Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 5 of 230
Found at i:1361096 original size:16 final size:18
Alignment explanation
Indices: 1361061--1361098 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
1361051 ATCCTTATTT
1361061 AAATAAAATACAATAGTA
1 AAATAAAATACAATAGTA
1361079 AAATAAAATA-AA-AGTA
1 AAATAAAATACAATAGTA
1361095 AAAT
1 AAAT
1361099 CCATATAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAATAGTA
Found at i:1367230 original size:16 final size:16
Alignment explanation
Indices: 1367196--1367230 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
1367186 ACTGAAAAAG
*
1367196 AAATTGAAAAGATGAA
1 AAATTGAAAAGATAAA
1367212 AAATTGAAAAGATAAA
1 AAATTGAAAAGATAAA
1367228 AAA
1 AAA
1367231 AAATAGAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (16 bp):
AAATTGAAAAGATAAA
Found at i:1372700 original size:12 final size:13
Alignment explanation
Indices: 1372683--1372719 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
1372673 GAACCGGACA
1372683 CGAACCGAA-CTC
1 CGAACCGAAGCTC
1372695 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
1372707 CGAACCGTAGCTC
1 CGAACCGAAGCTC
1372720 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:1381474 original size:17 final size:19
Alignment explanation
Indices: 1381447--1381484 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
1381437 GTTTTATTTT
1381447 TTTTTTAATC-ATTTCAAG
1 TTTTTTAATCAATTTCAAG
1381465 TTTTTT-ATCAATTTCAAG
1 TTTTTTAATCAATTTCAAG
1381483 TT
1 TT
1381485 CGAATCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.26, C:0.11, G:0.05, T:0.58
Consensus pattern (19 bp):
TTTTTTAATCAATTTCAAG
Found at i:1384135 original size:29 final size:28
Alignment explanation
Indices: 1384103--1384157 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
1384093 TTTTAAAATA
*
1384103 TAAAAATA-AAGGGACTAAATTCCTAAAAG
1 TAAAAATATAA-GGAATAAATT-CTAAAAG
*
1384132 TAAAAGTATAAGGAATAAATTCTAAA
1 TAAAAATATAAGGAATAAATTCTAAA
1384158 TTCGTGAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 5 0.22
29 16 0.70
30 2 0.09
ACGTcount: A:0.56, C:0.07, G:0.13, T:0.24
Consensus pattern (28 bp):
TAAAAATATAAGGAATAAATTCTAAAAG
Found at i:1386185 original size:21 final size:21
Alignment explanation
Indices: 1386155--1386196 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1386145 AAAAAATAGT
* *
1386155 AAATCAGTCCTTGTACGTTAG
1 AAATCAGTCCCTGCACGTTAG
*
1386176 AAATCGGTCCCTGCACGTTAG
1 AAATCAGTCCCTGCACGTTAG
1386197 CATGAGTTGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (21 bp):
AAATCAGTCCCTGCACGTTAG
Found at i:1388079 original size:31 final size:31
Alignment explanation
Indices: 1388036--1388109 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
1388026 AGGCTTAATA
*
1388036 TAACATTGGTACCTGAACTTGACAATTTTTCC
1 TAAC-TTGGTACCTAAACTTGACAATTTTTCC
* * * *
1388068 TAATTTGGTACCTAAACTTGATATTTTTTCT
1 TAACTTGGTACCTAAACTTGACAATTTTTCC
1388099 TAACTTGGTAC
1 TAACTTGGTAC
1388110 TTAATCTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 33 0.92
32 3 0.08
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (31 bp):
TAACTTGGTACCTAAACTTGACAATTTTTCC
Found at i:1392305 original size:42 final size:41
Alignment explanation
Indices: 1392227--1392305 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 41
1392217 CAATTATGTA
* * *
1392227 ATATTAGATAGATTATATTAAGTTTTATGTTTGATTTTAGT
1 ATATTAGATAGATTATATTAAGTGTTAAGTTCGATTTTAGT
*
1392268 ATATTAGTTTAGATTATATTGAA-TGTTAAGTTCGATTT
1 ATATTAG-ATAGATTATATT-AAGTGTTAAGTTCGATTT
1392306 ATTATAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
41 7 0.22
42 23 0.72
43 2 0.06
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.52
Consensus pattern (41 bp):
ATATTAGATAGATTATATTAAGTGTTAAGTTCGATTTTAGT
Found at i:1394621 original size:58 final size:58
Alignment explanation
Indices: 1394556--1394679 Score: 248
Period size: 58 Copynumber: 2.1 Consensus size: 58
1394546 GTCATCTTAC
1394556 TTGAAAATAATGTGAATCTTTGAAATTTGGTCTTACTAGTAGATGAATGAACTTATAT
1 TTGAAAATAATGTGAATCTTTGAAATTTGGTCTTACTAGTAGATGAATGAACTTATAT
1394614 TTGAAAATAATGTGAATCTTTGAAATTTGGTCTTACTAGTAGATGAATGAACTTATAT
1 TTGAAAATAATGTGAATCTTTGAAATTTGGTCTTACTAGTAGATGAATGAACTTATAT
1394672 TTGAAAAT
1 TTGAAAAT
1394680 GTGGCAATGA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 66 1.00
ACGTcount: A:0.37, C:0.06, G:0.17, T:0.40
Consensus pattern (58 bp):
TTGAAAATAATGTGAATCTTTGAAATTTGGTCTTACTAGTAGATGAATGAACTTATAT
Found at i:1399473 original size:13 final size:13
Alignment explanation
Indices: 1399455--1399481 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1399445 CCACCTTAGA
1399455 AATCCAACCATAT
1 AATCCAACCATAT
1399468 AATCCAACCATAT
1 AATCCAACCATAT
1399481 A
1 A
1399482 CTTTTATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (13 bp):
AATCCAACCATAT
Found at i:1400367 original size:15 final size:15
Alignment explanation
Indices: 1400332--1400373 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
1400322 TTAAGAATTT
*
1400332 TATTAAATTAT-ATA
1 TATTTAATTATAATA
1400346 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
1400360 TATTTAATAATAAT
1 TATTTAATTATAAT
1400374 CATGTTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:1400395 original size:107 final size:108
Alignment explanation
Indices: 1400281--1400491 Score: 361
Period size: 107 Copynumber: 2.0 Consensus size: 108
1400271 TATAGTATTA
* * *
1400281 TATATTATGATTTTAGTAAATTCATATAAGAATACTGATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATACTAATTATTAAAAATTTTATTAAATTATATA
1400346 TTTTAATTATAATATATTTAATAATAATCATG-TTAAATTATC
66 TTTTAATTATAATATATTTAATAATAATCATGTTTAAATTATC
* *
1400388 TATATTATTATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATACTAATTATTAAAAATTTTATTAAATTATATA
*
1400453 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 TTTTAATTATAATATATTTAATAATAATCATGTTTAAAT
1400492 ATGATTAAAT
Statistics
Matches: 97, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
107 91 0.94
108 6 0.06
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (108 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATACTAATTATTAAAAATTTTATTAAATTATATA
TTTTAATTATAATATATTTAATAATAATCATGTTTAAATTATC
Found at i:1400469 original size:16 final size:16
Alignment explanation
Indices: 1400448--1400489 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
1400438 TTATTAAATT
*
1400448 ATATATTTTAATTATA
1 ATATATTTTAATAATA
1400464 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
1400479 AT-TATGTTTAA
1 ATATAT-TTTAA
1400490 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:1400474 original size:15 final size:15
Alignment explanation
Indices: 1400439--1400480 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
1400429 TTAAAAATTT
*
1400439 TATTAAATTAT-ATA
1 TATTTAATTATAATA
1400453 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
1400467 TATTTAATAATAAT
1 TATTTAATTATAAT
1400481 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:1400740 original size:16 final size:16
Alignment explanation
Indices: 1400705--1400772 Score: 82
Period size: 16 Copynumber: 4.2 Consensus size: 16
1400695 GATTTGCTAT
* * *
1400705 TACACCTCTATTTCAT
1 TACACCTCTAATCCAA
1400721 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
1400737 TACATCTCCAATCCAA
1 TACACCTCTAATCCAA
*
1400753 TAGACCTCTAATCCAA
1 TACACCTCTAATCCAA
1400769 TACA
1 TACA
1400773 GTGAACCAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.35, C:0.34, G:0.01, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:1406493 original size:7 final size:7
Alignment explanation
Indices: 1406470--1406503 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
1406460 TTATTTATGA
1406470 ATATT-T
1 ATATTAT
1406476 ATATCTAT
1 ATAT-TAT
1406484 ATATTAT
1 ATATTAT
1406491 ATATTAT
1 ATATTAT
1406498 ATATTA
1 ATATTA
1406504 AAGTTGATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 4 0.15
7 17 0.65
8 5 0.19
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (7 bp):
ATATTAT
Found at i:1425493 original size:17 final size:18
Alignment explanation
Indices: 1425473--1425508 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
1425463 TATAAATTCT
1425473 TTAAAAATATA-TATTAA
1 TTAAAAATATATTATTAA
*
1425490 TTAAAATTATATTATTAA
1 TTAAAAATATATTATTAA
1425508 T
1 T
1425509 ATGTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAAAAATATATTATTAA
Found at i:1430810 original size:21 final size:20
Alignment explanation
Indices: 1430785--1430829 Score: 72
Period size: 21 Copynumber: 2.2 Consensus size: 20
1430775 TGATTTTAAT
1430785 AATTAAATAATTTAAATAAAA
1 AATTAAATAATTT-AATAAAA
*
1430806 AATTAAATAATTTAATAATA
1 AATTAAATAATTTAATAAAA
1430826 AATT
1 AATT
1430830 TGTAATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AATTAAATAATTTAATAAAA
Found at i:1435604 original size:9 final size:10
Alignment explanation
Indices: 1435576--1435608 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
1435566 CTAATATATA
1435576 TTTATAAATT
1 TTTATAAATT
1435586 TTTATAAATT
1 TTTATAAATT
*
1435596 TTT-TGAATT
1 TTTATAAATT
1435605 TTTA
1 TTTA
1435609 ATTTTAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTATAAATT
Found at i:1446016 original size:83 final size:84
Alignment explanation
Indices: 1445917--1446073 Score: 237
Period size: 84 Copynumber: 1.9 Consensus size: 84
1445907 AGGGTGGCTA
* * *
1445917 AAGTGCAATTTTACTATATGTTAGTTTATAATTTCT-T-TATTTAAAAGAGGACTGAATTGAAAA
1 AAGTGCAATTTCACTATATATTAATTTATAATTT-TATCTATTTAAAAGAGGACTGAATTGAAAA
1445980 TTTTTCATTTGGGGGGGTCG
65 TTTTTCATTTGGGGGGGTCG
* * *
1446000 AAGTGCAATTTCACTATATATTAATTTATAGTTTTATCTATTTATAAGAGGACTGAATTGAAATT
1 AAGTGCAATTTCACTATATATTAATTTATAATTTTATCTATTTAAAAGAGGACTGAATTGAAAAT
1446065 TTTTCATTT
66 TTTTCATTT
1446074 TCCCCTGCCT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
82 1 0.02
83 31 0.47
84 34 0.52
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.45
Consensus pattern (84 bp):
AAGTGCAATTTCACTATATATTAATTTATAATTTTATCTATTTAAAAGAGGACTGAATTGAAAAT
TTTTCATTTGGGGGGGTCG
Found at i:1451110 original size:52 final size:52
Alignment explanation
Indices: 1451034--1451232 Score: 248
Period size: 52 Copynumber: 3.9 Consensus size: 52
1451024 CCATGGCAGC
* *
1451034 ATGTGAAATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAA
1 ATGTGATATGTG-CTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAA
*
1451087 ATGTGATTTGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAA
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAA
* * * * *
1451139 ATGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATC--AG--
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAA
* * *
1451187 -TGTGATATGTG-ATCCGTATAAGACCATGGCTGGGCTATGGCCTCGG
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGG
1451233 TATGTGATAT
Statistics
Matches: 128, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
46 26 0.20
47 11 0.09
50 2 0.02
52 79 0.62
53 10 0.08
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (52 bp):
ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAA
Found at i:1473372 original size:31 final size:31
Alignment explanation
Indices: 1473312--1473374 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 31
1473302 TAACAAAATG
*
1473312 GTCATTGAACTACTTGAAAATTTTCATTTAA
1 GTCATTGAACTACTTGAAAATCTTCATTTAA
1473343 GTCATTGAACTA-TTCGAAATATCTT-ATTTAA
1 GTCATTGAACTACTT-GAAA-ATCTTCATTTAA
1473374 G
1 G
1473375 GCACTAGGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 2 0.07
31 23 0.79
32 4 0.14
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (31 bp):
GTCATTGAACTACTTGAAAATCTTCATTTAA
Found at i:1477278 original size:14 final size:15
Alignment explanation
Indices: 1477254--1477283 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
1477244 GTATCTGAAT
1477254 AATTAATTAATATTA
1 AATTAATTAATATTA
1477269 AATT-ATTAATATTA
1 AATTAATTAATATTA
1477283 A
1 A
1477284 TTAGTTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTAATTAATATTA
Found at i:1477503 original size:18 final size:18
Alignment explanation
Indices: 1477470--1477508 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
1477460 AATTATAACG
1477470 AATATAAATAAAATATTTA
1 AATATAAATAAAATA-TTA
*
1477489 AATAT-AATTAAATATTA
1 AATATAAATAAAATATTA
1477506 AAT
1 AAT
1477509 TTGTAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 8 0.42
19 5 0.26
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AATATAAATAAAATATTA
Found at i:1498927 original size:137 final size:131
Alignment explanation
Indices: 1498671--1498927 Score: 397
Period size: 131 Copynumber: 1.9 Consensus size: 131
1498661 GAAGATTGAC
*
1498671 TAAGACGAAGGCGAAGGAGATCCGATCATGGAAGGAGAGAAAGAGATCAGCCGTGAAGTGTGGTC
1 TAAGACGAAGGCGAAGGAGATCCGATCATGGAAGGAGAGAAAGAGATCAGCCGTGAAGTGTGGAC
* *
1498736 TTGCCGCCGAGAAGAACACGGCGGAGGAAGAGGAGAAAGTAGCGCCATTGAAATGTATAGATCGA
66 TTACCGCAGAGAAGAACACGGCGGAGGAAGAGGAGAAAGTAGCGCCATTGAAATGTATAGATCGA
1498801 A
131 A
* * * *
1498802 TAAGACGAGGGCGAAGGAGATCCTATCATGGAAGGAGAGAAAGAGATCGGCCGTGAAGTGTGGAG
1 TAAGACGAAGGCGAAGGAGATCCGATCATGGAAGGAGAGAAAGAGATCAGCCGTGAAGTGTGGAC
1498867 TTACCGTCGAGGAGAAGAAGAACACGGCGGAGGAAGAGGAGAAAGTAGCGCCATTGAAATG
66 TTACCG-C----AG-AGAAGAACACGGCGGAGGAAGAGGAGAAAGTAGCGCCATTGAAATG
1498928 CGATTGGCGC
Statistics
Matches: 113, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
131 65 0.58
132 1 0.01
136 1 0.01
137 46 0.41
ACGTcount: A:0.36, C:0.14, G:0.37, T:0.13
Consensus pattern (131 bp):
TAAGACGAAGGCGAAGGAGATCCGATCATGGAAGGAGAGAAAGAGATCAGCCGTGAAGTGTGGAC
TTACCGCAGAGAAGAACACGGCGGAGGAAGAGGAGAAAGTAGCGCCATTGAAATGTATAGATCGA
A
Found at i:1500774 original size:39 final size:41
Alignment explanation
Indices: 1500712--1500800 Score: 130
Period size: 39 Copynumber: 2.2 Consensus size: 41
1500702 TGAAAAGTAT
*
1500712 TTATATT-AAAAACACTACCATAAATATAATAAATATTTTA
1 TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
*
1500752 TTATATTAAAAAACAC-A-AATAAATATAATAATTATTTTA
1 TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
*
1500791 TTACATTAAA
1 TTATATTAAA
1500801 TATAATTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
39 29 0.64
40 8 0.18
41 8 0.18
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (41 bp):
TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
Found at i:1502005 original size:52 final size:52
Alignment explanation
Indices: 1501949--1502047 Score: 126
Period size: 52 Copynumber: 1.9 Consensus size: 52
1501939 AAAATAAAAA
* *
1501949 ACTCAAGCCTTAAACCTACCCTGACCCCAATTGACTCGATCCAAAAAGGAAT
1 ACTCAAGCCTTAAACCTACCCTGACCCCAATTAACCCGATCCAAAAAGGAAT
* * * * * *
1502001 ACTCAAGCGTTAGACCTGCCCTGATCTCAATTAACCCGATTCAAAAA
1 ACTCAAGCCTTAAACCTACCCTGACCCCAATTAACCCGATCCAAAAA
1502048 ATAAAATGAC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
52 39 1.00
ACGTcount: A:0.35, C:0.31, G:0.12, T:0.21
Consensus pattern (52 bp):
ACTCAAGCCTTAAACCTACCCTGACCCCAATTAACCCGATCCAAAAAGGAAT
Found at i:1502111 original size:84 final size:84
Alignment explanation
Indices: 1501970--1502137 Score: 336
Period size: 84 Copynumber: 2.0 Consensus size: 84
1501960 AAACCTACCC
1501970 TGACCCCAATTGACTCGATCCAAAAAGGAATACTCAAGCGTTAGACCTGCCCTGATCTCAATTAA
1 TGACCCCAATTGACTCGATCCAAAAAGGAATACTCAAGCGTTAGACCTGCCCTGATCTCAATTAA
1502035 CCCGATTCAAAAAATAAAA
66 CCCGATTCAAAAAATAAAA
1502054 TGACCCCAATTGACTCGATCCAAAAAGGAATACTCAAGCGTTAGACCTGCCCTGATCTCAATTAA
1 TGACCCCAATTGACTCGATCCAAAAAGGAATACTCAAGCGTTAGACCTGCCCTGATCTCAATTAA
1502119 CCCGATTCAAAAAATAAAA
66 CCCGATTCAAAAAATAAAA
1502138 ATTGCAGTGA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 84 1.00
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.21
Consensus pattern (84 bp):
TGACCCCAATTGACTCGATCCAAAAAGGAATACTCAAGCGTTAGACCTGCCCTGATCTCAATTAA
CCCGATTCAAAAAATAAAA
Found at i:1509698 original size:29 final size:30
Alignment explanation
Indices: 1509631--1509698 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
1509621 ATTTGCAATT
* * *
1509631 ATTTGATTCTTTTTAATAGTATAGAGACTAC
1 ATTTGA-TCTATTTAATAATAAAGAGACTAC
*
1509662 A-TTAATCTATTTAATAATAAAGAGACTA-
1 ATTTGATCTATTTAATAATAAAGAGACTAC
1509690 ATTTGATCT
1 ATTTGATCT
1509699 GGTCCCTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
28 1 0.03
29 26 0.84
30 3 0.10
31 1 0.03
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (30 bp):
ATTTGATCTATTTAATAATAAAGAGACTAC
Found at i:1538907 original size:25 final size:25
Alignment explanation
Indices: 1538874--1538933 Score: 120
Period size: 25 Copynumber: 2.4 Consensus size: 25
1538864 ACAAGATTTG
1538874 TTTTTAACAGTAAGAATAGATGAAT
1 TTTTTAACAGTAAGAATAGATGAAT
1538899 TTTTTAACAGTAAGAATAGATGAAT
1 TTTTTAACAGTAAGAATAGATGAAT
1538924 TTTTTAACAG
1 TTTTTAACAG
1538934 AAAAACCGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.42, C:0.05, G:0.15, T:0.38
Consensus pattern (25 bp):
TTTTTAACAGTAAGAATAGATGAAT
Found at i:1539318 original size:6 final size:6
Alignment explanation
Indices: 1539307--1539360 Score: 108
Period size: 6 Copynumber: 9.0 Consensus size: 6
1539297 TCAGGTTCCC
1539307 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1539355 ACATAT
1 ACATAT
1539361 GTGTATGGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ACATAT
Found at i:1543025 original size:23 final size:22
Alignment explanation
Indices: 1542975--1543025 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 22
1542965 ATTTTAGTCC
*
1542975 TTTTAAAAATAATGAAATTATA
1 TTTTAAAAATAATAAAATTATA
** *
1542997 AATTAATAAATGATAAAATTATA
1 TTTTAA-AAATAATAAAATTATA
1543020 TTTTAA
1 TTTTAA
1543026 CATCTCAAAA
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (22 bp):
TTTTAAAAATAATAAAATTATA
Found at i:1544317 original size:27 final size:27
Alignment explanation
Indices: 1544285--1544338 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
1544275 AGAAATTTTA
1544285 AATTTAACCAAGTTCAAGTTATTAATT
1 AATTTAACCAAGTTCAAGTTATTAATT
** *
1544312 AATTTAATGAAGTTGAAGTTATTAATT
1 AATTTAACCAAGTTCAAGTTATTAATT
1544339 TTTAATAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.41, C:0.06, G:0.11, T:0.43
Consensus pattern (27 bp):
AATTTAACCAAGTTCAAGTTATTAATT
Found at i:1547299 original size:23 final size:23
Alignment explanation
Indices: 1547244--1547299 Score: 55
Period size: 23 Copynumber: 2.5 Consensus size: 23
1547234 AAAGAAATGG
1547244 ATGC-ATATATATATTTTTATAT
1 ATGCAATATATATATTTTTATAT
* *
1547266 -TGGATTA-ATATAATTTTTTATAT
1 ATGCAATATATAT-A-TTTTTATAT
1547289 ATGCAATATAT
1 ATGCAATATAT
1547300 CAACTTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 7
0.69 0.11 0.19
Matches are distributed among these distances:
21 6 0.24
22 3 0.12
23 9 0.36
24 5 0.20
25 2 0.08
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.52
Consensus pattern (23 bp):
ATGCAATATATATATTTTTATAT
Found at i:1551888 original size:27 final size:27
Alignment explanation
Indices: 1551834--1551896 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
1551824 TAAATTTCAA
*
1551834 AATTATATATAAACTTTAATTTAATGT
1 AATTATACATAAACTTTAATTTAATGT
**
1551861 ACA-TATACATAAACTTTAATTTGGTGT
1 A-ATTATACATAAACTTTAATTTAATGT
1551888 AATTATACA
1 AATTATACA
1551897 CGTAAAACCC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 1 0.03
27 29 0.94
28 1 0.03
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (27 bp):
AATTATACATAAACTTTAATTTAATGT
Found at i:1557655 original size:36 final size:36
Alignment explanation
Indices: 1557609--1557687 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
1557599 ACTTCACAAC
* *
1557609 TTAGCCGTTCCTTCTATTTCTTCTTTCTGTTTCAGT
1 TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
*
1557645 TTAGCTGTTCCTTCTGTTTCTTCCTTCTGTTTCAGT
1 TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
1557681 TTAGCTG
1 TTAGCTG
1557688 CTTCACAACC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.08, C:0.24, G:0.14, T:0.54
Consensus pattern (36 bp):
TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
Found at i:1557670 original size:13 final size:13
Alignment explanation
Indices: 1557652--1557677 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1557642 AGTTTAGCTG
1557652 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
1557665 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
1557678 AGTTTAGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (13 bp):
TTCCTTCTGTTTC
Found at i:1560843 original size:120 final size:120
Alignment explanation
Indices: 1560646--1561868 Score: 2302
Period size: 120 Copynumber: 10.2 Consensus size: 120
1560636 TTTTCAAGTT
*
1560646 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1560711 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
1560766 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1560831 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
1560886 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1560951 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
* *
1561006 ATATATTTAATAATAATTATTTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
1561071 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
1561126 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
1561191 TAATATAAGAATATCAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
1561246 ATATATTTAATAATAATTATTTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
1561311 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
1561366 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1561431 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
1561486 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
1561551 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
1561606 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
1561671 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
1561726 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
1561791 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
1561846 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
1561869 TAAATATGAT
Statistics
Matches: 1083, Mismatches: 20, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 1083 1.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:1561725 original size:18 final size:17
Alignment explanation
Indices: 1561697--1561731 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
1561687 ATTATTAAGA
*
1561697 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
1561714 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
1561732 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:1561845 original size:18 final size:17
Alignment explanation
Indices: 1561817--1561851 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
1561807 ATTATTAAGA
*
1561817 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
1561834 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
1561852 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:1562081 original size:44 final size:45
Alignment explanation
Indices: 1562016--1562106 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
1562006 ACCTCTATTC
* * *
1562016 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
1562060 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
1562105 CA
1 CA
1562107 ACTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:1562111 original size:16 final size:16
Alignment explanation
Indices: 1562087--1562155 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
1562077 GATTAGCTAT
1562087 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
1562103 TACAACTCTAATCCCAA
1 TACACCTCTAAT-CCAA
1562120 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
1562136 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
1562152 TACA
1 TACA
1562156 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 33 0.69
17 15 0.31
ACGTcount: A:0.38, C:0.36, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:1562129 original size:33 final size:32
Alignment explanation
Indices: 1562087--1562155 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
1562077 GATTAGCTAT
1562087 TACACCTCTAATCCAATACAACTCTAATCCCAA
1 TACACCTCTAATCCAATACAACTCTAAT-CCAA
**
1562120 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACAACTCTAATCCAA
1562152 TACA
1 TACA
1562156 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 8 0.24
33 26 0.76
ACGTcount: A:0.38, C:0.36, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACAACTCTAATCCAA
Found at i:1562565 original size:42 final size:42
Alignment explanation
Indices: 1562512--1562595 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
1562502 TTATTACCCA
* *
1562512 TTTCTCGTTTTTTTAATTATATTGGAAATCGCTGAGTTTATC
1 TTTCTCCTTTTTCTAATTATATTGGAAATCGCTGAGTTTATC
* *
1562554 TTTCTCCTTTTTCTGATTATATTGGGAATCGCTGAGTTTATC
1 TTTCTCCTTTTTCTAATTATATTGGAAATCGCTGAGTTTATC
1562596 GACTTAGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.19, C:0.14, G:0.15, T:0.51
Consensus pattern (42 bp):
TTTCTCCTTTTTCTAATTATATTGGAAATCGCTGAGTTTATC
Found at i:1565126 original size:13 final size:13
Alignment explanation
Indices: 1565087--1565130 Score: 63
Period size: 13 Copynumber: 3.3 Consensus size: 13
1565077 CTGAAAATTT
1565087 TTTTATGGGAAAA
1 TTTTATGGGAAAA
1565100 TTTTGCAT-GGAAAA
1 TTTT--ATGGGAAAA
1565114 TTTTATGGGAAAA
1 TTTTATGGGAAAA
1565127 TTTT
1 TTTT
1565131 TCTCCAGCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 2 0.07
13 14 0.50
14 10 0.36
15 2 0.07
ACGTcount: A:0.34, C:0.02, G:0.20, T:0.43
Consensus pattern (13 bp):
TTTTATGGGAAAA
Found at i:1565131 original size:14 final size:14
Alignment explanation
Indices: 1565086--1565131 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
1565076 TCTGAAAATT
1565086 TTTTTATGGGAAAA
1 TTTTTATGGGAAAA
*
1565100 TTTTGCAT-GGAAAA
1 TTTT-TATGGGAAAA
1565114 -TTTTATGGGAAAA
1 TTTTTATGGGAAAA
1565127 TTTTT
1 TTTTT
1565132 CTCCAGCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 2 0.07
13 9 0.33
14 14 0.52
15 2 0.07
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.46
Consensus pattern (14 bp):
TTTTTATGGGAAAA
Found at i:1570152 original size:177 final size:178
Alignment explanation
Indices: 1569821--1570157 Score: 471
Period size: 177 Copynumber: 1.9 Consensus size: 178
1569811 TTTAGTATGC
* * *
1569821 AATCCCTAATAAACCTCGAAACAGTCTTTTGTATGGTATTGACGCAATGTATAGTTTACAGTTCT
1 AATCCCGAATAAACCTCGAAACAGTCTTTTGAATGGTATTGACACAATGTATAGTTTACAGTTCT
* * * * *
1569886 TTGACTCGATCATACGATGAGGCCATCTAACTTCACCGAGAATATTGTAAAAGTAACCAGCTTGG
66 TTGACTCGAACAAACAATGAGGCCATCTAACTTCACCGAGAATATTGTAAAAGAAACCACCTTGG
* ** *
1569951 ATGACAGAAGTTGTATTGAAAAAGT-TCAACTTGACCGGCAGTATCCA
131 ACGACAGAAGTCCTATTCAAAAAGTCTCAACTTGACCGGCAGTATCCA
** * * *
1569998 AATCCCGAATAAACCTCGAGGCGGTCTTTTGAATGGTATTGACACAATGTATGGTTTACAGTTTT
1 AATCCCGAATAAACCTCGAAACAGTCTTTTGAATGGTATTGACACAATGTATAGTTTACAGTTCT
* **
1570063 TTGACTCGAAGAAACAATGAGGCTGTCTAACTTCACCGAGAATATTGTAAAAGAAACCACCTTGG
66 TTGACTCGAACAAACAATGAGGCCATCTAACTTCACCGAGAATATTGTAAAAGAAACCACCTTGG
1570128 ACGACAGAAAGTCCTA-TCAAAAAGTCTCAA
131 ACGACAG-AAGTCCTATTCAAAAAGTCTCAA
1570158 AACTGCCAGT
Statistics
Matches: 138, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
177 128 0.93
178 10 0.07
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (178 bp):
AATCCCGAATAAACCTCGAAACAGTCTTTTGAATGGTATTGACACAATGTATAGTTTACAGTTCT
TTGACTCGAACAAACAATGAGGCCATCTAACTTCACCGAGAATATTGTAAAAGAAACCACCTTGG
ACGACAGAAGTCCTATTCAAAAAGTCTCAACTTGACCGGCAGTATCCA
Found at i:1571423 original size:19 final size:20
Alignment explanation
Indices: 1571399--1571454 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
1571389 TTCGTTTTAA
1571399 GTATTTTCCGTCAAAATC-C
1 GTATTTTCCGTCAAAATCAC
*
1571418 GTATTTTCCATCAAAATTCAC
1 GTATTTTCCGTCAAAA-TCAC
*
1571439 -CATTTTCCGTCAAAAT
1 GTATTTTCCGTCAAAAT
1571455 TCGCCATCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 16 0.50
20 15 0.47
21 1 0.03
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (20 bp):
GTATTTTCCGTCAAAATCAC
Found at i:1571445 original size:20 final size:20
Alignment explanation
Indices: 1571420--1571461 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
1571410 CAAAATCCGT
1571420 ATTTTCCATCAAAATTCACC
1 ATTTTCCATCAAAATTCACC
* *
1571440 ATTTTCCGTCAAAATTCGCC
1 ATTTTCCATCAAAATTCACC
1571460 AT
1 AT
1571462 CAATATGCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.36
Consensus pattern (20 bp):
ATTTTCCATCAAAATTCACC
Found at i:1572223 original size:57 final size:56
Alignment explanation
Indices: 1572141--1572250 Score: 175
Period size: 57 Copynumber: 1.9 Consensus size: 56
1572131 CTGGTCAAAC
* * *
1572141 TTTATAATTAGTATCTTTATTTTACTCAACTTATAAATTTAGTCCCTTATTTTAAAT
1 TTTATAATTAGTACCTGTATCTTACTCAACTTATAAATTTAGTCCCTT-TTTTAAAT
*
1572198 TTTATAATTAGTCCCTGTATCTTACTCAACTTATAAATTTAGTCCCTTTTTTA
1 TTTATAATTAGTACCTGTATCTTACTCAACTTATAAATTTAGTCCCTTTTTTA
1572251 TTAGTTTACC
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
56 5 0.10
57 44 0.90
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.51
Consensus pattern (56 bp):
TTTATAATTAGTACCTGTATCTTACTCAACTTATAAATTTAGTCCCTTTTTTAAAT
Found at i:1572241 original size:31 final size:29
Alignment explanation
Indices: 1572161--1572250 Score: 98
Period size: 26 Copynumber: 3.1 Consensus size: 29
1572151 GTATCTTTAT
1572161 TTTACTCAACTTATAAATTTAGTCCCTTA
1 TTTACTCAACTTATAAATTTAGTCCCTTA
* *
1572190 TTT--T-AAATTTTATAA-TTAGTCCCTGTA
1 TTTACTCAACTTATA-AATTTAGTCCCT-TA
*
1572217 TCTTACTCAACTTATAAATTTAGTCCCTTT
1 T-TTACTCAACTTATAAATTTAGTCCCTTA
1572247 TTTA
1 TTTA
1572251 TTAGTTTACC
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
26 15 0.31
27 6 0.12
28 2 0.04
29 6 0.12
30 5 0.10
31 15 0.31
ACGTcount: A:0.29, C:0.18, G:0.04, T:0.49
Consensus pattern (29 bp):
TTTACTCAACTTATAAATTTAGTCCCTTA
Found at i:1575168 original size:22 final size:22
Alignment explanation
Indices: 1575140--1575181 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
1575130 CAACATATAG
1575140 AGCAATACAAGCTTCCATTTAA
1 AGCAATACAAGCTTCCATTTAA
1575162 AGCAATACAAGCTTCCATTT
1 AGCAATACAAGCTTCCATTT
1575182 CTGTCAACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.29
Consensus pattern (22 bp):
AGCAATACAAGCTTCCATTTAA
Found at i:1576460 original size:33 final size:33
Alignment explanation
Indices: 1576418--1576482 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
1576408 AAACAGCGCG
1576418 ACTTTAATATAACACCACAAGAAACCTAATACA
1 ACTTTAATATAACACCACAAGAAACCTAATACA
1576451 ACTTTAATATAACACCACAAGAAACCTAATAC
1 ACTTTAATATAACACCACAAGAAACCTAATAC
1576483 TTACCAAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.51, C:0.25, G:0.03, T:0.22
Consensus pattern (33 bp):
ACTTTAATATAACACCACAAGAAACCTAATACA
Found at i:1577460 original size:16 final size:16
Alignment explanation
Indices: 1577425--1577469 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
1577415 ATCTTTATTT
*
1577425 GAATAAATGTAGAGCGAA
1 GAATAAA-G-AGAACGAA
1577443 GAATAAAGAGAACGAA
1 GAATAAAGAGAACGAA
*
1577459 GAACAAAGAGA
1 GAATAAAGAGA
1577470 GCAATAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 17 0.68
17 1 0.04
18 7 0.28
ACGTcount: A:0.58, C:0.07, G:0.27, T:0.09
Consensus pattern (16 bp):
GAATAAAGAGAACGAA
Found at i:1579058 original size:41 final size:41
Alignment explanation
Indices: 1579012--1579096 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
1579002 TAATCTTCAC
1579012 TAAGAAAAAAGTTAACCCATTAATATAATAATTCAATAAAA
1 TAAGAAAAAAGTTAACCCATTAATATAATAATTCAATAAAA
1579053 TAAGAAAAAAGTTAACCCATTAATATAATAATTCAATAAAA
1 TAAGAAAAAAGTTAACCCATTAATATAATAATTCAATAAAA
1579094 TAA
1 TAA
1579097 TTCAATCCTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.59, C:0.09, G:0.05, T:0.27
Consensus pattern (41 bp):
TAAGAAAAAAGTTAACCCATTAATATAATAATTCAATAAAA
Found at i:1579683 original size:14 final size:16
Alignment explanation
Indices: 1579666--1579697 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
1579656 ACAATTTTTT
1579666 TAAAAAA-AT-TATAA
1 TAAAAAATATATATAA
1579680 TAAAAAATATATATAA
1 TAAAAAATATATATAA
1579696 TA
1 TA
1579698 CTTCAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 2 0.12
16 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAAAAATATATATAA
Found at i:1585147 original size:22 final size:22
Alignment explanation
Indices: 1585122--1585167 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
1585112 AGCTTTAAAA
*
1585122 TTCACTTTGATACCTGAGCTTT
1 TTCAATTTGATACCTGAGCTTT
* *
1585144 TTCAATTTGATACTTGAGTTTT
1 TTCAATTTGATACCTGAGCTTT
1585166 TT
1 TT
1585168 TCTCCTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.15, G:0.13, T:0.52
Consensus pattern (22 bp):
TTCAATTTGATACCTGAGCTTT
Found at i:1604442 original size:23 final size:23
Alignment explanation
Indices: 1604388--1604442 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 23
1604378 TAAATTAAAT
*
1604388 ATTAATATTCGTTATTTTAAAAA
1 ATTAATATTCGTTATTTGAAAAA
* ** *
1604411 AATGTTATTCGTTGTTTGAAAAA
1 ATTAATATTCGTTATTTGAAAAA
*
1604434 GTTAATATT
1 ATTAATATT
1604443 TTTTTAAAAA
Statistics
Matches: 23, Mismatches: 9, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.04, G:0.11, T:0.47
Consensus pattern (23 bp):
ATTAATATTCGTTATTTGAAAAA
Found at i:1608677 original size:26 final size:26
Alignment explanation
Indices: 1608648--1608707 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
1608638 TCATTTAAAA
*
1608648 ATTTTAATTTTAAAAAATATTTTCAT
1 ATTTTAATTATAAAAAATATTTTCAT
* * *
1608674 ATTTAAAATATAAAAAATATTTTTAT
1 ATTTTAATTATAAAAAATATTTTCAT
*
1608700 AATTTAAT
1 ATTTTAAT
1608708 GGTTTTTAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (26 bp):
ATTTTAATTATAAAAAATATTTTCAT
Found at i:1617279 original size:31 final size:31
Alignment explanation
Indices: 1617241--1617317 Score: 154
Period size: 31 Copynumber: 2.5 Consensus size: 31
1617231 ATGCTAGTCT
1617241 AATGCTTTTCTTTTATCGAACCGTAAATTCA
1 AATGCTTTTCTTTTATCGAACCGTAAATTCA
1617272 AATGCTTTTCTTTTATCGAACCGTAAATTCA
1 AATGCTTTTCTTTTATCGAACCGTAAATTCA
1617303 AATGCTTTTCTTTTA
1 AATGCTTTTCTTTTA
1617318 CCACCATTGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.27, C:0.18, G:0.09, T:0.45
Consensus pattern (31 bp):
AATGCTTTTCTTTTATCGAACCGTAAATTCA
Found at i:1626482 original size:21 final size:22
Alignment explanation
Indices: 1626453--1626499 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
1626443 CAGAAGGAGT
*
1626453 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
1626475 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
1626496 GAGT
1 GAGT
1626500 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:1633876 original size:21 final size:21
Alignment explanation
Indices: 1633850--1633890 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1633840 ATCTGCTCAA
* *
1633850 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
1633871 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
1633891 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:1640164 original size:45 final size:45
Alignment explanation
Indices: 1640100--1640191 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
1640090 AGATAGAGGA
1640100 AGGTACACCTATTTCATAACACCCTAGATTGTTATAAAACGGGTG
1 AGGTACACCTATTTCATAACACCCTAGATTGTTATAAAACGGGTG
1640145 AGGTACACCTATTTCATAACACCCTAGATTGTTATAAAACGGGTG
1 AGGTACACCTATTTCATAACACCCTAGATTGTTATAAAACGGGTG
1640190 AG
1 AG
1640192 CAAAATGAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (45 bp):
AGGTACACCTATTTCATAACACCCTAGATTGTTATAAAACGGGTG
Found at i:1644256 original size:26 final size:26
Alignment explanation
Indices: 1644236--1644293 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
1644226 CTCGATATAT
1644236 GGCTCTTTGTGAGCTTTTCGATTAAA
1 GGCTCTTTGTGAGCTTTTCGATTAAA
*
1644262 GGCTCTTTGTGAGC-TTTCTGATTAAT
1 GGCTCTTTGTGAGCTTTTC-GATTAAA
1644288 GGCTCT
1 GGCTCT
1644294 CCGGAGCTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 4 0.13
26 26 0.87
ACGTcount: A:0.16, C:0.17, G:0.24, T:0.43
Consensus pattern (26 bp):
GGCTCTTTGTGAGCTTTTCGATTAAA
Found at i:1644300 original size:25 final size:26
Alignment explanation
Indices: 1644244--1644302 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
1644234 ATGGCTCTTT
**
1644244 GTGAGCTTTTCGATTAAAGGCTCTTT
1 GTGAGCTTTTCGATTAAAGGCTCTCC
*
1644270 GTGAGC-TTTCTGATTAATGGCTCTCC
1 GTGAGCTTTTC-GATTAAAGGCTCTCC
1644296 G-GAGCTT
1 GTGAGCTT
1644303 CCCGATATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 8 0.29
26 20 0.71
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.39
Consensus pattern (26 bp):
GTGAGCTTTTCGATTAAAGGCTCTCC
Found at i:1644362 original size:25 final size:24
Alignment explanation
Indices: 1644334--1644404 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 24
1644324 TTCTCGATAT
1644334 ATGGCTATCCAGAGCTTCCTGATTA
1 ATGGCT-TCCAGAGCTTCCTGATTA
* *
1644359 ATGGCTCTTCAGAGCTACCT-ATTA
1 ATGGCT-TCCAGAGCTTCCTGATTA
*
1644383 TTGGC-TCACATGAGCTTCCTGA
1 ATGGCTTC-CA-GAGCTTCCTGA
1644405 ATATGACTCT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 1 0.03
23 2 0.05
24 16 0.43
25 18 0.49
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (24 bp):
ATGGCTTCCAGAGCTTCCTGATTA
Found at i:1644387 original size:24 final size:25
Alignment explanation
Indices: 1644334--1644389 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
1644324 TTCTCGATAT
* * *
1644334 ATGGCTATCCAGAGCTTCCTGATTA
1 ATGGCTCTTCAGAGCTACCTGATTA
1644359 ATGGCTCTTCAGAGCTACCT-ATTA
1 ATGGCTCTTCAGAGCTACCTGATTA
*
1644383 TTGGCTC
1 ATGGCTC
1644390 ACATGAGCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (25 bp):
ATGGCTCTTCAGAGCTACCTGATTA
Found at i:1646677 original size:6 final size:6
Alignment explanation
Indices: 1646623--1646678 Score: 112
Period size: 6 Copynumber: 9.3 Consensus size: 6
1646613 TAAATAAGGT
1646623 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
1646671 AAATAA AA
1 AAATAA AA
1646679 TGGAAAATGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:1648921 original size:16 final size:16
Alignment explanation
Indices: 1648900--1648931 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1648890 TAATGTGTTT
*
1648900 TGCTGCTGTTGTTTAA
1 TGCTGCTATTGTTTAA
1648916 TGCTGCTATTGTTTAA
1 TGCTGCTATTGTTTAA
1648932 ATGCAGAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.12, G:0.22, T:0.50
Consensus pattern (16 bp):
TGCTGCTATTGTTTAA
Found at i:1649113 original size:45 final size:45
Alignment explanation
Indices: 1649045--1649308 Score: 420
Period size: 45 Copynumber: 5.9 Consensus size: 45
1649035 AAGAGGTGGA
** * * *
1649045 CAACATCATGCATAATTTGTGGAACAAATTAAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1649090 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
1649135 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1649180 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
1649225 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
1649270 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
1649309 CCATGGCCGA
Statistics
Matches: 205, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 205 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.26
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:1652861 original size:16 final size:16
Alignment explanation
Indices: 1652840--1652871 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1652830 TAATGTGTTT
1652840 TGCTGCTGTTGTTTAA
1 TGCTGCTGTTGTTTAA
1652856 TGCTGCTGTTGTTTAA
1 TGCTGCTGTTGTTTAA
1652872 ATGCAGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.25, T:0.50
Consensus pattern (16 bp):
TGCTGCTGTTGTTTAA
Found at i:1653053 original size:45 final size:45
Alignment explanation
Indices: 1652985--1653248 Score: 402
Period size: 45 Copynumber: 5.9 Consensus size: 45
1652975 AAGAGGTGGA
** * * *
1652985 CAACATCATGCATAATTTGTGGAACAAATTAAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1653030 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
1653075 GAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1653120 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * *
1653165 CAACACCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
1653210 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
1653249 CCATGGCCGA
Statistics
Matches: 201, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 201 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:1667445 original size:45 final size:45
Alignment explanation
Indices: 1667395--1667480 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
1667385 TCCTTGCTGC
*
1667395 GTATAAATAATTAATAATAAATGCTATATAATTTAGTTAAAATTA
1 GTATAAATAATTAATAATAAATACTATATAATTTAGTTAAAATTA
* * *
1667440 GTATAAGTAATTTATAATAAATATTATATAATTTAGTTAAA
1 GTATAAATAATTAATAATAAATACTATATAATTTAGTTAAA
1667481 TATATAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.50, C:0.01, G:0.07, T:0.42
Consensus pattern (45 bp):
GTATAAATAATTAATAATAAATACTATATAATTTAGTTAAAATTA
Found at i:1667482 original size:20 final size:20
Alignment explanation
Indices: 1667419--1667483 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 20
1667409 TAATAAATGC
*
1667419 TATATAATTTAGTTAAAATTAG
1 TATATAATTTAGTT-AAA-TAT
1667441 TATAAGTAATTTA-TAATAAATAT
1 TAT-A-TAATTTAGT--TAAATAT
1667464 TATATAATTTAGTTAAATAT
1 TATATAATTTAGTTAAATAT
1667484 ATAATAAGTC
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
20 7 0.19
21 7 0.19
22 5 0.14
23 7 0.19
24 10 0.27
25 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (20 bp):
TATATAATTTAGTTAAATAT
Found at i:1667490 original size:20 final size:20
Alignment explanation
Indices: 1667422--1667490 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 20
1667412 TAAATGCTAT
1667422 ATAATTTAGTTAAAATTAGTATA
1 ATAATTTAGTT-AAA-TA-TATA
1667445 AGTAATTTA-TAATAAATAT-TA
1 A-TAATTTAGT--TAAATATATA
1667466 TATAATTTAGTTAAATATATA
1 -ATAATTTAGTTAAATATATA
1667487 ATAA
1 ATAA
1667491 GTCAAAATGT
Statistics
Matches: 40, Mismatches: 0, Indels: 15
0.73 0.00 0.27
Matches are distributed among these distances:
20 11 0.28
21 11 0.28
22 3 0.08
23 4 0.10
24 10 0.25
25 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (20 bp):
ATAATTTAGTTAAATATATA
Found at i:1673123 original size:26 final size:26
Alignment explanation
Indices: 1673067--1673116 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
1673057 AACAGAATAA
* *
1673067 ACAAAACACAAACCATGATAGTGTAG
1 ACAAAACAAAAACCAAGATAGTGTAG
*
1673093 ACAAAACAAAAACTAAGATAGTGT
1 ACAAAACAAAAACCAAGATAGTGT
1673117 GGTCAAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.54, C:0.16, G:0.14, T:0.16
Consensus pattern (26 bp):
ACAAAACAAAAACCAAGATAGTGTAG
Found at i:1679947 original size:15 final size:15
Alignment explanation
Indices: 1679920--1679953 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
1679910 GGTATAAAAT
*
1679920 AAAT-AAAGTAATAA
1 AAATAAAAGAAATAA
1679934 AAATAAAAGAAATAA
1 AAATAAAAGAAATAA
1679949 AAATA
1 AAATA
1679954 CTAGATGCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (15 bp):
AAATAAAAGAAATAA
Found at i:1688074 original size:6 final size:6
Alignment explanation
Indices: 1688063--1688100 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
1688053 TCTTTCTATT
1688063 TTTTTA TTTTTA TTTTTA TTATTGT- TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TT-TT-TA TTTTTA TTTTTA T
1688101 AAATGAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 1 0.03
6 23 0.79
7 4 0.14
8 1 0.03
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:1690550 original size:19 final size:21
Alignment explanation
Indices: 1690521--1690567 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
1690511 TTTTAACCTC
*
1690521 AAACTCAAACCCT-GAA-CCT
1 AAACCCAAACCCTCGAATCCT
*
1690540 GAACCCAAACCCTCGAATCCT
1 AAACCCAAACCCTCGAATCCT
1690561 AAACCCA
1 AAACCCA
1690568 TCAGGGTTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 11 0.48
20 3 0.13
21 9 0.39
ACGTcount: A:0.40, C:0.40, G:0.06, T:0.13
Consensus pattern (21 bp):
AAACCCAAACCCTCGAATCCT
Found at i:1690601 original size:20 final size:20
Alignment explanation
Indices: 1690578--1690644 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
1690568 TCAGGGTTCG
1690578 AGGTTTAAGATTCAGGTTTA
1 AGGTTTAAGATTCAGGTTTA
* *
1690598 AGGTTTACGATTCAGAGTTCA
1 AGGTTTAAGATTCAG-GTTTA
* * *
1690619 GGGTTTTAGATTTGAGGTTTA
1 AGGTTTAAGA-TTCAGGTTTA
*
1690640 TGGTT
1 AGGTT
1690645 CAAGGTAAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
20 14 0.38
21 19 0.51
22 4 0.11
ACGTcount: A:0.24, C:0.06, G:0.28, T:0.42
Consensus pattern (20 bp):
AGGTTTAAGATTCAGGTTTA
Found at i:1691743 original size:16 final size:17
Alignment explanation
Indices: 1691714--1691751 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
1691704 AATGCTAATG
1691714 ACAATCGAACTAAAACT
1 ACAATCGAACTAAAACT
1691731 -CAATC-AACATAAAACT
1 ACAATCGAAC-TAAAACT
1691747 ACAAT
1 ACAAT
1691752 TTTTAAATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 3 0.16
16 12 0.63
17 4 0.21
ACGTcount: A:0.55, C:0.24, G:0.03, T:0.18
Consensus pattern (17 bp):
ACAATCGAACTAAAACT
Found at i:1692451 original size:12 final size:12
Alignment explanation
Indices: 1692429--1692485 Score: 64
Period size: 12 Copynumber: 4.6 Consensus size: 12
1692419 CGAGCCTTTG
1692429 TTTATTTATTTAT
1 TTTA-TTATTTAT
1692442 TTTATTATTTAT
1 TTTATTATTTAT
1692454 TATTATTATTT-T
1 T-TTATTATTTAT
1692466 GTTTATTCATTTA-
1 -TTTATT-ATTTAT
1692479 TTTATTA
1 TTTATTA
1692486 CTCCTTTTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
11 1 0.03
12 21 0.52
13 18 0.45
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (12 bp):
TTTATTATTTAT
Found at i:1692451 original size:16 final size:16
Alignment explanation
Indices: 1692430--1692463 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
1692420 GAGCCTTTGT
1692430 TTATTTATTTATT-TTA
1 TTATTTA-TTATTATTA
1692446 TTATTTATTATTATTA
1 TTATTTATTATTATTA
1692462 TT
1 TT
1692464 TTGTTTATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTATTATTATTA
Found at i:1692571 original size:5 final size:5
Alignment explanation
Indices: 1692561--1692601 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
1692551 TTGTCTTTTA
1692561 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT T
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT T
1692602 AGAGTGTTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:1695834 original size:11 final size:11
Alignment explanation
Indices: 1695818--1695849 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
1695808 AACTATTTAA
1695818 ATATAATATAT
1 ATATAATATAT
1695829 ATATAATATAT
1 ATATAATATAT
1695840 ATATAATATA
1 ATATAATATA
1695850 AATCGGTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
ATATAATATAT
Found at i:1698008 original size:17 final size:17
Alignment explanation
Indices: 1697986--1698019 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1697976 CATTACCTTT
1697986 ATTATGTGACATACACA
1 ATTATGTGACATACACA
1698003 ATTATGTGACATACACA
1 ATTATGTGACATACACA
1698020 TAGCATCTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (17 bp):
ATTATGTGACATACACA
Found at i:1707108 original size:6 final size:6
Alignment explanation
Indices: 1707099--1707152 Score: 51
Period size: 6 Copynumber: 9.3 Consensus size: 6
1707089 GTATGAATGA
** *
1707099 AATAAT AATAAT AATGTT AATAAT AATAAC AATAAAT AA-AAT AA-AAT
1 AATAAT AATAAT AATAAT AATAAT AATAAT AAT-AAT AATAAT AATAAT
1707146 AA-AAT AA
1 AATAAT AA
1707153 GGGTATAGCA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
5 15 0.37
6 22 0.54
7 4 0.10
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (6 bp):
AATAAT
Found at i:1707113 original size:9 final size:9
Alignment explanation
Indices: 1707099--1707152 Score: 51
Period size: 9 Copynumber: 6.2 Consensus size: 9
1707089 GTATGAATGA
1707099 AATAATAAT
1 AATAATAAT
**
1707108 AATAATGTT
1 AATAATAAT
1707117 AATAATAAT
1 AATAATAAT
*
1707126 AACAATAAAT
1 AATAAT-AAT
1707136 AA-AATAA-
1 AATAATAAT
1707143 AATAA-AAT
1 AATAATAAT
1707151 AA
1 AA
1707153 GGGTATAGCA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
7 4 0.11
8 6 0.16
9 22 0.59
10 5 0.14
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (9 bp):
AATAATAAT
Found at i:1708087 original size:18 final size:19
Alignment explanation
Indices: 1708064--1708099 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
1708054 GCTGGAGGCT
1708064 AGGGC-TGTTGCGGCGCTG
1 AGGGCTTGTTGCGGCGCTG
1708082 AGGGCTTGTTGCGGCGCT
1 AGGGCTTGTTGCGGCGCT
1708100 CCTTATTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.06, C:0.22, G:0.47, T:0.25
Consensus pattern (19 bp):
AGGGCTTGTTGCGGCGCTG
Found at i:1709470 original size:21 final size:21
Alignment explanation
Indices: 1709444--1709486 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1709434 GGATTAAATT
1709444 ATTAAAAATAAAAGTATAAAA
1 ATTAAAAATAAAAGTATAAAA
* **
1709465 ATTAAATATAAATTTATAAAA
1 ATTAAAAATAAAAGTATAAAA
1709486 A
1 A
1709487 AAAATACAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (21 bp):
ATTAAAAATAAAAGTATAAAA
Found at i:1710283 original size:2 final size:2
Alignment explanation
Indices: 1710276--1710300 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1710266 ACCAATGGAT
1710276 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1710301 GTGTAAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1710816 original size:26 final size:26
Alignment explanation
Indices: 1710764--1710816 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
1710754 TAAATCCTAA
* *
1710764 ATTATAAAAATAATATTTTATAAATG
1 ATTATAAAAATAATATCTGATAAATG
* * *
1710790 ATTATTAAAATTATATCTGATATATG
1 ATTATAAAAATAATATCTGATAAATG
1710816 A
1 A
1710817 AATTATTAGC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (26 bp):
ATTATAAAAATAATATCTGATAAATG
Found at i:1713682 original size:16 final size:17
Alignment explanation
Indices: 1713659--1713707 Score: 68
Period size: 16 Copynumber: 3.0 Consensus size: 17
1713649 TTTATATTTA
1713659 AGTTTAGATCATTCAAG
1 AGTTTAGATCATTCAAG
1713676 A-TTTAGATCAATT--AG
1 AGTTTAGATC-ATTCAAG
1713691 AGTTTAGATCATTCAAG
1 AGTTTAGATCATTCAAG
1713708 TTGAGTCATA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 6 0.21
16 16 0.57
17 6 0.21
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (17 bp):
AGTTTAGATCATTCAAG
Found at i:1716708 original size:24 final size:25
Alignment explanation
Indices: 1716673--1716731 Score: 61
Period size: 24 Copynumber: 2.4 Consensus size: 25
1716663 TAAGATGATT
*
1716673 ATATAA-AAAAATTCAATAAATA-AA
1 ATATAATATAAATT-AATAAATATAA
* *
1716697 ATAT-ATATAAATTATTAAATATTA
1 ATATAATATAAATTAATAAATATAA
1716721 ATATAATATAA
1 ATATAATATAA
1716732 TATAAATATT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 8 0.28
24 15 0.52
25 6 0.21
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (25 bp):
ATATAATATAAATTAATAAATATAA
Found at i:1716739 original size:11 final size:11
Alignment explanation
Indices: 1716687--1716740 Score: 50
Period size: 10 Copynumber: 5.5 Consensus size: 11
1716677 AAAAAAATTC
1716687 AATA-AATA-A
1 AATATAATATA
1716696 AATAT-ATATA
1 AATATAATATA
1716706 AAT-T-AT-TA
1 AATATAATATA
1716714 AATATTAATAT-
1 AATA-TAATATA
1716725 AATATAATATA
1 AATATAATATA
1716736 AATAT
1 AATAT
1716741 TTATAAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
8 5 0.13
9 10 0.26
10 11 0.29
11 11 0.29
12 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATAATATA
Found at i:1716754 original size:40 final size:37
Alignment explanation
Indices: 1716687--1716763 Score: 91
Period size: 40 Copynumber: 2.0 Consensus size: 37
1716677 AAAAAAATTC
** *
1716687 AATAAATAAAATATATATAAATTATTAAATATTAATAT
1 AATAAATAAAATATATATAAAAAATTAAA-AATAATAT
*
1716725 AATATAATATAAATATTTATAAAAAATTAAAAATAATAT
1 AATA-AATA-AAATATATATAAAAAATTAAAAATAATAT
1716764 GGGCAGGCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 4 0.12
39 11 0.33
40 18 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (37 bp):
AATAAATAAAATATATATAAAAAATTAAAAATAATAT
Found at i:1722720 original size:16 final size:17
Alignment explanation
Indices: 1722686--1722727 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
1722676 TAAAGGTTTT
*
1722686 TTTTTAAATACATATTA
1 TTTTTAAATACATAATA
*
1722703 TTTTTATATA-ATAATA
1 TTTTTAAATACATAATA
1722719 TTTTTAAAT
1 TTTTTAAAT
1722728 TAAAACATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTTTAAATACATAATA
Found at i:1726819 original size:19 final size:19
Alignment explanation
Indices: 1726795--1726835 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
1726785 GCTTTGTGTC
1726795 AATATATATATAATTAAAA
1 AATATATATATAATTAAAA
* * *
1726814 AATATATTTTTATTTAAAA
1 AATATATATATAATTAAAA
1726833 AAT
1 AAT
1726836 TAATTCAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AATATATATATAATTAAAA
Found at i:1729019 original size:4 final size:4
Alignment explanation
Indices: 1729010--1729039 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
1729000 AAAAGTTAAT
1729010 TACA TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TA
1729040 TGATTTGGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:1730116 original size:3 final size:3
Alignment explanation
Indices: 1730108--1730133 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
1730098 TTATCAGACA
1730108 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
1730134 ATTCAACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:1730940 original size:17 final size:18
Alignment explanation
Indices: 1730920--1730956 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
1730910 TTCTCATTTT
1730920 TTAAAAAATTA-ATAAAA
1 TTAAAAAATTATATAAAA
1730937 TT-AAAAATTATATAAAA
1 TTAAAAAATTATATAAAA
1730954 TTA
1 TTA
1730957 TTATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAAAAATTATATAAAA
Found at i:1740655 original size:32 final size:32
Alignment explanation
Indices: 1740616--1740680 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
1740606 AAAGTAAAAC
1740616 AAAATATTGACTAAAACATTAATTTTTCGATA
1 AAAATATTGACTAAAACATTAATTTTTCGATA
1740648 AAAATATTGACTAAAACATTAATTTTTCGATA
1 AAAATATTGACTAAAACATTAATTTTTCGATA
1740680 A
1 A
1740681 TTTTGGTGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.37
Consensus pattern (32 bp):
AAAATATTGACTAAAACATTAATTTTTCGATA
Found at i:1740782 original size:11 final size:11
Alignment explanation
Indices: 1740762--1740802 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
1740752 TGACATGTCA
1740762 AAAAATAATTTT
1 AAAAA-AATTTT
1740774 AAAAAAATTTT
1 AAAAAAATTTT
*
1740785 AAAAAATTTTT
1 AAAAAAATTTT
1740796 AAAAAAA
1 AAAAAAA
1740803 ATATGAAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 22 0.81
12 5 0.19
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAAAAATTTT
Found at i:1756745 original size:19 final size:20
Alignment explanation
Indices: 1756710--1756753 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
1756700 ATTTAAACTA
*
1756710 AATTTTATAACTATTTT-AT
1 AATTTTATAACAATTTTAAT
1756729 AATTTTATAA-AACTTTTAAT
1 AATTTTATAACAA-TTTTAAT
1756749 AATTT
1 AATTT
1756754 ATTTGATAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 14 0.64
20 7 0.32
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (20 bp):
AATTTTATAACAATTTTAAT
Found at i:1756752 original size:20 final size:19
Alignment explanation
Indices: 1756710--1756753 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
1756700 ATTTAAACTA
*
1756710 AATTTTATAACTATTTTAT
1 AATTTTATAACTATTTAAT
1756729 AATTTTATAAAACT-TTTAAT
1 AATTTTAT--AACTATTTAAT
1756749 AATTT
1 AATTT
1756754 ATTTGATAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 8 0.36
20 10 0.45
21 4 0.18
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (19 bp):
AATTTTATAACTATTTAAT
Found at i:1758263 original size:199 final size:196
Alignment explanation
Indices: 1757905--1758511 Score: 871
Period size: 199 Copynumber: 3.1 Consensus size: 196
1757895 AAGCCCCCCT
** * **
1757905 GGTACTTCCTTTTTTGATGATTTTCTAAATTACCTGTAAACCTGAACTAATTAAATTTGATGATA
1 GGTACTT-CTTTTTTGACAATTTTCTAAACTACCTGTAAACCCAAACTAATTAAATTTGATGATA
* * *
1757970 TTATGTACTTAA-TCGTGCTAGAATCCACAATCTCCAAGTTGCTGCAATAGCAATGCTTGAATAA
65 TTACGCACTTAAGT-GTGCTCGAATCCACAATCTCCAAGTTGCTGCAATAGC-ATGCTTGAATAA
* *
1758034 TTTGAAATTTGGGTTATTGG-TTTCCTGTGTAAACATTAGAGGAACCCTTTTTTTGAAGTAGAAC
128 TTTGAAA-TTGGGTTATTGGTTTTGCTGTGT-AACATTAGAGGAA-CCTTATTTTGAAGTAGAAC
1758098 GATGGTC
190 GATGGTC
* * *
1758105 AGTACTTCTTTTTTGACAATTTTCTAAACTACCCGTAAACCCAAACTAATTAAATTTGATGATAC
1 GGTACTTCTTTTTTGACAATTTTCTAAACTACCTGTAAACCCAAACTAATTAAATTTGATGATAT
* *
1758170 TACACACTTAAGTGTGCTCGAATCCACAACCTCCAAGTTGCTGCAATAGCTATGCTTGAATAATT
66 TACGCACTTAAGTGTGCTCGAATCCACAATCTCCAAGTTGCTGCAATAGC-ATGCTTGAATAATT
*
1758235 TGAAATTGGGTTTTTGGTTTTGCTGTGTAACATTAGAGGAACCTTATTTTGAAGTAGAACGATGG
130 TGAAATTGGGTTATTGGTTTTGCTGTGTAACATTAGAGGAACCTTATTTTGAAGTAGAACGATGG
1758300 TC
195 TC
*
1758302 GGTACTTCTTTTTTTTTTGACAA--TTCTAAACTACCTGTAAACCCAAGCTAATTAAATTTGATG
1 GGTACTTC----TTTTTTGACAATTTTCTAAACTACCTGTAAACCCAAACTAATTAAATTTGATG
* * **
1758365 ATATTACGCAGTTAAGCGTGCTCGAATCCACAATCTCTGAGTTGCTGCAATAGCAGTGCTTGAAT
62 ATATTACGCACTTAAGTGTGCTCGAATCCACAATCTCCAAGTTGCTGCAATAGCA-TGCTTGAAT
1758430 AATTTGAAATTGGGTTATTGGTTTTGCTGTGTAACATTAGAGGAACCTTATTTTGAAGTAGAACG
126 AATTTGAAATTGGGTTATTGGTTTTGCTGTGTAACATTAGAGGAACCTTATTTTGAAGTAGAACG
**
1758495 ACAGTC
191 ATGGTC
1758501 GGTACTTCTTT
1 GGTACTTCTTT
1758512 ATAGAGGCTT
Statistics
Matches: 370, Mismatches: 30, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
195 3 0.01
197 32 0.09
198 25 0.07
199 292 0.79
200 7 0.02
201 11 0.03
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (196 bp):
GGTACTTCTTTTTTGACAATTTTCTAAACTACCTGTAAACCCAAACTAATTAAATTTGATGATAT
TACGCACTTAAGTGTGCTCGAATCCACAATCTCCAAGTTGCTGCAATAGCATGCTTGAATAATTT
GAAATTGGGTTATTGGTTTTGCTGTGTAACATTAGAGGAACCTTATTTTGAAGTAGAACGATGGT
C
Found at i:1762808 original size:29 final size:29
Alignment explanation
Indices: 1762761--1762819 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
1762751 ATAAAAAGAT
* * *
1762761 TTCATTAAATAGTATAGGGGTTAAATTGA
1 TTCATTAAATAATAGAGGGGCTAAATTGA
* *
1762790 TTCATTTAATAATAGAGGGGCTAATTTGA
1 TTCATTAAATAATAGAGGGGCTAAATTGA
1762819 T
1 T
1762820 ACGGTCCCTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.39
Consensus pattern (29 bp):
TTCATTAAATAATAGAGGGGCTAAATTGA
Found at i:1763452 original size:16 final size:17
Alignment explanation
Indices: 1763431--1763468 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
1763421 TAAGATCTAT
*
1763431 TAAAAT-AATTTAAACC
1 TAAAATAAATCTAAACC
1763447 TAAAATAAATCTAAACC
1 TAAAATAAATCTAAACC
1763464 -AAAAT
1 TAAAAT
1763469 TTTCAAAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (17 bp):
TAAAATAAATCTAAACC
Found at i:1766612 original size:16 final size:16
Alignment explanation
Indices: 1766591--1766631 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
1766581 ATATAAATTC
1766591 TCAAAAA-ATGAAAAAT
1 TCAAAAATAT-AAAAAT
*
1766607 TCAAAAATATATAAAT
1 TCAAAAATATAAAAAT
1766623 TCAAAAATA
1 TCAAAAATA
1766632 AATTCAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 21 0.91
17 2 0.09
ACGTcount: A:0.66, C:0.07, G:0.02, T:0.24
Consensus pattern (16 bp):
TCAAAAATATAAAAAT
Found at i:1766634 original size:12 final size:12
Alignment explanation
Indices: 1766617--1766645 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
1766607 TCAAAAATAT
1766617 ATAAATTCAAAA
1 ATAAATTCAAAA
1766629 ATAAATTCAAAA
1 ATAAATTCAAAA
1766641 ATAAA
1 ATAAA
1766646 AATAATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAAATTCAAAA
Found at i:1766647 original size:34 final size:34
Alignment explanation
Indices: 1766579--1766649 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
1766569 TTAAATATAT
** *
1766579 ATATATAAATTCTCAAAAAATGAAAAATTCAAAA
1 ATATATAAATTCAAAAAAAATCAAAAATTCAAAA
1766613 ATATATAAATTCAAAAATAAATTCAAAAA-T-AAAA
1 ATATATAAATTCAAAAA-AAA-TCAAAAATTCAAAA
1766647 ATA
1 ATA
1766650 ATTAAACATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 22 0.69
35 4 0.12
36 6 0.19
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.27
Consensus pattern (34 bp):
ATATATAAATTCAAAAAAAATCAAAAATTCAAAA
Found at i:1766874 original size:15 final size:18
Alignment explanation
Indices: 1766854--1766890 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
1766844 TAAAACTCTT
1766854 AAAAATT-T-TAT-TTAA
1 AAAAATTATATATATTAA
1766869 AAAAATTATATATATTAA
1 AAAAATTATATATATTAA
1766887 AAAA
1 AAAA
1766891 TACTTCTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 1 0.05
17 3 0.16
18 8 0.42
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAAATTATATATATTAA
Found at i:1767776 original size:20 final size:20
Alignment explanation
Indices: 1767734--1767776 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
1767724 AGTTCAGATT
* * * *
1767734 TTTTTTTTACTTTTTTATTA
1 TTTTTTTGAATTTTTAATAA
1767754 TTTTTTTGAATTTTTAATAA
1 TTTTTTTGAATTTTTAATAA
1767774 TTT
1 TTT
1767777 GCAATCAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTTTTTGAATTTTTAATAA
Found at i:1770452 original size:179 final size:178
Alignment explanation
Indices: 1770149--1770595 Score: 534
Period size: 178 Copynumber: 2.5 Consensus size: 178
1770139 GTTTCTTTCA
* * *
1770149 AATTT-TCATTGCAATGCATAAGTAGAGCAAGCTGT-TAACTAACAATGTGCATCGTGATCGATC
1 AATTTCTCAGTGCAATGCATAAGTAGAGGAAGCTGTGTAACTAACAATGTACATCGTGATCGATC
* * *
1770212 ATTGTTGATCAATTTGCGTGCTGTTTTTTGAATCTGATTTAAGTATTTTTTCAATTTTTTAA--G
66 ATTGTTGATCAAATTGCATGCT-ATTTTTGAATCTGATTTAAGTATTTTTTCAATTTTTTAATGG
* *
1770275 AGAAAAGGGAGAAAAAAGAGGAATAGTGTT-TTTTTTTTGCTTCTTTATTCC
130 A-AAAAGAG-GAAAAAAGAGGAATAGTGTTATTTTTCTT-CTTCTTTATTCC
* *
1770326 AATTTCTCAGTGCAATGCATGAGTAGAGGAAGCTGTGTAACTAACAGTGTACATCGTGATCGATC
1 AATTTCTCAGTGCAATGCATAAGTAGAGGAAGCTGTGTAACTAACAATGTACATCGTGATCGATC
* ** * ***
1770391 ATTGTTTATCAAATTGCATGCTATTTTT-AAT-TTTTTTAAAGTTTTTTTTTGTTCATTTTTAAT
66 ATTGTTGATCAAATTGCATGCTATTTTTGAATCTGATTT-AAGTATTTTTTCAAT--TTTTTAAT
*
1770454 GGAAAAAGAGGAAAAAAGAGGAATAGTGTTGATTTTTCTTCTTCTTTATTTC
128 GGAAAAAGAGGAAAAAAGAGGAATAGTGTT-ATTTTTCTTCTTCTTTATTCC
* * * * *
1770506 AATTTCTAAGTGCAATGCATAAGCAGAGGAAGC--CGTAAGTAACAATGTACATCGTGATCTATC
1 AATTTCTCAGTGCAATGCATAAGTAGAGGAAGCTGTGTAACTAACAATGTACATCGTGATCGATC
* *
1770569 ATTGTCGATCAAGTTGCATGCTATTTT
66 ATTGTTGATCAAATTGCATGCTATTTT
1770596 ATTTTATTCT
Statistics
Matches: 233, Mismatches: 28, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
176 4 0.02
177 19 0.08
178 82 0.35
179 72 0.31
180 47 0.20
181 9 0.04
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (178 bp):
AATTTCTCAGTGCAATGCATAAGTAGAGGAAGCTGTGTAACTAACAATGTACATCGTGATCGATC
ATTGTTGATCAAATTGCATGCTATTTTTGAATCTGATTTAAGTATTTTTTCAATTTTTTAATGGA
AAAAGAGGAAAAAAGAGGAATAGTGTTATTTTTCTTCTTCTTTATTCC
Found at i:1770711 original size:186 final size:179
Alignment explanation
Indices: 1770149--1770711 Score: 519
Period size: 178 Copynumber: 3.1 Consensus size: 179
1770139 GTTTCTTTCA
* * * * *
1770149 AATTT-TCATTGCAATGCATAAGTAGAGCAAGCTG-TTAACTAACAATGTGCATCGTGATCGATC
1 AATTTCTCAGTGCAATGCATAAGCAGAGGAAGC-GCGTAACTAACAATGTACATCGTGATCGATC
* * * * ** * *
1770212 ATTGTTGATCAATTTGCGTGCTGTTTTTTGAATCTGATTT-AAGTATTTTTTC----AATTTTTT
65 ATTGTCGATCAAATTGCATGCT-ATTTTT-AAT-TTTTTTAAACT-TTTTTTCTGTTCATTTTTT
* *
1770272 AAGAGAAAAG-GGAGAAAAAAGAGGAATAGTGTT-TTTTTTTTGCTTCTTT-ATTCC
126 AAGGGAAAAGAGGA-AAAAAAGAGGAATAGTGTTGATTTTTTT-CTTCTTTAATT-C
* * * *
1770326 AATTTCTCAGTGCAATGCATGAGTAGAGGAAGCTGTGTAACTAACAGTGTACATCGTGATCGATC
1 AATTTCTCAGTGCAATGCATAAGCAGAGGAAGC-GCGTAACTAACAATGTACATCGTGATCGATC
** * *
1770391 ATTGTTTATCAAATTGCATGCTATTTTTAATTTTTTTAAAGTTTTTTTTTGTTCA-TTTTTAATG
65 ATTGTCGATCAAATTGCATGCTATTTTTAATTTTTTTAAACTTTTTTTCTGTTCATTTTTTAA-G
* *
1770455 GAAAAAGAGG-AAAAAAGAGGAATAGTGTTGATTTTTCTTCTTCTTTATTTC
129 GGAAAAGAGGAAAAAAAGAGGAATAGTGTTGATTTTT-TTCTTCTTTAATTC
* * *
1770506 AATTTCTAAGTGCAATGCATAAGCAGAGGAAGC-CGTAAGTAACAATGTACATCGTGATCTATCA
1 AATTTCTCAGTGCAATGCATAAGCAGAGGAAGCGCGTAACTAACAATGTACATCGTGATCGATCA
* **
1770570 TTGTCGATCAAGTTGCATGCTA-TTTT-ATTTTATTCT-CTCTTTTTTATCTGTTTCTAAAATTT
66 TTGTCGATCAAATTGCATGCTATTTTTAATTTT-TT-TAAACTTTTTT-TCTG-TTC----A-TT
*
1770632 TTTTAAGGGAAAAGGAGGAAAAAAAGAGGAATAGTGTTGATTCTTTTTCCTCTTTAATTC
122 TTTTAAGGGAAAA-GAGGAAAAAAAGAGGAATAGTGTTGATT-TTTTTCTTCTTTAATTC
*
1770692 AATTTCTCAGTGTAATGCAT
1 AATTTCTCAGTGCAATGCAT
1770712 GAGTGCATTG
Statistics
Matches: 324, Mismatches: 37, Indels: 41
0.81 0.09 0.10
Matches are distributed among these distances:
176 15 0.05
177 24 0.07
178 81 0.25
179 74 0.23
180 50 0.15
181 6 0.02
183 1 0.00
184 6 0.02
185 11 0.03
186 53 0.16
187 3 0.01
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (179 bp):
AATTTCTCAGTGCAATGCATAAGCAGAGGAAGCGCGTAACTAACAATGTACATCGTGATCGATCA
TTGTCGATCAAATTGCATGCTATTTTTAATTTTTTTAAACTTTTTTTCTGTTCATTTTTTAAGGG
AAAAGAGGAAAAAAAGAGGAATAGTGTTGATTTTTTTCTTCTTTAATTC
Found at i:1773885 original size:12 final size:12
Alignment explanation
Indices: 1773860--1773893 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1773850 AAACCCTTGA
*
1773860 ATGCATGCATGC
1 ATGCATGTATGC
*
1773872 ATGTATGTATGC
1 ATGCATGTATGC
1773884 ATGCATGTAT
1 ATGCATGTAT
1773894 ATATATGATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (12 bp):
ATGCATGTATGC
Found at i:1773906 original size:13 final size:14
Alignment explanation
Indices: 1773868--1773919 Score: 61
Period size: 16 Copynumber: 3.6 Consensus size: 14
1773858 GAATGCATGC
*
1773868 ATGCATGTATGTAT
1 ATGCATGTATATAT
1773882 GCATGCATGTATATAT
1 --ATGCATGTATATAT
*
1773898 ATG-ATGTATATGT
1 ATGCATGTATATAT
1773911 ATGCATGTA
1 ATGCATGTA
1773920 ATCAACCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.36
14 8 0.24
16 13 0.39
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (14 bp):
ATGCATGTATATAT
Found at i:1779044 original size:17 final size:17
Alignment explanation
Indices: 1779011--1779044 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1779001 AAAAAGTATT
* *
1779011 TTAAAAAAATTTTAAAA
1 TTAAAAAAAATTAAAAA
1779028 TTAAAAAAAATTAAAAA
1 TTAAAAAAAATTAAAAA
1779045 AGTATTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TTAAAAAAAATTAAAAA
Found at i:1779047 original size:40 final size:44
Alignment explanation
Indices: 1778975--1779056 Score: 136
Period size: 40 Copynumber: 2.0 Consensus size: 44
1778965 CCAAAAATTT
1778975 ATTTTAAAAATTAAAACAAAAATTAAAAAAAGTATTTTAAAAAA
1 ATTTTAAAAATTAAAACAAAAATTAAAAAAAGTATTTTAAAAAA
1779019 ATTTT-AAAATT-AAA-AAAAATT-AAAAAAGTATTTTAAAA
1 ATTTTAAAAATTAAAACAAAAATTAAAAAAAGTATTTTAAAA
1779057 TTAAAAAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
40 17 0.45
41 7 0.18
42 3 0.08
43 6 0.16
44 5 0.13
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (44 bp):
ATTTTAAAAATTAAAACAAAAATTAAAAAAAGTATTTTAAAAAA
Found at i:1779064 original size:8 final size:9
Alignment explanation
Indices: 1779011--1779074 Score: 51
Period size: 9 Copynumber: 7.0 Consensus size: 9
1779001 AAAAAGTATT
1779011 TTAAAAAAA
1 TTAAAAAAA
**
1779020 TT-TTAAAA
1 TTAAAAAAA
1779028 TTAAAAAAAA
1 TT-AAAAAAA
1779038 TTAAAAAAGTA
1 TTAAAAAA--A
**
1779049 TT-TTAAAA
1 TTAAAAAAA
1779057 TTAAAAAAA
1 TTAAAAAAA
1779066 TTAAAAAAA
1 TTAAAAAAA
1779075 AGTATTTTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
8 9 0.21
9 21 0.50
10 9 0.21
11 3 0.07
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.30
Consensus pattern (9 bp):
TTAAAAAAA
Done.