Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 41 of 230
Found at i:11079681 original size:14 final size:15
Alignment explanation
Indices: 11079651--11079683 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
11079641 GTTTTTTATT
*
11079651 TTTATAAAAAATTAA
1 TTTATAAAAAATAAA
11079666 TTTATAAAAAA-AAA
1 TTTATAAAAAATAAA
11079680 TTTA
1 TTTA
11079684 GCATAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TTTATAAAAAATAAA
Found at i:11079751 original size:20 final size:20
Alignment explanation
Indices: 11079726--11079789 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
11079716 TAAATAAGGT
11079726 TTAGGGGTTAGTAGTTAGGG
1 TTAGGGGTTAGTAGTTAGGG
11079746 TTAGGGGTTAG-ATGTTAGAGG
1 TTAGGGGTTAGTA-GTTAG-GG
* * *
11079767 TTAAGAGTTAGTGATTTAGGG
1 TTAGGGGTTAGT-AGTTAGGG
11079788 TT
1 TT
11079790 TAGATATTCG
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
19 1 0.03
20 16 0.43
21 15 0.41
22 4 0.11
23 1 0.03
ACGTcount: A:0.23, C:0.00, G:0.39, T:0.38
Consensus pattern (20 bp):
TTAGGGGTTAGTAGTTAGGG
Found at i:11080389 original size:22 final size:21
Alignment explanation
Indices: 11080359--11080399 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
11080349 TTTTTATTTT
11080359 ATAAAAAATCAATTTATAAATA
1 ATAAAAAAT-AATTTATAAATA
* *
11080381 ATAATAAATATTTTATAAA
1 ATAAAAAATAATTTATAAA
11080400 ATTACTTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (21 bp):
ATAAAAAATAATTTATAAATA
Found at i:11083343 original size:15 final size:17
Alignment explanation
Indices: 11083309--11083346 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
11083299 TAATTTGTTT
11083309 ATTTTTATTATTTTAGA
1 ATTTTTATTATTTTAGA
*
11083326 ATTTTTA-TA-TTTATA
1 ATTTTTATTATTTTAGA
11083341 ATTTTT
1 ATTTTT
11083347 TCCTTATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 11 0.55
16 2 0.10
17 7 0.35
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTTATTATTTTAGA
Found at i:11084058 original size:27 final size:26
Alignment explanation
Indices: 11084028--11084084 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
11084018 AATTTCGAGG
*
11084028 TTTACAATTTT-TAATTTTTATTAATT
1 TTTA-AATTTTCTAACTTTTATTAATT
* *
11084054 ATTTATATTTTCTCACTTTTATTAATT
1 -TTTAAATTTTCTAACTTTTATTAATT
11084081 TTTA
1 TTTA
11084085 TTATTATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (26 bp):
TTTAAATTTTCTAACTTTTATTAATT
Found at i:11084436 original size:43 final size:43
Alignment explanation
Indices: 11084327--11084470 Score: 211
Period size: 43 Copynumber: 3.4 Consensus size: 43
11084317 GTTTGAGATA
* *
11084327 AAAAGCGTCGCTAAAGATCATGGTCTTTAGCGGC-ATTTGTGGG
1 AAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGA-TTGTGGG
*
11084370 -AAAGTGCCGCTAAAGAACATGGTCTTTAGCGGCGATTGTGGG
1 AAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGATTGTGGG
*
11084412 AAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGATTGTGGG
* *
11084455 AGAAGCGCCGCAAAAG
1 AAAAGCGCCGCTAAAG
11084471 TTAGCGACGT
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
42 37 0.40
43 55 0.60
ACGTcount: A:0.28, C:0.18, G:0.32, T:0.22
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGATTGTGGG
Found at i:11084555 original size:22 final size:22
Alignment explanation
Indices: 11084527--11084570 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
11084517 TAGTGGCGCT
* *
11084527 AAAAAGCGCCGTTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
11084549 AAAAAGCGCCGCTAAAAGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
11084571 TTTTGGTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.25, G:0.20, T:0.11
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:11087966 original size:30 final size:30
Alignment explanation
Indices: 11087898--11087966 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
11087888 CATTTCCAAA
* *
11087898 AAAAAAAAAGAAATAGGGAAGGTGAATAAG
1 AAAAAAAAAGAAATAGGGAAGGAGAAGAAG
11087928 AAACAAAAAA-AAATA-GGAAGGAGTAAGAATG
1 AAA-AAAAAAGAAATAGGGAAGGAG-AAGAA-G
11087959 AAAAAAAA
1 AAAAAAAA
11087967 TGATTGGGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 7 0.21
30 17 0.50
31 10 0.29
ACGTcount: A:0.68, C:0.01, G:0.22, T:0.09
Consensus pattern (30 bp):
AAAAAAAAAGAAATAGGGAAGGAGAAGAAG
Found at i:11088981 original size:42 final size:42
Alignment explanation
Indices: 11088935--11089029 Score: 163
Period size: 42 Copynumber: 2.3 Consensus size: 42
11088925 AAGAAAAGCA
* *
11088935 TTCATTGCATTTAGAGGCCTAAGTGTGAAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAAGTGTGAAGGTCCATCTACTT
*
11088977 TTCATTGCATTTAGAGGCCCAGGTGTGAAGGTCCATCTACTT
1 TTCATTGCATTTAGAGGCCCAAGTGTGAAGGTCCATCTACTT
11089019 TTCATTGCATT
1 TTCATTGCATT
11089030 GTATATGAAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAAGTGTGAAGGTCCATCTACTT
Found at i:11089508 original size:18 final size:18
Alignment explanation
Indices: 11089485--11089521 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
11089475 ATTGAAAAAC
11089485 AATATATATATACATGAA
1 AATATATATATACATGAA
11089503 AATATATATATACATGAA
1 AATATATATATACATGAA
11089521 A
1 A
11089522 TGAAAGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.32
Consensus pattern (18 bp):
AATATATATATACATGAA
Found at i:11112601 original size:21 final size:22
Alignment explanation
Indices: 11112566--11112623 Score: 73
Period size: 21 Copynumber: 2.6 Consensus size: 22
11112556 GAGAAGTAGG
11112566 CACCAAAGTGTTAAACAATAGA
1 CACCAAAGTGTTAAACAATAGA
* *
11112588 CACCAAAG-GTTAAATAATAGG
1 CACCAAAGTGTTAAACAATAGA
*
11112609 CACCGAAGTGCTTAA
1 CACCAAAGTG-TTAA
11112624 CAGTAGGCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.58
22 9 0.29
23 4 0.13
ACGTcount: A:0.45, C:0.19, G:0.17, T:0.19
Consensus pattern (22 bp):
CACCAAAGTGTTAAACAATAGA
Found at i:11112630 original size:22 final size:22
Alignment explanation
Indices: 11112539--11112632 Score: 86
Period size: 22 Copynumber: 4.3 Consensus size: 22
11112529 CACAACACCT
* *
11112539 ATAGGCACCGAAGTGTTGAGA-A
1 ATAGGCACCAAAGTGTT-AAACA
*
11112561 GTAGGCACCAAAGTGTTAAACA
1 ATAGGCACCAAAGTGTTAAACA
* *
11112583 ATAGACACCAAAG-GTTAAATA
1 ATAGGCACCAAAGTGTTAAACA
*
11112604 ATAGGCACCGAAGTGCTT-AACA
1 ATAGGCACCAAAGTG-TTAAACA
*
11112626 GTAGGCA
1 ATAGGCA
11112633 TCGCAATGCG
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
21 20 0.34
22 37 0.63
23 2 0.03
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.18
Consensus pattern (22 bp):
ATAGGCACCAAAGTGTTAAACA
Found at i:11116593 original size:2 final size:2
Alignment explanation
Indices: 11116586--11116615 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
11116576 TGTTTGAATA
11116586 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
11116616 AATTGCTACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:11121530 original size:36 final size:36
Alignment explanation
Indices: 11121490--11121567 Score: 147
Period size: 36 Copynumber: 2.2 Consensus size: 36
11121480 GTTCTGGGAC
11121490 TCCATCGCGACCACCACCTTCGAGGAGTTCGGGAAA
1 TCCATCGCGACCACCACCTTCGAGGAGTTCGGGAAA
*
11121526 TCCATCGCGACCACCACCTTCGAGGAGTTCGGGAAC
1 TCCATCGCGACCACCACCTTCGAGGAGTTCGGGAAA
11121562 TCCATC
1 TCCATC
11121568 TCGTTCGTCG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.23, C:0.36, G:0.23, T:0.18
Consensus pattern (36 bp):
TCCATCGCGACCACCACCTTCGAGGAGTTCGGGAAA
Found at i:11129390 original size:28 final size:25
Alignment explanation
Indices: 11129323--11129374 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
11129313 AAAATTGGTA
11129323 AGACATTTTCCATTCTTCTCTAAGC
1 AGACATTTTCCATTCTTCTCTAAGC
11129348 AGACATTTTCCATTC-TCTTCTAAGC
1 AGACATTTTCCATTCTTC-TCTAAGC
11129373 AG
1 AG
11129375 CAGGCATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.25, C:0.27, G:0.10, T:0.38
Consensus pattern (25 bp):
AGACATTTTCCATTCTTCTCTAAGC
Found at i:11131853 original size:14 final size:14
Alignment explanation
Indices: 11131834--11131861 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
11131824 ACAATTTATT
11131834 AATATATATTAATA
1 AATATATATTAATA
11131848 AATATATATTAATA
1 AATATATATTAATA
11131862 TATGTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATATATATTAATA
Found at i:11132006 original size:34 final size:35
Alignment explanation
Indices: 11131948--11132014 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
11131938 CAAACACCAG
11131948 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
11131983 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
11132015 TATTTTACTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:11135530 original size:38 final size:37
Alignment explanation
Indices: 11135460--11135532 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 37
11135450 CTTTCATAAT
*
11135460 TTCACTTTTTCACTTTCAATCACAATTCAATTCAAAA
1 TTCACTTTTCCACTTTCAATCACAATTCAATTCAAAA
11135497 TTCACTTTTCCA-TTTCTAAGTCA-ATATTCAATTCAA
1 TTCACTTTTCCACTTTC-AA-TCACA-ATTCAATTCAA
11135533 TTCCACACCT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 4 0.12
37 14 0.44
38 14 0.44
ACGTcount: A:0.33, C:0.23, G:0.01, T:0.42
Consensus pattern (37 bp):
TTCACTTTTCCACTTTCAATCACAATTCAATTCAAAA
Found at i:11135563 original size:23 final size:22
Alignment explanation
Indices: 11135520--11135563 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
11135510 TTCTAAGTCA
11135520 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
11135543 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
11135564 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:11135672 original size:45 final size:45
Alignment explanation
Indices: 11135608--11135701 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
11135598 AACAGATACT
* *
11135608 CGGTGGATTCAGCATATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTATTAATCAATGATGTC
* *
11135653 CGGTGGAATCAGCACATAGCAACCACCTTATTAATCAATTATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTATTAATCAATGATGTC
11135698 CGGT
1 CGGT
11135702 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTATTAATCAATGATGTC
Found at i:11144935 original size:7 final size:8
Alignment explanation
Indices: 11144910--11144934 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
11144900 GTCAACAAAT
11144910 AATTAAAA
1 AATTAAAA
11144918 AATTAAAA
1 AATTAAAA
11144926 AATTAAAA
1 AATTAAAA
11144934 A
1 A
11144935 TAAGTACACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATTAAAA
Found at i:11146642 original size:16 final size:15
Alignment explanation
Indices: 11146621--11146683 Score: 56
Period size: 16 Copynumber: 4.0 Consensus size: 15
11146611 AAAATTTGAA
11146621 AAAATTTGAGCCAGAG
1 AAAATTTGAGCC-GAG
* *
11146637 AAAATTTAAGTCTGAG
1 AAAATTTGAG-CCGAG
*
11146653 AAAATTCGAGCTCGAG
1 AAAATTTGAGC-CGAG
11146669 AAAATTCT-AGCCGAG
1 AAAATT-TGAGCCGAG
11146684 CTTATTCGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
15 5 0.13
16 32 0.84
17 1 0.03
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.22
Consensus pattern (15 bp):
AAAATTTGAGCCGAG
Found at i:11157544 original size:17 final size:17
Alignment explanation
Indices: 11157511--11157544 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
11157501 TTATTATTAA
* *
11157511 ATATATTTTAATTAAAT
1 ATATAATTTAATAAAAT
11157528 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
11157545 TCTTAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:11157650 original size:17 final size:17
Alignment explanation
Indices: 11157630--11157663 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
11157620 TTATTATTAA
11157630 ATAT-ATTTAATTAAAAT
1 ATATGATTTAA-TAAAAT
11157647 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
11157664 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:11157769 original size:18 final size:17
Alignment explanation
Indices: 11157746--11157782 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
11157736 AATTATTATT
11157746 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
11157762 AAATATATGATTTAATA
1 AAATATATGATTTAATA
11157779 AAAT
1 AAAT
11157783 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:11157889 original size:18 final size:17
Alignment explanation
Indices: 11157866--11157902 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
11157856 AATTATTATT
11157866 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
11157882 AAATATATGATTTAATA
1 AAATATATGATTTAATA
11157899 AAAT
1 AAAT
11157903 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:11158009 original size:18 final size:17
Alignment explanation
Indices: 11157986--11158022 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
11157976 AATTATTATT
11157986 AAATATAT--TTTAATTA
1 AAATATATCATTTAA-TA
11158002 AAATATATCATTTAATA
1 AAATATATCATTTAATA
11158019 AAAT
1 AAAT
11158023 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (17 bp):
AAATATATCATTTAATA
Found at i:11158032 original size:120 final size:120
Alignment explanation
Indices: 11157491--11158023 Score: 941
Period size: 119 Copynumber: 4.5 Consensus size: 120
11157481 TTAATCATAT
* *
11157491 TTTAACATAATTATTATTAAATATATTTTAATT-AAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
11157555 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
*
11157610 TTTAAGCTAATTATTATTAAATATA-TTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
11157674 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAA-ATAA
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
*
11157728 TTTAAGCTAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
11157793 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
11157848 TTTGAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAA
1 TTT-AAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAA
* * *
11157912 TCAATATTTTTATATGAATTTACTAAAATCATAATATATGATAGTATAAAATATAA
65 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
*
11157968 TTTGAA-ATAATTATTATTAAATATATTTTAATTAAAATATATCATTTAATAAAATT
1 TTT-AAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
11158024 TAAAATAATT
Statistics
Matches: 402, Mismatches: 8, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
118 36 0.09
119 192 0.48
120 172 0.43
121 2 0.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
Found at i:11158034 original size:54 final size:53
Alignment explanation
Indices: 11157961--11158122 Score: 142
Period size: 54 Copynumber: 3.1 Consensus size: 53
11157951 GATAGTATAA
* *
11157961 AATATAATTTGAAATAATTATTATTAAATATATTTTAATTAAAATATATCATTT
1 AATAAAATTTAAAATAATTATTATTAAATATATTTTAATTAAAATATAT-ATTT
* * *
11158015 AATAAAATTTAAAATAATTATTAGT-AATAAATTTT-CTT---ATATGA-ATTT
1 AATAAAATTTAAAATAATTATTATTAAATATATTTTAATTAAAATAT-ATATTT
* * * *
11158063 -GTATAATTTAATATAATTATTATTAAATATAATTTAA-TAATAATATATAATTT
1 AATAAAATTTAAAATAATTATTATTAAATATATTTTAATTAA-AATATAT-ATTT
*
11158116 CATAAAA
1 AATAAAA
11158123 ATTTTCTTAT
Statistics
Matches: 84, Mismatches: 14, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
47 20 0.24
48 13 0.15
49 4 0.05
50 1 0.01
51 1 0.01
52 6 0.07
53 13 0.15
54 26 0.31
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (53 bp):
AATAAAATTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATATTT
Found at i:11158125 original size:78 final size:78
Alignment explanation
Indices: 11158043--11158200 Score: 280
Period size: 78 Copynumber: 2.0 Consensus size: 78
11158033 TATTAGTAAT
* * *
11158043 AAATTTTCTTATATGAATTTGTATAATTTAATATAATTATTATTAAATATAATTTAATAATAATA
1 AAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATA
11158108 TATAATTTCATAA
66 TATAATTTCATAA
*
11158121 AAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 AAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATA
11158186 TATAATTTCATAA
66 TATAATTTCATAA
11158199 AA
1 AA
11158201 TTCTTGATAA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.47
Consensus pattern (78 bp):
AAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATA
TATAATTTCATAA
Found at i:11158215 original size:47 final size:47
Alignment explanation
Indices: 11158157--11158307 Score: 172
Period size: 47 Copynumber: 3.3 Consensus size: 47
11158147 TTTAAAATAA
*
11158157 TTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTC
1 TTAATAATAAATATAATTTAATAATGATATATAATTTCATAAAATTC
* * * *
11158204 TTGATAATAAAT-T-TTCTTATATGAAT-TTATATAATTT-A-AAAA--A
1 TTAATAATAAATATAAT-TTA-AT-AATGATATATAATTTCATAAAATTC
*
11158247 TTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTC
1 TTAATAATAAATATAATTTAATAATGATATATAATTTCATAAAATTC
11158294 TTAATAATAAATAT
1 TTAATAATAAATAT
11158308 TCTTATATGA
Statistics
Matches: 83, Mismatches: 11, Indels: 20
0.73 0.10 0.18
Matches are distributed among these distances:
42 3 0.04
43 22 0.27
44 5 0.06
45 10 0.12
46 5 0.06
47 35 0.42
48 3 0.04
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (47 bp):
TTAATAATAAATATAATTTAATAATGATATATAATTTCATAAAATTC
Found at i:11158277 original size:90 final size:91
Alignment explanation
Indices: 11158117--11158322 Score: 380
Period size: 90 Copynumber: 2.3 Consensus size: 91
11158107 ATATAATTTC
11158117 ATAA-AAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAA
1 ATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAA
*
11158181 TGATATATAATTTCATAAAATTCTTG
66 TGATATATAATTTCATAAAATTCTTA
11158207 ATAATAAATTTTCTTATATGAATTTATATAATTTAAAA-AATTAATATTAAATATAATTTAATAA
1 ATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAA
11158271 TGATATATAATTTCATAAAATTCTTA
66 TGATATATAATTTCATAAAATTCTTA
*
11158297 ATAATAAATATTCTTATATGAATTTA
1 ATAATAAATTTTCTTATATGAATTTA
11158323 CTAAAATCAT
Statistics
Matches: 113, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
90 80 0.71
91 33 0.29
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (91 bp):
ATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAA
TGATATATAATTTCATAAAATTCTTA
Found at i:11162366 original size:23 final size:24
Alignment explanation
Indices: 11162306--11162368 Score: 78
Period size: 23 Copynumber: 2.7 Consensus size: 24
11162296 TCTACTCACT
11162306 AACAAATCAAGAACAATTTCCAGC
1 AACAAATCAAGAACAATTTCCAGC
* *
11162330 AGAC-TATCAA-AACAATTTCTAG-
1 A-ACAAATCAAGAACAATTTCCAGC
11162352 AACAAATCAAGAACAAT
1 AACAAATCAAGAACAAT
11162369 ATCAAAACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
21 2 0.06
22 6 0.18
23 17 0.52
24 6 0.18
25 2 0.06
ACGTcount: A:0.52, C:0.21, G:0.08, T:0.19
Consensus pattern (24 bp):
AACAAATCAAGAACAATTTCCAGC
Found at i:11162377 original size:22 final size:22
Alignment explanation
Indices: 11162335--11162380 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
11162325 CCAGCAGACT
* *
11162335 ATCAAAACAATTTCTAGAACAA
1 ATCAAAACAATATCTAAAACAA
11162357 ATCAAGAACAATATC-AAAACAA
1 ATCAA-AACAATATCTAAAACAA
11162379 AT
1 AT
11162381 GCAACAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.59, C:0.17, G:0.04, T:0.20
Consensus pattern (22 bp):
ATCAAAACAATATCTAAAACAA
Found at i:11162395 original size:107 final size:107
Alignment explanation
Indices: 11162278--11162507 Score: 442
Period size: 107 Copynumber: 2.1 Consensus size: 107
11162268 ACTATACTTG
11162278 CAATTTCCAGTTTCATCTTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACTATCAAAAC
1 CAATTTCCAGTTTCATCTTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACTATCAAAAC
*
11162343 AATTTCTAGAACAAATCAAGAACAATATCAAAACAAATGCAA
66 AATTTCCAGAACAAATCAAGAACAATATCAAAACAAATGCAA
*
11162385 CAATTTCCAGTTTCATCTTCTACTCACTAACAAATCAATAACAATTTCCAGCAGACTATCAAAAC
1 CAATTTCCAGTTTCATCTTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACTATCAAAAC
11162450 AATTTCCAGAACAAATCAAGAACAATATCAAAACAAATGCAA
66 AATTTCCAGAACAAATCAAGAACAATATCAAAACAAATGCAA
11162492 CAATTTCCAGTTTCAT
1 CAATTTCCAGTTTCAT
11162508 TGAAAACAAC
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 121 1.00
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.26
Consensus pattern (107 bp):
CAATTTCCAGTTTCATCTTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACTATCAAAAC
AATTTCCAGAACAAATCAAGAACAATATCAAAACAAATGCAA
Found at i:11162473 original size:23 final size:23
Alignment explanation
Indices: 11162413--11162475 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
11162403 TCTACTCACT
11162413 AACAAATCAATAACAATTTCCAGC
1 AACAAATCAA-AACAATTTCCAGC
*
11162437 AGAC-TATCAAAACAATTTCCAG-
1 A-ACAAATCAAAACAATTTCCAGC
11162459 AACAAATCAAGAACAAT
1 AACAAATCAA-AACAAT
11162476 ATCAAAACAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 2 0.06
22 6 0.18
23 18 0.53
24 6 0.18
25 2 0.06
ACGTcount: A:0.52, C:0.22, G:0.06, T:0.19
Consensus pattern (23 bp):
AACAAATCAAAACAATTTCCAGC
Found at i:11162484 original size:22 final size:22
Alignment explanation
Indices: 11162442--11162487 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
11162432 CCAGCAGACT
* *
11162442 ATCAAAACAATTTCCAGAACAA
1 ATCAAAACAATATCCAAAACAA
11162464 ATCAAGAACAATAT-CAAAACAA
1 ATCAA-AACAATATCCAAAACAA
11162486 AT
1 AT
11162488 GCAACAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.59, C:0.20, G:0.04, T:0.17
Consensus pattern (22 bp):
ATCAAAACAATATCCAAAACAA
Found at i:11163908 original size:34 final size:33
Alignment explanation
Indices: 11163867--11163935 Score: 84
Period size: 34 Copynumber: 2.1 Consensus size: 33
11163857 ATAAACATAA
**
11163867 AAAAATATACATGCATGTTTAAATCATGAAATAT
1 AAAAATATACATGCATGTGAAAATCATGAAA-AT
* * *
11163901 AAAAATATATATGTATGTGAAAATTATGAAAAT
1 AAAAATATACATGCATGTGAAAATCATGAAAAT
11163934 AA
1 AA
11163936 GATAAAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
33 4 0.13
34 26 0.87
ACGTcount: A:0.54, C:0.04, G:0.10, T:0.32
Consensus pattern (33 bp):
AAAAATATACATGCATGTGAAAATCATGAAAAT
Found at i:11164070 original size:24 final size:24
Alignment explanation
Indices: 11164030--11164080 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
11164020 ATGTAGAAAT
*
11164030 AATAATATATAATATAACAATAAC
1 AATAATATATAAAATAACAATAAC
*
11164054 AATAATCATA-AAAATAATAATAAC
1 AATAAT-ATATAAAATAACAATAAC
11164078 AAT
1 AAT
11164081 GTTAACAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (24 bp):
AATAATATATAAAATAACAATAAC
Found at i:11164840 original size:15 final size:14
Alignment explanation
Indices: 11164812--11164853 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
11164802 ATTTTAAGAG
11164812 AAAAAATAAA-AAT
1 AAAAAATAAATAAT
11164825 AAAAAACTAAATAAT
1 AAAAAA-TAAATAAT
*
11164840 AAATAAGTAAATAA
1 AAA-AAATAAATAA
11164854 AATCAAACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 6 0.24
14 4 0.16
15 13 0.52
16 2 0.08
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.19
Consensus pattern (14 bp):
AAAAAATAAATAAT
Found at i:11165218 original size:14 final size:15
Alignment explanation
Indices: 11165191--11165228 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
11165181 TCTTTATTTG
11165191 TTTTGGGTCACTTGTA
1 TTTTGGG-CACTTGTA
11165207 TTTTGGGC-CTTGTA
1 TTTTGGGCACTTGTA
*
11165221 TTCTGGGC
1 TTTTGGGC
11165229 TAGCTCGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.62
15 1 0.05
16 7 0.33
ACGTcount: A:0.08, C:0.16, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTTGGGCACTTGTA
Found at i:11165774 original size:44 final size:44
Alignment explanation
Indices: 11165726--11165825 Score: 155
Period size: 44 Copynumber: 2.3 Consensus size: 44
11165716 ACTGTAACTT
* *
11165726 CAGGGAGGTAAGATTCTCAATCTTCAACCTATTCCACTACTGAC
1 CAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTACTGAC
* *
11165770 CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGAC
1 CAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTACTGAC
*
11165814 CAGAGAGATAAG
1 CAGGGAGATAAG
11165826 GCTGGGGACT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (44 bp):
CAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTACTGAC
Found at i:11166044 original size:44 final size:44
Alignment explanation
Indices: 11165989--11166132 Score: 121
Period size: 44 Copynumber: 3.3 Consensus size: 44
11165979 GCTGTCGGTG
*
11165989 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGTAACC
* * * * ** * ***
11166033 CAGGGAGGCAAGGA--TGGTGTCTTCGATCTGCTTCGCTGTCAGTG
1 CAGGAAGGCAA-GATCTGCTATTTTTAACCTGCTTCGCTGT-AACC
* * *
11166077 CAGGAAAGCAAGATCTGTTATTTTTAACCTGCTTCGCTGCAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGTAACC
*
11166121 CAGGGAGGCAAG
1 CAGGAAGGCAAG
11166133 GCTAGTGTCT
Statistics
Matches: 71, Mismatches: 25, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
43 20 0.28
44 31 0.44
45 20 0.28
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (44 bp):
CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGTAACC
Found at i:11166070 original size:43 final size:43
Alignment explanation
Indices: 11166017--11166154 Score: 107
Period size: 43 Copynumber: 3.2 Consensus size: 43
11166007 TATTTTTAAC
*
11166017 CTGCTCCGCTGTAACCCAGGGAGGCAAGGATGGTGTCTTCGAT
1 CTGCTTCGCTGTAACCCAGGGAGGCAAGGATGGTGTCTTCGAT
*** * * * * * ** *
11166060 CTGCTTCGCTGTCAGTGCAGGAAAGCAA-GATCTGTTATTTTTAAC
1 CTGCTTCGCTGT-AACCCAGGGAGGCAAGGA--TGGTGTCTTCGAT
* * *
11166105 CTGCTTCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGAT
1 CTGCTTCGCTGTAACCCAGGGAGGCAAGGATGGTGTCTTCGAT
11166148 CTGCTTC
1 CTGCTTC
11166155 TCTCTCGGTG
Statistics
Matches: 65, Mismatches: 26, Indels: 8
0.66 0.26 0.08
Matches are distributed among these distances:
43 26 0.40
44 20 0.31
45 19 0.29
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.28
Consensus pattern (43 bp):
CTGCTTCGCTGTAACCCAGGGAGGCAAGGATGGTGTCTTCGAT
Found at i:11166079 original size:88 final size:88
Alignment explanation
Indices: 11165967--11166840 Score: 1111
Period size: 88 Copynumber: 9.9 Consensus size: 88
11165957 GCTGTGGTCA
* * * * * * **
11165967 TCGATCTGTTTTGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAAC
1 TCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
* *
11166032 CCAGGGAGGCAAGGATGGTGTCT
66 CCAGGGAGGCAAGGCTGGTATCT
* * * * * * *
11166055 TCGATCTGCTTCGCTGTC-AGTGCAGGAAAGCAAGATCTGTTATTTTTAACCTGCTTCGCTGCAA
1 TCGATCTGCTTCGCTGTCGA-TGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAA
* *
11166119 CCCAGGGAGGCAAGGCTAGTGTCT
65 CCCAGGGAGGCAAGGCTGGTATCT
* * * * *
11166143 TCGATCTGCTTCTCTCTCGGTGCAGGAAGGCAAAATCTGCTATCTTGAACCTGCTCCACTACAAC
1 TCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
*
11166208 CCAGGGAGGCAAGGCTGATATCT
66 CCAGGGAGGCAAGGCTGGTATCT
* * * * * *
11166231 TTGATCTACTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTACAAC
1 TCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
*
11166296 CCAGGGAAGCAAGGCTGGTATCT
66 CCAGGGAGGCAAGGCTGGTATCT
* * * * *
11166319 TCGATCTGCTTTGCTATCGATGCAGGAAGGCAAGATCTCCTATCTTCAACCTGCTCTACTACGAC
1 TCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
* *
11166384 CCAGTGAGGCAAGGTTGGTATCT
66 CCAGGGAGGCAAGGCTGGTATCT
* * * * * * *
11166407 TCGGTTTGCTTCGCTGTCGATACAGTAAGGCAAAAATCTGTTGTCTTCAACCTGCTCCACTACAA
1 TCGATCTGCTTCGCTGTCGATGCAGGAAGGC-AAGATCTGCTATCTTCAACCTGCTCCACTACAA
*
11166472 TCCAGGGAGGCAAGGCTGGTATCT
65 CCCAGGGAGGCAAGGCTGGTATCT
* * * * *
11166496 TCGATCTGCTTCTCTGTTGATGTAGAAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGAC
1 TCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
* *
11166561 CCATGGAGGCAAGGTTGGTATCT
66 CCAGGGAGGCAAGGCTGGTATCT
* * * * * * * * *
11166584 TCGGTTTGGTTTGCTGTCGATGCAGTAAGGCAAAATCTACTGTCTTCAACTTGCTCCACTACAAC
1 TCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
11166649 CCAGGGAGGCAAGGCTGGTATCT
66 CCAGGGAGGCAAGGCTGGTATCT
*
11166672 TCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGAC
1 TCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
*
11166737 CCAAGGAGGCAAGGCTGGTATCT
66 CCAGGGAGGCAAGGCTGGTATCT
* *
11166760 TCGATCTGCTTCGCTTTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGAC
1 TCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
*
11166825 CCAGGGAGACAAGGCT
66 CCAGGGAGGCAAGGCT
11166841 TTGTGATTTC
Statistics
Matches: 679, Mismatches: 104, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
88 607 0.89
89 72 0.11
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
CCAGGGAGGCAAGGCTGGTATCT
Found at i:11166218 original size:44 final size:44
Alignment explanation
Indices: 11166165--11166300 Score: 114
Period size: 44 Copynumber: 3.1 Consensus size: 44
11166155 TCTCTCGGTG
11166165 CAGGAAGGCAAAATCTGCTATCTTGAACCTGCTCCACTACAACC
1 CAGGAAGGCAAAATCTGCTATCTTGAACCTGCTCCACTACAACC
* ** * * * * * ****
11166209 CAGGGAGGC-AAGGCTGATATCTTTG-ATCTACTTCACTGTCGGTA
1 CAGGAAGGCAAAATCTGCTATC-TTGAACCTGCTCCACT-ACAACC
* *
11166253 CAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTACAACC
1 CAGGAAGGCAAAATCTGCTATCTTGAACCTGCTCCACTACAACC
11166297 CAGG
1 CAGG
11166301 GAAGCAAGGC
Statistics
Matches: 62, Mismatches: 26, Indels: 8
0.65 0.27 0.08
Matches are distributed among these distances:
43 18 0.29
44 27 0.44
45 17 0.27
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (44 bp):
CAGGAAGGCAAAATCTGCTATCTTGAACCTGCTCCACTACAACC
Found at i:11166231 original size:43 final size:43
Alignment explanation
Indices: 11166183--11166319 Score: 114
Period size: 44 Copynumber: 3.1 Consensus size: 43
11166173 CAAAATCTGC
11166183 TATCTTGAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGA
1 TATCTTGAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGA
* * * * **** * * *
11166226 TATCTTTG-ATCTACTTCACTGTCGGTACAGGAAGGCAAGATCTGC
1 TATC-TTGAACCTGCTCCACT-ACAACCCAGGGAGGCAAG-GCTGA
* * *
11166271 TATCTTTAACCTGCTCCACTACAACCCAGGGAAGCAAGGCTGG
1 TATCTTGAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGA
11166314 TATCTT
1 TATCTT
11166320 CGATCTGCTT
Statistics
Matches: 66, Mismatches: 24, Indels: 8
0.67 0.24 0.08
Matches are distributed among these distances:
43 22 0.33
44 28 0.42
45 16 0.24
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (43 bp):
TATCTTGAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGA
Found at i:11166328 original size:43 final size:43
Alignment explanation
Indices: 11166193--11166328 Score: 112
Period size: 43 Copynumber: 3.1 Consensus size: 43
11166183 TATCTTGAAC
*
11166193 CTGCTCCACTACAACCCAGGGAGGCAAGGCTGATATCTTTGAT
1 CTGCTCCACTACAACCCAGGGAAGCAAGGCTGATATCTTTGAT
* * * **** * * * *
11166236 CTACTTCACTGTCGGTACA-GGAAGGCAAGATCTGCTATCTTTAAC
1 CTGCTCCACT-ACAACCCAGGGAA-GCAAG-GCTGATATCTTTGAT
* *
11166281 CTGCTCCACTACAACCCAGGGAAGCAAGGCTGGTATCTTCGAT
1 CTGCTCCACTACAACCCAGGGAAGCAAGGCTGATATCTTTGAT
11166324 CTGCT
1 CTGCT
11166329 TTGCTATCGA
Statistics
Matches: 65, Mismatches: 24, Indels: 8
0.67 0.25 0.08
Matches are distributed among these distances:
43 26 0.40
44 16 0.25
45 23 0.35
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (43 bp):
CTGCTCCACTACAACCCAGGGAAGCAAGGCTGATATCTTTGAT
Found at i:11172600 original size:42 final size:42
Alignment explanation
Indices: 11172539--11172724 Score: 261
Period size: 42 Copynumber: 4.5 Consensus size: 42
11172529 CAGTGCCTAT
* * * *
11172539 CAGGTTTATTGCCAGTGAAACAATATT-AGACTTTATGTCTAG
1 CAGGCTTAATGCCGGTGAAACAAT-TTCAGACTTTACGTCTAG
*
11172581 CAGGCTTAATGCCGGTGAAATAATTTCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
*
11172623 CAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
* *
11172665 CAGGCTTAATGCCGGTGAAAC-ATTTCAGACTATATGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
11172706 CAGGC-TAAGTGCCGGTGAA
1 CAGGCTTAA-TGCCGGTGAA
11172725 TCTGTTTAAG
Statistics
Matches: 132, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
40 3 0.02
41 34 0.26
42 95 0.72
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (42 bp):
CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
Found at i:11172748 original size:34 final size:34
Alignment explanation
Indices: 11172700--11172767 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
11172690 CAGACTATAT
* *
11172700 GTCTAGCAGGCTAAGTGCCGGTGAATCTGTTTAA
1 GTCTAGCAGACTAAGTGCCAGTGAATCTGTTTAA
11172734 GTCTAGCAGACTAAGTGCCAGTGAATCTGTTTAA
1 GTCTAGCAGACTAAGTGCCAGTGAATCTGTTTAA
11172768 AGAATGTGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (34 bp):
GTCTAGCAGACTAAGTGCCAGTGAATCTGTTTAA
Found at i:11176181 original size:36 final size:34
Alignment explanation
Indices: 11176100--11176182 Score: 85
Period size: 36 Copynumber: 2.4 Consensus size: 34
11176090 GAAAATGAAT
* *
11176100 AAAATTATAAACATAAAAAAATATACATGCATGTT
1 AAAATTATGAA-ATAAAAAAATATACATGCATGTG
* * * *
11176135 TAAATCATGAAATAGAAAAATATATATATGTATGTG
1 AAAATTATGAAATA-AAAAA-ATATACATGCATGTG
11176171 AAAATTATGAAA
1 AAAATTATGAAA
11176183 ATAAGATAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
34 3 0.08
35 13 0.34
36 22 0.58
ACGTcount: A:0.55, C:0.05, G:0.10, T:0.30
Consensus pattern (34 bp):
AAAATTATGAAATAAAAAAATATACATGCATGTG
Found at i:11176287 original size:3 final size:3
Alignment explanation
Indices: 11176279--11176330 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
11176269 ATATGTAGAT
* * * *
11176279 ATA ATA ATA ATA TATA AT- ATA ACA ATA AAA ATA ATC ATA AAA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
11176324 ATA ATA A
1 ATA ATA A
11176331 CAATGTCAAC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:11176300 original size:18 final size:17
Alignment explanation
Indices: 11176277--11176330 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
11176267 ATATATGTAG
*
11176277 ATATAATAATAATATATA
1 ATATAAAAATAATA-ATA
* *
11176295 ATATAACAATAAAAATA
1 ATATAAAAATAATAATA
11176312 ATCATAAAAATAATAATA
1 AT-ATAAAAATAATAATA
11176330 A
1 A
11176331 CAATGTCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 5 0.16
18 26 0.84
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (17 bp):
ATATAAAAATAATAATA
Found at i:11178540 original size:21 final size:22
Alignment explanation
Indices: 11178498--11178540 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
11178488 AAGTGAACAG
11178498 TGCAATAATCGATGAAGAAGAACC
1 TGCAATAATCGAT--AGAAGAACC
11178522 TGCAATAATCGAT-GAAGAA
1 TGCAATAATCGATAGAAGAA
11178541 AAGGAAGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
24 13 0.68
ACGTcount: A:0.47, C:0.14, G:0.21, T:0.19
Consensus pattern (22 bp):
TGCAATAATCGATAGAAGAACC
Found at i:11179538 original size:41 final size:41
Alignment explanation
Indices: 11179481--11179562 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
11179471 TATTATGTTG
*
11179481 GACAAATTTTCTAAAAATGTATGCAGTTCTTTAAAAGATTA
1 GACAAATTTTCTAAAAATATATGCAGTTCTTTAAAAGATTA
*
11179522 GACAAATTTTCTAAAAATATATGTAGTTCTTTAAAAGATTA
1 GACAAATTTTCTAAAAATATATGCAGTTCTTTAAAAGATTA
11179563 ATTTCGTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.38
Consensus pattern (41 bp):
GACAAATTTTCTAAAAATATATGCAGTTCTTTAAAAGATTA
Found at i:11179774 original size:22 final size:21
Alignment explanation
Indices: 11179741--11179782 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
11179731 AAAATAAGTT
11179741 TTAATTTCTTATGATATAAAAA
1 TTAATTTCTTAT-ATATAAAAA
*
11179763 TTAATATT-TTATATTTAAAA
1 TTAAT-TTCTTATATATAAAA
11179783 TAGTGAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 7 0.39
22 9 0.50
23 2 0.11
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
TTAATTTCTTATATATAAAAA
Found at i:11184845 original size:20 final size:20
Alignment explanation
Indices: 11184820--11184858 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
11184810 TGGAGCAGGA
11184820 ATATCAATACCTTAAGAAAT
1 ATATCAATACCTTAAGAAAT
11184840 ATATCAATACCTTAAGAAA
1 ATATCAATACCTTAAGAAA
11184859 AGTATTAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.15, G:0.05, T:0.28
Consensus pattern (20 bp):
ATATCAATACCTTAAGAAAT
Found at i:11188900 original size:23 final size:23
Alignment explanation
Indices: 11188868--11188911 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
11188858 ACTGCCATTT
11188868 TCTAAATAAAACAATAATAAATA
1 TCTAAATAAAACAATAATAAATA
* * *
11188891 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAACAATAATAAA
11188912 ATAATATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (23 bp):
TCTAAATAAAACAATAATAAATA
Found at i:11189281 original size:3 final size:3
Alignment explanation
Indices: 11189273--11189302 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
11189263 CTGCTTCTTA
11189273 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
11189303 TTCAATACTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:11190570 original size:16 final size:16
Alignment explanation
Indices: 11190549--11190583 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
11190539 CTTCTCCAAA
*
11190549 TTTTTTGGGTTCTTTT
1 TTTTTTGGGTTATTTT
*
11190565 TTTTTTGGTTTATTTT
1 TTTTTTGGGTTATTTT
11190581 TTT
1 TTT
11190584 CAATCTAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.03, G:0.14, T:0.80
Consensus pattern (16 bp):
TTTTTTGGGTTATTTT
Found at i:11194567 original size:2 final size:2
Alignment explanation
Indices: 11194562--11194606 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
11194552 TATATATATA
11194562 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
11194604 TG T
1 TG T
11194607 ATTATATATG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:11195812 original size:124 final size:123
Alignment explanation
Indices: 11195600--11195896 Score: 413
Period size: 124 Copynumber: 2.4 Consensus size: 123
11195590 AAGTGTTTGA
* * * * **
11195600 AAAACTACGATAGAATCTTTTAGTACAATCATTCAACAAAT--A-CAAAAAAAGGGGTAATGTGT
1 AAAACTAAGATAGAATCTTTTGGTACAATCATTCAACAAATAAAGGAAAAAAAAGGGTAAAATGT
* *
11195662 AAGTAAAGGACTAAAGTAAATAGTGTAAATTTTGTTTTGAAGTGTTTGAAAAAATTGG
66 AAGTAAAGGACTAAAGTAAATAGTGTAAATTTTATTTTGAAGTATTTGAAAAAATTGG
** * *
11195720 AAAACTGTGATAGAATCTTTTGGTACAATTATTCAATAAATAAAGGGAAAAAAAAGGGTAAAATG
1 AAAACTAAGATAGAATCTTTTGGTACAATCATTCAACAAATAAA-GGAAAAAAAAGGGTAAAATG
* *
11195785 TAAGTAAAGGGCTAAAGTAAACT-GTGTAAATTTTATTTTGAAGTATTTGATAAAATTGG
65 TAAGTAAAGGACTAAAGTAAA-TAGTGTAAATTTTATTTTGAAGTATTTGAAAAAATTGG
11195844 AAAACTAAGATAGAATCTTTTGGTACAATCATTCAACAAATAAAGAGAAAAAA
1 AAAACTAAGATAGAATCTTTTGGTACAATCATTCAACAAATAAAG-GAAAAAA
11195897 TTGAGTATGA
Statistics
Matches: 154, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
120 36 0.23
122 1 0.01
123 1 0.01
124 115 0.75
125 1 0.01
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.29
Consensus pattern (123 bp):
AAAACTAAGATAGAATCTTTTGGTACAATCATTCAACAAATAAAGGAAAAAAAAGGGTAAAATGT
AAGTAAAGGACTAAAGTAAATAGTGTAAATTTTATTTTGAAGTATTTGAAAAAATTGG
Found at i:11200562 original size:49 final size:49
Alignment explanation
Indices: 11200418--11200562 Score: 148
Period size: 49 Copynumber: 2.9 Consensus size: 49
11200408 TTCGTCACGT
* * * * * * *
11200418 GTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCAT
1 GTGTAGTACTATGTGCAGGCTACTATGTGTACGGGTATCATTGATC-CAC
* * * *
11200468 GTGTAGTACTATGTGCAGGCTACTATGCGTACTGGATAGCTTTGAT-CAC
1 GTGTAGTACTATGTGCAGGCTACTATGTGTAC-GGGTATCATTGATCCAC
*
11200517 GTGTAGTACTATGTGCAGGCTACTATGTGAATCGGGTATCATTGAT
1 GTGTAGTACTATGTGCAGGCTACTATGTGTA-CGGGTATCATTGAT
11200563 TATAAGGTGG
Statistics
Matches: 77, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
49 41 0.53
50 31 0.40
51 5 0.06
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (49 bp):
GTGTAGTACTATGTGCAGGCTACTATGTGTACGGGTATCATTGATCCAC
Found at i:11200745 original size:10 final size:10
Alignment explanation
Indices: 11200730--11200766 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
11200720 AATATAGTGG
11200730 TGAATTGAAA
1 TGAATTGAAA
*
11200740 TGAATTGTATA
1 TGAATTG-AAA
11200751 TGAATTGAAA
1 TGAATTGAAA
11200761 TGAATT
1 TGAATT
11200767 ATTGGAATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (10 bp):
TGAATTGAAA
Found at i:11205231 original size:19 final size:19
Alignment explanation
Indices: 11205207--11205260 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
11205197 AATCATATTT
11205207 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
11205226 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
11205245 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
11205261 CTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:11205256 original size:38 final size:40
Alignment explanation
Indices: 11205184--11205260 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
11205174 AAATTAAATC
11205184 TCTAAGATTACAAAATCATATTTTCTAAGATTGCATATCATA
1 TCTAAGATTACAAAATCATA--TTCTAAGATTGCATATCATA
*
11205226 TCTAAGATTAC-ATATCATA-TCTAAGATTGCATATC
1 TCTAAGATTACAAAATCATATTCTAAGATTGCATATC
11205261 CTTGAAGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 16 0.47
41 7 0.21
42 11 0.32
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.38
Consensus pattern (40 bp):
TCTAAGATTACAAAATCATATTCTAAGATTGCATATCATA
Found at i:11206552 original size:11 final size:11
Alignment explanation
Indices: 11206536--11206573 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
11206526 GGCCCAGCCC
11206536 ATATTAAATAT
1 ATATTAAATAT
11206547 ATATTAAATAT
1 ATATTAAATAT
*
11206558 ATATAAAATAT
1 ATATTAAATAT
11206569 ATATT
1 ATATT
11206574 TGATTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
ATATTAAATAT
Found at i:11210791 original size:8 final size:9
Alignment explanation
Indices: 11210767--11210794 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
11210757 TGGTTGAAGA
11210767 AAGAAAAAT
1 AAGAAAAAT
11210776 AAGAAAAAT
1 AAGAAAAAT
11210785 AAGAAAAAT
1 AAGAAAAAT
11210794 A
1 A
11210795 TTATAGCTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AAGAAAAAT
Found at i:11211827 original size:13 final size:13
Alignment explanation
Indices: 11211802--11211836 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
11211792 TTCAGTCCTT
11211802 TACAGATACAGATA
1 TACAGA-ACAGATA
*
11211816 TGCAGAACAGATA
1 TACAGAACAGATA
11211829 TACAGAAC
1 TACAGAAC
11211837 CCTACCCCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (13 bp):
TACAGAACAGATA
Found at i:11212307 original size:17 final size:18
Alignment explanation
Indices: 11212276--11212311 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
11212266 GTGGCATGCT
11212276 CGTGTAGGCCCACACGCC
1 CGTGTAGGCCCACACGCC
*
11212294 CGTGT-GGCCTACACGCC
1 CGTGTAGGCCCACACGCC
11212311 C
1 C
11212312 AATATGTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.14, C:0.44, G:0.28, T:0.14
Consensus pattern (18 bp):
CGTGTAGGCCCACACGCC
Found at i:11214459 original size:21 final size:21
Alignment explanation
Indices: 11214435--11214482 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
11214425 TCCATAAGGA
*
11214435 CGTGTGCCTTAGACATATGGC
1 CGTGTGCCTTAGACACATGGC
* * *
11214456 CGTGTCCCTTAGCCACATGGG
1 CGTGTGCCTTAGACACATGGC
11214477 CGTGTG
1 CGTGTG
11214483 AGATTTCCAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.15, C:0.27, G:0.31, T:0.27
Consensus pattern (21 bp):
CGTGTGCCTTAGACACATGGC
Found at i:11215053 original size:21 final size:21
Alignment explanation
Indices: 11215027--11215079 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
11215017 TTTCAATTTC
*
11215027 CACATGGGCGTGTGCCTTAGA
1 CACATGGGCGTGTCCCTTAGA
** *
11215048 CACATGATCGTGTCCCTTAGC
1 CACATGGGCGTGTCCCTTAGA
11215069 CACATGGGCGT
1 CACATGGGCGT
11215080 CTGAGATTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (21 bp):
CACATGGGCGTGTCCCTTAGA
Found at i:11221889 original size:21 final size:21
Alignment explanation
Indices: 11221863--11221914 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
11221853 AGTGATCGTG
11221863 GTGGTGAATATGTTGAACCAT
1 GTGGTGAATATGTTGAACCAT
11221884 GTGGTGAATATGTTGAACCAT
1 GTGGTGAATATGTTGAACCAT
*
11221905 TTGGTGAATA
1 GTGGTGAATA
11221915 CTGTGCACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.35
Consensus pattern (21 bp):
GTGGTGAATATGTTGAACCAT
Found at i:11236932 original size:23 final size:24
Alignment explanation
Indices: 11236889--11236933 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
11236879 ATAAAATAAA
*
11236889 AAATATTAAAATATTTTATTATCT
1 AAATATTAAAATATTTGATTATCT
11236913 AAAT-TTAAAAT-TTATGATTAT
1 AAATATTAAAATATT-TGATTAT
11236934 TATTATCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 13 0.68
24 4 0.21
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
AAATATTAAAATATTTGATTATCT
Found at i:11238609 original size:22 final size:23
Alignment explanation
Indices: 11238572--11238614 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
11238562 AGCATATCAT
*
11238572 TATATTTTAAAAATTAAAATATA
1 TATATCTTAAAAATTAAAATATA
11238595 TATATCTT-AAAATTAAAATA
1 TATATCTTAAAAATTAAAATA
11238615 CTATTACTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
TATATCTTAAAAATTAAAATATA
Found at i:11247094 original size:229 final size:226
Alignment explanation
Indices: 11246696--11247149 Score: 863
Period size: 229 Copynumber: 2.0 Consensus size: 226
11246686 AATAACCAGG
11246696 GTGTTACATTCATTGTACTTATCATGGTTTGAATCTTACTCTTAGTGATATGTCACATTCTTGCA
1 GTGTTACATTCATTGTACTTATCATGGTTTGAATCTTACTCTTAGTGATATGTCACATTCTTGCA
11246761 TTAGAGCTATTTATTTTTTTTTTGGAATTTTTTCAAAGCATATATTCATTATTTTCGGGTTCTAC
66 TTAGAGCTATTTATTTTTTTTTTGGAATTTTTTCAAAGCATATATTCATTATTTTCGGGTTCTAC
*
11246826 AAAAAGATGGAAAATTTTGCTCAACAATGTCATTGAATTAGCTGTGAAATTTTTATCTAATACTC
131 AAAAAGATGGAAAATTTTGCTCAACAATGTCATTGAATTAACTGTGAAATTTTTATCTAATACTC
11246891 GTTGGGCGAGTCAAATTAAAAGTGTTAAAGA
196 GTTGGGCGAGTCAAATTAAAAGTGTTAAAGA
11246922 GTGTTACATTCATTGTACTTATCATGGTTTGAATCTTACTCTTAGTGATATGTCACATTCTTGCA
1 GTGTTACATTCATTGTACTTATCATGGTTTGAATCTTACTCTTAGTGATATGTCACATTCTTGCA
*
11246987 TTAGAGCTATTTCTTTTTTTTTTTTTGGAATTTTTTCAAAGCATATATTCATTATTTTCGGGTTC
66 TTAGAGCTA--T-TTATTTTTTTTTTGGAATTTTTTCAAAGCATATATTCATTATTTTCGGGTTC
11247052 TACAAAAAGATGGAAAATTTTGCTCAACAATGTCATTGAATTAACTGTGAAATTTTTATCTAATA
128 TACAAAAAGATGGAAAATTTTGCTCAACAATGTCATTGAATTAACTGTGAAATTTTTATCTAATA
11247117 CTCGTTGGGCGAGTCAAATTAAAAGTGTTAAAG
193 CTCGTTGGGCGAGTCAAATTAAAAGTGTTAAAG
11247150 CTATTAGATT
Statistics
Matches: 223, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
226 74 0.33
228 1 0.00
229 148 0.66
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.43
Consensus pattern (226 bp):
GTGTTACATTCATTGTACTTATCATGGTTTGAATCTTACTCTTAGTGATATGTCACATTCTTGCA
TTAGAGCTATTTATTTTTTTTTTGGAATTTTTTCAAAGCATATATTCATTATTTTCGGGTTCTAC
AAAAAGATGGAAAATTTTGCTCAACAATGTCATTGAATTAACTGTGAAATTTTTATCTAATACTC
GTTGGGCGAGTCAAATTAAAAGTGTTAAAGA
Found at i:11251407 original size:9 final size:8
Alignment explanation
Indices: 11251389--11251477 Score: 56
Period size: 8 Copynumber: 10.8 Consensus size: 8
11251379 TTTTAGAAAC
11251389 TTTTATAT
1 TTTTATAT
11251397 TTTTCATAT
1 TTTT-ATAT
*
11251406 TTTTAAAT
1 TTTTATAT
* *
11251414 TATATACAT
1 T-TTTATAT
11251423 TTTTA-AT
1 TTTTATAT
* *
11251430 TTTAAGGAGT
1 TTTTA-TA-T
11251440 TTTTA-AT
1 TTTTATAT
* *
11251447 TTTCACAT
1 TTTTATAT
11251455 TTTTATGAT
1 TTTTAT-AT
11251464 TTTTATAT
1 TTTTATAT
11251472 TTTTAT
1 TTTTAT
11251478 TAGAAATAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
7 11 0.17
8 26 0.40
9 23 0.35
10 5 0.08
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (8 bp):
TTTTATAT
Found at i:11251409 original size:17 final size:16
Alignment explanation
Indices: 11251389--11251477 Score: 56
Period size: 17 Copynumber: 5.4 Consensus size: 16
11251379 TTTTAGAAAC
*
11251389 TTTTATATTTTTCATAT
1 TTTTATATTTTT-ACAT
* *
11251406 TTTTAAATTATATACAT
1 TTTTATATT-TTTACAT
* *
11251423 TTTTA-ATTTTAAGGAGT
1 TTTTATATTTTTA-CA-T
*
11251440 TTTTA-ATTTTCACAT
1 TTTTATATTTTTACAT
*
11251455 TTTTATGATTTTTATAT
1 TTTTAT-ATTTTTACAT
11251472 TTTTAT
1 TTTTAT
11251478 TAGAAATAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
15 8 0.14
16 5 0.09
17 42 0.74
18 2 0.04
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (16 bp):
TTTTATATTTTTACAT
Found at i:11252502 original size:16 final size:16
Alignment explanation
Indices: 11252481--11252515 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
11252471 GGAAATGAAG
11252481 TTATTTATATATATAT
1 TTATTTATATATATAT
* *
11252497 TTATTTATTTATATTT
1 TTATTTATATATATAT
11252513 TTA
1 TTA
11252516 GAACAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTATTTATATATATAT
Found at i:11256591 original size:45 final size:45
Alignment explanation
Indices: 11256538--11256718 Score: 172
Period size: 45 Copynumber: 4.0 Consensus size: 45
11256528 CTTCAAAATT
*
11256538 AGTATCATTTTCAGATGCAGGATCAATCCTCTTTTCTTCCAAAAG
1 AGTATCATTTTCAGATGCAAGATCAATCCTCTTTTCTTCCAAAAG
* * * *
11256583 AGTATCATTATT-TGATGTAAGATCAATTCTCCTTTCTTCCAAAAG
1 AGTATCATT-TTCAGATGCAAGATCAATCCTCTTTTCTTCCAAAAG
* *
11256628 AG--T-ATTGTCAATGGATGCAAGATCAATCCTCTTTTCTTCCAAAAT
1 AGTATCATTTTC-A--GATGCAAGATCAATCCTCTTTTCTTCCAAAAG
* * * ** * *
11256673 AGTATCAGTTTCAGATGTAAGATTAATATTGTTTCCTTCCAAAAG
1 AGTATCATTTTCAGATGCAAGATCAATCCTCTTTTCTTCCAAAAG
11256718 A
1 A
11256719 ACTTGATCTG
Statistics
Matches: 108, Mismatches: 20, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
45 95 0.88
46 2 0.02
47 2 0.02
48 4 0.04
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (45 bp):
AGTATCATTTTCAGATGCAAGATCAATCCTCTTTTCTTCCAAAAG
Found at i:11264053 original size:16 final size:16
Alignment explanation
Indices: 11264034--11264088 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 16
11264024 TTAGTTCATC
11264034 TTTTTTTCTTTTCTTT
1 TTTTTTTCTTTTCTTT
**
11264050 TTTTTTT-TTGGC-TT
1 TTTTTTTCTTTTCTTT
*
11264064 TTGTTTTCTTCTTCTTT
1 TTTTTTTCTT-TTCTTT
11264081 TGTTTTTT
1 T-TTTTTT
11264089 TGTTGTTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
14 8 0.28
15 5 0.17
16 8 0.28
17 3 0.10
18 5 0.17
ACGTcount: A:0.00, C:0.11, G:0.07, T:0.82
Consensus pattern (16 bp):
TTTTTTTCTTTTCTTT
Found at i:11264116 original size:3 final size:3
Alignment explanation
Indices: 11264110--11264153 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
11264100 CAACACAAAG
11264110 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
11264154 CTTTGGATTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:11264533 original size:4 final size:4
Alignment explanation
Indices: 11264507--11264589 Score: 98
Period size: 4 Copynumber: 21.2 Consensus size: 4
11264497 GTAATATTCC
* * * * * *
11264507 TGTA TGAA TGAA TGAA TGAA TGTA TGTA TGTA TGCA TGCA TG-- TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
11264553 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
11264590 AATGGTGGCC
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
2 2 0.03
4 72 0.97
ACGTcount: A:0.29, C:0.02, G:0.25, T:0.43
Consensus pattern (4 bp):
TGTA
Found at i:11270806 original size:17 final size:18
Alignment explanation
Indices: 11270769--11270806 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
11270759 AAAATACTAA
11270769 TTACGAAAATGTAACATAT
1 TTACGAAAA-GTAACATAT
*
11270788 TTACGAAAA-TAATATAT
1 TTACGAAAAGTAACATAT
11270805 TT
1 TT
11270807 TCTATTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
19 9 0.50
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (18 bp):
TTACGAAAAGTAACATAT
Found at i:11271123 original size:15 final size:15
Alignment explanation
Indices: 11271090--11271129 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
11271080 GCGATTTCCT
* *
11271090 GATTTGTAGGTTTTTG
1 GATTT-TAGGGTTTAG
11271106 GATTTTAGGGTTTAG
1 GATTTTAGGGTTTAG
11271121 GATTTTAGG
1 GATTTTAGG
11271130 ATTTTGGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (15 bp):
GATTTTAGGGTTTAG
Found at i:11272591 original size:18 final size:17
Alignment explanation
Indices: 11272558--11272597 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
11272548 ATATTTCTAA
**
11272558 TTTTTTATTATTTTATT
1 TTTTTTATTAAATTATT
11272575 TATTTTTATTAAATTATT
1 T-TTTTTATTAAATTATT
11272593 TTTTT
1 TTTTT
11272598 ATAAGTGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTTATTAAATTATT
Found at i:11274422 original size:11 final size:11
Alignment explanation
Indices: 11274403--11274432 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
11274393 TCCAAACAAA
*
11274403 AATAACAATAT
1 AATAGCAATAT
11274414 AATAGCAATAT
1 AATAGCAATAT
11274425 AATAGCAA
1 AATAGCAA
11274433 ACGACATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.60, C:0.10, G:0.07, T:0.23
Consensus pattern (11 bp):
AATAGCAATAT
Found at i:11277096 original size:21 final size:20
Alignment explanation
Indices: 11277070--11277123 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 20
11277060 AATAGCGGTG
11277070 GCGGTGAGATTAATTACTGTA
1 GCGGTGAGATTAA-TACTGTA
*
11277091 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATT-AATACTGTA
*
11277112 GCGGTGATATTA
1 GCGGTGAGATTA
11277124 GAAACAATGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.26, C:0.09, G:0.33, T:0.31
Consensus pattern (20 bp):
GCGGTGAGATTAATACTGTA
Found at i:11286415 original size:12 final size:13
Alignment explanation
Indices: 11286398--11286434 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
11286388 GAACCGGACA
11286398 CGAACCGAA-CTC
1 CGAACCGAAGCTC
11286410 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
11286422 CGAACCGTAGCTC
1 CGAACCGAAGCTC
11286435 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:11290225 original size:15 final size:15
Alignment explanation
Indices: 11290205--11290258 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
11290195 TATGTGATAA
11290205 TAATTAATATAATAT
1 TAATTAATATAATAT
11290220 TAATTAATATAATAT
1 TAATTAATATAATAT
* * * *
11290235 CATATCAATACAAAAT
1 TA-ATTAATATAATAT
11290251 TAATTAAT
1 TAATTAAT
11290259 TTGGTGATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
15 21 0.66
16 11 0.34
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATTAATATAATAT
Found at i:11290543 original size:23 final size:22
Alignment explanation
Indices: 11290495--11290543 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
11290485 TATATAAGAG
*
11290495 AAATTAAATATATTTTTTAATT
1 AAATTAAATATATTTTTTAATA
11290517 AAATTAAATATCA-TTTTTATATA
1 AAATTAAATAT-ATTTTTTA-ATA
11290540 AAAT
1 AAAT
11290544 GGTAATCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
AAATTAAATATATTTTTTAATA
Found at i:11292630 original size:17 final size:18
Alignment explanation
Indices: 11292599--11292633 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
11292589 ATCTTATTTT
*
11292599 AGGATTTTTATTATTTAA
1 AGGAGTTTTATTATTTAA
11292617 AGGAGTTTTA-TATTTAA
1 AGGAGTTTTATTATTTAA
11292634 TTATTAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.51
Consensus pattern (18 bp):
AGGAGTTTTATTATTTAA
Found at i:11295241 original size:25 final size:25
Alignment explanation
Indices: 11295162--11295278 Score: 82
Period size: 25 Copynumber: 4.8 Consensus size: 25
11295152 GGGTCTTTTT
11295162 GAGCTTCCCGAT-TAATGGCTCTCCG
1 GAGCTTCCCGATAT-ATGGCTCTCCG
* * * **
11295187 AAGCTTCCTG--ATATGGCTCGCTT
1 GAGCTTCCCGATATATGGCTCTCCG
* *
11295210 GAACTTCCCGATATATGGCTATCCG
1 GAGCTTCCCGATATATGGCTCTCCG
* **
11295235 GAGCTTCCCGTTA-ATGGCTCTTTG
1 GAGCTTCCCGATATATGGCTCTCCG
* *
11295259 GAGCTACCCGTTAT-TGGCTC
1 GAGCTTCCCGATATATGGCTC
11295279 GCATGAGCAT
Statistics
Matches: 70, Mismatches: 18, Indels: 9
0.72 0.19 0.09
Matches are distributed among these distances:
23 15 0.21
24 27 0.39
25 28 0.40
ACGTcount: A:0.17, C:0.28, G:0.23, T:0.32
Consensus pattern (25 bp):
GAGCTTCCCGATATATGGCTCTCCG
Found at i:11295261 original size:24 final size:24
Alignment explanation
Indices: 11295136--11295278 Score: 83
Period size: 24 Copynumber: 5.8 Consensus size: 24
11295126 GTCTTTTCGT
* * *
11295136 GAGCTTCCCGATTAAAGGGTCTTTTT
1 GAGCTTCCCG-TTAATGGCTC-TTTG
**
11295162 GAGCTTCCCGATTAATGGCTCTCCG
1 GAGCTTCCCG-TTAATGGCTCTTTG
* * * *
11295187 AAGCTTCCTGAT-ATGGCTCGCTT-
1 GAGCTTCCCGTTAATGGCTC-TTTG
* * * **
11295210 GAACTTCCCGATATATGGCTATCCG
1 GAGCTTCCCGTTA-ATGGCTCTTTG
11295235 GAGCTTCCCGTTAATGGCTCTTTG
1 GAGCTTCCCGTTAATGGCTCTTTG
* *
11295259 GAGCTACCCGTTATTGGCTC
1 GAGCTTCCCGTTAATGGCTC
11295279 GCATGAGCAT
Statistics
Matches: 88, Mismatches: 25, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
23 16 0.18
24 27 0.31
25 26 0.30
26 19 0.22
ACGTcount: A:0.17, C:0.27, G:0.23, T:0.33
Consensus pattern (24 bp):
GAGCTTCCCGTTAATGGCTCTTTG
Found at i:11295277 original size:48 final size:48
Alignment explanation
Indices: 11295136--11295277 Score: 117
Period size: 48 Copynumber: 2.9 Consensus size: 48
11295126 GTCTTTTCGT
* * * * *
11295136 GAGCTTCCCGATTAAAGGGTCTTTTTGAGCTTCCCGATTAATGGCTCTCCG
1 GAGCTTCCCG-TTAATGGCTC-GTTTGAGCTTCCCG-TTATTGGCTATCCG
* * * * * *
11295187 AAGCTTCCTGAT-ATGGCTCGCTTGAACTTCCCGATATATGGCTATCCG
1 GAGCTTCCCGTTAATGGCTCGTTTGAGCTTCCCGTTAT-TGGCTATCCG
*
11295235 GAGCTTCCCGTTAATGGCTC-TTTGGAGCTACCCGTTATTGGCT
1 GAGCTTCCCGTTAATGGCTCGTTT-GAGCTTCCCGTTATTGGCT
11295278 CGCATGAGCA
Statistics
Matches: 70, Mismatches: 18, Indels: 9
0.72 0.19 0.09
Matches are distributed among these distances:
47 2 0.03
48 36 0.51
49 23 0.33
50 1 0.01
51 8 0.11
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (48 bp):
GAGCTTCCCGTTAATGGCTCGTTTGAGCTTCCCGTTATTGGCTATCCG
Found at i:11298167 original size:25 final size:24
Alignment explanation
Indices: 11298139--11298230 Score: 85
Period size: 25 Copynumber: 3.7 Consensus size: 24
11298129 TCTTAATATA
11298139 TGGCTCTCTTGAGCTTCTCGTTATC
1 TGGCTCTCTTGAGCTTCTCGTTA-C
** * *
11298164 TGGCTCTCACGAGCTTCCCGATAAC
1 TGGCTCTCTTGAGCTTCTCG-TTAC
* *
11298189 TGGCTCTTTTGAGCTTCTCGATTAA
1 TGGCTCTCTTGAGCTTCTCG-TTAC
* *
11298214 TAGCTCTCTAGAGCTTC
1 TGGCTCTCTTGAGCTTC
11298231 CTGATATTAG
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
25 51 0.96
26 2 0.04
ACGTcount: A:0.15, C:0.28, G:0.20, T:0.37
Consensus pattern (24 bp):
TGGCTCTCTTGAGCTTCTCGTTAC
Found at i:11298220 original size:50 final size:50
Alignment explanation
Indices: 11298139--11298236 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
11298129 TCTTAATATA
* *
11298139 TGGCTCTCTTGAGCTTCTCGTTATCTGGCTCTC-ACGAGCTTCCCGATAAC
1 TGGCTCTCTTGAGCTTCTCGTTATATAGCTCTCTA-GAGCTTCCCGATAAC
* *
11298189 TGGCTCTTTTGAGCTTCTCGATTA-ATAGCTCTCTAGAGCTTCCTGATA
1 TGGCTCTCTTGAGCTTCTCG-TTATATAGCTCTCTAGAGCTTCCCGATA
11298237 TTAGCTCGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 38 0.90
51 4 0.10
ACGTcount: A:0.16, C:0.28, G:0.19, T:0.37
Consensus pattern (50 bp):
TGGCTCTCTTGAGCTTCTCGTTATATAGCTCTCTAGAGCTTCCCGATAAC
Found at i:11298318 original size:25 final size:25
Alignment explanation
Indices: 11298260--11298333 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 25
11298250 GCTTCCTGAT
** *
11298260 TATGGCTCTTATGAGTTTTTCGTTA
1 TATGGCTCAAATGAGTTTCTCGTTA
*** *
11298285 TACAACTCACATGAGTTTCTCGTTA
1 TATGGCTCAAATGAGTTTCTCGTTA
*
11298310 TATGGCTCAAATGAGCTTCTCGTT
1 TATGGCTCAAATGAGTTTCTCGTT
11298334 TACACGTCTA
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.42
Consensus pattern (25 bp):
TATGGCTCAAATGAGTTTCTCGTTA
Found at i:11303762 original size:28 final size:28
Alignment explanation
Indices: 11303722--11303777 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
11303712 AGCTGTCGCG
11303722 GTTTGTGCTTCTATAATTCAATTTTGAT
1 GTTTGTGCTTCTATAATTCAATTTTGAT
11303750 GTTTGTGCTTCTATAATTCAATTTTGAT
1 GTTTGTGCTTCTATAATTCAATTTTGAT
11303778 TTACTTTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.11, G:0.14, T:0.54
Consensus pattern (28 bp):
GTTTGTGCTTCTATAATTCAATTTTGAT
Found at i:11314371 original size:30 final size:30
Alignment explanation
Indices: 11314337--11314399 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
11314327 ACTTAACAAG
11314337 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
11314367 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
11314397 CAA
1 CAA
11314400 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:11314448 original size:11 final size:11
Alignment explanation
Indices: 11314434--11314476 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
11314424 AAACAATAAC
11314434 AGCAAAATAGT
1 AGCAAAATAGT
* *
11314445 AGCAACATAAT
1 AGCAAAATAGT
* *
11314456 AGTAAAATGGT
1 AGCAAAATAGT
11314467 AGCAAAATAG
1 AGCAAAATAG
11314477 AGAGAAAACA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.53, C:0.09, G:0.19, T:0.19
Consensus pattern (11 bp):
AGCAAAATAGT
Found at i:11314454 original size:22 final size:22
Alignment explanation
Indices: 11314429--11314471 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
11314419 TATTCAAACA
11314429 ATAACAGCAAAATAGTAGCAAC
1 ATAACAGCAAAATAGTAGCAAC
* * *
11314451 ATAATAGTAAAATGGTAGCAA
1 ATAACAGCAAAATAGTAGCAA
11314472 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (22 bp):
ATAACAGCAAAATAGTAGCAAC
Found at i:11314484 original size:22 final size:22
Alignment explanation
Indices: 11314428--11314484 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 22
11314418 ATATTCAAAC
* *
11314428 AATAACAGCAAAATAGTAGCAA
1 AATAAGAGTAAAATAGTAGCAA
* * *
11314450 CATAATAGTAAAATGGTAGCAA
1 AATAAGAGTAAAATAGTAGCAA
11314472 AATAGAGAG-AAAA
1 AATA-AGAGTAAAA
11314485 CAACAAGAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
22 25 0.89
23 3 0.11
ACGTcount: A:0.58, C:0.09, G:0.18, T:0.16
Consensus pattern (22 bp):
AATAAGAGTAAAATAGTAGCAA
Found at i:11315441 original size:19 final size:17
Alignment explanation
Indices: 11315397--11315445 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 17
11315387 TGTTTGATTG
11315397 TTTATTAATATTAATATT
1 TTTATTAAT-TTAATATT
11315415 TTTAATTAGATTTAAATATT
1 TTT-ATTA-ATTT-AATATT
11315435 TTTATTAATTT
1 TTTATTAATTT
11315446 TAAACAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 7 0.25
19 10 0.36
20 11 0.39
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (17 bp):
TTTATTAATTTAATATT
Found at i:11315447 original size:19 final size:19
Alignment explanation
Indices: 11315397--11315449 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
11315387 TGTTTGATTG
*
11315397 TTTATTAATATT-AATATT
1 TTTATTAATTTTAAATATT
11315415 TTTAATTAGA-TTTAAATATT
1 TTT-ATTA-ATTTTAAATATT
11315435 TTTATTAATTTTAAA
1 TTTATTAATTTTAAA
11315450 CAATAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 4 0.13
19 16 0.53
20 10 0.33
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
TTTATTAATTTTAAATATT
Found at i:11320474 original size:32 final size:32
Alignment explanation
Indices: 11320433--11320495 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
11320423 AACCCCTCTT
*
11320433 CACAGAACAGAAATAAGTAAGGGTTTAAGGGC
1 CACAGAACAGAAATAAGTAAGGGCTTAAGGGC
11320465 CACAGAACAGAAATAAGTAAGGGCTTAAGGG
1 CACAGAACAGAAATAAGTAAGGGCTTAAGGG
11320496 ATCCCCTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.44, C:0.13, G:0.29, T:0.14
Consensus pattern (32 bp):
CACAGAACAGAAATAAGTAAGGGCTTAAGGGC
Found at i:11322275 original size:16 final size:16
Alignment explanation
Indices: 11322254--11322294 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
11322244 AATAATGGAA
11322254 ATATATAAAAACATGT
1 ATATATAAAAACATGT
* **
11322270 ATATATGAAAGTATGT
1 ATATATAAAAACATGT
11322286 ATATATAAA
1 ATATATAAA
11322295 TTAAGGAGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.54, C:0.02, G:0.10, T:0.34
Consensus pattern (16 bp):
ATATATAAAAACATGT
Found at i:11324406 original size:132 final size:132
Alignment explanation
Indices: 11324263--11324524 Score: 434
Period size: 132 Copynumber: 2.0 Consensus size: 132
11324253 TTCAACCTAC
* * * **
11324263 TCCACTACTGCTTATGGAAATGAGCTCTGTAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
1 TCCACTACTGCTTAGGGAAATAAGATCTAAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
*
11324328 AGAATTACTGGCCTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTACCATCTTCGATCT
66 AGAATTACTGGCCTCAATGTACTCCACTGTAACCACAAGGAGGTAAAATCTACCATCTTCGATCT
11324393 GT
131 GT
*
11324395 TCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
1 TCCACTACTGCTTAGGGAAATAAGATCTAAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
* * *
11324460 AGAATTACTGGCTTCAATGTACTCCACTGTAATCACAAGGAGGTAAAATCTGCCATCTTCGATCT
66 AGAATTACTGGCCTCAATGTACTCCACTGTAACCACAAGGAGGTAAAATCTACCATCTTCGATCT
11324525 TTAATCTATT
Statistics
Matches: 120, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 120 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (132 bp):
TCCACTACTGCTTAGGGAAATAAGATCTAAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
AGAATTACTGGCCTCAATGTACTCCACTGTAACCACAAGGAGGTAAAATCTACCATCTTCGATCT
GT
Found at i:11324412 original size:88 final size:88
Alignment explanation
Indices: 11324145--11324416 Score: 221
Period size: 88 Copynumber: 3.1 Consensus size: 88
11324135 CGCAACGTCG
*
11324145 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTAGGGAGGTAAAAT-TCACCATC
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTATGGAGGTAAAATCT-ACCATC
*
11324209 TTCGATCTGCTCCACTACTGCTTA
65 TTCGATCTGTTCCACTACTGCTTA
* * * *** ** ** * ** ***
11324233 GGGTGACAGAATCTGCAATCTTCAACCTACTCCAC--T-ACTGCTTATGGAAATGAGCTCTGTAA
1 GGGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAAC--CTTATGGAGGTAAAATCTACCA
* * * ** *
11324295 TCTTCAATCTATTCCACTGCCAAC-CA
63 TCTTCGATCTGTTCCACT-ACTGCTTA
* **
11324321 GGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTACCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTATGGAGGTAAAATCTACCATCT
11324386 TCGATCTGTTCCACTACTGCTTA
66 TCGATCTGTTCCACTACTGCTTA
11324409 GGGAGATA
1 GGGAGATA
11324417 AGATCTAAAA
Statistics
Matches: 126, Mismatches: 49, Indels: 18
0.65 0.25 0.09
Matches are distributed among these distances:
86 2 0.02
87 18 0.14
88 84 0.67
89 20 0.16
90 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (88 bp):
GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTATGGAGGTAAAATCTACCATCT
TCGATCTGTTCCACTACTGCTTA
Found at i:11324591 original size:95 final size:95
Alignment explanation
Indices: 11324426--11324764 Score: 558
Period size: 95 Copynumber: 3.6 Consensus size: 95
11324416 AAGATCTAAA
*
11324426 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
* *
11324491 ATCACAAGGAGGTAAAATCTGCCATCTTCG
66 GTCACAGGGAGGTAAAATCTGCCATCTTCG
*
11324521 ATCTTTAATCTATTCCACTGCCAACCAAGGAGATAGAATTA-TCGGCTTCAATGTACTCCACTGT
1 ATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACT-GGCTTCAATGTACTCCACTGT
11324585 AGTCACAGGGAGGTAAAATCTGCCATCTTCG
65 AGTCACAGGGAGGTAAAATCTGCCATCTTCG
*
11324616 ATCTGCAATCTATTCCACTGCCAACC-AGAGAGATAGAATTA-TCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAACCAAG-GAGATAGAATTACT-GGCTTCAATGTACTCCACTG
11324679 TAGTCACAGGGAGGTAAAATCTGCCATCTTCG
64 TAGTCACAGGGAGGTAAAATCTGCCATCTTCG
* * *
11324711 ATATTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGGATTCAATGT
1 ATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGT
11324765 CTGTTTAAAT
Statistics
Matches: 230, Mismatches: 10, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
94 3 0.01
95 225 0.98
96 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
GTCACAGGGAGGTAAAATCTGCCATCTTCG
Found at i:11324817 original size:190 final size:189
Alignment explanation
Indices: 11324428--11324824 Score: 498
Period size: 190 Copynumber: 2.1 Consensus size: 189
11324418 GATCTAAAAT
*
11324428 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAT
1 CTTCAATCTATTCCACTGCCAACCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAT
* *
11324493 CACAAGGAGGTAAAATCTGCCATCTTCGATCTTTAATCTATTCCACTGCCAACCAAGGAGATAGA
66 CACAAGGAGGTAAAATCTGCCATCTTCGATATTCAATCTATTCCACTGCCAACCAAGGAGATAGA
* * * * * ** * *
11324558 ATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGAT
131 ATTATCGGATTCAATGTACTCAAATGCAATCACAGGGAAATAAAATCTGCCATCGTC-AG
* *
11324618 CTGCAATCTATTCCACTGCCAACCAGAGAGATAGAATTA-TCGGCTTCAATGTACTCCACTGTAG
1 CTTCAATCTATTCCACTGCCAACCAGAGAGATAGAATTACT-GGCTTCAATGTACTCCACTGTAA
* *
11324682 TCACAGGGAGGTAAAATCTGCCATCTTCGATATTCAATCTATTCCACTGCCAACCAGGGAGATAG
65 TCACAAGGAGGTAAAATCTGCCATCTTCGATATTCAATCTATTCCACTGCCAACCAAGGAGATAG
* ** * * *
11324747 AATTA-CTGGATTCAATGT-CTGTTTAAATGCAATGTCGGGGAAATAAGAT-TCGCCGTCGT-AG
130 AATTATC-GGATTCAATGTAC---TCAAATGCAATCACAGGGAAATAAAATCT-GCCATCGTCAG
11324808 CTTCAATCTATTCCACT
1 CTTCAATCTATTCCACT
11324825 ACATCCCCAG
Statistics
Matches: 178, Mismatches: 23, Indels: 12
0.84 0.11 0.06
Matches are distributed among these distances:
189 3 0.02
190 152 0.85
191 1 0.01
192 22 0.12
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (189 bp):
CTTCAATCTATTCCACTGCCAACCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAT
CACAAGGAGGTAAAATCTGCCATCTTCGATATTCAATCTATTCCACTGCCAACCAAGGAGATAGA
ATTATCGGATTCAATGTACTCAAATGCAATCACAGGGAAATAAAATCTGCCATCGTCAG
Found at i:11324884 original size:100 final size:100
Alignment explanation
Indices: 11324768--11325706 Score: 961
Period size: 100 Copynumber: 9.5 Consensus size: 100
11324758 TCAATGTCTG
* * * * * * * *
11324768 TTTAAATGCAATGTCGGGGAAATAAGATTCGCCGTCGTAGCTTCAATCTATTCCACTACATCCCC
1 TTTAATTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCC
* * *
11324833 AGGGAAAGTAAGATTCGTCGTTGTGGCCTCAATCT
66 TGGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
* * * * * *
11324868 TTTAATTGCAATGTCGGGGAAG-CAGATTCACCGTTGTAGCTTCAATTTGTTCCACTGCACCGCT
1 TTTAATTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCC
* *
11324932 TGGGAAAGTAAGATTCGTCGTGGTGGCTTCAATCT
66 TGGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
* * *
11324967 TTTAATTGCAATGTTGGAGAAGCT-AGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCA-CTG
1 TTTAATTGCAATGTCGGGGAAG-TGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATC-G
* * *
11325030 CCTGGGAAAGTAAGATTCACTGTTGTAGCTTCAATCT
64 CCTGGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
* * * * * * *
11325067 TTTAATTGTAATATCAGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTTCGCTACATCGCC
1 TTTAATTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCC
11325132 T-GGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
66 TGGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
* * * * ** *
11325166 TTAAAATCGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTTCGCTTTATTGC
1 TT-TAATTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGC
* * * *
11325231 CT-TG-AAGTGAGATTCGCCGTCGTAGCTTCAATCT
65 CTGGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
**** * *
11325265 GTTCCGCTGC-ATCGCCTGGG-A---AG--T---C---GTAGCTTCAATCTGTTCCGCTGCATCG
1 -TTTAATTGCAAT-GTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCG
* * *
11325317 CCTGGG-AAGTAAGATTCACCATTGTGGCTTAAATCT
64 CCTGGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
* * * * *
11325353 TTTAAATTACAATGTCGGGGAAGTAAGATTTGCCGTCGTAGCTTTAATCTGTTCCGCTGCATCGC
1 TTT-AATTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGC
*
11325418 CTGGG-AAGTAAGATTCACCGTTGTGGCTTCAATCT
65 CTGGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
* *
11325453 TTAAAATTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCTGCTGCATCGC
1 TT-TAATTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGC
* * *
11325518 CT-GG-AAGTAAGATTCACCGTCGTGGCTTCAATAT
65 CTGGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
* * * * *
11325552 TTTAAATTGCAATGTCGGGGAAGTGAGATTCACCGTCGTAACTTTAATTTGTTCCGCTGCATCGC
1 TTT-AATTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGC
* * * *
11325617 CTAGGAAGGTAAGATTCGCCATTGTGGCCTCAATCT
65 CTGGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
* ** *
11325653 TTTAATTGCAATATCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
1 TTTAATTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCC
11325707 ACTGTACCGC
Statistics
Matches: 703, Mismatches: 109, Indels: 54
0.81 0.13 0.06
Matches are distributed among these distances:
87 28 0.04
88 32 0.05
89 3 0.00
90 1 0.00
92 2 0.00
93 1 0.00
94 1 0.00
95 2 0.00
97 1 0.00
98 3 0.00
99 241 0.34
100 360 0.51
101 28 0.04
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (100 bp):
TTTAATTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCC
TGGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
Found at i:11324961 original size:51 final size:51
Alignment explanation
Indices: 11324784--11325064 Score: 161
Period size: 51 Copynumber: 5.6 Consensus size: 51
11324774 TGCAATGTCG
* * * * * **
11324784 GGGAAA-TAAGATTCGCCGTCGTAGCTTCAATCTATTCCACTACA-TCCCCA
1 GGGAAAGTAAGATTCGCCGTGGTAGCTTCAATTTGTTCCACTGCACT-GCTT
* * * * * * * *
11324834 GGGAAAGTAAGATTCGTCGTTGTGGCCTCAATCTT-TT-AATTGCAATG-TC
1 GGGAAAGTAAGATTCGCCGTGGTAGCTTCAAT-TTGTTCCACTGCACTGCTT
* * * * *
11324883 GGGGAAG-CAGATTCACCGTTGTAGCTTCAATTTGTTCCACTGCACCGCTT
1 GGGAAAGTAAGATTCGCCGTGGTAGCTTCAATTTGTTCCACTGCACTGCTT
* * * * *
11324933 GGGAAAGTAAGATTCGTCGTGGTGGCTTCAATCTT-TT-AATTGCAATG-TT
1 GGGAAAGTAAGATTCGCCGTGGTAGCTTCAAT-TTGTTCCACTGCACTGCTT
* * *
11324982 -GGAGAAGCT-AGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCT
1 GGGA-AAG-TAAGATTCGCCGTGGTAGCTTCAATTTGTTCCACTGCACTGCTT
* * *
11325033 GGGAAAGTAAGATTCACTGTTGTAGCTTCAAT
1 GGGAAAGTAAGATTCGCCGTGGTAGCTTCAAT
11325065 CTTTTAATTG
Statistics
Matches: 174, Mismatches: 42, Indels: 29
0.71 0.17 0.12
Matches are distributed among these distances:
47 2 0.01
48 25 0.14
49 39 0.22
50 32 0.18
51 70 0.40
52 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (51 bp):
GGGAAAGTAAGATTCGCCGTGGTAGCTTCAATTTGTTCCACTGCACTGCTT
Found at i:11325139 original size:199 final size:200
Alignment explanation
Indices: 11324768--11325706 Score: 1002
Period size: 199 Copynumber: 4.8 Consensus size: 200
11324758 TCAATGTCTG
* * * * *
11324768 TTTAAA-TGCAATGTCGGGGAAATAAGATTCGCCGTCGTAGCTTCAATCTATTCCACTACATCCC
1 TTTAAATTGCAATGTCGGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCGC
* ** * *
11324832 CAGGGAAAGTAAGATTCGTCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGC-AGATT
66 CTGGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAATTGCAATATCGGGGAAGCGAGATT
* * * * ** *
11324896 CACCGTTGTAGCTTCAATTTGTTCCACTGCACCGCTTGGGAAAGTAAGATTCGTCGTGGTGGCTT
131 CACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT-GGAAAGTAAGATTCACCGTTGTGGCTT
11324961 CAATCT
195 CAATCT
* * * *
11324967 TTT-AATTGCAATGTTGGAGAAGCT-AGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCA-CT
1 TTTAAATTGCAATGTCGGGGAAG-TAAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATC-
* * * *
11325029 GCCTGGGAAAGTAAGATTCACTGTTGTAGCTTCAATCTTTTAATTGTAATATCAGGGAAGCGAGA
64 GCCTGGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAATTGCAATATCGGGGAAGCGAGA
* * *
11325094 TTCACCGTTGTAGCTTCAATCTGTTTCGCTACATCGCCTGGAAAGTAAGATTCGCCGTTGTGGCT
129 TTCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAAGTAAGATTCACCGTTGTGGCT
11325159 TCAATCT
194 TCAATCT
* * ** * * ** *
11325166 TTAAAATCGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTTCGCTTTATTGC
1 TTTAAATTGCAATGTCGGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCGC
* * * * * **** ***
11325231 CT-TG-AAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGC---ATC--GCCTG-G-GA-
66 CTGGGAAAGTAAGATTCACCGTTGTGGCTTCAATCT-TTTAATTGCAATATCGGGGAAGCGAGAT
* * *
11325286 --A--GTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCACCATTGTGGCTT
130 TCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAAGTAAGATTCACCGTTGTGGCTT
*
11325347 AAATCT
195 CAATCT
* * *
11325353 TTTAAATTACAATGTCGGGGAAGTAAGATTTGCCGTCGTAGCTTTAATCTGTTCCGCTGCATCGC
1 TTTAAATTGCAATGTCGGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCGC
* * *
11325418 CTGGG-AAGTAAGATTCACCGTTGTGGCTTCAATCTTTAAAATTGCAATGTCGGGGAAGTGAGAT
66 CTGGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTT-TAATTGCAATATCGGGGAAGCGAGAT
* * *
11325482 TCGCCGTTGTAGCTTCAATCTGTTCTGCTGCATCGCCTGG-AAGTAAGATTCACCGTCGTGGCTT
130 TCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAAGTAAGATTCACCGTTGTGGCTT
*
11325546 CAATAT
195 CAATCT
* * * * *
11325552 TTTAAATTGCAATGTCGGGGAAGTGAGATTCACCGTCGTAACTTTAATTTGTTCCGCTGCATCGC
1 TTTAAATTGCAATGTCGGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCGC
* * * * * *
11325617 CTAGGAAGGTAAGATTCGCCATTGTGGCCTCAATCTTTTAATTGCAATATCGGGGAAGCAAGATT
66 CTGGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAATTGCAATATCGGGGAAGCGAGATT
* *
11325682 CGCTGTTGTAGCTTCAATCTGTTCC
131 CACCGTTGTAGCTTCAATCTGTTCC
11325707 ACTGTACCGC
Statistics
Matches: 614, Mismatches: 103, Indels: 46
0.80 0.13 0.06
Matches are distributed among these distances:
187 116 0.19
188 30 0.05
189 1 0.00
191 2 0.00
192 2 0.00
193 3 0.00
194 3 0.00
195 2 0.00
196 3 0.00
198 29 0.05
199 273 0.44
200 150 0.24
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (200 bp):
TTTAAATTGCAATGTCGGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCGC
CTGGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAATTGCAATATCGGGGAAGCGAGATT
CACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAAGTAAGATTCACCGTTGTGGCTTC
AATCT
Found at i:11325195 original size:50 final size:49
Alignment explanation
Indices: 11324768--11325701 Score: 293
Period size: 50 Copynumber: 19.0 Consensus size: 49
11324758 TCAATGTCTG
* ** *
11324768 TTTAAATGCAATGTCGGGGAAATAAGATTCGCCGTCGTAGCTTCAATCT
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
** * * ** * * * * *
11324817 ATTCCACTAC-ATCCCCAGGGAAAGTAAGATTCGTCGTTGTGGCCTCAATCT
1 -TTTAATTGCAAT-GTC-GGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
*
11324868 TTTAATTGCAATGTCGGGGAAGC-AGATTCACCGTTGTAGCTTCAAT-T
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
* * ** * * * * * *
11324915 TGTTCCACTGCACCGCTTGGGAAAGTAAGATTCGTCGTGGTGGCTTCAATCT
1 T-TT-AATTGCAATG-TCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
* * *
11324967 TTTAATTGCAATGTTGGAGAAGCTAGATTCGCCGTTGTAGCTTCAATCT
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
** * * * * * * *
11325016 GTTCCACTGCACTGCCTGGGAAAGTAAGATTCACTGTTGTAGCTTCAATCT
1 -TTTAATTGCAATGTC-GGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
* * * * *
11325067 TTTAATTGTAATATCAGGGAAGCGAGATTCACCGTTGTAGCTTCAATCT
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
* * * * * * *
11325116 GTT--TCGCTACATCGCCTGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
1 TTTAATTGC-A-AT-GTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
* * *
11325166 TTAAAATCGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCT
1 TT-TAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
** * * *** ** *
11325216 GTTTCGCTT-TATTG-CCTTGAAGTGAGATTCGCCGTCGTAGCTTCAATCT
1 -TTT-AATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
**** **
11325265 GTTCCGCTGC-ATCG-CCTGG--G-AAG--T---C---GTAGCTTCAATCT
1 -TTTAATTGCAAT-GTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
**** * * * * * * *
11325303 GTTCCGCTGC-ATCGCCTGGGAAGTAAGATTCACCATTGTGGCTTAAATCT
1 -TTTAATTGCAAT-GTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
* * * * *
11325353 TTTAAATTACAATGTCGGGGAAGTAAGATTTGCCGTCGTAGCTTTAATCT
1 TTT-AATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
**** * * * * *
11325403 GTTCCGCTGC-ATCGCCTGGGAAGTAAGATTCACCGTTGTGGCTTCAATCT
1 -TTTAATTGCAAT-GTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
* **
11325453 TTAAAATTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCT
1 TT-TAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
** ** * * * * *
11325503 GTTCT-GCTGC-ATCG-CCTGGAAGTAAGATTCACCGTCGTGGCTTCAATAT
1 -TT-TAATTGCAAT-GTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
** * * * *
11325552 TTTAAATTGCAATGTCGGGGAAGTGAGATTCACCGTCGTAACTTTAAT-T
1 TTT-AATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
*** * ** * * * *
11325601 TGTTCCGCTGC-ATCGCCTAGGAAGGTAAGATTCGCCATTGTGGCCTCAATCT
1 T-TT-AATTGCAAT-GTCGGGGAA-GCAAGATTCGCCGTTGTAGCTTCAATCT
* *
11325653 TTTAATTGCAATATCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCT
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
11325702 GTTCCACTGT
Statistics
Matches: 643, Mismatches: 192, Indels: 99
0.69 0.21 0.11
Matches are distributed among these distances:
38 27 0.04
39 3 0.00
41 2 0.00
42 3 0.00
44 2 0.00
46 2 0.00
47 7 0.01
48 26 0.04
49 181 0.28
50 267 0.42
51 114 0.18
52 5 0.01
53 4 0.01
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (49 bp):
TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCT
Found at i:11325300 original size:38 final size:38
Alignment explanation
Indices: 11325249--11325326 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
11325239 GAGATTCGCC
11325249 GTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAA
1 GTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAA
11325287 GTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAA
1 GTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAA
11325325 GT
1 GT
11325327 AAGATTCACC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.15, C:0.28, G:0.27, T:0.29
Consensus pattern (38 bp):
GTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAA
Found at i:11325419 original size:287 final size:287
Alignment explanation
Indices: 11324791--11325549 Score: 805
Period size: 287 Copynumber: 2.6 Consensus size: 287
11324781 TCGGGGAAAT
* * * * * **
11324791 AAGATTCGCCGTCGTAGCTTCAATCTATTCCACTACATCCCCAGGGAAAGTAAGATTCGTCGTTG
1 AAGATTCACCGTCGTAGCTTCAATCTGTTCCGCTACATCGCC-TGGAAAGTAAGATTCACCGTTG
* * * * *
11324856 TGGCCTCAATCTTT-TAATTGCAATGTCGGGGAAGC-AGATTCACCGTTGTAGCTTCAATTTGTT
65 TGGCTTCAATCTTTAAAATCGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTT
** * * ** * * **** *
11324919 CCACTGCACCGCTTGGGAAAGTAAGATTCGTCGTGGTGGCTTCAATCT-TTTAATTGCAAT-G-T
130 CTGCTGCATCGCCT-GG-AAGTAAGATTCACCGTCGTAGCTTCAATCTGTTCCGCTGC-ATCGCC
11324981 TGGAGAAGCTAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCTGGGAAAGTAAGAT
192 TGG-G-A---AG--T---C---GTAGCTTCAATCTGTTCCACTGCACTGCCTGGGAAAGTAAGAT
** * **
11325046 TCACTGTTGTAGCTTCAATCTTTTAATTGTAATATCAGGGAAGC
244 TCACCATTGTAGCTTAAATCTTTTAATTACAATATCAGGGAAGC
* * * *
11325090 GAGATTCACCGTTGTAGCTTCAATCTGTTTCGCTACATCGCCTGGAAAGTAAGATTCGCCGTTGT
1 AAGATTCACCGTCGTAGCTTCAATCTGTTCCGCTACATCGCCTGGAAAGTAAGATTCACCGTTGT
11325155 GGCTTCAATCTTTAAAATCGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTT-
66 GGCTTCAATCTTTAAAATCGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTC
** * * * *
11325219 TCGCTTTATTGCCTTGAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGG
131 T-GCTGCATCGCCTGGAAGTAAGATTCACCGTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGG
* *
11325284 GAAGTCGTAGCTTCAATCTGTTCCGCTGCA-TCGCCTGGG-AAGTAAGATTCACCATTGTGGCTT
195 GAAGTCGTAGCTTCAATCTGTTCCACTGCACT-GCCTGGGAAAGTAAGATTCACCATTGTAGCTT
* * *
11325347 AAATCTTTTAAATTACAATGTCGGGGAAGT
259 AAATCTTTT-AATTACAATATCAGGGAAGC
** * * *
11325377 AAGATTTGCCGTCGTAGCTTTAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCACCGTTGT
1 AAGATTCACCGTCGTAGCTTCAATCTGTTCCGCTACATCGCCTGGAAAGTAAGATTCACCGTTGT
* *
11325442 GGCTTCAATCTTTAAAATTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTC
66 GGCTTCAATCTTTAAAATCGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTC
*
11325507 TGCTGCATCGCCTGGAAGTAAGATTCACCGTCGTGGCTTCAAT
131 TGCTGCATCGCCTGGAAGTAAGATTCACCGTCGTAGCTTCAAT
11325550 ATTTTAAATT
Statistics
Matches: 392, Mismatches: 59, Indels: 30
0.81 0.12 0.06
Matches are distributed among these distances:
286 30 0.08
287 198 0.51
288 1 0.00
290 1 0.00
293 1 0.00
295 2 0.01
298 62 0.16
299 62 0.16
300 35 0.09
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.32
Consensus pattern (287 bp):
AAGATTCACCGTCGTAGCTTCAATCTGTTCCGCTACATCGCCTGGAAAGTAAGATTCACCGTTGT
GGCTTCAATCTTTAAAATCGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTC
TGCTGCATCGCCTGGAAGTAAGATTCACCGTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGG
AAGTCGTAGCTTCAATCTGTTCCACTGCACTGCCTGGGAAAGTAAGATTCACCATTGTAGCTTAA
ATCTTTTAATTACAATATCAGGGAAGC
Found at i:11325825 original size:43 final size:43
Alignment explanation
Indices: 11325778--11326090 Score: 124
Period size: 44 Copynumber: 7.2 Consensus size: 43
11325768 GCAAGATCTG
*
11325778 TTGTCTTCAACCAGCTCCACTACAACCGCGAGAGCCAAGGTTT
1 TTGTCTTCAACCAGCTCCACTACAACCGCGAGAGGCAAGGTTT
* * * * * * * * *
11325821 TTGTCTTCGATCTGCTTCGCTGTCAA-GGC-AGGAAGGCAAGATCTG
1 TTGTCTTCAACCAGCTCCACT-ACAACCGCGA-G-AGGCAAGGT-TT
* *
11325866 TTGTCTTCAACCAGCTCCACTACAACTGAGAGAGGCAAGGTTT
1 TTGTCTTCAACCAGCTCCACTACAACCGCGAGAGGCAAGGTTT
* * * * * * * *
11325909 GTGTCTTCGATCTA-CTTCGCTGTCAA--G-GTAGGAAGGCAAGATCTG
1 TTGTCTTC-AACCAGCTCCACT-ACAACCGCG-A-G-AGGCAAGGT-TT
* *
11325954 TTGTCTTCAACCAGCTCCACTACAA--TCGAGAGGTAAGGTTT
1 TTGTCTTCAACCAGCTCCACTACAACCGCGAGAGGCAAGGTTT
* * * * * * * * * *
11325995 GTGTCTTCGATCTGCTTCGCTGTCAA-GGC-AGGAAGGCAAGATCTG
1 TTGTCTTCAACCAGCTCCACT-ACAACCGCGA-G-AGGCAAGGT-TT
*
11326040 TTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTT
1 TTGTCTTCAACCAGCTCCACTACAACCGCGAGAGGCAAGGTTT
*
11326083 GTGTCTTC
1 TTGTCTTC
11326091 GATCTGCTTC
Statistics
Matches: 188, Mismatches: 61, Indels: 42
0.65 0.21 0.14
Matches are distributed among these distances:
41 17 0.09
42 14 0.07
43 44 0.23
44 60 0.32
45 51 0.27
46 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (43 bp):
TTGTCTTCAACCAGCTCCACTACAACCGCGAGAGGCAAGGTTT
Found at i:11325868 original size:88 final size:88
Alignment explanation
Indices: 11325731--11326136 Score: 642
Period size: 88 Copynumber: 4.6 Consensus size: 88
11325721 GAAAGTTAGA
* *
11325731 TTTGCTGTCTTAGATCTGC-TCTGTTGTCAA--CAGGAAGGCAAGATCTGTTGTCTTCAACCAGC
1 TTTG-TGTCTTCGATCTGCTTC-GCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGC
* *
11325793 TCCACTACAACCGCGAGAGCCAAGG
64 TCCACTACAACCGAGAGAGGCAAGG
*
11325818 TTTTTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
*
11325883 CACTACAACTGAGAGAGGCAAGG
66 CACTACAACCGAGAGAGGCAAGG
* *
11325906 TTTGTGTCTTCGATCTACTTCGCTGTCAAGGTAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
* *
11325971 CACTACAATC--GAGAGGTAAGG
66 CACTACAACCGAGAGAGGCAAGG
11325992 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
11326057 CACTACAACCGAGAGAGGCAAGG
66 CACTACAACCGAGAGAGGCAAGG
* * *
11326080 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAAGCAAGATATGATGTCTTCA
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCA
11326137 TTGATCTGTT
Statistics
Matches: 295, Mismatches: 19, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
86 102 0.35
87 5 0.02
88 188 0.64
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (88 bp):
TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
CACTACAACCGAGAGAGGCAAGG
Found at i:11326054 original size:174 final size:175
Alignment explanation
Indices: 11325761--11326136 Score: 646
Period size: 174 Copynumber: 2.1 Consensus size: 175
11325751 CTGTTGTCAA
*
11325761 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGCGAGAGCCAAGGTTTTTGTC
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAA-CGCGAGAGCCAAGGTTTGTGTC
11325826 TTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAA
65 TTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAA
*
11325891 CTGAGAGAGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGTCAAGG
130 CCGAGAGAGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGTCAAGG
* * **
11325937 TAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAA-TCGAGAGGTAAGGTTTGTGTCT
1 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACGCGAGAGCCAAGGTTTGTGTCT
11326001 TCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAAC
66 TCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAAC
*
11326066 CGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGG
131 CGAGAGAGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGTCAAGG
* * *
11326111 CAGGAAAGCAAGATATGATGTCTTCA
1 CAGGAAGGCAAGATCTGTTGTCTTCA
11326137 TTGATCTGTT
Statistics
Matches: 189, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
174 148 0.78
176 41 0.22
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (175 bp):
CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACGCGAGAGCCAAGGTTTGTGTCT
TCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAAC
CGAGAGAGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGTCAAGG
Done.