACT
10169453 TACATTAA-T
1 TACA-TAACT
***
10169462 TTGGTAACT
1 TACATAACT
*
10169471 TACATAAGT
1 TACATAACT
10169480 TACATAA--
1 TACATAACT
10169487 TACATAACT
1 TACATAACT
10169496 TAC--AACT
1 TACATAACT
*
10169503 TACATAACA
1 TACATAACT
*
10169512 TACATTACT
1 TACATAACT
**
10169521 TTGATAACT
1 TACATAACT
*
10169530 TACATAAGT
1 TACATAACT
10169539 TACATAA--
1 TACATAACT
*
10169546 TACACAACT
1 TACATAACT
*
10169555 TACATAGCT
1 TACATAACT
*
10169564 TACTTAA--
1 TACATAACT
*
10169571 TACATGACT
1 TACATAACT
10169580 TACATAACT
1 TACATAACT
*
10169589 T--ATACACG
1 TACATA-ACT
10169597 TACATAACT
1 TACATAACT
*
10169606 TACATAATT
1 TACATAACT
10169615 TAC
1 TAC
10169618 TTAATACATA
Statistics
Matches: 368, Mismatches: 63, Indels: 94
0.70 0.12 0.18
Matches are distributed among these distances:
4 1 0.00
5 2 0.01
6 1 0.00
7 83 0.23
8 15 0.04
9 220 0.60
10 26 0.07
11 4 0.01
12 6 0.02
13 10 0.03
ACGTcount: A:0.45, C:0.18, G:0.02, T:0.34
Consensus pattern (9 bp):
TACATAACT
Found at i:10169185 original size:13 final size:15
Alignment explanation
Indices: 10169152--10169192 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 15
10169142 AATAATTTAA
10169152 ATAACTTACATAATAC
1 ATAACTTACAT-ATAC
10169168 ATAACTTACAT-T-C
1 ATAACTTACATATAC
10169181 ATAACTTACATA
1 ATAACTTACATA
10169193 AACTTATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 12 0.50
14 1 0.04
16 11 0.46
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (15 bp):
ATAACTTACATATAC
Found at i:10169272 original size:25 final size:24
Alignment explanation
Indices: 10169244--10169457 Score: 93
Period size: 25 Copynumber: 9.0 Consensus size: 24
10169234 TTTTTATATA
10169244 AACTTACATAATACATAGCATACAT
1 AACTTACATAATACATA-CATACAT
* *
10169269 AACTTACATAATACAAAACTTACAT
1 AACTTACATAATAC-ATACATACAT
* *
10169294 AACTTAAAT-AT-CTTA-A-AC--
1 AACTTACATAATACATACATACAT
10169312 AACTTACATAACCTACATA-ATACAT
1 AACTTACATAA--TACATACATACAT
*
10169337 AACTTACATAACTTACATAACTTACAT
1 AACTTACATAA--TACAT-ACATACAT
*
10169364 AA--TACATAAT--A-ACTTAC--
1 AACTTACATAATACATACATACAT
**
10169381 AACTTACATAACATACATTA-ATTTGAT
1 AACTTACAT-A-ATACA-TACA-TACAT
10169408 AACTTACATAAGTTACATA-ATACAT
1 AACTTACATAA--TACATACATACAT
*
10169433 AACTTACA-ACTTACATAACATACAT
1 AACTTACATA-ATACAT-ACATACAT
10169458 TAATTTGGTA
Statistics
Matches: 147, Mismatches: 16, Indels: 52
0.68 0.07 0.24
Matches are distributed among these distances:
17 2 0.01
18 8 0.05
19 12 0.08
20 3 0.02
21 4 0.03
22 5 0.03
23 10 0.07
24 4 0.03
25 72 0.49
26 7 0.05
27 20 0.14
ACGTcount: A:0.48, C:0.20, G:0.01, T:0.31
Consensus pattern (24 bp):
AACTTACATAATACATACATACAT
Found at i:10169336 original size:43 final size:41
Alignment explanation
Indices: 10169269--10169374 Score: 131
Period size: 43 Copynumber: 2.5 Consensus size: 41
10169259 TAGCATACAT
* *
10169269 AACTTACATAATACAAAACTTACATAACTTAAATATCTTAAAC
1 AACTTACATAATACATAA--TACATAACTTAAATAACTTAAAC
* * *
10169312 AACTTACATAACCTACATAATACATAACTTACATAACTTACAT
1 AACTTACATAA--TACATAATACATAACTTAAATAACTTAAAC
10169355 AACTTACATAATACATAATA
1 AACTTACATAATACATAATA
10169375 ACTTACAACT
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
41 9 0.16
43 41 0.73
45 6 0.11
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (41 bp):
AACTTACATAATACATAATACATAACTTAAATAACTTAAAC
Found at i:10169460 original size:59 final size:59
Alignment explanation
Indices: 10169344--10169558 Score: 367
Period size: 59 Copynumber: 3.6 Consensus size: 59
10169334 CATAACTTAC
*
10169344 ATAACTTACATAACTTACATAATACATAATAACTTACAACTTACATAACATACATTAATTTG
1 ATAACTTACATAAGTTACATAATAC---ATAACTTACAACTTACATAACATACATTAATTTG
10169406 ATAACTTACATAAGTTACATAATACATAACTTACAACTTACATAACATACATTAATTTG
1 ATAACTTACATAAGTTACATAATACATAACTTACAACTTACATAACATACATTAATTTG
* *
10169465 GTAACTTACATAAGTTACATAATACATAACTTACAACTTACATAACATACATTACTTTG
1 ATAACTTACATAAGTTACATAATACATAACTTACAACTTACATAACATACATTAATTTG
*
10169524 ATAACTTACATAAGTTACATAATACACAACTTACA
1 ATAACTTACATAAGTTACATAATACATAACTTACA
10169559 TAGCTTACTT
Statistics
Matches: 148, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
59 124 0.84
62 24 0.16
ACGTcount: A:0.46, C:0.18, G:0.03, T:0.33
Consensus pattern (59 bp):
ATAACTTACATAAGTTACATAATACATAACTTACAACTTACATAACATACATTAATTTG
Found at i:10169566 original size:25 final size:25
Alignment explanation
Indices: 10169526--10169590 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
10169516 TTACTTTGAT
10169526 AACTTACATAAG-TTACATAATACAC
1 AACTTACAT-AGCTTACATAATACAC
* *
10169551 AACTTACATAGCTTACTTAATACAT
1 AACTTACATAGCTTACATAATACAC
* *
10169576 GACTTACATAACTTA
1 AACTTACATAGCTTA
10169591 TACACGTACA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 2 0.06
25 33 0.94
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.32
Consensus pattern (25 bp):
AACTTACATAGCTTACATAATACAC
Found at i:10169574 original size:118 final size:119
Alignment explanation
Indices: 10169310--10169590 Score: 383
Period size: 118 Copynumber: 2.4 Consensus size: 119
10169300 AATATCTTAA
* *
10169310 ACAACTTACATAACCTACATAATACA-TAACTTACATAACTTACATAACTTACATAATACATAAT
1 ACAACTTACAT-ACTTACTTAATACATTAACTTACATAACTTACATAACTTACATAATAC--AAT
10169374 AACTTACAACTTACATAACATACATTAATTTGATAACTTACATAAGTTACATAATAC
63 AACTTACAACTTACATAACATACATTAATTTGATAACTTACATAAGTTACATAATAC
* * *** *
10169431 ATAACTTACA-ACTTACATAACATACATTAA-TTTGGTAACTTACATAAGTTACATAATAC-ATA
1 ACAACTTACATACTTAC-TTA-ATACATTAACTTACATAACTTACATAACTTACATAATACAATA
*
10169493 ACTTACAACTTACATAACATACATTACTTTGATAACTTACATAAGTTACATAATAC
64 ACTTACAACTTACATAACATACATTAATTTGATAACTTACATAAGTTACATAATAC
*
10169549 ACAACTTACATAGCTTACTTAATACA-TGACTTACATAACTTA
1 ACAACTTACATA-CTTACTTAATACATTAACTTACATAACTTA
10169591 TACACGTACA
Statistics
Matches: 139, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
117 2 0.01
118 81 0.58
119 8 0.06
120 6 0.04
121 39 0.28
122 3 0.02
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.33
Consensus pattern (119 bp):
ACAACTTACATACTTACTTAATACATTAACTTACATAACTTACATAACTTACATAATACAATAAC
TTACAACTTACATAACATACATTAATTTGATAACTTACATAAGTTACATAATAC
Found at i:10175175 original size:21 final size:21
Alignment explanation
Indices: 10175151--10175201 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
10175141 CTACAACTTA
* *
10175151 AAGCAGATGCGGCAACGAGAG
1 AAGCAGAGGCAGCAACGAGAG
*
10175172 AAGCAGAGGCAGCAGCGAGAG
1 AAGCAGAGGCAGCAACGAGAG
*
10175193 AAGCTGAGG
1 AAGCAGAGG
10175202 TTCAACGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.18, G:0.41, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCAGCAACGAGAG
Found at i:10175254 original size:21 final size:21
Alignment explanation
Indices: 10175230--10175288 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
10175220 AACTCCAGCA
*
10175230 GCAGCGAGAGAAGCAGAGGCT
1 GCAGCGAGGGAAGCAGAGGCT
* ** *
10175251 GCAGTGAGGGAATTAAAGGCT
1 GCAGCGAGGGAAGCAGAGGCT
*
10175272 GCAACGAGGGAAGCAGA
1 GCAGCGAGGGAAGCAGA
10175289 ACAGCGTAAA
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.36, C:0.15, G:0.41, T:0.08
Consensus pattern (21 bp):
GCAGCGAGGGAAGCAGAGGCT
Found at i:10175660 original size:43 final size:43
Alignment explanation
Indices: 10175595--10176107 Score: 636
Period size: 43 Copynumber: 11.9 Consensus size: 43
10175585 CAAAATTAGC
** * * *
10175595 GGCGTTTTTTGGGTAAGCGCCGCTAAAGAACACGGCCTATAGT
1 GGCGTTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * * *
10175638 GGCATTTTTCGTATAAGCGCCGCTAAAGACCTTGGTCTATAGT
1 GGCGTTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * *
10175681 GACGTTTTTTGGCTAAGCGCCGCTAAAGACCATGGTCTCTAGT
1 GGCGTTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
10175724 GGCGTTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTATCGT
1 GGCGTTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
10175767 GGC-TTTTTTGGCTAAGCGCTGCTAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * * *
10175809 GGCGTTTTTTGTCTAAACGCCGCTAAAGACAATGGCCTATAAT
1 GGCGTTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
10175852 GGCGTTTTTTTGTCCAAGCGCCGCTAAAGACCATGGTCTATAGT
1 GGCG-TTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * * * *
10175896 GGCGTTTTTTGTCCAATCGCCGCTAAAAAACACGGTCTATAGT
1 GGCGTTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
10175939 GGCATTTTTTGTCCAAGCGCCGCTAAAGACCATGGTCTATAGT
1 GGCGTTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * *
10175982 GGCGTTTTATGTAC-AAACGCCGCTAAAAGACCATGATCTATAGT
1 GGCGTTTTTTGT-CTAAGCGCCGCT-AAAGACCATGGTCTATAGT
* * * * * *
10176026 GGCGTTTTTTGTAT-AGCGGCGCGAAAGACTATGGCCTATAGC
1 GGCGTTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
10176068 GGCGTTTTTTGTGTAAGCGCCGCTAAAGACCATAGTCTAT
1 GGCGTTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTAT
10176108 TGCGGCGCTT
Statistics
Matches: 403, Mismatches: 61, Indels: 12
0.85 0.13 0.03
Matches are distributed among these distances:
42 67 0.17
43 268 0.67
44 68 0.17
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.30
Consensus pattern (43 bp):
GGCGTTTTTTGTCTAAGCGCCGCTAAAGACCATGGTCTATAGT
Found at i:10185839 original size:27 final size:26
Alignment explanation
Indices: 10185805--10185916 Score: 93
Period size: 26 Copynumber: 4.1 Consensus size: 26
10185795 AAAATTTTGA
*
10185805 AAATTTAAAAAAATATAAAAATTATT
1 AAATATAAAAAAATATAAAAATTATT
* *
10185831 AAATCTTAAAAAAATATGAAAATTGATAT
1 AAAT-ATAAAAAAATATAAAAATT-AT-T
*
10185860 AGAATCATAAAAAAA-ATTATAAAATTATA
1 A-AAT-ATAAAAAAATA-TA-AAAATTATT
*
10185889 AAATAT-AAAAAATCTAATAAATTATT
1 AAATATAAAAAAATATAA-AAATTATT
10185915 AA
1 AA
10185917 TAAAACATAT
Statistics
Matches: 72, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
25 1 0.01
26 21 0.29
27 20 0.28
28 5 0.07
29 4 0.06
30 15 0.21
31 6 0.08
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (26 bp):
AAATATAAAAAAATATAAAAATTATT
Found at i:10185873 original size:30 final size:27
Alignment explanation
Indices: 10185810--10185916 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
10185800 TTTGAAAATT
*
10185810 TAAAAAAATATAAAAATTATTAAATCT
1 TAAAAAAATATAAAAATTATTAAATCA
*
10185837 TAAAAAAATATGAAAATTGATATAGAATCA
1 TAAAAAAATATAAAAATT-AT-TA-AATCA
*
10185867 TAAAAAAA-ATTATAAAATTATAAAAT-A
1 TAAAAAAATA-TA-AAAATTATTAAATCA
*
10185894 T-AAAAAATCTAATAAATTATTAA
1 TAAAAAAATATAA-AAATTATTAA
10185917 TAAAACATAT
Statistics
Matches: 67, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
25 1 0.01
26 17 0.25
27 19 0.28
28 5 0.07
29 4 0.06
30 15 0.22
31 6 0.09
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (27 bp):
TAAAAAAATATAAAAATTATTAAATCA
Found at i:10185940 original size:21 final size:23
Alignment explanation
Indices: 10185907--10185953 Score: 71
Period size: 21 Copynumber: 2.1 Consensus size: 23
10185897 AAAATCTAAT
10185907 AAATTATTAATAAAACATATTTA
1 AAATTATTAATAAAACATATTTA
*
10185930 AAATT-TT-ATAAAACCTATTTA
1 AAATTATTAATAAAACATATTTA
10185951 AAA
1 AAA
10185954 ACTATACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.70
22 2 0.09
23 5 0.22
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.38
Consensus pattern (23 bp):
AAATTATTAATAAAACATATTTA
Found at i:10186019 original size:10 final size:9
Alignment explanation
Indices: 10185766--10186028 Score: 74
Period size: 9 Copynumber: 27.6 Consensus size: 9
10185756 TTTTTTCATA
10185766 AAAATATTA-
1 AAAA-ATTAT
10185775 AAAAATTAT
1 AAAAATTAT
* *
10185784 AAGGAATTAG
1 AA-AAATTAT
*
10185794 AAAAATTTT
1 AAAAATTAT
*
10185803 GAAAATT-T
1 AAAAATTAT
*
10185811 AAAAAAATAT
1 -AAAAATTAT
10185821 AAAAATTATT
1 AAAAATTA-T
**
10185831 AAATCTTA-
1 AAAAATTAT
*
10185839 AAAAAATAT
1 AAAAATTAT
*
10185848 GAAAATTGAT
1 AAAAATT-AT
* *
10185858 ATAGAATCATAAA
1 A-A-AA--ATTAT
10185871 AAAAATTAT
1 AAAAATTAT
10185880 -AAAATTAT
1 AAAAATTAT
10185888 -AAAA-TAT
1 AAAAATTAT
10185895 AAAAAATCTAAT
1 -AAAAAT-T-AT
*
10185907 AAATTATTAAT
1 AAA-AATT-AT
*
10185918 AAAACATATTT
1 AAAA-AT-TAT
*
10185929 AAAATTTTAT
1 AAAA-ATTAT
10185939 AAAACCTATT-T
1 AAAA---ATTAT
*
10185950 AAAAACTAT
1 AAAAATTAT
* *
10185959 ACAAATCAT
1 AAAAATTAT
10185968 AAAAATTAT
1 AAAAATTAT
10185977 AAAAA-TAT
1 AAAAATTAT
* *
10185985 TAAAAGTAT
1 AAAAATTAT
*
10185994 GAAAATTGAT
1 AAAAATT-AT
*
10186004 ATAAATTTAT
1 A-AAAATTAT
10186014 AAAAATTATT
1 AAAAATTA-T
10186024 AAAAA
1 AAAAA
10186029 AACATAAAGA
Statistics
Matches: 188, Mismatches: 40, Indels: 51
0.67 0.14 0.18
Matches are distributed among these distances:
7 3 0.02
8 31 0.16
9 73 0.39
10 34 0.18
11 32 0.17
12 11 0.06
13 2 0.01
14 2 0.01
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:10187169 original size:23 final size:24
Alignment explanation
Indices: 10187142--10187189 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
10187132 TTTTTAATTA
* *
10187142 TTTTAAAGAACTCT-AATAAGTTT
1 TTTTAAAAAAATCTAAATAAGTTT
*
10187165 TTTTAAAAAAATTTAAATAAGTTT
1 TTTTAAAAAAATCTAAATAAGTTT
10187189 T
1 T
10187190 ACTAATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (24 bp):
TTTTAAAAAAATCTAAATAAGTTT
Found at i:10187304 original size:18 final size:19
Alignment explanation
Indices: 10187278--10187322 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
10187268 TTTTAATATT
*
10187278 TAATATTTA-ATATTTTTA
1 TAATTTTTAGATATTTTTA
*
10187296 TAATTTTTATGATTTTTTTA
1 TAATTTTTA-GATATTTTTA
10187316 TAATTTT
1 TAATTTT
10187323 AATGAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 8 0.35
20 15 0.65
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
TAATTTTTAGATATTTTTA
Found at i:10187315 original size:20 final size:20
Alignment explanation
Indices: 10187290--10187327 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10187280 ATATTTAATA
*
10187290 TTTTTATAATTTTTATGATT
1 TTTTTATAATTTTAATGATT
10187310 TTTTTATAATTTTAATGA
1 TTTTTATAATTTTAATGA
10187328 AAATATTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (20 bp):
TTTTTATAATTTTAATGATT
Found at i:10195512 original size:54 final size:54
Alignment explanation
Indices: 10195408--10195512 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
10195398 AAACAGGGGT
* * * * *
10195408 CACACGGTTGTGTCCCAGCCTGTGTCTCTACTCATGTAACTCACTGACTTGAGA
1 CACAAGGTCGTGTCCCAGCCCGTGTCTCTACCCATGTAACTCACTAACTTGAGA
* * * *
10195462 CACAAGGTCGTGTCCCAGCCCGTGTCTTTGCCCGTGTAACTCATTAACTTG
1 CACAAGGTCGTGTCCCAGCCCGTGTCTCTACCCATGTAACTCACTAACTTG
10195513 GGTCACACGG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.19, C:0.30, G:0.21, T:0.30
Consensus pattern (54 bp):
CACAAGGTCGTGTCCCAGCCCGTGTCTCTACCCATGTAACTCACTAACTTGAGA
Found at i:10199361 original size:14 final size:13
Alignment explanation
Indices: 10199344--10199452 Score: 54
Period size: 14 Copynumber: 8.5 Consensus size: 13
10199334 AAAATAAAAA
10199344 TTAAAAAAAGTATT
1 TTAAAAAAA-TATT
10199358 TT--AAAAATATT
1 TTAAAAAAATATT
**
10199369 TTAAAATTAAA-AAA
1 TTAAAA--AAATATT
10199383 TTAAAAAAAGTATT
1 TTAAAAAAA-TATT
10199397 TT-AAAAAA-A-T
1 TTAAAAAAATATT
10199407 TT-AAAAAAT-TT
1 TTAAAAAAATATT
* * *
10199418 TAAAATTAAAAAAAT
1 TTAAA--AAAATATT
10199433 TTAAAAAAAGTATT
1 TTAAAAAAA-TATT
10199447 TTAAAA
1 TTAAAA
10199453 TTTAAAAAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 26
0.67 0.09 0.24
Matches are distributed among these distances:
10 9 0.12
11 9 0.12
12 10 0.14
13 12 0.17
14 24 0.33
15 8 0.11
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (13 bp):
TTAAAAAAATATT
Found at i:10199368 original size:11 final size:10
Alignment explanation
Indices: 10199355--10199422 Score: 54
Period size: 10 Copynumber: 6.9 Consensus size: 10
10199345 TAAAAAAAGT
10199355 ATTTTAAAAA
1 ATTTTAAAAA
10199365 TATTTT--AAA
1 -ATTTTAAAAA
10199374 A--TTAAAAA
1 ATTTTAAAAA
**
10199382 ATTAAAAAAA
1 ATTTTAAAAA
10199392 GTATTTTAAAAA
1 --ATTTTAAAAA
*
10199404 AATTTAAAAA
1 ATTTTAAAAA
10199414 ATTTTAAAA
1 ATTTTAAAA
10199423 TTAAAAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
6 2 0.04
8 5 0.11
9 3 0.07
10 22 0.49
11 5 0.11
12 8 0.18
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (10 bp):
ATTTTAAAAA
Found at i:10199391 original size:39 final size:39
Alignment explanation
Indices: 10199332--10199470 Score: 160
Period size: 39 Copynumber: 3.6 Consensus size: 39
10199322 ATTTCAAAAA
10199332 TTAAAA-T-AAAAATTAAAAAAAGTATTTTAAAAATATT
1 TTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAATATT
*
10199369 TTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAAAATT
1 TTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAATATT
* ** **
10199408 TAAAAAATTTTAAAATTAAAAAAA-T-TTAAAAAAAGTATT
1 T-TAAAATTAAAAAATTAAAAAAAGTATTTTAAAAA-TATT
*
10199447 TTAAAATTTAAAAAATAAAAAAAA
1 TTAAAA-TTAAAAAATTAAAAAAA
10199471 ATAAAAATAT
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
37 6 0.07
38 12 0.14
39 49 0.57
40 19 0.22
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.32
Consensus pattern (39 bp):
TTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAATATT
Found at i:10199437 original size:50 final size:49
Alignment explanation
Indices: 10199357--10199452 Score: 167
Period size: 50 Copynumber: 1.9 Consensus size: 49
10199347 AAAAAAGTAT
10199357 TTTAAAAATATTTTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAAAA
1 TTTAAAAATATTTTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAAAA
10199406 TTTAAAAA-ATTTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAA
1 TTTAAAAATATTTTAAAATT-AAAAAA-TTAAAAAAAGTATTTTAAAA
10199453 TTTAAAAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
48 11 0.24
49 14 0.31
50 20 0.44
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (49 bp):
TTTAAAAATATTTTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAAAA
Found at i:10199453 original size:30 final size:28
Alignment explanation
Indices: 10199397--10199472 Score: 95
Period size: 30 Copynumber: 2.8 Consensus size: 28
10199387 AAAAAGTATT
10199397 TTAAAAAAATTT--AAAAAATTTTAAAA
1 TTAAAAAAATTTAAAAAAAATTTTAAAA
10199423 TTAAAAAAATTTAAAAAAAGTATTTTAAAA
1 TTAAAAAAATTTAAAAAAA--ATTTTAAAA
* *
10199453 TTTAAAAAA-TAAAAAAAAAT
1 TTAAAAAAATTTAAAAAAAAT
10199473 AAAAATATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
26 12 0.27
27 2 0.05
28 5 0.11
29 8 0.18
30 17 0.39
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (28 bp):
TTAAAAAAATTTAAAAAAAATTTTAAAA
Found at i:10199461 original size:48 final size:47
Alignment explanation
Indices: 10199357--10199461 Score: 151
Period size: 48 Copynumber: 2.2 Consensus size: 47
10199347 AAAAAAGTAT
*
10199357 TTTAAAAATATTTTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAAAA
1 TTTAAAAAAATTTTAAAATTAAAAAATTAAAAAAAGTATTTT--AAAAA
10199406 TTT-AAAAAATTTTAAAATTAAAAAAATTTAAAAAAAGTATTTT-AAAA
1 TTTAAAAAAATTTTAAAATT-AAAAAA-TTAAAAAAAGTATTTTAAAAA
10199453 TTTAAAAAA
1 TTTAAAAAA
10199462 TAAAAAAAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 7
0.87 0.02 0.12
Matches are distributed among these distances:
47 7 0.13
48 20 0.38
49 9 0.17
50 16 0.31
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (47 bp):
TTTAAAAAAATTTTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:10199476 original size:48 final size:48
Alignment explanation
Indices: 10199371--10199483 Score: 131
Period size: 50 Copynumber: 2.3 Consensus size: 48
10199361 AAAATATTTT
* ***
10199371 AAAATTAAAAAA-TTAAAAAAAGTATTTTAAAAAAATTTAAAAAATTTTA
1 AAAATAAAAAAATTTAAAAAAAGTATTTT--AAAAATTTAAAAAATAAAA
*
10199420 AAATTAAAAAAATTTAAAAAAAGTATTTT-AAAATTTAAAAAATAAAAA
1 AAAATAAAAAAATTTAAAAAAAGTATTTTAAAAATTTAAAAAAT-AAAA
*
10199468 AAAATAAAAATATTTA
1 AAAATAAAAAAATTTA
10199484 TTATTCGGGC
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
47 14 0.25
48 15 0.27
49 10 0.18
50 16 0.29
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (48 bp):
AAAATAAAAAAATTTAAAAAAAGTATTTTAAAAATTTAAAAAATAAAA
Found at i:10201286 original size:26 final size:27
Alignment explanation
Indices: 10201243--10201296 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
10201233 AAACTAAATT
*
10201243 ATAATTATTTTTAAATGTGTAATTATC
1 ATAATTATTTTTAAATGTATAATTATC
10201270 ATAATT-TTTTTAAATGTATAATTATC
1 ATAATTATTTTTAAATGTATAATTATC
10201296 A
1 A
10201297 CAACTTCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.52
Consensus pattern (27 bp):
ATAATTATTTTTAAATGTATAATTATC
Found at i:10203544 original size:3 final size:3
Alignment explanation
Indices: 10203536--10203576 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
10203526 AAGGGCTAGC
*
10203536 TTA TTA TTA TTA TTA GTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
10203577 TTCTTGAAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:10205306 original size:18 final size:17
Alignment explanation
Indices: 10205280--10205315 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
10205270 TTTGGTTATA
10205280 TTTAATTTTCGATATGTT
1 TTTAATTTT-GATATGTT
*
10205298 TTTATTTTTGATATGTT
1 TTTAATTTTGATATGTT
10205315 T
1 T
10205316 CATTTAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.67
Consensus pattern (17 bp):
TTTAATTTTGATATGTT
Found at i:10212429 original size:25 final size:25
Alignment explanation
Indices: 10212384--10212440 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
10212374 AGCTCTTTCT
* * **
10212384 AGCTGAATAATGGGAACCTCATGCG
1 AGCTGAATAACGGAAACCTCATAAG
*
10212409 AGCTGAATAACGGAAAGCTCATAAG
1 AGCTGAATAACGGAAACCTCATAAG
10212434 AGCTGAA
1 AGCTGAA
10212441 ATCGGTGACC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.18
Consensus pattern (25 bp):
AGCTGAATAACGGAAACCTCATAAG
Found at i:10219869 original size:25 final size:25
Alignment explanation
Indices: 10219840--10219898 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
10219830 TAAGCTCTTT
*
10219840 CGAGCTGAATAACGGGAACCTCATG
1 CGAGCTGAATAACGGGAACCTCATA
* *
10219865 CGAGCTGAATAACGTGAAGCTCATA
1 CGAGCTGAATAACGGGAACCTCATA
*
10219890 AGAGCTGAA
1 CGAGCTGAA
10219899 ATCAGTGACC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (25 bp):
CGAGCTGAATAACGGGAACCTCATA
Found at i:10227553 original size:22 final size:24
Alignment explanation
Indices: 10227511--10227555 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 24
10227501 CTACTAAGTT
10227511 TACTTACTTTTCTAACTTAATTCA
1 TACTTACTTTTCTAACTTAATTCA
10227535 TACTT-CTTTTCT-ACTTAATTC
1 TACTTACTTTTCTAACTTAATTC
10227556 TTTGCCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 9 0.43
23 7 0.33
24 5 0.24
ACGTcount: A:0.24, C:0.22, G:0.00, T:0.53
Consensus pattern (24 bp):
TACTTACTTTTCTAACTTAATTCA
Found at i:10227874 original size:12 final size:12
Alignment explanation
Indices: 10227857--10227889 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
10227847 TAGTTTTTCC
10227857 TTTCTTTCTCTT
1 TTTCTTTCTCTT
10227869 TTTCTTTCTCTT
1 TTTCTTTCTCTT
10227881 TTTCTTTCT
1 TTTCTTTCT
10227890 TTCTCCCCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTCTTTCTCTT
Found at i:10227875 original size:16 final size:16
Alignment explanation
Indices: 10227850--10227894 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 16
10227840 TAAACCCTAG
10227850 TTTTTCCTTTCTTTCTC
1 TTTTT-CTTTCTTTCTC
10227867 ---TT-TTTCTTTCTC
1 TTTTTCTTTCTTTCTC
10227879 TTTTTCTTTCTTTCTC
1 TTTTTCTTTCTTTCTC
10227895 CCCTATTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 9
0.73 0.00 0.27
Matches are distributed among these distances:
12 10 0.42
14 2 0.08
15 2 0.08
16 10 0.42
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTTCTTTCTTTCTC
Found at i:10227986 original size:19 final size:19
Alignment explanation
Indices: 10227939--10227975 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
10227929 CTGTTTCTTT
10227939 CTTTCTTTTATTTCATTTG
1 CTTTCTTTTATTTCATTTG
10227958 CTTTCTTTTATTTCATTT
1 CTTTCTTTTATTTCATTT
10227976 CATTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.11, C:0.16, G:0.03, T:0.70
Consensus pattern (19 bp):
CTTTCTTTTATTTCATTTG
Found at i:10230191 original size:10 final size:10
Alignment explanation
Indices: 10230176--10230202 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
10230166 ATTTTCCACC
10230176 GTACCATGCT
1 GTACCATGCT
10230186 GTACCATGCT
1 GTACCATGCT
10230196 GTACCAT
1 GTACCAT
10230203 TTCCCTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.30
Consensus pattern (10 bp):
GTACCATGCT
Found at i:10230893 original size:15 final size:15
Alignment explanation
Indices: 10230873--10230909 Score: 65
Period size: 15 Copynumber: 2.4 Consensus size: 15
10230863 TGTAAGTAAA
10230873 CTTTTACCCTTTACT
1 CTTTTACCCTTTACT
10230888 CTTTTACCCTTTACT
1 CTTTTACCCTTTACT
10230903 CTATTTA
1 CT-TTTA
10230910 ATCATTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.16, C:0.30, G:0.00, T:0.54
Consensus pattern (15 bp):
CTTTTACCCTTTACT
Found at i:10236005 original size:16 final size:16
Alignment explanation
Indices: 10235972--10236018 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
10235962 AAACTTTTAA
*
10235972 GTTCTTTGTT-TTTGTT
1 GTTCTTTCTTCTTT-TT
10235988 GTTCTTTCTTCTTTTT
1 GTTCTTTCTTCTTTTT
*
10236004 GTTTTTTCTTCTTTT
1 GTTCTTTCTTCTTTT
10236019 CTGCGACTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 25 0.89
17 3 0.11
ACGTcount: A:0.00, C:0.13, G:0.11, T:0.77
Consensus pattern (16 bp):
GTTCTTTCTTCTTTTT
Found at i:10237956 original size:15 final size:16
Alignment explanation
Indices: 10237936--10237965 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10237926 TGGTACGTTG
10237936 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
10237951 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
10237966 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:10245485 original size:79 final size:79
Alignment explanation
Indices: 10245402--10245561 Score: 221
Period size: 79 Copynumber: 2.0 Consensus size: 79
10245392 AATCTCATCA
* *
10245402 AATCAATTATACTTAATATAATAATACAAAAGATCATAAAATCAACTTATATCTTCATGGATTAC
1 AATCAATTATACTTAATATAAGAATACAAAAGATCATAAAATCAACTCATATCTTCATGGATTAC
*
10245467 ATATCTCAATATAT
66 ATATCTCAACATAT
* * * * * * **
10245481 AATCAATTGTCCTTAATATAAGGATACAAAAGATCATAAAGTTATCTCATATCTTCATGGATTGT
1 AATCAATTATACTTAATATAAGAATACAAAAGATCATAAAATCAACTCATATCTTCATGGATTAC
10245546 ATATCTCAACATAT
66 ATATCTCAACATAT
10245560 AA
1 AA
10245562 GGTAAATGGA
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
79 70 1.00
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (79 bp):
AATCAATTATACTTAATATAAGAATACAAAAGATCATAAAATCAACTCATATCTTCATGGATTAC
ATATCTCAACATAT
Found at i:10261967 original size:20 final size:21
Alignment explanation
Indices: 10261942--10261993 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
10261932 CAGCCTTTAT
10261942 GGCTCAACATA-GGTTGATGG
1 GGCTCAACATAGGGTTGATGG
* *
10261962 GGCTCAACATAGGGTTGCTGT
1 GGCTCAACATAGGGTTGATGG
*
10261983 GGCTCAGCATA
1 GGCTCAACATA
10261994 AGGCTACTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 11 0.39
21 17 0.61
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (21 bp):
GGCTCAACATAGGGTTGATGG
Found at i:10266320 original size:5 final size:5
Alignment explanation
Indices: 10266300--10266355 Score: 62
Period size: 5 Copynumber: 11.2 Consensus size: 5
10266290 AGTTCTATGC
* *
10266300 TTTAT TTATTT TTTAT TTTA- TTTA- TTTAGA TTTAT TTTAT TTTAT TTTAT
1 TTTAT TT-TAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT
10266350 TTTAT T
1 TTTAT T
10266356 ATGCACTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
4 8 0.18
5 29 0.64
6 8 0.18
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:10270316 original size:11 final size:11
Alignment explanation
Indices: 10270300--10270324 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10270290 CATTTAAGAG
10270300 AAAATGAGTGA
1 AAAATGAGTGA
10270311 AAAATGAGTGA
1 AAAATGAGTGA
10270322 AAA
1 AAA
10270325 CAGAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (11 bp):
AAAATGAGTGA
Found at i:10275892 original size:5 final size:6
Alignment explanation
Indices: 10275875--10275899 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
10275865 AGGTAGTTTA
10275875 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
10275900 TTCCTTTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:10276666 original size:21 final size:22
Alignment explanation
Indices: 10276642--10276712 Score: 78
Period size: 21 Copynumber: 3.4 Consensus size: 22
10276632 TTAGATTTCA
**
10276642 ATTTATTTTTGTAATTTAT-TT
1 ATTTATTTTTAAAATTTATATT
10276663 ATTTA-TTTTAAAATTTATATT
1 ATTTATTTTTAAAATTTATATT
*
10276684 ATTTA-TTTTAAAATTTTCTATT
1 ATTTATTTTTAAAA-TTTATATT
10276706 A-TTATTT
1 ATTTATTT
10276713 ATTTTAAGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
20 11 0.25
21 23 0.52
22 10 0.23
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (22 bp):
ATTTATTTTTAAAATTTATATT
Found at i:10276708 original size:22 final size:21
Alignment explanation
Indices: 10276654--10276719 Score: 89
Period size: 21 Copynumber: 3.0 Consensus size: 21
10276644 TTATTTTTGT
10276654 AATTTAT-TTATTTATTTTAA
1 AATTTATATTATTTATTTTAA
10276674 AATTTATATTATTTATTTTAA
1 AATTTATATTATTTATTTTAA
10276695 AATTTTCTATTATTATTTATTTTAA
1 AA--TT-TA-TATTATTTATTTTAA
10276720 GTTTTTCATA
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
20 7 0.17
21 15 0.37
23 2 0.05
24 2 0.05
25 15 0.37
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
AATTTATATTATTTATTTTAA
Found at i:10276725 original size:25 final size:25
Alignment explanation
Indices: 10276661--10276745 Score: 90
Period size: 25 Copynumber: 3.6 Consensus size: 25
10276651 TGTAATTTAT
10276661 TTATTTATTTTAAAA--TT--TATA
1 TTATTTATTTTAAAATTTTCATATA
10276682 TTATTTATTTTAAAATTTTC-TATTA
1 TTATTTATTTTAAAATTTTCATA-TA
**
10276707 TTATTTATTTTAAGTTTTTCATATA
1 TTATTTATTTTAAAATTTTCATATA
**
10276732 TTATCCATTTTAAA
1 TTATTTATTTTAAA
10276746 CTATTATATG
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
21 15 0.28
23 2 0.04
24 2 0.04
25 33 0.61
26 2 0.04
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (25 bp):
TTATTTATTTTAAAATTTTCATATA
Found at i:10280200 original size:65 final size:64
Alignment explanation
Indices: 10280096--10280270 Score: 219
Period size: 65 Copynumber: 2.7 Consensus size: 64
10280086 TATTCTATTA
* ** * *
10280096 TTACCTTAATGAGGTAAAGCCA-TTTTAAAGAACTGTGCTATCTAAGTTTGCTTTAATGAA-CAG
1 TTACCTTAA-GAGGTAAAGCCACTTTT-AAGAAGTGTGCTATCTAAGTCCGCTTCAAAGAAGCA-
10280159 TG
63 TG
*
10280161 TTACCTTCAAGAGGTAAAGCCACTTTTAAGAAGTGTGCTATCTATGTCCGCTTCAAAGAAGCATG
1 TTACCTT-AAGAGGTAAAGCCACTTTTAAGAAGTGTGCTATCTAAGTCCGCTTCAAAGAAGCATG
* *
10280226 TTACCTTAAAGAGGTAAAGTCACTTTAAAGAAGTGTGCTATCTAA
1 TTACCTT-AAGAGGTAAAGCCACTTTTAAGAAGTGTGCTATCTAA
10280271 ATCCTCTTTA
Statistics
Matches: 97, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
65 89 0.92
66 8 0.08
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (64 bp):
TTACCTTAAGAGGTAAAGCCACTTTTAAGAAGTGTGCTATCTAAGTCCGCTTCAAAGAAGCATG
Found at i:10280286 original size:16 final size:16
Alignment explanation
Indices: 10280265--10280297 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
10280255 GAAGTGTGCT
10280265 ATCTAAATCCTCTTTA
1 ATCTAAATCCTCTTTA
*
10280281 ATCTAAATCCTTTTTA
1 ATCTAAATCCTCTTTA
10280297 A
1 A
10280298 AGAAGTGTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.45
Consensus pattern (16 bp):
ATCTAAATCCTCTTTA
Found at i:10285199 original size:24 final size:23
Alignment explanation
Indices: 10285138--10285201 Score: 83
Period size: 25 Copynumber: 2.7 Consensus size: 23
10285128 TTCTGACCCA
10285138 CAGCTCGTGTGAGCATTCTGATT
1 CAGCTCGTGTGAGCATTCTGATT
* *
10285161 CATAGCTCGTTTGAGCATTTTGATTT
1 C--AGCTCGTGTGAGCATTCTGA-TT
10285187 CAGCTCGTGTGAGCA
1 CAGCTCGTGTGAGCA
10285202 AACATTTACA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 1 0.03
24 13 0.37
25 18 0.51
26 3 0.09
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (23 bp):
CAGCTCGTGTGAGCATTCTGATT
Found at i:10293191 original size:47 final size:47
Alignment explanation
Indices: 10293113--10293602 Score: 784
Period size: 47 Copynumber: 10.3 Consensus size: 47
10293103 CCCTTCGGGA
* * * * * *
10293113 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
10293160 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
10293207 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10293254 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10293301 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
10293350 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10293399 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
10293446 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCA-TCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10293494 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10293541 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10293590 CTTATCACATATA
1 CTTATCACATATA
10293603 CTATCATGTA
Statistics
Matches: 416, Mismatches: 20, Indels: 14
0.92 0.04 0.03
Matches are distributed among these distances:
46 33 0.08
47 197 0.47
48 12 0.03
49 174 0.42
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:10293347 original size:96 final size:95
Alignment explanation
Indices: 10293113--10293602 Score: 797
Period size: 96 Copynumber: 5.1 Consensus size: 95
10293103 CCCTTCGGGA
* * * * * * * *
10293113 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
10293177 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
* *
10293207 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
10293271 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
10293301 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
* *
10293366 ACACTTTCACATTCATCACATTGGCCATTCGGC
63 ACACTTTCACATTCATCACATCGGCCATTAGGC
10293399 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
*
10293464 ACTTTCACATTCATCACATCGGCCA-TCGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
10293494 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
10293559 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
10293590 CTTATCACATATA
1 CTTATCACATATA
10293603 CTATCATGTA
Statistics
Matches: 375, Mismatches: 16, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
94 91 0.24
95 95 0.25
96 144 0.38
98 45 0.12
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:10296965 original size:40 final size:40
Alignment explanation
Indices: 10296888--10297287 Score: 581
Period size: 40 Copynumber: 10.1 Consensus size: 40
10296878 CGAATACACG
* * * *
10296888 TCACTAGCATGATTGCTCTTCGGGACCTAGCCTGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * * *
10296928 ACACCAGCACGAATGCTCTTCGAGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCG-GGACTTAGCCCGGATACA
* * *
10296968 TTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
**
10297008 TCACTAGCATGAATGCTCTTCGGGACTTAGTTCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
10297048 TCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
10297088 TCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
10297127 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
10297167 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
10297207 TAACTAGCATGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
10297247 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
10297286 TC
1 TC
10297288 GTCGAGACCT
Statistics
Matches: 325, Mismatches: 32, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
39 42 0.13
40 281 0.86
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:10297229 original size:199 final size:199
Alignment explanation
Indices: 10296888--10297287 Score: 597
Period size: 199 Copynumber: 2.0 Consensus size: 199
10296878 CGAATACACG
* * * *
10296888 TCACTAGCATGATTGCTCTTCGGGACCTAGCCTGGATATAACACCAGCACGAATGCTCTTCGAGG
1 TCACTAGCACGAATGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAGG
* * * *
10296953 TTTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCAT
66 CTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCAT
** *
10297018 GAATGCTCTTCGGGACTTAGTTCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGTCCGG
131 GAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG
10297083 ATACA
196 AT-CA
* * * *
10297088 TCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCG-GG
1 TCACTAGCACGAATGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAGG
* * *
10297151 ACTTAGCCCGGGTACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATAACTAGCA
66 -CTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCA
*
10297216 TGAATGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCG
130 TGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCG
10297281 GATCA
195 GATCA
10297286 TC
1 TC
10297288 GTCGAGACCT
Statistics
Matches: 180, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
198 6 0.03
199 155 0.86
200 19 0.11
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (199 bp):
TCACTAGCACGAATGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAGG
CTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCAT
GAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG
ATCA
Found at i:10299586 original size:25 final size:25
Alignment explanation
Indices: 10299558--10299635 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
10299548 CTCGGCCCTG
10299558 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
**** ** *
10299583 TCACAT-CGGCCA-TTAGAC-CTCA
1 TCACATATATACACTTTCACATTCA
10299605 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
10299630 TCACAT
1 TCACAT
10299636 CGGCCATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 9 0.25
23 6 0.17
24 6 0.17
25 15 0.42
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.32
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:10299681 original size:49 final size:49
Alignment explanation
Indices: 10299507--10299956 Score: 652
Period size: 47 Copynumber: 9.3 Consensus size: 49
10299497 CCCTTCGGGA
* * * * *
10299507 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
10299554 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
10299601 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10299648 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
10299697 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
10299746 CTTATCAC--ATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10299793 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCAT--CA-----CATCGGCCATTAGGC
10299849 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10299897 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10299944 CTTATCACATATA
1 CTTATCACATATA
10299957 CTATCATGTA
Statistics
Matches: 368, Mismatches: 19, Indels: 30
0.88 0.05 0.07
Matches are distributed among these distances:
46 37 0.10
47 140 0.38
48 10 0.03
49 131 0.36
51 2 0.01
54 2 0.01
56 46 0.12
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:10299704 original size:96 final size:96
Alignment explanation
Indices: 10299507--10299956 Score: 649
Period size: 96 Copynumber: 4.6 Consensus size: 96
10299497 CCCTTCGGGA
* * * * * * * *
10299507 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
10299570 ACTTTCACATTCATCACATCGGCCATTAGAC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
10299601 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
10299666 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
10299697 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
10299760 ACACTTTCACATTCATCACATCAGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
10299793 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATCGGCCATTAGGCCTTATCACA
1 CTTATCAC--ATATATACACTTTCACATTCAT--CA-----CATCGGCCATTAGGCCTTATCACA
10299858 TATATATACACTTTCACATTCATCACATCGGCCATTA-GC
57 TATATATACACTTTCACATTCATCACATCGGCCATTAGGC
10299897 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
10299957 CTATCATGTA
Statistics
Matches: 326, Mismatches: 17, Indels: 25
0.89 0.05 0.07
Matches are distributed among these distances:
94 46 0.14
95 28 0.09
96 115 0.35
98 47 0.14
100 2 0.01
102 22 0.07
103 21 0.06
104 10 0.03
105 35 0.11
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:10299850 original size:56 final size:56
Alignment explanation
Indices: 10299778--10299938 Score: 243
Period size: 56 Copynumber: 3.1 Consensus size: 56
10299768 ACATTCATCA
*
10299778 CATCAGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGC
1 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGC
10299834 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT--CA-----
1 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGC
10299883 CATCGGCCATTA-GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGC
1 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGC
10299936 CAT
1 CAT
10299939 TAGGCCTTAT
Statistics
Matches: 97, Mismatches: 1, Indels: 17
0.84 0.01 0.15
Matches are distributed among these distances:
46 22 0.23
48 12 0.12
49 12 0.12
53 3 0.03
54 2 0.02
56 46 0.47
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (56 bp):
CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGC
Found at i:10299921 original size:46 final size:47
Alignment explanation
Indices: 10299834--10299956 Score: 221
Period size: 46 Copynumber: 2.6 Consensus size: 47
10299824 TCACATCGGC
10299834 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
1 CATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
10299883 CATCGGCCATTA-GCCTTATCACATATATACACTTTCACATTCATCA
1 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
10299929 CATCGGCCATTAGGCCTTATCACATATA
1 CATCGGCCATTAGGCCTTATCACATATA
10299957 CTATCATGTA
Statistics
Matches: 73, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
46 36 0.49
47 15 0.21
48 10 0.14
49 12 0.16
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
Found at i:10322610 original size:16 final size:16
Alignment explanation
Indices: 10322589--10322658 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
10322579 TTTGGTTCGC
* *
10322589 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
* *
10322605 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
*
10322621 TGTAATAGAATAGAGG
1 TGTAATGGAATAGAGG
10322637 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
10322653 TGTAAT
1 TGTAAT
10322659 AGCAAATCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.33, C:0.00, G:0.34, T:0.33
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:10322635 original size:32 final size:32
Alignment explanation
Indices: 10322599--10322660 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
10322589 TGTATTGGAT
* *
10322599 TAGAGGTGTATTGGATTAGAGGTGTAATAGAA
1 TAGAGGTGTAATGGAATAGAGGTGTAATAGAA
10322631 TAGAGGTGTAATGGAATAGAGGTGTAATAG
1 TAGAGGTGTAATGGAATAGAGGTGTAATAG
10322661 CAAATCAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (32 bp):
TAGAGGTGTAATGGAATAGAGGTGTAATAGAA
Found at i:10322691 original size:45 final size:44
Alignment explanation
Indices: 10322637--10322731 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
10322627 AGAATAGAGG
*
10322637 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
10322682 TGTAATGGAATAGAGGCGTAATAGTAATCCTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
10322726 TGTAAT
1 TGTAAT
10322732 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 22 0.49
45 23 0.51
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:10322912 original size:18 final size:17
Alignment explanation
Indices: 10322891--10322925 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10322881 TTATTATTAA
*
10322891 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
10322909 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
10322926 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:10327676 original size:44 final size:44
Alignment explanation
Indices: 10327626--10327776 Score: 257
Period size: 44 Copynumber: 3.4 Consensus size: 44
10327616 TTGTCCCTTG
* *
10327626 TCACTTGTCACTGGTCAGATAAGTGTAGCTAAAGCTACCATTTA
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTA
*
10327670 TCACTTGTCACTGATTAGATAAGTGTAGCTAAAGCTACCACTTA
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTA
*
10327714 TCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTTA
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTA
*
10327758 ACACTTGTCACTGATCAGA
1 TCACTTGTCACTGATCAGA
10327777 AGTACTCAAA
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 101 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (44 bp):
TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTA
Found at i:10331613 original size:17 final size:18
Alignment explanation
Indices: 10331588--10331624 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
10331578 ATTTGACACT
*
10331588 TTTTTTCACTAT-CCAAA
1 TTTTCTCACTATACCAAA
10331605 TTTTCTCACTATACCAAA
1 TTTTCTCACTATACCAAA
10331623 TT
1 TT
10331625 AAAACCCTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.46
Consensus pattern (18 bp):
TTTTCTCACTATACCAAA
Found at i:10333879 original size:15 final size:16
Alignment explanation
Indices: 10333859--10333892 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10333849 TTTTTTTTTC
10333859 TTAC-AATTTAGTCAT
1 TTACAAATTTAGTCAT
*
10333874 TTACAAATTTAGTTAT
1 TTACAAATTTAGTCAT
10333890 TTA
1 TTA
10333893 ATTGATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (16 bp):
TTACAAATTTAGTCAT
Found at i:10344313 original size:50 final size:49
Alignment explanation
Indices: 10344238--10344474 Score: 222
Period size: 50 Copynumber: 4.6 Consensus size: 49
10344228 TTTTCTGTAC
* * ** * *
10344238 TGCCAATGCCATATCCCAGATATGGTCTTACTTGGGAGTTATCATATTGG
1 TGCCAACGCCATATCCCAGACATGGTCTTAC-TGGGACCTCTCATCTTGG
* * * * * *
10344288 TGCCCATGCCATGTCCCAAACATGGTCTTACGGGGTACCTCTCATCTTAG
1 TGCCAACGCCATATCCCAGACATGGTCTTACTGGG-ACCTCTCATCTTGG
* * *
10344338 TGCCAACGCCATGTTCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATATCCCAGACATGGTCTTAC-TGGGACCTCTCATCTTGG
* *
10344388 TGCCAACGCCATATCCCAGACATGGTCTTATATGGGACCTCTCATAATCTCAATGA
1 TGCCAACGCCATATCCCAGACATGGTCTTA-CTGGGACCTCTC---ATCT---TGG
*
10344444 TGCCAATGCCATATCCCAGACATGGTCTTAC
1 TGCCAACGCCATATCCCAGACATGGTCTTAC
10344475 ACTGGCTCAC
Statistics
Matches: 154, Mismatches: 24, Indels: 13
0.81 0.13 0.07
Matches are distributed among these distances:
49 3 0.02
50 114 0.74
51 3 0.02
53 4 0.03
56 30 0.19
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
TGCCAACGCCATATCCCAGACATGGTCTTACTGGGACCTCTCATCTTGG
Found at i:10344520 original size:48 final size:48
Alignment explanation
Indices: 10344449--10344569 Score: 224
Period size: 48 Copynumber: 2.5 Consensus size: 48
10344439 AATGATGCCA
*
10344449 ATGCCATATCCCAGACATGGTCTTACACTGGCTCACATATCGATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGATGTCG
*
10344497 ATGCCATGTCCCAGACATGGTCTTACACTTGCTCACATATCGATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGATGTCG
10344545 ATGCCATGTCCCAGACATGGTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
10344570 TACGAGATCG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGATGTCG
Found at i:10346828 original size:28 final size:28
Alignment explanation
Indices: 10346797--10346851 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
10346787 AATCTTGATG
10346797 TTCTTACCTTGTGCTATTGATTTCAATT
1 TTCTTACCTTGTGCTATTGATTTCAATT
10346825 TTCTTACCTTGTGCTATTGATTTCAAT
1 TTCTTACCTTGTGCTATTGATTTCAAT
10346852 CTTTAACTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.11, T:0.53
Consensus pattern (28 bp):
TTCTTACCTTGTGCTATTGATTTCAATT
Found at i:10347440 original size:30 final size:30
Alignment explanation
Indices: 10347404--10347470 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
10347394 ACCCCTAAAA
** * *
10347404 TATTTACACTATTGGTCCTTCAAATTTT-TG
1 TATTTACACT-TTAATCCCTCAAATTTTGAG
10347434 TATTTACACTTTAATCCCTCAAATTTTGAG
1 TATTTACACTTTAATCCCTCAAATTTTGAG
10347464 TATTTAC
1 TATTTAC
10347471 TCTTGGGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 14 0.44
30 18 0.56
ACGTcount: A:0.27, C:0.18, G:0.07, T:0.48
Consensus pattern (30 bp):
TATTTACACTTTAATCCCTCAAATTTTGAG
Found at i:10363627 original size:7 final size:7
Alignment explanation
Indices: 10363615--10363639 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10363605 CTCCTACTAC
10363615 ATTTATT
1 ATTTATT
10363622 ATTTATT
1 ATTTATT
10363629 ATTTATT
1 ATTTATT
10363636 ATTT
1 ATTT
10363640 CTAAGTCGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
ATTTATT
Found at i:10364362 original size:29 final size:29
Alignment explanation
Indices: 10364320--10364380 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
10364310 TAGTTTAGTC
10364320 ATTTCTTATTTTGGTAAGTGAGGGAGTTG
1 ATTTCTTATTTTGGTAAGTGAGGGAGTTG
10364349 ATTTCTTATTTTGGTAAGTGAGGGAGTTG
1 ATTTCTTATTTTGGTAAGTGAGGGAGTTG
10364378 ATT
1 ATT
10364381 CATGGTCCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.21, C:0.03, G:0.30, T:0.46
Consensus pattern (29 bp):
ATTTCTTATTTTGGTAAGTGAGGGAGTTG
Found at i:10365533 original size:29 final size:31
Alignment explanation
Indices: 10365479--10365539 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
10365469 GAATCAAAGT
*
10365479 TAAGAAATTATTTTTTTAATA-TTTTTTATA
1 TAAGAAATTACTTTTTTAATAGTTTTTTATA
10365509 TAAGAAATT-CTTTTTTAATAGTTTTTTATA
1 TAAGAAATTACTTTTTTAATAGTTTTTTATA
10365539 T
1 T
10365540 TATTAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (31 bp):
TAAGAAATTACTTTTTTAATAGTTTTTTATA
Found at i:10365866 original size:18 final size:18
Alignment explanation
Indices: 10365845--10365885 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
10365835 AAATAAACTT
10365845 TTTTTGAAATATAATTTA
1 TTTTTGAAATATAATTTA
** *
10365863 TTTTTGTTATGTAATTTA
1 TTTTTGAAATATAATTTA
10365881 TTTTT
1 TTTTT
10365886 ACTCTACAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (18 bp):
TTTTTGAAATATAATTTA
Found at i:10367766 original size:53 final size:53
Alignment explanation
Indices: 10367691--10367798 Score: 153
Period size: 53 Copynumber: 2.0 Consensus size: 53
10367681 ACTATGCAAT
* * *
10367691 TGATATTGTTACTGTTACTGTATTGACTAGCATGTTGTGCTATATGACTGATA
1 TGATATTGTTACTGTTACTGTATTGACTAGCATGATATGCTACATGACTGATA
* ** *
10367744 TGATATTGTTACTGTTATTGTATTGTTTAGCATGATATGCTACATGATTGATA
1 TGATATTGTTACTGTTACTGTATTGACTAGCATGATATGCTACATGACTGATA
10367797 TG
1 TG
10367799 CCATTATTTC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.25, C:0.09, G:0.20, T:0.45
Consensus pattern (53 bp):
TGATATTGTTACTGTTACTGTATTGACTAGCATGATATGCTACATGACTGATA
Found at i:10372906 original size:19 final size:20
Alignment explanation
Indices: 10372882--10372923 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
10372872 GCAATCTTAA
10372882 ATATG-ATCTTAGATATGAT
1 ATATGAATCTTAGATATGAT
10372901 ATATGAAATCTTAGATATGAT
1 ATATG-AATCTTAGATATGAT
10372922 AT
1 AT
10372924 GCAATCTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.24
21 16 0.76
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (20 bp):
ATATGAATCTTAGATATGAT
Found at i:10372924 original size:19 final size:19
Alignment explanation
Indices: 10372887--10372942 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
10372877 CTTAAATATG
10372887 ATCTTAGATATGATATATGAA
1 ATCTTAGATATG--ATATGAA
*
10372908 ATCTTAGATATGATATGCA
1 ATCTTAGATATGATATGAA
10372927 ATCTTAGA-A-GATATGA
1 ATCTTAGATATGATATGA
10372943 TTTTGTAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.18
18 1 0.03
19 14 0.42
21 12 0.36
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (19 bp):
ATCTTAGATATGATATGAA
Found at i:10372941 original size:22 final size:23
Alignment explanation
Indices: 10372892--10372957 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
10372882 ATATGATCTT
*
10372892 AGATATGATATATGAAATCTT---
1 AGATATGAT-TATGCAATCTTAGA
10372913 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
10372935 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
10372958 GATTTAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
19 10 0.26
21 8 0.21
22 8 0.21
23 12 0.32
ACGTcount: A:0.39, C:0.06, G:0.17, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:10373283 original size:3 final size:3
Alignment explanation
Indices: 10373275--10373313 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
10373265 TGTTATTAAG
* * *
10373275 TTA TTA TTA TTG TTG TTA TTA TTA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
10373314 CTATATATAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:10373455 original size:17 final size:17
Alignment explanation
Indices: 10373433--10373467 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
10373423 GCATAACTTA
* *
10373433 TATATATATTTACATTT
1 TATATACATATACATTT
10373450 TATATACATATACATTT
1 TATATACATATACATTT
10373467 T
1 T
10373468 TTATTTCCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATACATATACATTT
Found at i:10373637 original size:25 final size:25
Alignment explanation
Indices: 10373602--10373656 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
10373592 ATTAATTAAT
*
10373602 TTTA-ATATATGTAGTTATTAT-TTG
1 TTTATATATATGT-GTAATTATCTTG
*
10373626 TTTATATATATGTGTAATTATCTTT
1 TTTATATATATGTGTAATTATCTTG
10373651 TTTATA
1 TTTATA
10373657 ATCTATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 11 0.41
25 16 0.59
ACGTcount: A:0.29, C:0.02, G:0.09, T:0.60
Consensus pattern (25 bp):
TTTATATATATGTGTAATTATCTTG
Found at i:10373669 original size:32 final size:31
Alignment explanation
Indices: 10373628--10373687 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
10373618 ATTATTTGTT
* *
10373628 TATATATATGTGTAATTATCTTTTTTATAATC
1 TATATATATGTAT-ATAATCTTTTTTATAATC
*
10373660 TATATATATGTATATAATTTTTTTTATA
1 TATATATATGTATATAATCTTTTTTATA
10373688 TAAGTACATG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 13 0.52
32 12 0.48
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.58
Consensus pattern (31 bp):
TATATATATGTATATAATCTTTTTTATAATC
Found at i:10373844 original size:8 final size:8
Alignment explanation
Indices: 10373833--10373867 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
10373823 GCTTTGCATG
10373833 TTATTGAT
1 TTATTGAT
10373841 TTATT--T
1 TTATTGAT
10373847 TTATTGAT
1 TTATTGAT
10373855 TTATTGAT
1 TTATTGAT
10373863 TTATT
1 TTATT
10373868 TGTTTATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.24
8 19 0.76
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.69
Consensus pattern (8 bp):
TTATTGAT
Found at i:10373852 original size:14 final size:14
Alignment explanation
Indices: 10373833--10373859 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10373823 GCTTTGCATG
10373833 TTATTGATTTATTT
1 TTATTGATTTATTT
10373847 TTATTGATTTATT
1 TTATTGATTTATT
10373860 GATTTATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (14 bp):
TTATTGATTTATTT
Found at i:10376195 original size:16 final size:16
Alignment explanation
Indices: 10376157--10376199 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
10376147 CCTCTCTTCT
10376157 TTTGCATT-CA-TAGC
1 TTTGCATTGCATTAGC
*
10376171 ATT-CATTGCATTAGC
1 TTTGCATTGCATTAGC
10376186 TTTGCATTGCATTA
1 TTTGCATTGCATTA
10376200 TATACATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 4 0.17
14 4 0.17
15 6 0.25
16 10 0.42
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (16 bp):
TTTGCATTGCATTAGC
Found at i:10378419 original size:44 final size:45
Alignment explanation
Indices: 10378273--10378810 Score: 524
Period size: 44 Copynumber: 12.2 Consensus size: 45
10378263 TAGCAGGTTC
* *
10378273 TGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * * * *
10378316 TGTCTTTCC-ATATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCT
1 TGTC-TTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * * *
10378361 TGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAGCAGGTCC
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * * *
10378405 TATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GTAGATAT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * * * *
10378448 TGTCTTCCCATATTGGTGGCGGAGTAGATTGAAGAAAGCAGATCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * *
10378493 TGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCC
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * *
10378537 TGTCTTTCTATATTGGTAGTGAAGTGGATTGAAGAT-GCAGATCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * * *
10378581 TGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATAT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * *
10378626 TGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* *
10378670 TGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * * * * *
10378713 TGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
* * *
10378758 TGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCTGATCT
1 TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
*
10378802 TGCCTTCCT
1 TGTCTTCCT
10378811 GCACCGGCAG
Statistics
Matches: 394, Mismatches: 89, Indels: 23
0.78 0.18 0.05
Matches are distributed among these distances:
43 56 0.14
44 245 0.62
45 93 0.24
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.32
Consensus pattern (45 bp):
TGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCT
Found at i:10378499 original size:132 final size:132
Alignment explanation
Indices: 10378262--10378795 Score: 897
Period size: 132 Copynumber: 4.0 Consensus size: 132
10378252 ATCAGTGAAT
* *
10378262 ATAGCAGGTTCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTTCCAT
1 ATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
* * * *
10378327 ATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAA
66 ATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
10378392 AG
131 AG
* * *
10378394 ATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGTAGATATTGTCTTCCCAT
1 ATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
* *
10378459 ATTGGTGGCGGAGTAGATTGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
66 ATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
10378524 AG
131 AG
* * *
10378526 ATAGCAGATCCTGTCTTTCTATATTGGTAGTGAAGTGGATTGAAGATGCAGATCTTGTCTTCCCA
1 ATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
*
10378591 TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCG
65 TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
10378656 AAG
130 AAG
*
10378659 ATAGCAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
1 ATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
* *
10378724 ACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
66 ATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
10378789 AG
131 AG
10378791 ATAGC
1 ATAGC
10378796 TGATCTTGCC
Statistics
Matches: 376, Mismatches: 25, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
132 253 0.67
133 123 0.33
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (132 bp):
ATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
ATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
AG
Found at i:10378765 original size:265 final size:264
Alignment explanation
Indices: 10378262--10378810 Score: 900
Period size: 265 Copynumber: 2.1 Consensus size: 264
10378252 ATCAGTGAAT
* * *
10378262 ATAGCAGGTTCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTTCCAT
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
* * * *
10378327 ATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAA
66 ATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCAA
*
10378392 AGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGTAGATATTGTCTTCCC
131 AGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATATTGTCTTCCC
* * *
10378457 ATATTGGTGGCGGAGTAGATTGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
196 ATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
10378522 GAAG
261 GAAG
* *
10378526 ATAGCAGATCCTGTCTTTCTATATTGGTAGTGAAGTGGATTGAAGATGCAGATCTTGTCTTCCCA
1 ATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
*
10378591 TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCG
65 TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCA
* * *
10378656 AAGATAGCAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
130 AAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATATTGTCTTCC
*
10378721 CATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
195 CATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
10378786 CGAAG
260 CGAAG
* * *
10378791 ATAGCTGATCTTGCCTTCCT
1 ATAGCAGATCCTGTCTTCCT
10378811 GCACCGGCAG
Statistics
Matches: 262, Mismatches: 22, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
264 27 0.10
265 235 0.90
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (264 bp):
ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
ATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCAA
AGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATATTGTCTTCCC
ATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
GAAG
Found at i:10378902 original size:88 final size:88
Alignment explanation
Indices: 10378791--10379108 Score: 465
Period size: 88 Copynumber: 3.6 Consensus size: 88
10378781 TAGATCGAAG
* * *
10378791 ATAGCTGATCTTGCCTTCCTGCACCGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
10378856 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * * *
10378879 ATAGTAGATCTTGCCTTCTTGCACCAACAGCGAAGCAGATCGAAGACACCAGCCTTACCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
10378944 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * ** * * *
10378967 GTAGCAGATATTTTCTTCCTACACCGACAGCGAAGTAGATCAAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
** *
10379032 GGTTGCAGTAGAGCAGGTTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* *
10379055 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGATGACCCCAGCC
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCC
10379109 CTATCTCCCT
Statistics
Matches: 200, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 200 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.19
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
GGTTGCAGCGGAGCAGGCTAAAA
Found at i:10378921 original size:265 final size:264
Alignment explanation
Indices: 10378380--10378924 Score: 614
Period size: 265 Copynumber: 2.1 Consensus size: 264
10378370 GTATTGGCGT
* *
10378380 GAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGTAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
* * *
10378445 TATTGTCTTCCCATATTGGTGGCGGAGTAGATTGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TATTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
* * * ** * * ** * **
10378510 GTGAAGTAGATCGAAGATAGCAGATCCTGTCTTTCTATATTGGTAGTGAAGTGGATTGAAGATGC
131 GTGAAGTAGATCGAAGATAGCAGATCCTGCCTTCCTACACCGGCAGCGAAGCAGATCGAAGAACC
* * * * * * * **
10378575 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATT
196 AGACCTTGTCCTCCCATA-TGGTGGCGAAGCAGAGCGAAAAAAGCAGATATTGCCTTCATGCACC
** *
10378640 GGCGT
260 AACGC
* *
10378645 GAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
* *
10378710 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
66 TATTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
* * *
10378775 GTGAAGTAGATCGAAGATAGCTGATCTTGCCTTCCTGCACCGGCAGCGAAGCAGATCGAAGACAC
131 GTGAAGTAGATCGAAGATAGCAGATCCTGCCTTCCTACACCGGCAGCGAAGCAGATCGAAGA-AC
* * * * *
10378840 CAG-CCTTG-CCTCCC-TA-GGTTGCAGCGGAGCAG-GCTAAAAATAGTAGATCTTGCCTTCTTG
195 CAGACCTTGTCCTCCCATATGG-TG--GCGAAGCAGAGCGAAAAA-AGCAGATATTGCCTTCATG
10378900 CACCAACAGC
256 CACCAAC-GC
*
10378910 GAAGCAGATCGAAGA
1 GAAGTAGATCGAAGA
10378925 CACCAGCCTT
Statistics
Matches: 232, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
261 2 0.01
262 2 0.01
263 7 0.03
264 29 0.12
265 189 0.81
266 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (264 bp):
GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
TATTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
GTGAAGTAGATCGAAGATAGCAGATCCTGCCTTCCTACACCGGCAGCGAAGCAGATCGAAGAACC
AGACCTTGTCCTCCCATATGGTGGCGAAGCAGAGCGAAAAAAGCAGATATTGCCTTCATGCACCA
ACGC
Found at i:10379178 original size:44 final size:44
Alignment explanation
Indices: 10379108--10379317 Score: 280
Period size: 44 Copynumber: 4.8 Consensus size: 44
10379098 TGACCCCAGC
* * *
10379108 CCTATCTCCCTGGTCAACAGTAGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
*
10379152 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * *
10379196 TCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGT-AGGT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA-AT
**
10379240 TTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
10379284 CCTATCTCCCTGAG-CAGCAGTGGAGTAAGTTGAA
1 CCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
10379318 AATAGCAGAT
Statistics
Matches: 146, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
43 1 0.01
44 143 0.98
45 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:10380122 original size:12 final size:12
Alignment explanation
Indices: 10380105--10380130 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10380095 AGGATATGCA
10380105 ATCTTAGATATG
1 ATCTTAGATATG
10380117 ATCTTAGATATG
1 ATCTTAGATATG
10380129 AT
1 AT
10380131 ATATGCAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (12 bp):
ATCTTAGATATG
Found at i:10380153 original size:19 final size:20
Alignment explanation
Indices: 10380117--10380164 Score: 80
Period size: 19 Copynumber: 2.4 Consensus size: 20
10380107 CTTAGATATG
10380117 ATCTTAGATATGATATATGCA
1 ATCTTAGATATGA-ATATGCA
10380138 ATCTTAGATATG-ATATGCA
1 ATCTTAGATATGAATATGCA
10380157 ATCTTAGA
1 ATCTTAGA
10380165 AGATATGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 15 0.56
21 12 0.44
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (20 bp):
ATCTTAGATATGAATATGCA
Found at i:10380186 original size:23 final size:22
Alignment explanation
Indices: 10380122--10380187 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 22
10380112 ATATGATCTT
10380122 AGATATGATATATGCAATCTT---
1 AGATATG--ATATGCAATCTTAGA
10380143 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCTTAGA
* *
10380165 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGCAATCTTAGA
10380188 GATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 12 0.31
21 7 0.18
22 8 0.21
23 12 0.31
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATCTTAGA
Found at i:10380515 original size:3 final size:3
Alignment explanation
Indices: 10380507--10380554 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
10380497 TATTAAGTTG
* * * *
10380507 TTA TTA TTA TTG TTA TTA TTA TCA TCA TCA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
10380555 CTATATATTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:10380522 original size:23 final size:22
Alignment explanation
Indices: 10380460--10380524 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 22
10380450 AGTTTTTTTT
*
10380460 TTTTATTATTTATTTTTATTAAA
1 TTTTATTA-TTATTGTTATTAAA
* * *
10380483 TTTGATT-TTCTTGTTATTAAG
1 TTTTATTATTATTGTTATTAAA
10380504 TTGTTATTATTATTGTTATTA
1 TT-TTATTATTATTGTTATTA
10380525 TTATCATCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 13 0.38
22 4 0.12
23 17 0.50
ACGTcount: A:0.25, C:0.02, G:0.08, T:0.66
Consensus pattern (22 bp):
TTTTATTATTATTGTTATTAAA
Found at i:10380706 original size:17 final size:17
Alignment explanation
Indices: 10380675--10380718 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
10380665 CATAACTTTT
*
10380675 ATATACA-TATATATAC
1 ATATACATTTTATATAC
*
10380691 ATTTACATTTTATATAC
1 ATATACATTTTATATAC
10380708 ATATACATTTT
1 ATATACATTTT
10380719 TTATTTCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATACATTTTATATAC
Found at i:10380770 original size:117 final size:117
Alignment explanation
Indices: 10380630--10380865 Score: 463
Period size: 117 Copynumber: 2.0 Consensus size: 117
10380620 TTATAAACAC
10380630 ATGCACATATTATATATATATTATTATTCTATTTGCATAACTTTTATATACATATATATACATTT
1 ATGCACATATTATATATATATTATTATTCTATTTGCATAACTTTTATATACATATATATACATTT
10380695 ACATTTTATATACATATACATTTTTTATTTCCTAACTTTTATAAGCATAAAT
66 ACATTTTATATACATATACATTTTTTATTTCCTAACTTTTATAAGCATAAAT
10380747 ATGCACATATTATATATATATTATTATTCTATTTGCATAACTTTTATATACATATATATACATTT
1 ATGCACATATTATATATATATTATTATTCTATTTGCATAACTTTTATATACATATATATACATTT
*
10380812 ACATTTTATATACATATACATTTTTTATTTCCTAACTTTTATAAGCATATAT
66 ACATTTTATATACATATACATTTTTTATTTCCTAACTTTTATAAGCATAAAT
10380864 AT
1 AT
10380866 ATTTTTATAT
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
117 118 1.00
ACGTcount: A:0.36, C:0.12, G:0.03, T:0.49
Consensus pattern (117 bp):
ATGCACATATTATATATATATTATTATTCTATTTGCATAACTTTTATATACATATATATACATTT
ACATTTTATATACATATACATTTTTTATTTCCTAACTTTTATAAGCATAAAT
Found at i:10380823 original size:17 final size:17
Alignment explanation
Indices: 10380792--10380835 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
10380782 CATAACTTTT
*
10380792 ATATACA-TATATATAC
1 ATATACATTTTATATAC
*
10380808 ATTTACATTTTATATAC
1 ATATACATTTTATATAC
10380825 ATATACATTTT
1 ATATACATTTT
10380836 TTATTTCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATACATTTTATATAC
Found at i:10380878 original size:60 final size:60
Alignment explanation
Indices: 10380667--10380866 Score: 252
Period size: 60 Copynumber: 3.4 Consensus size: 60
10380657 TCTATTTGCA
10380667 TAACTTTTATATACATATATATACATTTACATTTTATATACATATACATTTTTTATTTCC
1 TAACTTTTATATACATATATATACATTTACATTTTATATACATATACATTTTTTATTTCC
** * * * * *
10380727 TAACTTTTATA-AGCATA-A-AT--ATGCACATATTATATATATAT-TATTATTCTATTTGCA
1 TAACTTTTATATA-CATATATATACATTTACATTTTATATACATATACATT-TTTTATTT-CC
10380784 TAACTTTTATATACATATATATACATTTACATTTTATATACATATACATTTTTTATTTCC
1 TAACTTTTATATACATATATATACATTTACATTTTATATACATATACATTTTTTATTTCC
10380844 TAACTTTTATA-AGCATATATATA
1 TAACTTTTATATA-CATATATATA
10380867 TTTTTATATT
Statistics
Matches: 116, Mismatches: 14, Indels: 20
0.77 0.09 0.13
Matches are distributed among these distances:
55 3 0.03
56 24 0.21
57 16 0.14
58 4 0.03
59 5 0.04
60 37 0.32
61 24 0.21
62 3 0.03
ACGTcount: A:0.37, C:0.12, G:0.02, T:0.49
Consensus pattern (60 bp):
TAACTTTTATATACATATATATACATTTACATTTTATATACATATACATTTTTTATTTCC
Found at i:10381032 original size:30 final size:30
Alignment explanation
Indices: 10380996--10381052 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
10380986 TATTTGTTTA
10380996 TATATATATGTAAAT-ATCTTTTTTATAATC
1 TATATATATGTAAATAAT-TTTTTTATAATC
*
10381026 TATATATATGTATATAATTTTTTTATA
1 TATATATATGTAAATAATTTTTTTATA
10381053 TATGTACATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (30 bp):
TATATATATGTAAATAATTTTTTTATAATC
Found at i:10382347 original size:16 final size:17
Alignment explanation
Indices: 10382313--10382349 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
10382303 TATAAAAATG
10382313 TATAAAACATCAGATTT
1 TATAAAACATCAGATTT
*
10382330 TATAAAATATCA-ATTT
1 TATAAAACATCAGATTT
10382346 TATA
1 TATA
10382350 TGTCTTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (17 bp):
TATAAAACATCAGATTT
Found at i:10384752 original size:17 final size:17
Alignment explanation
Indices: 10384730--10384762 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10384720 TTAATTACTA
10384730 AAATTTAAATTTATTTT
1 AAATTTAAATTTATTTT
*
10384747 AAATTTGAATTTATTT
1 AAATTTAAATTTATTT
10384763 AAAAATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
AAATTTAAATTTATTTT
Found at i:10384912 original size:7 final size:7
Alignment explanation
Indices: 10384900--10384945 Score: 92
Period size: 7 Copynumber: 6.6 Consensus size: 7
10384890 TTTTGCATGC
10384900 AAAATAA
1 AAAATAA
10384907 AAAATAA
1 AAAATAA
10384914 AAAATAA
1 AAAATAA
10384921 AAAATAA
1 AAAATAA
10384928 AAAATAA
1 AAAATAA
10384935 AAAATAA
1 AAAATAA
10384942 AAAA
1 AAAA
10384946 AAATTTATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAATAA
Found at i:10388953 original size:24 final size:22
Alignment explanation
Indices: 10388912--10388955 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
10388902 CATTAATCAA
*
10388912 ATTTCATATACATGTATCATAC
1 ATTTCATATACATATATCATAC
10388934 ATTTCATATATCAATATATCAT
1 ATTTCATATA-C-ATATATCAT
10388956 GTAACATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 1 0.05
24 8 0.42
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (22 bp):
ATTTCATATACATATATCATAC
Found at i:10389234 original size:25 final size:25
Alignment explanation
Indices: 10389166--10389238 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 25
10389156 ACAAGTTGTA
10389166 AACGGTAAGCTC-CTCTGAGCTGAAT
1 AACGGTAAGCTCTCTC-GAGCTGAAT
* * *
10389191 AACAGTAAACTCAT-GCGAGCTGAAT
1 AACGGTAAGCTC-TCTCGAGCTGAAT
*
10389216 ATCGGTAAGCTCTCTCGAGCTGA
1 AACGGTAAGCTCTCTCGAGCTGA
10389239 GAATTGGTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (25 bp):
AACGGTAAGCTCTCTCGAGCTGAAT
Found at i:10391881 original size:21 final size:22
Alignment explanation
Indices: 10391855--10391910 Score: 78
Period size: 24 Copynumber: 2.5 Consensus size: 22
10391845 ATAGAGCTAG
10391855 TGTCGCAACAC-GACAACCCTA
1 TGTCGCAACACAGACAACCCTA
*
10391876 TGTCGCAACACCAAGGCAACCCTA
1 TGTCGCAACA-C-AGACAACCCTA
10391900 TGTCGCAACAC
1 TGTCGCAACAC
10391911 CAAGGCCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 10 0.32
22 1 0.03
23 1 0.03
24 19 0.61
ACGTcount: A:0.32, C:0.38, G:0.16, T:0.14
Consensus pattern (22 bp):
TGTCGCAACACAGACAACCCTA
Found at i:10391900 original size:24 final size:24
Alignment explanation
Indices: 10391868--10391916 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
10391858 CGCAACACGA
10391868 CAACCCTATGTCGCAACACCAAGG
1 CAACCCTATGTCGCAACACCAAGG
10391892 CAACCCTATGTCGCAACACCAAGG
1 CAACCCTATGTCGCAACACCAAGG
10391916 C
1 C
10391917 CAAAATTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.39, G:0.16, T:0.12
Consensus pattern (24 bp):
CAACCCTATGTCGCAACACCAAGG
Found at i:10394880 original size:51 final size:48
Alignment explanation
Indices: 10394757--10394996 Score: 212
Period size: 51 Copynumber: 4.8 Consensus size: 48
10394747 GAAAGTGATG
* *
10394757 GTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAT-
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-AT--ATTC
* * * *
10394807 GTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTC
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA--TTC
* * * *
10394857 GATCACTTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATATTAATG
1 G-TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-T--TC
* * * * *
10394909 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAATCGAAAAATTTA
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCG-GATA-TTC
* * *
10394959 ATCACGTGTGTAATACTATGTGAAGGCTACTACGTGTA
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
10394997 TCAAATGATA
Statistics
Matches: 159, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
49 3 0.02
50 74 0.47
51 75 0.47
52 6 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (48 bp):
GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATATTC
Found at i:10394997 original size:101 final size:101
Alignment explanation
Indices: 10394758--10395033 Score: 297
Period size: 101 Copynumber: 2.7 Consensus size: 101
10394748 AAAGTGATGG
* * * *
10394758 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAATGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAATGAAATGTCACATGTGTAGTAC
* * * ** *
10394823 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTACGCGAACCGGAAAAATTCAA
* * * *
10394859 TCACTTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAT-TAATGGTCACGTGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGA-ATGAAAT-GTCACATGTGTAGT
* * *
10394923 ACTATGTGCAGGCTACTACGTGAATC-GAAAAATTTAA
64 ACTATGTGCAGGCTACTACGCGAACCGGAAAAATTCAA
* * * * *
10394960 TCACGTGTGTAATACTATGTGAAGGCTACTACGTGTATCA-AATGATAATAGTTAAATGAGTGGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAATGA-AAT-GTCACATGTGTAGT
10395024 ACTATGTGCA
64 ACTATGTGCA
10395034 AACCACCGAA
Statistics
Matches: 145, Mismatches: 26, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
99 2 0.01
100 1 0.01
101 106 0.73
102 36 0.25
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAATGAAATGTCACATGTGTAGTAC
TATGTGCAGGCTACTACGCGAACCGGAAAAATTCAA
Found at i:10397488 original size:47 final size:48
Alignment explanation
Indices: 10397413--10397503 Score: 123
Period size: 47 Copynumber: 1.9 Consensus size: 48
10397403 CTTTCGTTCA
* * *
10397413 GTGATATGTGGTTTCTGTATAAGACCATATCTGGGA-TATGGCATCGGT
1 GTGATATGTGGCTACTGTATAAGACCATAGCT-GGACTATGGCATCGGT
*
10397461 GTGATATGT-GCTACTGTGTAAGACCATAGCTGGACTATGGCAT
1 GTGATATGTGGCTACTGTATAAGACCATAGCTGGACTATGGCAT
10397504 AGAGAAAACG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
46 3 0.08
47 26 0.68
48 9 0.24
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (48 bp):
GTGATATGTGGCTACTGTATAAGACCATAGCTGGACTATGGCATCGGT
Found at i:10400720 original size:51 final size:49
Alignment explanation
Indices: 10400601--10400839 Score: 239
Period size: 51 Copynumber: 4.8 Consensus size: 49
10400591 AAAGTGATGG
* * *** *
10400601 TCACGTGTGTAGTACTACGTGTAGGCTACTACGTGTACCGGA-ATGAAAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GATA-GTTTGA
* * * * *
10400651 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GATAG-TTTGA
* *
10400702 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATA-TTAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCG-ATAGTT--TGA
* * *
10400753 TCACGTGTGTAGTACTATGTGCGGGCTACTACGTGAACCGGAAAGTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GATAGTTTGA
*
10400803 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
10400840 TCGAATGATA
Statistics
Matches: 156, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
49 2 0.01
50 73 0.47
51 78 0.50
52 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGATAGTTTGA
Found at i:10400869 original size:101 final size:102
Alignment explanation
Indices: 10400601--10400876 Score: 344
Period size: 101 Copynumber: 2.7 Consensus size: 102
10400591 AAAGTGATGG
* * * *
10400601 TCACGTGTGTAGTACTACGTGTAGGCTACTACGTGTACCGGAATGA-AA-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGGTCACATGTGTAGT
* * *
10400664 ACTATGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
65 ACTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* *
10400702 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAT-ATTAATGGTCACGTGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGA-TAATGGTCACATGTGTAGT
* * * *
10400766 ACTATGTGCGGGCTACTACGTGAACCGGAAAG-TTTGA
65 ACTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* * * * *
10400803 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATAGTTAAATGAGTGGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
10400868 CTATGTGCA
66 CTATGTGCA
10400877 AACCACTGAA
Statistics
Matches: 151, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
99 1 0.01
100 4 0.03
101 106 0.70
102 40 0.26
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
Done.