Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 48 of 230
Found at i:12967895 original size:16 final size:16
Alignment explanation
Indices: 12967874--12967905 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
12967864 TTTCTAAGGA
12967874 ACACAAAGGTATATTG
1 ACACAAAGGTATATTG
12967890 ACACAAAGGTATATTG
1 ACACAAAGGTATATTG
12967906 GTTAAGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (16 bp):
ACACAAAGGTATATTG
Found at i:12970699 original size:31 final size:31
Alignment explanation
Indices: 12970664--12970725 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
12970654 AGGCAAATTA
*
12970664 CAAGAGTAATTGAATCCTAATAAATCTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
12970695 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
12970726 AAAATTATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:12972663 original size:26 final size:26
Alignment explanation
Indices: 12972634--12972683 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
12972624 TTCGGTTTTA
12972634 TTTAAAAT-ATTTATTTCGATTTTAAT
1 TTTAAAATGATTT-TTTCGATTTTAAT
*
12972660 TTTAAATTGATTTTTTCGATTTTA
1 TTTAAAATGATTTTTTCGATTTTA
12972684 CCTTAGTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (26 bp):
TTTAAAATGATTTTTTCGATTTTAAT
Found at i:12973424 original size:27 final size:28
Alignment explanation
Indices: 12973365--12973435 Score: 69
Period size: 29 Copynumber: 2.5 Consensus size: 28
12973355 TTTATACTTG
*
12973365 TTATAATTA-TA-A-ATTTAACAAATAT
1 TTATAATTATTACATATTTAACAAATAC
12973390 TGTGATAATTATTACATATTTAA-AAATAC
1 T-T-ATAATTATTACATATTTAACAAATAC
12973419 TTATAATTTAATTACAT
1 TTATAA-TT-ATTACAT
12973436 TTATTATTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
25 1 0.03
26 1 0.03
27 11 0.29
28 5 0.13
29 14 0.37
30 6 0.16
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (28 bp):
TTATAATTATTACATATTTAACAAATAC
Found at i:12987537 original size:44 final size:43
Alignment explanation
Indices: 12987474--12988103 Score: 164
Period size: 44 Copynumber: 14.3 Consensus size: 43
12987464 AATCACATCT
12987474 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACT-AAGTAAG-CA
1 AGTCTTATCTCC-TGAAGTTGCAGT-GAGCAGACTGAAG-AAGACA
* *
12987518 AGTCTTATCCTCCTAAAGTTGCAGTGAGGCAGACTGAAGATGACA
1 AGTCTTAT-CTCCTGAAGTTGCAGTGA-GCAGACTGAAGAAGACA
* * * **
12987563 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCGACA
1 AGTCTTATCT-CCTGAAGTTGCAGT-GAGCAGACTGAAGAAGACA
* * * ***
12987608 A-TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAA-ATCTC-
1 AGTCTTATCT-CCTGAAGTTGCAGT-GAGCAGACTGAAGAAGACA
* * * * *
12987650 AGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA-T--CGCA-TCT
1 AG-TCTTATCTC-CTGAAGTTGCAGTGAGCAGACTGAAGAAGACA
*
12987691 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAATGGAGCAGATTAAAACCAA
1 AGTCTTATCT-CCTGAAGTTGCAGT-GAGCAGAC---T-GA--AG---AAGA-C-A
* * * * * * *
12987747 CAATCCTATCTCCCTGAAGTTGCGGTGGAGCGGA-TTAA-AA-TCTC
1 -AGTCTTATCTC-CTGAAGTTGCAGT-GAGCAGACTGAAGAAGAC-A
* * * * * * *
12987791 AGATCTTACCTTTCTGAAGTTGCAGAGAGCAGA-T--CGCA-TCT
1 AG-TCTTATC-TCCTGAAGTTGCAGTGAGCAGACTGAAGAAGACA
12987832 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAG-CA
1 AGTCTTATCT-CCTGAAGTTGCAGT-GAGCAGACTGAAG-AAGACA
* * * *
12987876 AGTCTTATCCTCCCGGAGTTGCAGTGAGGTAGACTGAAGATGACA
1 AGTCTTAT-CTCCTGAAGTTGCAGTGA-GCAGACTGAAGAAGACA
* * * * **
12987921 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCGACA
1 AGTCTTATCT-CCTGAAGTTGCAGT-GAGCAGACTGAAGAAGACA
* * * * *
12987966 ATTC-TATCTCCCTGAAGTTGCAGTGGAGCGGA-TTAA-AA-TCTC
1 AGTCTTATCT-CCTGAAGTTGCAGT-GAGCAGACTGAAGAAGAC-A
* * * * *
12988008 AGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA-T---CACGTCT
1 AG-TCTTATCTC-CTGAAGTTGCAGTGAGCAGACTGAAGAAGACA
* *
12988049 AGTATTATCTCTCTGAAGTTGCAGAGAGCAGACT-AAGTAAGA-A
1 AGTCTTATCTC-CTGAAGTTGCAGTGAGCAGACTGAAG-AAGACA
*
12988092 AATCTTATCTCC
1 AGTCTTATCTCC
12988104 CTAAGTAGTA
Statistics
Matches: 449, Mismatches: 82, Indels: 112
0.70 0.13 0.17
Matches are distributed among these distances:
39 1 0.00
40 69 0.15
41 24 0.05
42 10 0.02
43 43 0.10
44 175 0.39
45 87 0.19
46 6 0.01
50 2 0.00
52 1 0.00
53 2 0.00
55 1 0.00
56 1 0.00
57 27 0.06
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
AGTCTTATCTCCTGAAGTTGCAGTGAGCAGACTGAAGAAGACA
Found at i:12987766 original size:141 final size:141
Alignment explanation
Indices: 12987589--12987868 Score: 506
Period size: 141 Copynumber: 2.0 Consensus size: 141
12987579 AGTTGCAGTA
* * *
12987589 GAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAATCTCAGAT
1 GAGCAGATTAAAACCAACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCTCAGAT
*
12987654 CTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGA
66 CTTACCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGA
12987719 GCAGACTAATG
131 GCAGACTAATG
*
12987730 GAGCAGATTAAAACCAACAATCCTATCTCCCTGAAGTTGCGGTGGAGCGGATTAAAATCTCAGAT
1 GAGCAGATTAAAACCAACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCTCAGAT
*
12987795 CTTACCTTTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGA
66 CTTACCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGA
12987860 GCAGACTAA
131 GCAGACTAA
12987869 GTAAGCAAGT
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 133 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (141 bp):
GAGCAGATTAAAACCAACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCTCAGAT
CTTACCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGA
GCAGACTAATG
Found at i:12987953 original size:45 final size:43
Alignment explanation
Indices: 12987834--12987993 Score: 173
Period size: 44 Copynumber: 3.6 Consensus size: 43
12987824 TCGCATCTAG
* * *
12987834 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTGA-CAAA
*
12987878 TCTTATCCTCCC-GGAGTTGCAGT-GAGGTAGACTGAAGATGACAAA
1 TCTTAT-CTCCCTGAAGTTGCAGTGGA-GTAGACT-AAG-TGACAAA
* * *
12987923 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCGACAAT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACT-AAG-TGACAAA
12987968 TC-TATCTCCCTGAAGTTGCAGTGGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAG
12987994 CGGATTAAAA
Statistics
Matches: 100, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
43 2 0.02
44 51 0.51
45 43 0.43
46 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTGACAAA
Found at i:12988059 original size:358 final size:357
Alignment explanation
Indices: 12987391--12988084 Score: 1183
Period size: 358 Copynumber: 1.9 Consensus size: 357
12987381 ATCACTAGGC
*
12987391 ATCCTATCTCCCTGAAGAGGCAGTGGAGCGGATTAAAATCTCAGATCTTATCTCTTTGAAGTTGC
1 ATCCTATCTCCCTGAAGAGGCAGTGGAGCGGATTAAAATCTCAGATCTTACCTCTTTGAAGTTGC
*
12987456 AGAGAGCAAATCACATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
66 AGAGAGCAAATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
*
12987521 CTTATCCTCCTAAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAGTTGCA
131 CTTATCCTCCCAAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAGTTGCA
*
12987586 GTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAATCTCA
196 GTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCTCA
* *
12987651 GATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGT
261 GATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCTAGTATTATCTCCCTGAAGTTGCAG-
*
12987716 GGAGCAGACTAATGGAGCAGATTAAAACCAACA
325 AGAGCAGACTAATGGAGCAGATTAAAACCAACA
** *
12987749 ATCCTATCTCCCTGAAGTTGCGGTGGAGCGGATTAAAATCTCAGATCTTACCT-TTCTGAAGTTG
1 ATCCTATCTCCCTGAAGAGGCAGTGGAGCGGATTAAAATCTCAGATCTTACCTCTT-TGAAGTTG
* *
12987813 CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
65 CAGAGAGCAAATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
** *
12987878 TCTTATCCTCCCGGAGTTGCAGTGAGGTAGACTGAAGATGACAAATCTTATCTCCCTGAAGTTGC
130 TCTTATCCTCCCAAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAGTTGC
* * *
12987943 AGTGGAGTAGATTAAAGCCGACAATTCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCTC
195 AGTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCTC
* *
12988008 AGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACGTCTAGTATTATCTCTCTGAAGTTGCAG
260 AGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCTAGTATTATCTCCCTGAAGTTGCAG
12988073 AGAGCAGACTAA
325 AGAGCAGACTAA
12988085 GTAAGAAAAT
Statistics
Matches: 315, Mismatches: 20, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
357 13 0.04
358 302 0.96
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (357 bp):
ATCCTATCTCCCTGAAGAGGCAGTGGAGCGGATTAAAATCTCAGATCTTACCTCTTTGAAGTTGC
AGAGAGCAAATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
CTTATCCTCCCAAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAGTTGCA
GTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCTCA
GATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCTAGTATTATCTCCCTGAAGTTGCAGA
GAGCAGACTAATGGAGCAGATTAAAACCAACA
Found at i:12988242 original size:215 final size:217
Alignment explanation
Indices: 12987736--12988244 Score: 476
Period size: 217 Copynumber: 2.4 Consensus size: 217
12987726 AATGGAGCAG
* * * *** * * * * *
12987736 ATTAAAACCAACAATCCTATCTCCCTGAAGTTGCGGTGGAGCGGATTAAAATCTCAGATCTTACC
1 ATTAAAGCCGACAATTCTATCTCCCTGAAGCAACAGTGGAACAGATTAAAATCTAAGATCTTATC
** * * *
12987801 TTTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
66 TCCCTGAAGTTGCAGAGAGCAGATCACATCTAGTATTATCTCCCTGAAGTTGCAGTAGAGCAGAC
* * * * * *
12987866 TAAGTAAGCAAGTCTTATCCTCCCGGAGTTGCAGTGAGGTAGACTGAAGATGACAAATCTTATCT
131 TAAGTAAGAAAATCTTATCCTCCCGAAGTAGCAGGGAGGCAGACTGAAGATGACAAATCTTATCT
* *
12987931 CCCTGAAGTTGCAGTGGAGTAG
196 CCCTGAAGTTACAGTGGAGTAC
*** * * *
12987953 ATTAAAGCCGACAATTCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCTCAGATCTTATC
1 ATTAAAGCCGACAATTCTATCTCCCTGAAGCAACAGTGGAACAGATTAAAATCTAAGATCTTATC
* * *
12988018 TCTCTGAAGTTGCAGAGAGCAGATCACGTCTAGTATTATCTCTCTGAAGTTGCAG-AGAGCAGAC
66 TCCCTGAAGTTGCAGAGAGCAGATCACATCTAGTATTATCTCCCTGAAGTTGCAGTAGAGCAGAC
* * * ** *
12988082 TAAGTAAGAAAATCTTAT-CTCCCTAAGTAGTAGCGGA-GCAGA-TCGAAGATGGCGGATTTTAT
131 TAAGTAAGAAAATCTTATCCTCCCGAAGTAGCAG-GGAGGCAGACT-GAAGATGACAAATCTTAT
** *
12988144 CTCCCTGTGGTTACATTGGAGTAC
194 CTCCCTGAAGTTACAGTGGAGTAC
* * * * *
12988168 ATTAAAGCC-AGTAATTCTA-CTTCCCTG-GGCAACAGTGGAATAGATTGAAGATTGTAAG-TCT
1 ATTAAAGCCGA-CAATTCTATC-TCCCTGAAGCAACAGTGGAACAGATT-AA-AATCTAAGATCT
*
12988229 TATTTCCCTGAAGTTG
62 TATCTCCCTGAAGTTG
12988245 TAGTGGAATA
Statistics
Matches: 245, Mismatches: 41, Indels: 14
0.82 0.14 0.05
Matches are distributed among these distances:
214 15 0.06
215 89 0.36
216 31 0.13
217 110 0.45
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (217 bp):
ATTAAAGCCGACAATTCTATCTCCCTGAAGCAACAGTGGAACAGATTAAAATCTAAGATCTTATC
TCCCTGAAGTTGCAGAGAGCAGATCACATCTAGTATTATCTCCCTGAAGTTGCAGTAGAGCAGAC
TAAGTAAGAAAATCTTATCCTCCCGAAGTAGCAGGGAGGCAGACTGAAGATGACAAATCTTATCT
CCCTGAAGTTACAGTGGAGTAC
Found at i:12989431 original size:31 final size:31
Alignment explanation
Indices: 12989395--12989468 Score: 139
Period size: 31 Copynumber: 2.4 Consensus size: 31
12989385 CTTGAAGGGA
12989395 GGATCCGCGTGTCGACCCGACCCGGATCCAG
1 GGATCCGCGTGTCGACCCGACCCGGATCCAG
*
12989426 GGATCCGCGCGTCGACCCGACCCGGATCCAG
1 GGATCCGCGTGTCGACCCGACCCGGATCCAG
12989457 GGATCCGCGTGT
1 GGATCCGCGTGT
12989469 TTTCATACGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.15, C:0.38, G:0.34, T:0.14
Consensus pattern (31 bp):
GGATCCGCGTGTCGACCCGACCCGGATCCAG
Found at i:12990509 original size:13 final size:13
Alignment explanation
Indices: 12990491--12990515 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12990481 TATTTTTATA
12990491 TTATTTTGTGTGT
1 TTATTTTGTGTGT
12990504 TTATTTTGTGTG
1 TTATTTTGTGTG
12990516 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:12992136 original size:41 final size:41
Alignment explanation
Indices: 12992087--12992231 Score: 245
Period size: 41 Copynumber: 3.5 Consensus size: 41
12992077 GACTTTAAGT
12992087 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
12992128 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* * *
12992169 CTATCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
12992210 TTAGCAGGTTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
12992232 ATATGTTAAA
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 98 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:13008784 original size:324 final size:323
Alignment explanation
Indices: 13008195--13008843 Score: 1226
Period size: 324 Copynumber: 2.0 Consensus size: 323
13008185 TGTAGTTTCA
13008195 TTTTTTTTTTCAAAGGATCACAAAAAATAAAAAGGGGGGTTCCCTTTTCTCAGCTAGGGTTCCAA
1 TTTTTTTTTTCAAAGGATCACAAAAAATAAAAAGGGGGGTTCCCTTTTCTCAGCTAGGGTTCCAA
* *
13008260 GGCTAGGAACCCCGCCGCCATCACGCCTCCCCACTTTCCGGTGGCCAGAGCCATGCGAGGGCGCC
66 GGCTAGGAACCCCGCCGCCATCACACCTCCCCACTTCCCGGTGGCCAGAGCCATGCGAGGGCGCC
*
13008325 TTCTATCGGCGCATTGAAGCGCGTTTAGAGGTCGAGGCCATGGAACGGGGAAACAAAGTGAAAGA
131 TTCTATCGGCGCATTGAAGCGCGTTCAGAGGTCGAGGCCATGGAACGGGGAAACAAAGTGAAAGA
*
13008390 GAAAAGCTTTGGCCCCTCCCTAAACCCACGACCGGCGACGGTGGAGTACCATCGACGACGGGCCT
196 GAAAAGCTTTGGCCCCTCCCTAAACCCACGACCGGCGACGGTGGAGTACCATCGACGACAGGCCT
*
13008455 AAGGGCCGATTCAGGTAGTTTTTTTTCCTTTCTTTTTTGTTGTTGATTATTTTTAAGATCGAT
261 AAGGGCCGATTCAGGTAGTTTCTTTTCCTTTCTTTTTTGTTGTTGATTATTTTTAAGATCGAT
*
13008518 TTTTTTTTTTGCAAAGGATCACAAAAAATAAAAAGGGGGGTTCCCTTTTCTTAGCTAGGGTTCCA
1 TTTTTTTTTT-CAAAGGATCACAAAAAATAAAAAGGGGGGTTCCCTTTTCTCAGCTAGGGTTCCA
*
13008583 AGGCTAGGAACCCCGCCGCCATCACACCTCCCCACTTCCCGGTGGCCGGAGCCATGCGAGGGCGC
65 AGGCTAGGAACCCCGCCGCCATCACACCTCCCCACTTCCCGGTGGCCAGAGCCATGCGAGGGCGC
13008648 CTTCTATCGGCGCATTGAAGCGCGTTCAGAGGTCGAGGCCATGGAACGGGGAAACAAAGTGAAAG
130 CTTCTATCGGCGCATTGAAGCGCGTTCAGAGGTCGAGGCCATGGAACGGGGAAACAAAGTGAAAG
13008713 AGAAAAGCTTTGGCCCCTCCCTAAACCCACGACCGGCGACGGTGGAGTACCATCGACGACAGGCC
195 AGAAAAGCTTTGGCCCCTCCCTAAACCCACGACCGGCGACGGTGGAGTACCATCGACGACAGGCC
13008778 TAAGGGCCGATTCAGGTAGTTTCTTTTCCTTTCTTTTTTGTTGTTGATTATTTTTAAGATCGAT
260 TAAGGGCCGATTCAGGTAGTTTCTTTTCCTTTCTTTTTTGTTGTTGATTATTTTTAAGATCGAT
13008842 TT
1 TT
13008844 GCAAAAATAA
Statistics
Matches: 318, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
323 10 0.03
324 308 0.97
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.26
Consensus pattern (323 bp):
TTTTTTTTTTCAAAGGATCACAAAAAATAAAAAGGGGGGTTCCCTTTTCTCAGCTAGGGTTCCAA
GGCTAGGAACCCCGCCGCCATCACACCTCCCCACTTCCCGGTGGCCAGAGCCATGCGAGGGCGCC
TTCTATCGGCGCATTGAAGCGCGTTCAGAGGTCGAGGCCATGGAACGGGGAAACAAAGTGAAAGA
GAAAAGCTTTGGCCCCTCCCTAAACCCACGACCGGCGACGGTGGAGTACCATCGACGACAGGCCT
AAGGGCCGATTCAGGTAGTTTCTTTTCCTTTCTTTTTTGTTGTTGATTATTTTTAAGATCGAT
Found at i:13010039 original size:49 final size:49
Alignment explanation
Indices: 13009986--13010088 Score: 170
Period size: 49 Copynumber: 2.1 Consensus size: 49
13009976 TATTTAATAA
* * * *
13009986 TAATTTTATACAGTGTTGAGCTTTTGATTCATGATATTGAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
13010035 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
13010084 TAATT
1 TAATT
13010089 GTTTTTTTTC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.50
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
Found at i:13011577 original size:15 final size:16
Alignment explanation
Indices: 13011549--13011578 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13011539 TAAATTCATA
13011549 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
13011565 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
13011579 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:13011598 original size:18 final size:17
Alignment explanation
Indices: 13011570--13011604 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13011560 ATTATTAAGA
*
13011570 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13011587 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13011605 TTAAGAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13011699 original size:15 final size:16
Alignment explanation
Indices: 13011671--13011700 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13011661 TAAATTCATA
13011671 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
13011687 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
13011701 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:13011720 original size:18 final size:17
Alignment explanation
Indices: 13011692--13011726 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13011682 ATTATTAAGA
*
13011692 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13011709 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13011727 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13011726 original size:16 final size:16
Alignment explanation
Indices: 13011692--13011745 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
13011682 ATTATTAAGA
13011692 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
13011709 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
13011725 A-TTTAA-TAATAAT-T
1 ATTTTAATTAA-AATAT
13011739 ATTTTAA
1 ATTTTAA
13011746 ATTATATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.15
15 13 0.38
16 5 0.15
17 5 0.15
18 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:13011797 original size:120 final size:120
Alignment explanation
Indices: 13011473--13013079 Score: 1831
Period size: 120 Copynumber: 13.2 Consensus size: 120
13011463 AAGTAGAATA
* *
13011473 TAAAATATATTTAATAATTATTATTTTAAAATTTATATTTTATAGTATTATAAATTATGATTTTA
1 TAAAATATATTTAATAATAATTATTTT-AAA-TTATATTTTATAGTATTATATATTATGATTTTA
13011538 GTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
64 GTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
* *
13011595 TAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGTATTATATATTATGATTTTA
1 TAAAATATATTTAATAATAATTATTTT--AAATTATATTTTATAGTATTATATATTATGATTTTA
13011660 GTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
64 GTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
13011717 TAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 TAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
13011782 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
66 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
* * *
13011837 TAAAATATATTTAATAGTAATTATTTTAAATTATATATTT-TA--ATTA-A-AATAT-ATTTAAG
1 TAAAATATATTTAATAATAATTATTTTAAATTATAT-TTTATAGTATTATATATTATGATTTTAG
* * * * * * ** *
13011896 AATAATT-ATTTTAA-AA-ATTATATT-TTATCGTATTATATATTATGATTTTAGTAAATTCAT
65 TA-AATTCA-TATAAGAATATT-TATTATTA-AGAATT-T-TATTA-AATTATA-TATTTTAAT
* * * *
13011956 ATAAGAATATTTATTATTAAGAATT-TTATTAAATTATATATTT-TA--ATTA-A-AATAT-ATT
1 -TAA-AATATAT-TTAATAATAATTATT-TTAAATTATAT-TTTATAGTATTATATATTATGATT
* * *
13012014 TAATAGT-AATT-ATTTTAA-ATTATATATT-TTAATTAA-AA-TATATTTAAGAATA-ATTATT
61 T--TAGTAAATTCA-TATAAGA--ATAT-TTATT-ATTAAGAATTTTA-TTAA-ATTATA-TATT
13012072 TTAA-
116 TTAAT
* * * * * *
13012076 -AAATTATATTTTATCGTATTATATATTATGATTT-TAGTAAATTCATATAAGAATATT-TATTA
1 TAAAATATA-TTTA----ATAATA-ATTAT--TTTAAATTATATT-TTAT-AG--TATTATA-TA
* * * * * * * *
13012138 TTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATT-TTAAATTA
53 TTATG-ATTTTAGTAAATT-CATA---TAA-GAATATTTA-TTATTAAGAATT-TTATTAAATTA
13012202 TAT-TTTATAGTAT
110 TATATTT-TA--AT
* * * * * * *
13012215 TATATATTATGATTT--TAGTAAATTCATATAAGAATATTTATTATTA-AGAATT-T-TATTA-A
1 TA-A-AATAT-ATTTAATAAT-AATT-ATTTTA-AAT-TATATT-TTATAGTATTATATATTATG
* ** * * *
13012274 ATTATA-TATTTTAAT-TAA-AATATAT-TTAAT-AGTAATTATT-TTAAATTATATATTTTAAT
58 ATTTTAGTAAATTCATATAAGAATATTTATTATTAAG-AATT-TTATTAAATTATATATTTTAAT
13012333 TAAAATATATTTAATAATAATTATTTTAAAAATTATATTTTATAGTATTATATATTATGATTTTA
1 TAAAATATATTTAATAATAATTATTTT--AAATTATATTTTATAGTATTATATATTATGATTTTA
*
13012398 GTAAATTCATATAAGAATATTTATTATTACGAATTTTATTAAATTATATATTTTAAT
64 GTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
13012455 TAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 TAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
13012520 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
66 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
13012575 TAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 TAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
*
13012640 AAATTCATATGAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
66 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
13012695 TAAAATATATTTAATAATAATTATTTTAAAATTATATTTTATAGTATTATATATTATGATTTTAG
1 TAAAATATATTTAATAATAATTATTTT-AAATTATATTTTATAGTATTATATATTATGATTTTAG
13012760 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
65 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
13012816 TAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 TAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
13012881 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
66 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
* *
13012936 TAAAATATATTTAATAATAATTGTTTTAAATTATATTTTATAGTATTATATACTATGATTTTAGT
1 TAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
* *
13013001 AAATTCATATAAGAATACTTATTATTGAGAATTTTATTAAATTATATATTTTAAT
66 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
13013056 TAAAATATATTTAATAATAATTAT
1 TAAAATATATTTAATAATAATTAT
13013080 GATAAAATAT
Statistics
Matches: 1304, Mismatches: 92, Indels: 180
0.83 0.06 0.11
Matches are distributed among these distances:
114 9 0.01
115 35 0.03
116 25 0.02
117 23 0.02
118 21 0.02
119 13 0.01
120 630 0.48
121 152 0.12
122 260 0.20
123 13 0.01
124 12 0.01
125 5 0.00
126 4 0.00
128 2 0.00
129 8 0.01
130 5 0.00
131 6 0.00
132 9 0.01
133 5 0.00
134 5 0.00
135 5 0.00
136 23 0.02
137 13 0.01
138 9 0.01
139 1 0.00
140 1 0.00
141 1 0.00
142 8 0.01
143 1 0.00
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (120 bp):
TAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
Found at i:13011819 original size:15 final size:16
Alignment explanation
Indices: 13011791--13011820 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13011781 TAAATTCATA
13011791 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
13011807 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
13011821 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:13011840 original size:18 final size:17
Alignment explanation
Indices: 13011812--13011846 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13011802 ATTATTAAGA
*
13011812 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13011829 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13011847 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13011844 original size:14 final size:14
Alignment explanation
Indices: 13011827--13011894 Score: 59
Period size: 14 Copynumber: 4.6 Consensus size: 14
13011817 ATTAAATTAT
13011827 ATATTTTAATTAAA
1 ATATTTTAATTAAA
13011841 ATATATTTAA-TAGTAA
1 ATAT-TTTAATTA--AA
* *
13011857 TTATTTTAAATT-AT
1 ATATTTT-AATTAAA
13011871 ATATTTTAATTAAA
1 ATATTTTAATTAAA
13011885 ATATATTTAA
1 ATAT-TTTAA
13011895 GAATAATTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 13
0.72 0.07 0.22
Matches are distributed among these distances:
13 4 0.09
14 18 0.42
15 13 0.30
16 7 0.16
17 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (14 bp):
ATATTTTAATTAAA
Found at i:13011846 original size:16 final size:16
Alignment explanation
Indices: 13011812--13011892 Score: 68
Period size: 16 Copynumber: 5.2 Consensus size: 16
13011802 ATTATTAAGA
13011812 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
13011829 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
13011845 A-TTTAA-TAGTAAT-T
1 ATTTTAATTA-AAATAT
13011859 ATTTTAAATT---ATAT
1 ATTTT-AATTAAAATAT
13011873 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
13011889 ATTT
1 ATTT
13011893 AAGAATAATT
Statistics
Matches: 54, Mismatches: 1, Indels: 19
0.73 0.01 0.26
Matches are distributed among these distances:
13 6 0.11
14 10 0.19
15 11 0.20
16 15 0.28
17 6 0.11
18 6 0.11
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:13011874 original size:44 final size:44
Alignment explanation
Indices: 13011818--13011910 Score: 168
Period size: 44 Copynumber: 2.1 Consensus size: 44
13011808 AAGAATTTTA
* *
13011818 TTAAATTATATATTTTAATTAAAATATATTTAATAGTAATTATT
1 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATT
13011862 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATT
1 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATT
13011906 TTAAA
1 TTAAA
13011911 AATTATATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (44 bp):
TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATT
Found at i:13011918 original size:44 final size:44
Alignment explanation
Indices: 13011818--13011922 Score: 158
Period size: 44 Copynumber: 2.4 Consensus size: 44
13011808 AAGAATTTTA
* * *
13011818 TTAAATTATATATTTTAATTAAAATATATTTAATAGTAATTATT
1 TTAAAATATATATTTTAATTAAAATATATTTAAGAATAATTATT
*
13011862 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATT
1 TTAAAATATATATTTTAATTAAAATATATTTAAGAATAATTATT
13011906 TTAAAA-ATTATATTTTA
1 TTAAAATA-TATATTTTA
13011923 TCGTATTATA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
43 1 0.02
44 56 0.98
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (44 bp):
TTAAAATATATATTTTAATTAAAATATATTTAAGAATAATTATT
Found at i:13011970 original size:166 final size:166
Alignment explanation
Indices: 13011698--13012204 Score: 973
Period size: 166 Copynumber: 3.1 Consensus size: 166
13011688 AAGAATTTTA
* *
13011698 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTT--AAATTATATTTTATAGT
1 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGT
13011761 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
66 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
13011826 TATATTTTAATTAAAATATATTTAATAGTAATTATT
131 TATATTTTAATTAAAATATATTTAATAGTAATTATT
13011862 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGT
1 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGT
13011927 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
66 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
13011992 TATATTTTAATTAAAATATATTTAATAGTAATTATT
131 TATATTTTAATTAAAATATATTTAATAGTAATTATT
13012028 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGT
1 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGT
13012093 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
66 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
*
13012158 TATATTTTAATTAAAATATATTTAATAATAATTATT
131 TATATTTTAATTAAAATATATTTAATAGTAATTATT
13012194 TTAAATTATAT
1 TTAAATTATAT
13012205 TTTATAGTAT
Statistics
Matches: 338, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
164 45 0.13
166 293 0.87
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (166 bp):
TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGT
ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
TATATTTTAATTAAAATATATTTAATAGTAATTATT
Found at i:13011985 original size:15 final size:16
Alignment explanation
Indices: 13011957--13011986 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13011947 TAAATTCATA
13011957 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
13011973 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
13011987 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:13012006 original size:18 final size:17
Alignment explanation
Indices: 13011978--13012012 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13011968 ATTATTAAGA
*
13011978 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13011995 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13012013 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13012010 original size:14 final size:14
Alignment explanation
Indices: 13011993--13012060 Score: 59
Period size: 14 Copynumber: 4.6 Consensus size: 14
13011983 ATTAAATTAT
13011993 ATATTTTAATTAAA
1 ATATTTTAATTAAA
13012007 ATATATTTAA-TAGTAA
1 ATAT-TTTAATTA--AA
* *
13012023 TTATTTTAAATT-AT
1 ATATTTT-AATTAAA
13012037 ATATTTTAATTAAA
1 ATATTTTAATTAAA
13012051 ATATATTTAA
1 ATAT-TTTAA
13012061 GAATAATTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 13
0.72 0.07 0.22
Matches are distributed among these distances:
13 4 0.09
14 18 0.42
15 13 0.30
16 7 0.16
17 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (14 bp):
ATATTTTAATTAAA
Found at i:13012012 original size:16 final size:16
Alignment explanation
Indices: 13011978--13012058 Score: 68
Period size: 16 Copynumber: 5.2 Consensus size: 16
13011968 ATTATTAAGA
13011978 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
13011995 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
13012011 A-TTTAA-TAGTAAT-T
1 ATTTTAATTA-AAATAT
13012025 ATTTTAAATT---ATAT
1 ATTTT-AATTAAAATAT
13012039 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
13012055 ATTT
1 ATTT
13012059 AAGAATAATT
Statistics
Matches: 54, Mismatches: 1, Indels: 19
0.73 0.01 0.26
Matches are distributed among these distances:
13 6 0.11
14 10 0.19
15 11 0.20
16 15 0.28
17 6 0.11
18 6 0.11
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:13012040 original size:44 final size:44
Alignment explanation
Indices: 13011984--13012076 Score: 168
Period size: 44 Copynumber: 2.1 Consensus size: 44
13011974 AAGAATTTTA
* *
13011984 TTAAATTATATATTTTAATTAAAATATATTTAATAGTAATTATT
1 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATT
13012028 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATT
1 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATT
13012072 TTAAA
1 TTAAA
13012077 AATTATATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (44 bp):
TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATT
Found at i:13012084 original size:44 final size:44
Alignment explanation
Indices: 13011984--13012088 Score: 158
Period size: 44 Copynumber: 2.4 Consensus size: 44
13011974 AAGAATTTTA
* * *
13011984 TTAAATTATATATTTTAATTAAAATATATTTAATAGTAATTATT
1 TTAAAATATATATTTTAATTAAAATATATTTAAGAATAATTATT
*
13012028 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATT
1 TTAAAATATATATTTTAATTAAAATATATTTAAGAATAATTATT
13012072 TTAAAA-ATTATATTTTA
1 TTAAAATA-TATATTTTA
13012089 TCGTATTATA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
43 1 0.02
44 56 0.98
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (44 bp):
TTAAAATATATATTTTAATTAAAATATATTTAAGAATAATTATT
Found at i:13012151 original size:15 final size:16
Alignment explanation
Indices: 13012123--13012152 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13012113 TAAATTCATA
13012123 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
13012139 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
13012153 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:13012172 original size:18 final size:17
Alignment explanation
Indices: 13012144--13012178 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13012134 ATTATTAAGA
*
13012144 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13012161 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13012179 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13012178 original size:16 final size:16
Alignment explanation
Indices: 13012144--13012197 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
13012134 ATTATTAAGA
13012144 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
13012161 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
13012177 A-TTTAA-TAATAAT-T
1 ATTTTAATTAA-AATAT
13012191 ATTTTAA
1 ATTTTAA
13012198 ATTATATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.15
15 13 0.38
16 5 0.15
17 5 0.15
18 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:13012202 original size:286 final size:286
Alignment explanation
Indices: 13011862--13012610 Score: 1426
Period size: 286 Copynumber: 2.6 Consensus size: 286
13011852 AGTAATTATT
* *
13011862 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTT--AAATTATATTTTATAGT
13011927 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
64 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
13011992 TATATTTTAATTAAAATATATTTAATAGTAATTATTTTAAATTATATATTTTAATTAAAATATAT
129 TATATTTTAATTAAAATATATTTAATAGTAATTATTTTAAATTATATATTTTAATTAAAATATAT
*
13012057 TTAAGAATAATTATTTTAAAAATTATATTTTATCGTATTATATATTATGATTTTAGTAAATTCAT
194 TTAAGAATAATTATTTTAAAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCAT
13012122 ATAAGAATATTTATTATTAAGAATTTTA
259 ATAAGAATATTTATTATTAAGAATTTTA
13012150 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTAT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTAT
13012215 TATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATA
66 TATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATA
13012280 TATTTTAATTAAAATATATTTAATAGTAATTATTTTAAATTATATATTTTAATTAAAATATATTT
131 TATTTTAATTAAAATATATTTAATAGTAATTATTTTAAATTATATATTTTAATTAAAATATATTT
*
13012345 AATAATAATTATTTTAAAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATAT
196 AAGAATAATTATTTTAAAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATAT
*
13012410 AAGAATATTTATTATTACGAATTTTA
261 AAGAATATTTATTATTAAGAATTTTA
13012436 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTAT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTAT
13012501 TATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATA
66 TATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATA
*
13012566 TATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATAT
131 TATTTTAATTAAAATATATTTAATAGTAATTATTTTAAATTATAT
13012611 TTTATAGTAT
Statistics
Matches: 455, Mismatches: 6, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
286 410 0.90
288 45 0.10
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (286 bp):
TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTAT
TATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATA
TATTTTAATTAAAATATATTTAATAGTAATTATTTTAAATTATATATTTTAATTAAAATATATTT
AAGAATAATTATTTTAAAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATAT
AAGAATATTTATTATTAAGAATTTTA
Found at i:13012206 original size:452 final size:452
Alignment explanation
Indices: 13011576--13012490 Score: 1794
Period size: 452 Copynumber: 2.0 Consensus size: 452
13011566 AAGAATTTTA
13011576 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGT
1 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGT
13011641 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
66 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
13011706 TATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATT
131 TATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATT
13011771 ATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAA
196 ATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAA
13011836 TTAAAATATATTTAATAGTAATTATTTTAAATTATATATTTTAATTAAAATATATTTAAGAATAA
261 TTAAAATATATTTAATAGTAATTATTTTAAATTATATATTTTAATTAAAATATATTTAAGAATAA
*
13011901 TTATTTTAAAAATTATATTTTATCGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
326 TTATTTTAAAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
*
13011966 TTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAGTAATTATT
391 TTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATT
13012028 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGT
1 TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGT
13012093 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
66 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
13012158 TATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATT
131 TATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATT
13012223 ATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAA
196 ATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAA
*
13012288 TTAAAATATATTTAATAGTAATTATTTTAAATTATATATTTTAATTAAAATATATTTAATAATAA
261 TTAAAATATATTTAATAGTAATTATTTTAAATTATATATTTTAATTAAAATATATTTAAGAATAA
13012353 TTATTTTAAAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
326 TTATTTTAAAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
*
13012418 TTATTATTACGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATT
391 TTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATT
13012480 TTAAATTATAT
1 TTAAATTATAT
13012491 TTTATAGTAT
Statistics
Matches: 459, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
452 459 1.00
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (452 bp):
TTAAATTATATATTTTAATTAAAATATATTTAAGAATAATTATTTTAAAAATTATATTTTATCGT
ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
TATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATT
ATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAA
TTAAAATATATTTAATAGTAATTATTTTAAATTATATATTTTAATTAAAATATATTTAAGAATAA
TTATTTTAAAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
TTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATT
Found at i:13012271 original size:15 final size:16
Alignment explanation
Indices: 13012243--13012272 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13012233 TAAATTCATA
13012243 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
13012259 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
13012273 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:13012292 original size:18 final size:17
Alignment explanation
Indices: 13012264--13012298 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13012254 ATTATTAAGA
*
13012264 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13012281 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13012299 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13012296 original size:14 final size:14
Alignment explanation
Indices: 13012279--13012361 Score: 64
Period size: 14 Copynumber: 5.6 Consensus size: 14
13012269 ATTAAATTAT
13012279 ATATTTTAATTAAA
1 ATATTTTAATTAAA
13012293 ATATATTTAA-TAGTAA
1 ATAT-TTTAATTA--AA
* *
13012309 TTATTTTAAATT-AT
1 ATATTTT-AATTAAA
13012323 ATATTTTAATTAAA
1 ATATTTTAATTAAA
13012337 ATATATTTAA-TAATA
1 ATAT-TTTAATTAA-A
13012352 ATTATTTTAA
1 A-TATTTTAA
13012362 AAATTATATT
Statistics
Matches: 56, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
13 4 0.07
14 21 0.38
15 20 0.36
16 10 0.18
17 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (14 bp):
ATATTTTAATTAAA
Found at i:13012326 original size:44 final size:44
Alignment explanation
Indices: 13012270--13012490 Score: 189
Period size: 44 Copynumber: 5.2 Consensus size: 44
13012260 AAGAATTTTA
*
13012270 TTAAATTATATATTTTAATTAAAATATATTTAATAGTAATTATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATT
13012314 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATT
* * ** * *
13012358 TTAAA-AATTATATTTTATAGTATTATATA-TT-ATGAT--TT-TA
1 TTAAATTA-TATATTTTA-ATTAAAATATATTTAATAATAATTATT
* * * * * * **
13012398 GTAAATT-CATA---TAA-GAATATTTA-TTATTACGAATT-TT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATT
13012435 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATT
1 -TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATT
13012480 TTAAATTATAT
1 TTAAATTATAT
13012491 TTTATAGTAT
Statistics
Matches: 137, Mismatches: 26, Indels: 28
0.72 0.14 0.15
Matches are distributed among these distances:
34 8 0.06
35 2 0.01
36 2 0.01
37 3 0.02
38 6 0.04
39 6 0.04
40 5 0.04
41 2 0.01
42 3 0.02
43 11 0.08
44 79 0.58
45 10 0.07
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.52
Consensus pattern (44 bp):
TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATT
Found at i:13012410 original size:166 final size:164
Alignment explanation
Indices: 13011818--13012490 Score: 652
Period size: 166 Copynumber: 4.1 Consensus size: 164
13011808 AAGAATTTTA
*
13011818 TTAAATTATATATTTTAATTAAAATATATTTAATAGTAATTATTTTAAATTATATATTT-TA--A
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATAT-TTTATAGTA
* * * * * *
13011880 TTA-A-AATAT-ATTTAAGAATAATT-ATTTTAA-AA-ATTATATT-TTATCGTATTATATATTA
65 TTATATATTATGATTTTAGTA-AATTCA-TATAAGAATATT-TATTATTA-AGAATT-T-TATTA
* * ** * * * *
13011938 TGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATT-TT
124 -AATTATA-TATTTTAAT-TAA-AATATAT-TTAATAATAATTATT
*
13011983 ATTAAATTATATATTTTAATTAAAATATATTTAATAGTAATTATTTTAAATTATATATTT-TA--
1 -TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATAT-TTTATAGT
* * * * * *
13012045 ATTA-A-AATAT-ATTTAAGAATAATT-ATTTTAA-AA-ATTATATT-TTATCGTATTATATATT
64 ATTATATATTATGATTTTAGTA-AATTCA-TATAAGAATATT-TATTATTA-AGAATT-T-TATT
* * ** * * * *
13012103 ATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATT-TT
123 A-AATTATA-TATTTTAAT-TAA-AATATAT-TTAATAATAATTATT
13012149 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
1 -TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
13012214 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTAT
65 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTAT
*
13012279 ATATTTTAATTAAAATATATTTAATAGTAATTATT
130 ATATTTTAATTAAAATATATTTAATAATAATTATT
13012314 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAAAATTATATTTTATAGT
1 TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTT--AAATTATATTTTATAGT
*
13012379 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTACGAATTTTATTAAATTA
64 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTA
13012444 TATATTTTAATTAAAATATATTTAATAATAATTATT
129 TATATTTTAATTAAAATATATTTAATAATAATTATT
13012480 TTAAATTATAT
1 TTAAATTATAT
13012491 TTTATAGTAT
Statistics
Matches: 476, Mismatches: 18, Indels: 26
0.92 0.03 0.05
Matches are distributed among these distances:
164 55 0.12
165 11 0.02
166 352 0.74
167 6 0.01
168 9 0.02
169 6 0.01
170 13 0.03
171 18 0.04
172 6 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (164 bp):
TTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTAT
TATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATA
TATTTTAATTAAAATATATTTAATAATAATTATT
Found at i:13012458 original size:18 final size:17
Alignment explanation
Indices: 13012430--13012464 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13012420 ATTATTACGA
*
13012430 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13012447 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13012465 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13012464 original size:16 final size:16
Alignment explanation
Indices: 13012430--13012483 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
13012420 ATTATTACGA
13012430 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
13012447 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
13012463 A-TTTAA-TAATAAT-T
1 ATTTTAATTAA-AATAT
13012477 ATTTTAA
1 ATTTTAA
13012484 ATTATATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.15
15 13 0.38
16 5 0.15
17 5 0.15
18 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:13012557 original size:15 final size:16
Alignment explanation
Indices: 13012529--13012558 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13012519 TAAATTCATA
13012529 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
13012545 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
13012559 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:13012578 original size:18 final size:17
Alignment explanation
Indices: 13012550--13012584 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13012540 ATTATTAAGA
*
13012550 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13012567 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13012585 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13012584 original size:16 final size:16
Alignment explanation
Indices: 13012550--13012603 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
13012540 ATTATTAAGA
13012550 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
13012567 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
13012583 A-TTTAA-TAATAAT-T
1 ATTTTAATTAA-AATAT
13012597 ATTTTAA
1 ATTTTAA
13012604 ATTATATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.15
15 13 0.38
16 5 0.15
17 5 0.15
18 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:13012698 original size:18 final size:17
Alignment explanation
Indices: 13012670--13012704 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13012660 ATTATTAAGA
*
13012670 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13012687 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13012705 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13012704 original size:16 final size:16
Alignment explanation
Indices: 13012670--13012723 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
13012660 ATTATTAAGA
13012670 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
13012687 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
13012703 A-TTTAA-TAATAAT-T
1 ATTTTAATTAA-AATAT
13012717 ATTTTAA
1 ATTTTAA
13012724 AATTATATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.15
15 13 0.38
16 5 0.15
17 5 0.15
18 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:13012722 original size:15 final size:14
Alignment explanation
Indices: 13012685--13012735 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
13012675 ATTAAATTAT
13012685 ATATTTTAATTAA-A
1 ATATTTTAA-TAATA
13012699 ATATATTTAATAATA
1 ATAT-TTTAATAATA
*
13012714 ATTATTTTAA-AATT
1 A-TATTTTAATAATA
13012728 ATATTTTA
1 ATATTTTA
13012736 TAGTATTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
13 7 0.21
14 11 0.33
15 12 0.36
16 3 0.09
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATATTTTAATAATA
Found at i:13012798 original size:15 final size:16
Alignment explanation
Indices: 13012770--13012799 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13012760 TAAATTCATA
13012770 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
13012786 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
13012800 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:13012819 original size:18 final size:17
Alignment explanation
Indices: 13012791--13012825 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13012781 ATTATTAAGA
*
13012791 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13012808 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13012826 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13012825 original size:16 final size:16
Alignment explanation
Indices: 13012791--13012844 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
13012781 ATTATTAAGA
13012791 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
13012808 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
13012824 A-TTTAA-TAATAAT-T
1 ATTTTAATTAA-AATAT
13012838 ATTTTAA
1 ATTTTAA
13012845 ATTATATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.15
15 13 0.38
16 5 0.15
17 5 0.15
18 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:13012918 original size:15 final size:16
Alignment explanation
Indices: 13012890--13012919 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
13012880 TAAATTCATA
13012890 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
13012906 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
13012920 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:13012939 original size:18 final size:17
Alignment explanation
Indices: 13012911--13012945 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13012901 ATTATTAAGA
*
13012911 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13012928 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13012946 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13013059 original size:18 final size:17
Alignment explanation
Indices: 13013031--13013065 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13013021 ATTATTGAGA
*
13013031 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13013048 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13013066 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13026384 original size:16 final size:16
Alignment explanation
Indices: 13026353--13026388 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
13026343 ATGCGAAGAA
13026353 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
13026369 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
13026385 TATT
1 TATT
13026389 GAAATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:13030718 original size:38 final size:38
Alignment explanation
Indices: 13030673--13030755 Score: 166
Period size: 38 Copynumber: 2.2 Consensus size: 38
13030663 GTTTGTATGT
13030673 ATGCATAAATAAATTATAAAAATATATGTACAAGCATA
1 ATGCATAAATAAATTATAAAAATATATGTACAAGCATA
13030711 ATGCATAAATAAATTATAAAAATATATGTACAAGCATA
1 ATGCATAAATAAATTATAAAAATATATGTACAAGCATA
13030749 ATGCATA
1 ATGCATA
13030756 TATATAGATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.29
Consensus pattern (38 bp):
ATGCATAAATAAATTATAAAAATATATGTACAAGCATA
Found at i:13030756 original size:21 final size:21
Alignment explanation
Indices: 13030694--13030758 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 21
13030684 AATTATAAAA
13030694 ATATATGTACAAGCATAATGC
1 ATATATGTACAAGCATAATGC
* ** **
13030715 ATA-A-ATA-AATTATAA-AA
1 ATATATGTACAAGCATAATGC
13030732 ATATATGTACAAGCATAATGC
1 ATATATGTACAAGCATAATGC
13030753 ATATAT
1 ATATAT
13030759 ATAGATATAC
Statistics
Matches: 30, Mismatches: 10, Indels: 8
0.62 0.21 0.17
Matches are distributed among these distances:
17 3 0.10
18 7 0.23
19 4 0.13
20 7 0.23
21 9 0.30
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (21 bp):
ATATATGTACAAGCATAATGC
Found at i:13036888 original size:20 final size:20
Alignment explanation
Indices: 13036851--13036891 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
13036841 TTAAAAGGCA
* *
13036851 TATATTTATTCATCTAATAT
1 TATAATTATTCAACTAATAT
*
13036871 TATAATTATTCAAGTAATAT
1 TATAATTATTCAACTAATAT
13036891 T
1 T
13036892 GTTTGAATAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.51
Consensus pattern (20 bp):
TATAATTATTCAACTAATAT
Found at i:13040434 original size:12 final size:12
Alignment explanation
Indices: 13040417--13040444 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
13040407 ACATTGGCTC
13040417 TATTTCTTATTT
1 TATTTCTTATTT
13040429 TATTTCTTATTT
1 TATTTCTTATTT
13040441 TATT
1 TATT
13040445 ATATTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (12 bp):
TATTTCTTATTT
Found at i:13083120 original size:17 final size:17
Alignment explanation
Indices: 13083100--13083137 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
13083090 TAAAAAAATT
*
13083100 ATAAAAA-TTTTAAAACA
1 ATAAAAAGTATTAAAA-A
13083117 ATAAAAAGTATTAAAAA
1 ATAAAAAGTATTAAAAA
13083134 ATAA
1 ATAA
13083138 TAAAACTCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (17 bp):
ATAAAAAGTATTAAAAA
Found at i:13089760 original size:33 final size:33
Alignment explanation
Indices: 13089718--13089788 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
13089708 ATATCATGCA
* *
13089718 TACCCTCTTAGGCTCAACACGTATTCTTAGAGT
1 TACCCTCTTAGGCTCAACACGAATCCTTAGAGT
* *
13089751 TACCCTCTTAGGCTTAACATGAATCCTTAGAGT
1 TACCCTCTTAGGCTCAACACGAATCCTTAGAGT
13089784 TACCC
1 TACCC
13089789 CTGCTAAGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.32
Consensus pattern (33 bp):
TACCCTCTTAGGCTCAACACGAATCCTTAGAGT
Found at i:13089847 original size:16 final size:16
Alignment explanation
Indices: 13089828--13089883 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
13089818 GCGAGGAGGT
*
13089828 GAGCTAGTAGAGTGAC
1 GAGCTAGTAGAGTGGC
* *
13089844 GAGCTAGCAGAGTGGG
1 GAGCTAGTAGAGTGGC
*
13089860 GAGCTAGTAGAGTGGT
1 GAGCTAGTAGAGTGGC
13089876 GAGCTAGT
1 GAGCTAGT
13089884 CAGGAGATAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.27, C:0.11, G:0.43, T:0.20
Consensus pattern (16 bp):
GAGCTAGTAGAGTGGC
Found at i:13089848 original size:32 final size:32
Alignment explanation
Indices: 13089812--13089882 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
13089802 ATGAGGTAGT
13089812 GAGCTAGC-GAG-GAGGTGAGCTAGTAGAGTGAC
1 GAGCTAGCAGAGTG-GG-GAGCTAGTAGAGTGAC
**
13089844 GAGCTAGCAGAGTGGGGAGCTAGTAGAGTGGT
1 GAGCTAGCAGAGTGGGGAGCTAGTAGAGTGAC
13089876 GAGCTAG
1 GAGCTAG
13089883 TCAGGAGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 29 0.83
33 5 0.14
34 1 0.03
ACGTcount: A:0.27, C:0.11, G:0.45, T:0.17
Consensus pattern (32 bp):
GAGCTAGCAGAGTGGGGAGCTAGTAGAGTGAC
Found at i:13091022 original size:30 final size:30
Alignment explanation
Indices: 13090966--13091023 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
13090956 CACAGGCTGG
* **
13090966 CACATGGGTGTGTGTCCAGCTTGTGTGGTA
1 CACATGGGTGTGTATCCAGCCCGTGTGGTA
*
13090996 CACATGGGTGTGTATCCATCCCGTGTGG
1 CACATGGGTGTGTATCCAGCCCGTGTGG
13091024 AAATGCCCAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.14, C:0.21, G:0.34, T:0.31
Consensus pattern (30 bp):
CACATGGGTGTGTATCCAGCCCGTGTGGTA
Found at i:13092778 original size:23 final size:23
Alignment explanation
Indices: 13092757--13092844 Score: 74
Period size: 24 Copynumber: 3.6 Consensus size: 23
13092747 GAAGTCTAAG
13092757 AAAATAAAAATTAAACAACTAAAA
1 AAAATAAAAA-TAAACAACTAAAA
13092781 AAAATAAAAATAAACATAAACATAAAATA
1 AAAATAAAAATAAAC---AAC-T-AAA-A
*
13092810 AAAAGAAAAAT-AA-AACTAAAA
1 AAAATAAAAATAAACAACTAAAA
13092831 AGAAA-AAAAATAAA
1 A-AAATAAAAATAAA
13092845 ATCAATGATC
Statistics
Matches: 55, Mismatches: 1, Indels: 18
0.74 0.01 0.24
Matches are distributed among these distances:
21 8 0.15
22 8 0.15
23 6 0.11
24 13 0.24
26 3 0.05
27 1 0.02
28 5 0.09
29 11 0.20
ACGTcount: A:0.78, C:0.06, G:0.02, T:0.14
Consensus pattern (23 bp):
AAAATAAAAATAAACAACTAAAA
Found at i:13092788 original size:24 final size:23
Alignment explanation
Indices: 13092757--13092823 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 23
13092747 GAAGTCTAAG
13092757 AAAATAAAAATTAAACAACTAAA-A-
1 AAAATAAAAA-TAAAC-A-TAAACAT
13092781 AAAATAAAAATAAACATAAACAT
1 AAAATAAAAATAAACATAAACAT
* *
13092804 AAAATAAAAAGAAAAATAAA
1 AAAATAAAAATAAACATAAA
13092824 ACTAAAAAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
21 4 0.10
22 2 0.05
23 23 0.59
24 10 0.26
ACGTcount: A:0.78, C:0.06, G:0.01, T:0.15
Consensus pattern (23 bp):
AAAATAAAAATAAACATAAACAT
Found at i:13092800 original size:29 final size:28
Alignment explanation
Indices: 13092757--13092845 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 28
13092747 GAAGTCTAAG
*
13092757 AAAATAAAAATTAAACAACTAAAAAAAATA
1 AAAAT-AAAACTAAACAA-TAAAAAAAATA
*
13092787 AAAAT-AAACATAAAC-ATAAAATAAAAAGA
1 AAAATAAAAC-TAAACAAT-AAA-AAAAATA
*
13092816 AAAATAAAACTAAA-AAGAAAAAAAATA
1 AAAATAAAACTAAACAATAAAAAAAATA
13092843 AAA
1 AAA
13092846 TCAATGATCC
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
27 10 0.20
28 10 0.20
29 21 0.42
30 9 0.18
ACGTcount: A:0.79, C:0.06, G:0.02, T:0.13
Consensus pattern (28 bp):
AAAATAAAACTAAACAATAAAAAAAATA
Found at i:13092805 original size:12 final size:11
Alignment explanation
Indices: 13092757--13092845 Score: 65
Period size: 11 Copynumber: 7.8 Consensus size: 11
13092747 GAAGTCTAAG
13092757 AAAATAAAAAT
1 AAAATAAAAAT
* * *
13092768 TAAACAACTAAAA
1 AAAATAA--AAAT
13092781 AAAATAAAAAT
1 AAAATAAAAAT
*
13092792 AAACATAAACAT
1 AAA-ATAAAAAT
*
13092804 AAAATAAAAAGA
1 AAAATAAAAA-T
*
13092816 AAAATAAAACT
1 AAAATAAAAAT
13092827 AAAA-AGAAAA-
1 AAAATA-AAAAT
13092837 AAAATAAAA
1 AAAATAAAA
13092846 TCAATGATCC
Statistics
Matches: 60, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
10 8 0.13
11 25 0.42
12 19 0.32
13 8 0.13
ACGTcount: A:0.79, C:0.06, G:0.02, T:0.13
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:13092831 original size:18 final size:17
Alignment explanation
Indices: 13092780--13092845 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
13092770 AACAACTAAA
* *
13092780 AAAAATAAAAATAAACAT
1 AAAAAT-AAAATAAAAAG
*
13092798 AAACATAAAATAAAAAG
1 AAAAATAAAATAAAAAG
13092815 AAAAATAAAACTAAAAAG
1 AAAAATAAAA-TAAAAAG
13092833 -AAAA-AAAATAAAA
1 AAAAATAAAATAAAA
13092846 TCAATGATCC
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
15 5 0.12
16 4 0.09
17 22 0.51
18 12 0.28
ACGTcount: A:0.80, C:0.05, G:0.03, T:0.12
Consensus pattern (17 bp):
AAAAATAAAATAAAAAG
Found at i:13092845 original size:6 final size:6
Alignment explanation
Indices: 13092780--13092837 Score: 64
Period size: 6 Copynumber: 9.8 Consensus size: 6
13092770 AACAACTAAA
* * * *
13092780 AAAAAT AAAAAT AAACAT AAACAT -AAAAT AAAAAG AAAAAT AAAACT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
13092827 AAAAAG AAAAA
1 AAAAAT AAAAA
13092838 AAATAAAATC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
5 4 0.09
6 40 0.91
ACGTcount: A:0.79, C:0.05, G:0.03, T:0.12
Consensus pattern (6 bp):
AAAAAT
Found at i:13093066 original size:4 final size:4
Alignment explanation
Indices: 13093057--13093111 Score: 53
Period size: 4 Copynumber: 13.8 Consensus size: 4
13093047 TACTAAATGG
*
13093057 AATA AATAA AATA AAT- AA-A AATA AGTA GAATA AGA-A AATA AATA AATA
1 AATA AAT-A AATA AATA AATA AATA AATA -AATA A-ATA AATA AATA AATA
13093105 AATA AAT
1 AATA AAT
13093112 TAAAGAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
3 5 0.12
4 30 0.70
5 8 0.19
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (4 bp):
AATA
Found at i:13093128 original size:8 final size:8
Alignment explanation
Indices: 13093061--13093175 Score: 115
Period size: 8 Copynumber: 13.8 Consensus size: 8
13093051 AAATGGAATA
13093061 AATAAAAT
1 AATAAAAT
13093069 AAATAAAAAT
1 -AAT-AAAAT
*
13093079 AAGTAGAAT
1 AA-TAAAAT
*
13093088 AAGAAAAT
1 AATAAAAT
13093096 AA-ATAAAT
1 AATA-AAAT
*
13093104 AAATAAATT
1 -AATAAAAT
*
13093113 AAAGAAAAT
1 -AATAAAAT
13093122 AATAAAAT
1 AATAAAAT
13093130 AATAAAAT
1 AATAAAAT
*
13093138 ATTAAAAT
1 AATAAAAT
13093146 AATAAAAT
1 AATAAAAT
13093154 AATAAAAT
1 AATAAAAT
*
13093162 GATAAAAT
1 AATAAAAT
13093170 AATAAA
1 AATAAA
13093176 GAATTAAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
7 1 0.01
8 59 0.66
9 23 0.26
10 7 0.08
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.23
Consensus pattern (8 bp):
AATAAAAT
Found at i:13101695 original size:51 final size:51
Alignment explanation
Indices: 13101621--13101818 Score: 240
Period size: 51 Copynumber: 3.9 Consensus size: 51
13101611 ATCAACGATG
* *
13101621 TCCGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCA
1 TCCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCA
* * * * * *
13101672 TCCGATACACGTAGTTGCCTGCACATAGTACTACACACGTGATCGA-AACTA
1 TCCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATTACCA
* * * * *
13101723 TTCGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGA-C-TTATCA
1 TCCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCA
13101772 TTCCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAT
1 -TCCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAT
13101819 CACTTTCACT
Statistics
Matches: 119, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
49 2 0.02
50 38 0.32
51 76 0.64
52 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (51 bp):
TCCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCA
Found at i:13101808 original size:101 final size:102
Alignment explanation
Indices: 13101630--13101814 Score: 302
Period size: 101 Copynumber: 1.8 Consensus size: 102
13101620 GTCCGGTTCA
* *
13101630 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTTGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATTACCATCCGATACACGTAGTAGCCTGCA
13101695 CATAGTACTACACACGTGATCGAAACTATTCGGTACG
66 CATAGTACTACACACGTGATCGAAACTATTCGGTACG
* *
13101732 CATAGTAGCCTGCACATAGTACTACACATGCGA-C-TTATCATTCCGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATTACCA-TCCGATACACGTAGTAGCCTGC
*
13101795 ACATAGTACTACACATGTGA
65 ACATAGTACTACACACGTGA
13101815 CCATCACTTT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
100 5 0.06
101 40 0.52
102 32 0.42
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATTACCATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAACTATTCGGTACG
Found at i:13105972 original size:23 final size:23
Alignment explanation
Indices: 13105946--13105990 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
13105936 ATGTGTACCA
*
13105946 TAAAGGAGTGAGAATGGATCCCT
1 TAAAGGAATGAGAATGGATCCCT
* *
13105969 TAAATGAATGAGAATGTATCCC
1 TAAAGGAATGAGAATGGATCCC
13105991 CCAAGGGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.24
Consensus pattern (23 bp):
TAAAGGAATGAGAATGGATCCCT
Found at i:13106119 original size:23 final size:22
Alignment explanation
Indices: 13106060--13106113 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
13106050 AACGTGAAAA
*
13106060 ATGTATCCCTTAAGGAAATGAG
1 ATGTATCCCATAAGGAAATGAG
*
13106082 ATTGTATCCCATAAGGAAATGTTG
1 A-TGTATCCCATAAGGAAATG-AG
13106106 ATGTATCC
1 ATGTATCC
13106114 TCTAAGAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 1 0.04
23 25 0.89
24 2 0.07
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.31
Consensus pattern (22 bp):
ATGTATCCCATAAGGAAATGAG
Found at i:13109045 original size:24 final size:24
Alignment explanation
Indices: 13109018--13109066 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
13109008 AGTTATACAA
*
13109018 ATCACAAACAAATCAGTCATTTAC
1 ATCACAAACAAATCAATCATTTAC
**
13109042 ATCACGGACAAATCAATCATTTAC
1 ATCACAAACAAATCAATCATTTAC
13109066 A
1 A
13109067 ATCGAGGGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.45, C:0.24, G:0.06, T:0.24
Consensus pattern (24 bp):
ATCACAAACAAATCAATCATTTAC
Found at i:13109103 original size:26 final size:27
Alignment explanation
Indices: 13109027--13109091 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 27
13109017 AATCACAAAC
* * *
13109027 AAATCAGTCATTTAC-ATC-ACGGAC-
1 AAATCAATCATTTACAATCGAGGGGCA
13109051 AAATCAATCATTTACAATCGAGGGGCA
1 AAATCAATCATTTACAATCGAGGGGCA
13109078 AAAT-AATCATTTAC
1 AAATCAATCATTTAC
13109092 CCTCTAGGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 14 0.40
25 3 0.09
26 14 0.40
27 4 0.11
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (27 bp):
AAATCAATCATTTACAATCGAGGGGCA
Found at i:13109188 original size:81 final size:81
Alignment explanation
Indices: 13109087--13109270 Score: 244
Period size: 81 Copynumber: 2.3 Consensus size: 81
13109077 AAAATAATCA
* * * * *
13109087 TTTACCCTCTAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTAC-GATCATTTTACCCTAT
1 TTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAAGGGCATCACAG-TCATTTTACCCTAC
* * *
13109151 GATGGCATTATGGTCAT
65 AAGGGCATTACGGTCAT
* *
13109168 TTTACCCTATGGGGGTATTACGGTCATTTTACCCTACAAGGGCATCACAGTTATTTTACCCTACA
1 TTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAAGGGCATCACAGTCATTTTACCCTACA
13109233 AGGGCATTACGGTCAT
66 AGGGCATTACGGTCAT
* *
13109249 TTTACCCGATAAGGGTATTACG
1 TTTACCCTATAGGGGTATTACG
13109271 ATTATTATAC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 88 0.99
82 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (81 bp):
TTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAAGGGCATCACAGTCATTTTACCCTACA
AGGGCATTACGGTCAT
Found at i:13109262 original size:27 final size:27
Alignment explanation
Indices: 13109099--13109270 Score: 200
Period size: 27 Copynumber: 6.4 Consensus size: 27
13109089 TACCCTCTAG
*
13109099 GGGCATTACGGTCATTTTACCCTACAG
1 GGGCATTACGGTCATTTTACCCTACAA
* **
13109126 GGGCATTACGATCATTTTACCCTATGA
1 GGGCATTACGGTCATTTTACCCTACAA
* * ***
13109153 TGGCATTATGGTCATTTTACCCTATGG
1 GGGCATTACGGTCATTTTACCCTACAA
*
13109180 GGGTATTACGGTCATTTTACCCTACAA
1 GGGCATTACGGTCATTTTACCCTACAA
* * *
13109207 GGGCATCACAGTTATTTTACCCTACAA
1 GGGCATTACGGTCATTTTACCCTACAA
* *
13109234 GGGCATTACGGTCATTTTACCCGATAA
1 GGGCATTACGGTCATTTTACCCTACAA
*
13109261 GGGTATTACG
1 GGGCATTACG
13109271 ATTATTATAC
Statistics
Matches: 121, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 121 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
GGGCATTACGGTCATTTTACCCTACAA
Found at i:13109276 original size:54 final size:54
Alignment explanation
Indices: 13109087--13109281 Score: 203
Period size: 54 Copynumber: 3.6 Consensus size: 54
13109077 AAAATAATCA
* * * *
13109087 TTTACCCTCTAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGATCAT
1 TTTACCCTATAAGGGCATTACGATCATTTTACCCTACAGGGGCATTACGGTCAT
* * * * ** *
13109141 TTTACCCTATGATGGCATTATGGTCATTTTACCCTATGGGGGTATTACGGTCAT
1 TTTACCCTATAAGGGCATTACGATCATTTTACCCTACAGGGGCATTACGGTCAT
* * * *
13109195 TTTACCCTACAAGGGCATCAC-AGTTATTTTACCCTACAAGGGCATTACGGTCAT
1 TTTACCCTATAAGGGCATTACGA-TCATTTTACCCTACAGGGGCATTACGGTCAT
* * * *
13109249 TTTACCCGATAAGGGTATTACGATTATTATACC
1 TTTACCCTATAAGGGCATTACGATCATTTTACC
13109282 TATTTTAGGG
Statistics
Matches: 114, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
54 113 0.99
55 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (54 bp):
TTTACCCTATAAGGGCATTACGATCATTTTACCCTACAGGGGCATTACGGTCAT
Found at i:13121170 original size:43 final size:43
Alignment explanation
Indices: 13121021--13121170 Score: 132
Period size: 42 Copynumber: 3.5 Consensus size: 43
13121011 TATGAGTTAT
*
13121021 CGTGTAAGACCACGTCTAGGAC-GTTGGCATCGAT-TTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACAG-TGGCATCGATATT-AGA-TTA
* * * *
13121065 CGCGTAAGACCATGTCTGGGACA-TCGGCATCG-TA-TACAATTT
1 CGTGTAAGACCACGTCTGGGACAGT-GGCATCGATATTA-GATTA
* *
13121107 TGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACAGTGGCATCGATATTAGATTA
*
13121150 CATGTAAGACCACGTCTGGGA
1 CGTGTAAGACCACGTCTGGGA
13121171 TGTTGGCATT
Statistics
Matches: 84, Mismatches: 13, Indels: 19
0.72 0.11 0.16
Matches are distributed among these distances:
42 29 0.35
43 27 0.32
44 28 0.33
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACAGTGGCATCGATATTAGATTA
Found at i:13121178 original size:43 final size:43
Alignment explanation
Indices: 13121021--13121179 Score: 139
Period size: 43 Copynumber: 3.7 Consensus size: 43
13121011 TATGAGTTAT
*
13121021 CGTGTAAGACCACGTCTAGGACGTTGGCATCGAT-TTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATT-AGA-TTA
* * * * * *
13121065 CGCGTAAGACCATGTCTGGGACATCGGCATCG-TA-TACAATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTA-GATTA
* *
13121107 TGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTAGATTA
* *
13121150 CATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
13121180 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 18, Indels: 17
0.72 0.15 0.14
Matches are distributed among these distances:
42 29 0.33
43 31 0.35
44 29 0.33
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTAGATTA
Found at i:13121388 original size:18 final size:19
Alignment explanation
Indices: 13121353--13121389 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
13121343 CATGACATTG
13121353 AATGAAATGTATGTATACA
1 AATGAAATGTATGTATACA
13121372 AATG-AATGT-TGTGATACA
1 AATGAAATGTATGT-ATACA
13121390 TATGCTCGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.18
18 10 0.59
19 4 0.24
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.32
Consensus pattern (19 bp):
AATGAAATGTATGTATACA
Found at i:13126028 original size:22 final size:22
Alignment explanation
Indices: 13126000--13126045 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
13125990 CCCACATACT
13126000 AGTAAAAAGAAATGTGACCATG
1 AGTAAAAAGAAATGTGACCATG
13126022 AGTAAAAAGAAATGTGACCATG
1 AGTAAAAAGAAATGTGACCATG
13126044 AG
1 AG
13126046 GGCTAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.50, C:0.09, G:0.24, T:0.17
Consensus pattern (22 bp):
AGTAAAAAGAAATGTGACCATG
Found at i:13126356 original size:13 final size:14
Alignment explanation
Indices: 13126340--13126372 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
13126330 TATATTTTTC
13126340 TTTATATAT-AATA
1 TTTATATATAAATA
13126353 TTTATATATCAAATA
1 TTTATATAT-AAATA
13126368 TTTAT
1 TTTAT
13126373 TTCTCCACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
15 9 0.50
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTATATATAAATA
Found at i:13128160 original size:24 final size:24
Alignment explanation
Indices: 13128132--13128183 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
13128122 TTCGTAGGTC
* * * *
13128132 AAATAAATTGTGCTAATCAATGCT
1 AAATAAATTATACTAATAAATACT
*
13128156 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
13128180 AAAT
1 AAAT
13128184 CTTCTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:13129367 original size:6 final size:6
Alignment explanation
Indices: 13129356--13129390 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
13129346 TGCTTGTCTT
13129356 CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCT
1 CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCT
13129391 TCTTTGTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (6 bp):
CCTCTC
Found at i:13136313 original size:13 final size:13
Alignment explanation
Indices: 13136292--13136422 Score: 81
Period size: 13 Copynumber: 9.8 Consensus size: 13
13136282 TTCATAATCT
13136292 ATTTCCATATAACC
1 ATTT-CATATAACC
13136306 GA-TTCATATAACC
1 -ATTTCATATAACC
*
13136319 ATTTCATAT-ATC
1 ATTTCATATAACC
13136331 ATTTTTCATATAACC
1 A--TTTCATATAACC
*
13136346 ATTTCATATATTA-T
1 ATTTCATATA--ACC
* *
13136360 TTTTCATATAATCG
1 ATTTCATATAA-CC
* *
13136374 A-TTCGTATAATC
1 ATTTCATATAACC
***
13136386 ATTTCATATATTT
1 ATTTCATATAACC
13136399 ATTTTCATATAACC
1 A-TTTCATATAACC
13136413 ATTTCATATA
1 ATTTCATATA
13136423 TCATTTTTTT
Statistics
Matches: 91, Mismatches: 15, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
12 6 0.07
13 51 0.56
14 29 0.32
15 5 0.05
ACGTcount: A:0.34, C:0.17, G:0.02, T:0.47
Consensus pattern (13 bp):
ATTTCATATAACC
Found at i:13136344 original size:40 final size:39
Alignment explanation
Indices: 13136280--13136355 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 39
13136270 CCAATGTTCT
13136280 ATTTCATAATCTATTTCCATATAACCGA-TTCATATAACC
1 ATTTCATAATCTATTTCCATATAACC-ATTTCATATAACC
*
13136319 ATTTCATATATC-ATTTTTCATATAACCATTTCATATA
1 ATTTCATA-ATCTA-TTTCCATATAACCATTTCATATA
13136356 TTATTTTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
39 10 0.30
40 23 0.70
ACGTcount: A:0.36, C:0.20, G:0.01, T:0.43
Consensus pattern (39 bp):
ATTTCATAATCTATTTCCATATAACCATTTCATATAACC
Found at i:13136382 original size:27 final size:27
Alignment explanation
Indices: 13136308--13136370 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
13136298 ATATAACCGA
13136308 TTCATATAACCATTTCATATATCATTT
1 TTCATATAACCATTTCATATATCATTT
*
13136335 TTCATATAACCATTTCATATATTATTT
1 TTCATATAACCATTTCATATATCATTT
13136362 TTCATATAA
1 TTCATATAA
13136371 TCGATTCGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.35, C:0.16, G:0.00, T:0.49
Consensus pattern (27 bp):
TTCATATAACCATTTCATATATCATTT
Found at i:13136390 original size:67 final size:67
Alignment explanation
Indices: 13136280--13136430 Score: 209
Period size: 67 Copynumber: 2.3 Consensus size: 67
13136270 CCAATGTTCT
*
13136280 ATTTCATA-ATCTA-TTTCCATATAACCGATTCATATAACCATTTCATATATCAT-TTTTCATAT
1 ATTTCATATAT-TATTTTTCATATAACCGATTCATATAACCATTTCATATAT-ATATTTTCATAT
13136342 AACC
64 AACC
* * * *
13136346 ATTTCATATATTATTTTTCATATAATCGATTCGTATAATCATTTCATATATTTATTTTCATATAA
1 ATTTCATATATTATTTTTCATATAACCGATTCATATAACCATTTCATATATATATTTTCATATAA
13136411 CC
66 CC
*
13136413 ATTTCATATATCATTTTT
1 ATTTCATATATTATTTTT
13136431 TTCACCCGAT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
66 11 0.14
67 65 0.86
ACGTcount: A:0.33, C:0.17, G:0.02, T:0.48
Consensus pattern (67 bp):
ATTTCATATATTATTTTTCATATAACCGATTCATATAACCATTTCATATATATATTTTCATATAA
CC
Found at i:13139080 original size:21 final size:21
Alignment explanation
Indices: 13139056--13139133 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
13139046 GTGGAAAAGG
* *
13139056 GCACACACCCATGTGCAAGAA
1 GCACACGCCCGTGTGCAAGAA
*
13139077 GCACACGCCTGTGTGCAAGAA
1 GCACACGCCCGTGTGCAAGAA
* *
13139098 GCACACGCCTGTGTACAAGAA
1 GCACACGCCCGTGTGCAAGAA
13139119 GCACACGCCCGTGTG
1 GCACACGCCCGTGTG
13139134 GAGGAGACAC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.29, C:0.32, G:0.26, T:0.13
Consensus pattern (21 bp):
GCACACGCCCGTGTGCAAGAA
Found at i:13144245 original size:57 final size:57
Alignment explanation
Indices: 13144184--13144316 Score: 185
Period size: 57 Copynumber: 2.3 Consensus size: 57
13144174 GCCATTATTC
* *
13144184 ACATTTTGACAACATAAATATACGCATTAAGAGACATTATGACAACAACTATAAATT
1 ACATTTAGACAACATAAATATACACATTAAGAGACATTATGACAACAACTATAAATT
* * * * * *
13144241 ACATTTGGACAACATAAATATGCATATTAATAGACATTTTGACAGCAACTATAAATT
1 ACATTTAGACAACATAAATATACACATTAAGAGACATTATGACAACAACTATAAATT
*
13144298 ACATTAAGACAACATAAAT
1 ACATTTAGACAACATAAAT
13144317 GTAGAAATAT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 67 1.00
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (57 bp):
ACATTTAGACAACATAAATATACACATTAAGAGACATTATGACAACAACTATAAATT
Found at i:13145887 original size:40 final size:41
Alignment explanation
Indices: 13145814--13145895 Score: 157
Period size: 40 Copynumber: 2.0 Consensus size: 41
13145804 ATCTTATACA
13145814 TACGCGAGGAAGGTAATAAAAAAAATAAAGAATATAAGTTC
1 TACGCGAGGAAGGTAATAAAAAAAATAAAGAATATAAGTTC
13145855 TACGCGAGGAAGGTAAT-AAAAAAATAAAGAATATAAGTTC
1 TACGCGAGGAAGGTAATAAAAAAAATAAAGAATATAAGTTC
13145895 T
1 T
13145896 TCTTTACTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 24 0.59
41 17 0.41
ACGTcount: A:0.52, C:0.07, G:0.20, T:0.21
Consensus pattern (41 bp):
TACGCGAGGAAGGTAATAAAAAAAATAAAGAATATAAGTTC
Found at i:13155562 original size:9 final size:9
Alignment explanation
Indices: 13155544--13155580 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
13155534 TATAGTTTGA
*
13155544 TATTCAAAT
1 TATTCGAAT
13155553 TATTCGAAT
1 TATTCGAAT
*
13155562 TATTCGAGT
1 TATTCGAAT
13155571 TATTCGAAT
1 TATTCGAAT
13155580 T
1 T
13155581 CAAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:13155955 original size:18 final size:18
Alignment explanation
Indices: 13155920--13155957 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
13155910 ACTCAACCAC
13155920 ATTAAACACAACAAACAT
1 ATTAAACACAACAAACAT
*
13155938 ATTAAGACAC-ACATACAT
1 ATTAA-ACACAACAAACAT
13155956 AT
1 AT
13155958 ACTTATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.55, C:0.21, G:0.03, T:0.21
Consensus pattern (18 bp):
ATTAAACACAACAAACAT
Found at i:13156626 original size:25 final size:24
Alignment explanation
Indices: 13156598--13156661 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 24
13156588 CGGACACATA
*
13156598 AACGGGAAGCTCATATGAGCCATGT
1 AACGGGAAGCTCATAAGAGCCAT-T
* **
13156623 AACGAGAAGCTCCGAAGAGCCATT
1 AACGGGAAGCTCATAAGAGCCATT
13156647 AACGGGAAGCTCATA
1 AACGGGAAGCTCATA
13156662 CTAGCCAATA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
24 13 0.41
25 19 0.59
ACGTcount: A:0.36, C:0.22, G:0.27, T:0.16
Consensus pattern (24 bp):
AACGGGAAGCTCATAAGAGCCATT
Found at i:13156667 original size:24 final size:24
Alignment explanation
Indices: 13156598--13156668 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 24
13156588 CGGACACATA
13156598 AACGGGAAGCTCATATGAGCCATGT
1 AACGGGAAGCTCATAT-AGCCATGT
* *
13156623 AACGAGAAGCTCCGA-AGAGCCAT-T
1 AACGGGAAGCT-C-ATATAGCCATGT
13156647 AACGGGAAGCTCATACTAGCCA
1 AACGGGAAGCTCATA-TAGCCA
13156669 ATATTGGGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
22 1 0.03
23 2 0.05
24 16 0.42
25 16 0.42
26 2 0.05
27 1 0.03
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.15
Consensus pattern (24 bp):
AACGGGAAGCTCATATAGCCATGT
Found at i:13168141 original size:24 final size:24
Alignment explanation
Indices: 13168089--13168151 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
13168079 ATACATGTAT
* * * *
13168089 GCTCATACGAGCTCATAATCGGTAT
1 GCTCTTACGAGCT-GTAATCGATAA
13168114 GCTCTTACGAGCTGTAATCGATAA
1 GCTCTTACGAGCTGTAATCGATAA
13168138 GCTCCTT-CGAGCTG
1 GCT-CTTACGAGCTG
13168152 ATTAGCGGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 18 0.55
25 15 0.45
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (24 bp):
GCTCTTACGAGCTGTAATCGATAA
Found at i:13170308 original size:13 final size:13
Alignment explanation
Indices: 13170290--13170314 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13170280 AGTTATGGAC
13170290 AATTTTTAATTAA
1 AATTTTTAATTAA
13170303 AATTTTTAATTA
1 AATTTTTAATTA
13170315 CTAATAAGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATTTTTAATTAA
Found at i:13173354 original size:22 final size:22
Alignment explanation
Indices: 13173329--13173373 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
13173319 AGTAAAAAGA
13173329 AAGAAATTTTATAATAAATAAT
1 AAGAAATTTTATAATAAATAAT
13173351 AAGAAATTTTATAATAAATAAT
1 AAGAAATTTTATAATAAATAAT
13173373 A
1 A
13173374 TAAAAATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (22 bp):
AAGAAATTTTATAATAAATAAT
Found at i:13173381 original size:15 final size:17
Alignment explanation
Indices: 13173363--13173395 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
13173353 GAAATTTTAT
13173363 AATAAAT-AAT-ATAAA
1 AATAAATCAATAATAAA
13173378 AATAAATCAATAATAAA
1 AATAAATCAATAATAAA
13173395 A
1 A
13173396 TATGAAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (17 bp):
AATAAATCAATAATAAA
Found at i:13179203 original size:14 final size:17
Alignment explanation
Indices: 13179163--13179197 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
13179153 GTGAATGGTA
13179163 AATGAAGATGTGAGCTTG
1 AATGAA-ATGTGAGCTTG
13179181 AATGAAATGTGA-CTTG
1 AATGAAATGTGAGCTTG
13179197 A
1 A
13179198 GAAATGAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 6 0.35
18 6 0.35
ACGTcount: A:0.37, C:0.06, G:0.29, T:0.29
Consensus pattern (17 bp):
AATGAAATGTGAGCTTG
Found at i:13180729 original size:16 final size:15
Alignment explanation
Indices: 13180699--13180737 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
13180689 ATATAATATT
* *
13180699 ATTTTATTAACTTTA
1 ATTTAATTAAATTTA
13180714 ATTGTAATTAAATTTA
1 ATT-TAATTAAATTTA
13180730 ATTTAATT
1 ATTTAATT
13180738 TTTATTCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (15 bp):
ATTTAATTAAATTTA
Found at i:13180734 original size:21 final size:21
Alignment explanation
Indices: 13180705--13180752 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
13180695 TATTATTTTA
13180705 TTAACTTTAATTGTAATTAAAT
1 TTAA-TTTAATTGTAATTAAAT
* * *
13180727 TTAATTTAATTTTTATTCAAT
1 TTAATTTAATTGTAATTAAAT
13180748 TTAAT
1 TTAAT
13180753 AAGCACTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (21 bp):
TTAATTTAATTGTAATTAAAT
Found at i:13183841 original size:22 final size:22
Alignment explanation
Indices: 13183771--13183843 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 22
13183761 TCACAATACT
*
13183771 CATATAATTACATAACATTCAAG
1 CATAT-ATCACATAACATTCAAG
13183794 CATATATCAC--AACACTT---G
1 CATATATCACATAACA-TTCAAG
*
13183812 TATA-ATCACATAACATTCAAG
1 CATATATCACATAACATTCAAG
13183833 CATATATCACA
1 CATATATCACA
13183844 ATACTCAAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 15
0.69 0.05 0.26
Matches are distributed among these distances:
17 5 0.12
18 6 0.15
19 4 0.10
20 4 0.10
21 6 0.15
22 10 0.25
23 5 0.12
ACGTcount: A:0.45, C:0.22, G:0.04, T:0.29
Consensus pattern (22 bp):
CATATATCACATAACATTCAAG
Found at i:13183844 original size:39 final size:39
Alignment explanation
Indices: 13183713--13183850 Score: 186
Period size: 39 Copynumber: 3.5 Consensus size: 39
13183703 ATTCACTTTT
* ** * *
13183713 AAGCATATGTCACATTACACATATAATTACATAACATTT
1 AAGCATATATCACAACACTCATATAATTACATAACATTC
*
13183752 AAGCATATATCACAATACTCATATAATTACATAACATTC
1 AAGCATATATCACAACACTCATATAATTACATAACATTC
** *
13183791 AAGCATATATCACAACACTTGTATAATCACATAACATTC
1 AAGCATATATCACAACACTCATATAATTACATAACATTC
*
13183830 AAGCATATATCACAATACTCA
1 AAGCATATATCACAACACTCA
13183851 AAGACATGTT
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.30
Consensus pattern (39 bp):
AAGCATATATCACAACACTCATATAATTACATAACATTC
Found at i:13185753 original size:20 final size:21
Alignment explanation
Indices: 13185725--13185778 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
13185715 GAAGACCTAG
13185725 GTATCAATACCT-T-GAAGCAT
1 GTATCAATACCTCTAG-AGCAT
*
13185745 GTATTAATACCTCTAGAGCAT
1 GTATCAATACCTCTAGAGCAT
13185766 GTATCAATACCTC
1 GTATCAATACCTC
13185779 ATGAACAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 11 0.37
21 18 0.60
22 1 0.03
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (21 bp):
GTATCAATACCTCTAGAGCAT
Found at i:13185790 original size:21 final size:20
Alignment explanation
Indices: 13185725--13185792 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 20
13185715 GAAGACCTAG
13185725 GTATCAATACCT-TGAAGCAT
1 GTATCAATACCTCTGAA-CAT
* *
13185745 GTATTAATACCTCTAGAGCAT
1 GTATCAATACCTCT-GAACAT
*
13185766 GTATCAATACCTCATGAACAA
1 GTATCAATACCTC-TGAACAT
13185787 GTATCA
1 GTATCA
13185793 GTACAATGCC
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
20 11 0.28
21 26 0.65
22 3 0.08
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (20 bp):
GTATCAATACCTCTGAACAT
Found at i:13195520 original size:33 final size:33
Alignment explanation
Indices: 13195469--13195570 Score: 116
Period size: 33 Copynumber: 3.1 Consensus size: 33
13195459 GCTGGTATGC
* * *
13195469 AAGGTGAAGA-AGGAGTAACATGTATAGAAGATG
1 AAGGTGAA-ATAGGGGTAACAGGTATAGAAGGTG
* *
13195502 AAGGTGAAATAGGGGTAACCGGTATAGAGGGTG
1 AAGGTGAAATAGGGGTAACAGGTATAGAAGGTG
* * *
13195535 AAGGAGATATAGAGGTAACAGGTATAGAAGGTG
1 AAGGTGAAATAGGGGTAACAGGTATAGAAGGTG
13195568 AAG
1 AAG
13195571 CTAAAGGCTC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
32 1 0.02
33 57 0.98
ACGTcount: A:0.41, C:0.04, G:0.37, T:0.18
Consensus pattern (33 bp):
AAGGTGAAATAGGGGTAACAGGTATAGAAGGTG
Found at i:13201696 original size:21 final size:22
Alignment explanation
Indices: 13201672--13201712 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
13201662 TTGAATTAAT
*
13201672 TTAATTCATTTAA-TCGGTCAG
1 TTAATTCATCTAATTCGGTCAG
*
13201693 TTAATTGATCTAATTCGGTC
1 TTAATTCATCTAATTCGGTC
13201713 GGAAGTCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.44
Consensus pattern (22 bp):
TTAATTCATCTAATTCGGTCAG
Found at i:13204142 original size:50 final size:50
Alignment explanation
Indices: 13203976--13204165 Score: 173
Period size: 50 Copynumber: 3.7 Consensus size: 50
13203966 GGTAAATAGA
* *
13203976 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCATTGAGATTGTGAGAGG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCA-C----CGA-TATGAGAGG
* * * * *
13204032 TCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGATATGAGAGG
** * * **
13204082 TCCCCCGTAAGACTATGTCTAGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGATATGAGAGG
* * * *
13204132 TCCCATGTAAGACCATATCTGGGATATGGAATTG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTG
13204166 ACAATATAGG
Statistics
Matches: 108, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
50 71 0.66
51 2 0.02
55 1 0.01
56 34 0.31
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGATATGAGAGG
Found at i:13217646 original size:69 final size:69
Alignment explanation
Indices: 13217559--13217735 Score: 221
Period size: 69 Copynumber: 2.6 Consensus size: 69
13217549 TTAAGCTTGC
* * * * **
13217559 AACTCCAACACGGCTAGCGGACCTACACTCCCAAATGATGTTACAAAGGTTTTTCGGTTTATGAT
1 AACTCCAAAACAGCTAGCGGACCTACACTCCCAACTGATGTTACAAAGGTTTTCCAATTTATGAT
13217624 -TACA
66 CT-CA
* * *
13217628 AACTCCAAAACAGCTAGCGGACCTACACTCCCAGCTAATGTTACAAAGGTTTTCCAATTTATTAT
1 AACTCCAAAACAGCTAGCGGACCTACACTCCCAACTGATGTTACAAAGGTTTTCCAATTTATGAT
13217693 CTCA
66 CTCA
* * * *
13217697 ACCTCCAAAACAACTAGCAGACCTACACCCCCAACTGAT
1 AACTCCAAAACAGCTAGCGGACCTACACTCCCAACTGAT
13217736 ACTCTAAGAG
Statistics
Matches: 92, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
69 91 0.99
70 1 0.01
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.24
Consensus pattern (69 bp):
AACTCCAAAACAGCTAGCGGACCTACACTCCCAACTGATGTTACAAAGGTTTTCCAATTTATGAT
CTCA
Found at i:13217781 original size:68 final size:67
Alignment explanation
Indices: 13217699--13217917 Score: 251
Period size: 68 Copynumber: 3.2 Consensus size: 67
13217689 TTATCTCAAC
* *
13217699 CTCCAAAACAACTAGCAGACCTACACCCCCAACTGATACTCTAAGAGCTCGTAGAGTTAAGCTCA
1 CTCCAACACAACTAGCAGACCTACACTCCCAACTGATACTCTAAGAGCTCG-AGAGTTAAGCTCA
13217764 CAA
65 CAA
** * * * * *
13217767 CTCCAACACAACTAGTGGACCTACACTCCTAGCTGATACTCTAAGAGCTCACAGACTTAAGCTCG
1 CTCCAACACAACTAGCAGACCTACACTCCCAACTGATACTCTAAGAGCTC-GAGAGTTAAGCTCA
* *
13217832 TAG
65 CAA
* * * *
13217835 CTCCAACAAAACTAGCAGACCTACGCTCTCAACTGATACTCTAAGAGCTCGAGGAGCTAAGCTCA
1 CTCCAACACAACTAGCAGACCTACACTCCCAACTGATACTCTAAGAGCTCGA-GAGTTAAGCTCA
13217900 CAGA
65 CA-A
*
13217904 -TCCAACACATCTAG
1 CTCCAACACAACTAG
13217918 GTAATTGATT
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
67 1 0.01
68 121 0.99
ACGTcount: A:0.34, C:0.32, G:0.15, T:0.19
Consensus pattern (67 bp):
CTCCAACACAACTAGCAGACCTACACTCCCAACTGATACTCTAAGAGCTCGAGAGTTAAGCTCAC
AA
Found at i:13246215 original size:43 final size:43
Alignment explanation
Indices: 13246153--13246237 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
13246143 TCATGTCTCA
13246153 TTTCTCACCTCATAATCATTTCTCATATTTGT-CATTTCAATAT
1 TTTCTCACCTCATAATCATTTCTCATATTT-TCCATTTCAATAT
* * *
13246196 TTTCTCATCTCATATTCATTTCTCATCTTTTCCATTTCAATA
1 TTTCTCACCTCATAATCATTTCTCATATTTTCCATTTCAATA
13246238 CCAATCATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 1 0.03
43 37 0.97
ACGTcount: A:0.24, C:0.25, G:0.01, T:0.51
Consensus pattern (43 bp):
TTTCTCACCTCATAATCATTTCTCATATTTTCCATTTCAATAT
Found at i:13247468 original size:15 final size:15
Alignment explanation
Indices: 13247448--13247486 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
13247438 CTTTAATTTT
13247448 TATTATTATAACATA
1 TATTATTATAACATA
*
13247463 TATTATTATAACTTA
1 TATTATTATAACATA
13247478 TATATATTA
1 TAT-TATTA
13247487 AGTTAACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (15 bp):
TATTATTATAACATA
Done.