Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 51 of 230
Found at i:13793450 original size:15 final size:15
Alignment explanation
Indices: 13793394--13793453 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
13793384 TGTCTGATTT
*
13793394 TGATGTGTCTGATAG
1 TGATGTGTCTAATAG
* *
13793409 TGATGTGTCTATTAA
1 TGATGTGTCTAATAG
*
13793424 TGATGTATCTAATAG
1 TGATGTGTCTAATAG
*
13793439 TGATGTGGCTAATAG
1 TGATGTGTCTAATAG
13793454 GAAAAGGGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (15 bp):
TGATGTGTCTAATAG
Found at i:13796982 original size:3 final size:3
Alignment explanation
Indices: 13796974--13797002 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
13796964 TTATTTTTTC
13796974 TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
13797003 TTCTTCTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:13798214 original size:13 final size:14
Alignment explanation
Indices: 13798196--13798230 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
13798186 ATGGGGGTAG
13798196 GATTCTGTATATCT
1 GATTCTGTATATCT
*
13798210 G-TTCTGCATATCT
1 GATTCTGTATATCT
13798223 GATTCTGT
1 GATTCTGT
13798231 TATTTGTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (14 bp):
GATTCTGTATATCT
Found at i:13798669 original size:15 final size:16
Alignment explanation
Indices: 13798649--13798679 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
13798639 AAAAAAAAGA
13798649 AATAGAAA-GAAACAG
1 AATAGAAACGAAACAG
13798664 AATAGAAACGAAACAG
1 AATAGAAACGAAACAG
13798680 GGAGAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.65, C:0.10, G:0.19, T:0.06
Consensus pattern (16 bp):
AATAGAAACGAAACAG
Found at i:13798718 original size:25 final size:25
Alignment explanation
Indices: 13798633--13798707 Score: 69
Period size: 26 Copynumber: 2.9 Consensus size: 25
13798623 TATAATAAAT
* * **
13798633 AAAAGAAAAAAAAAGAAATAGAAAGA
1 AAAAG-AAAGAAAAGAAAAAGGGAGA
* * *
13798659 AACAGAATAGAAACGAAACAGGGAGA
1 AAAAGAA-AGAAAAGAAAAAGGGAGA
13798685 AAAAGAAAGAAAAGAAAAAGGGA
1 AAAAGAAAGAAAAGAAAAAGGGA
13798708 AAGAAATAAA
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
25 16 0.41
26 23 0.59
ACGTcount: A:0.71, C:0.04, G:0.23, T:0.03
Consensus pattern (25 bp):
AAAAGAAAGAAAAGAAAAAGGGAGA
Found at i:13798872 original size:88 final size:88
Alignment explanation
Indices: 13798723--13798899 Score: 354
Period size: 88 Copynumber: 2.0 Consensus size: 88
13798713 ATAAAGGAGA
13798723 AGTTAAGGTTTCAAAGTTCAAAGCTTAATTGGTAAGCCAATTTATTCAATTTTCTTGTAATTTTT
1 AGTTAAGGTTTCAAAGTTCAAAGCTTAATTGGTAAGCCAATTTATTCAATTTTCTTGTAATTTTT
13798788 ATGTTTTTAGAATCCTAGTATTC
66 ATGTTTTTAGAATCCTAGTATTC
13798811 AGTTAAGGTTTCAAAGTTCAAAGCTTAATTGGTAAGCCAATTTATTCAATTTTCTTGTAATTTTT
1 AGTTAAGGTTTCAAAGTTCAAAGCTTAATTGGTAAGCCAATTTATTCAATTTTCTTGTAATTTTT
13798876 ATGTTTTTAGAATCCTAGTATTC
66 ATGTTTTTAGAATCCTAGTATTC
13798899 A
1 A
13798900 ATATTACTTA
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 89 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (88 bp):
AGTTAAGGTTTCAAAGTTCAAAGCTTAATTGGTAAGCCAATTTATTCAATTTTCTTGTAATTTTT
ATGTTTTTAGAATCCTAGTATTC
Found at i:13799534 original size:11 final size:11
Alignment explanation
Indices: 13799518--13799542 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
13799508 AATTGGTATA
13799518 TATATATTGAT
1 TATATATTGAT
13799529 TATATATTGAT
1 TATATATTGAT
13799540 TAT
1 TAT
13799543 TTGAATTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (11 bp):
TATATATTGAT
Found at i:13801999 original size:22 final size:22
Alignment explanation
Indices: 13801974--13802043 Score: 88
Period size: 22 Copynumber: 3.2 Consensus size: 22
13801964 ATTTTTTTTA
13801974 ATTAATAATAATATATTTTATT
1 ATTAATAATAATATATTTTATT
* ** *
13801996 ATTAATAATATTATAAATTAAT
1 ATTAATAATAATATATTTTATT
13802018 ATTAA-AATAATATATTTTTATT
1 ATTAATAATAATATA-TTTTATT
13802040 ATTA
1 ATTA
13802044 TCATATAATA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
21 8 0.21
22 31 0.79
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
ATTAATAATAATATATTTTATT
Found at i:13802028 original size:11 final size:12
Alignment explanation
Indices: 13801992--13802030 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
13801982 TAATATATTT
*
13801992 TATTATTAATAA
1 TATTATAAATAA
13802004 TATTATAAATTAA
1 TATTATAAA-TAA
13802017 TATTA-AAATAA
1 TATTATAAATAA
13802028 TAT
1 TAT
13802031 ATTTTTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 6 0.24
12 11 0.44
13 8 0.32
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
TATTATAAATAA
Found at i:13802074 original size:22 final size:24
Alignment explanation
Indices: 13801971--13802075 Score: 71
Period size: 22 Copynumber: 4.4 Consensus size: 24
13801961 TGAATTTTTT
*
13801971 TTAATTAATAATA-ATATATT-TTA
1 TTAATTAATAATATATA-ATTAATA
13801994 TT-ATTAATAATATTATAAATTAATA
1 TTAATTAATAATA-TAT-AATTAATA
** *
13802019 TTAA--AATAATATATTTTTATTA
1 TTAATTAATAATATATAATTAATA
13802041 TTATCATATAATAATA-A-AATTAATA
1 TTA--AT-TAATAATATATAATTAATA
13802066 TTAATTAATA
1 TTAATTAATA
13802076 TAATAGTATA
Statistics
Matches: 65, Mismatches: 7, Indels: 21
0.70 0.08 0.23
Matches are distributed among these distances:
22 23 0.35
23 7 0.11
24 13 0.20
25 13 0.20
26 2 0.03
27 7 0.11
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (24 bp):
TTAATTAATAATATATAATTAATA
Found at i:13803444 original size:43 final size:43
Alignment explanation
Indices: 13803396--13803490 Score: 181
Period size: 43 Copynumber: 2.2 Consensus size: 43
13803386 AAATAGCATA
13803396 ATATATTAATATTTAATAAATTTATAAAATTGAATATAATTTG
1 ATATATTAATATTTAATAAATTTATAAAATTGAATATAATTTG
13803439 ATATATTAATATTTAATAAATTTATAAAATTGAATATAATTTG
1 ATATATTAATATTTAATAAATTTATAAAATTGAATATAATTTG
*
13803482 ATAAATTAA
1 ATATATTAA
13803491 AATAATAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (43 bp):
ATATATTAATATTTAATAAATTTATAAAATTGAATATAATTTG
Found at i:13803465 original size:8 final size:9
Alignment explanation
Indices: 13803406--13803488 Score: 50
Period size: 9 Copynumber: 9.3 Consensus size: 9
13803396 ATATATTAAT
13803406 ATTTAATAA
1 ATTTAATAA
13803415 ATTT-ATAAA
1 ATTTAAT-AA
*
13803424 ATTGAATATA
1 ATTTAATA-A
* *
13803434 ATTTGATAT
1 ATTTAATAA
13803443 A-TTAAT--
1 ATTTAATAA
13803449 ATTTAATAA
1 ATTTAATAA
13803458 ATTT-ATAAA
1 ATTTAAT-AA
*
13803467 ATTGAATATA
1 ATTTAATA-A
*
13803477 ATTTGATAA
1 ATTTAATAA
13803486 ATT
1 ATT
13803489 AAAATAATAA
Statistics
Matches: 57, Mismatches: 8, Indels: 18
0.69 0.10 0.22
Matches are distributed among these distances:
6 1 0.02
7 5 0.09
8 8 0.14
9 25 0.44
10 18 0.32
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (9 bp):
ATTTAATAA
Found at i:13803485 original size:20 final size:18
Alignment explanation
Indices: 13803410--13803486 Score: 64
Period size: 18 Copynumber: 3.8 Consensus size: 18
13803400 ATTAATATTT
13803410 AATAAATTTATAAAATTG
1 AATAAATTTATAAAATTG
*
13803428 AATATAATTTGATATATTAATATTT
1 AATA-AA-TT--TATA--AA-ATTG
13803453 AATAAATTTATAAAATTG
1 AATAAATTTATAAAATTG
13803471 AATATAATTTGATAAA
1 AATA-AATTT-ATAAA
13803487 TTAAAATAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
18 11 0.23
19 9 0.19
20 7 0.15
21 4 0.08
22 4 0.08
23 2 0.04
24 4 0.08
25 7 0.15
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (18 bp):
AATAAATTTATAAAATTG
Found at i:13804008 original size:15 final size:15
Alignment explanation
Indices: 13803988--13804017 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13803978 TATTTGATAG
*
13803988 TTTTAATATTATTTA
1 TTTTAATAATATTTA
13804003 TTTTAATAATATTTA
1 TTTTAATAATATTTA
13804018 CATAATGGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTAATAATATTTA
Found at i:13808448 original size:27 final size:27
Alignment explanation
Indices: 13808418--13808575 Score: 163
Period size: 27 Copynumber: 5.9 Consensus size: 27
13808408 AAAAGATACT
* *
13808418 CTTTCATATTGTGCCATAAAGGTGTTC
1 CTTTCATATTGCGCCACAAAGGTGTTC
* * *
13808445 CTTTTATATTGTGCCACAAAGGGGTTC
1 CTTTCATATTGCGCCACAAAGGTGTTC
* * *
13808472 TTTTCATATTGCGACACAAAGGCGTTC
1 CTTTCATATTGCGCCACAAAGGTGTTC
* * * *
13808499 ATTTCATATTGCGCTACAAAAGCGTTC
1 CTTTCATATTGCGCCACAAAGGTGTTC
* * * *
13808526 TTTTCATATTACACCACAAAGGTATTC
1 CTTTCATATTGCGCCACAAAGGTGTTC
*
13808553 CTTTCATATTGAGCCACAAAGGT
1 CTTTCATATTGCGCCACAAAGGT
13808576 TTTCTTTTAG
Statistics
Matches: 108, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 108 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.35
Consensus pattern (27 bp):
CTTTCATATTGCGCCACAAAGGTGTTC
Found at i:13808477 original size:54 final size:54
Alignment explanation
Indices: 13808419--13808583 Score: 186
Period size: 54 Copynumber: 3.1 Consensus size: 54
13808409 AAAGATACTC
* * * * *
13808419 TTTCATATTGTGCCATAAAGGTGTTCCTTTTATATTGTGCCACAAAGGGGTTCT
1 TTTCATATTGCGCCACAAAGGTGTTCCTTTCATATTGAGCCACAAAGGCGTTCT
* * * * * *
13808473 TTTCATATTGCGACACAAAGGCGTTCATTTCATATTGCGCTACAAAAGCGTTCT
1 TTTCATATTGCGCCACAAAGGTGTTCCTTTCATATTGAGCCACAAAGGCGTTCT
* * * **
13808527 TTTCATATTACACCACAAAGGTATTCCTTTCATATTGAGCCACAAAGGTTTTCT
1 TTTCATATTGCGCCACAAAGGTGTTCCTTTCATATTGAGCCACAAAGGCGTTCT
13808581 TTT
1 TTT
13808584 AGGGCTCGCT
Statistics
Matches: 90, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (54 bp):
TTTCATATTGCGCCACAAAGGTGTTCCTTTCATATTGAGCCACAAAGGCGTTCT
Found at i:13812444 original size:25 final size:25
Alignment explanation
Indices: 13812415--13812487 Score: 67
Period size: 25 Copynumber: 2.9 Consensus size: 25
13812405 GCACTCTCTC
*
13812415 GAGCCATATAATGGGAAGCTCATGT
1 GAGCCATATAATGGGAAGCTCATCT
* *
13812440 GAGCCATGTAATGAGG-AGCTTATCT
1 GAGCCATATAATG-GGAAGCTCATCT
* ** *
13812465 GGGCTTTATAACGGGAAGCTCAT
1 GAGCCATATAATGGGAAGCTCAT
13812488 AAGAACCATA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
24 2 0.05
25 33 0.89
26 2 0.05
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (25 bp):
GAGCCATATAATGGGAAGCTCATCT
Found at i:13813129 original size:21 final size:21
Alignment explanation
Indices: 13813105--13813147 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
13813095 TAAATTTAAC
*
13813105 TCAATTTAATACAATTCATAT
1 TCAATTAAATACAATTCATAT
*
13813126 TCAATTAAATCCAATTCATAT
1 TCAATTAAATACAATTCATAT
13813147 T
1 T
13813148 TTAGGTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (21 bp):
TCAATTAAATACAATTCATAT
Found at i:13814306 original size:27 final size:27
Alignment explanation
Indices: 13814196--13814298 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
13814186 ACTTATTATA
* * *
13814196 TTTCATATTGCACCAAAAAGGTGTTCC
1 TTTCATATTGCGCCACAAAGGCGTTCC
* *
13814223 TTTCATATTGCGCCACAGAGGCTTTCC
1 TTTCATATTGCGCCACAAAGGCGTTCC
* *
13814250 TTTCATATTGCGCCACAAAGACGTTCT
1 TTTCATATTGCGCCACAAAGGCGTTCC
*
13814277 TTTCATATTACGCCACAAAGGC
1 TTTCATATTGCGCCACAAAGGC
13814299 ATTCTTTTAG
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (27 bp):
TTTCATATTGCGCCACAAAGGCGTTCC
Found at i:13817257 original size:28 final size:26
Alignment explanation
Indices: 13817202--13817261 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 26
13817192 TCAGTTCGTG
*
13817202 TAATTAAATTGTGTATTTATATGCTT
1 TAATTAAATTGTGTATTGATATGCTT
*
13817228 TAATTGAAATATGTGTATGTGA-ATGGTT
1 TAATT-AAAT-TGTGTAT-TGATATGCTT
13817256 TAATTA
1 TAATTA
13817262 TTATGTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
26 5 0.17
27 5 0.17
28 17 0.59
29 2 0.07
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (26 bp):
TAATTAAATTGTGTATTGATATGCTT
Found at i:13817427 original size:25 final size:25
Alignment explanation
Indices: 13817399--13817489 Score: 105
Period size: 25 Copynumber: 3.7 Consensus size: 25
13817389 ACTGATACTC
13817399 AGCTCGTATGAGCATACCATTATTT
1 AGCTCGTATGAGCATACCATTATTT
*
13817424 AGCTCGTATGAGCTTACCATTATTT
1 AGCTCGTATGAGCATACCATTATTT
* * * *
13817449 AGCTCAG-AGGAGCTTACCGTT-TAT
1 AGCTC-GTATGAGCATACCATTATTT
*
13817473 CGCTCGTATGAGCATAC
1 AGCTCGTATGAGCATAC
13817490 ATGTGCAAGA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.02
24 14 0.25
25 41 0.72
26 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (25 bp):
AGCTCGTATGAGCATACCATTATTT
Found at i:13830830 original size:27 final size:26
Alignment explanation
Indices: 13830800--13830872 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 26
13830790 TTCAAGGTTC
*
13830800 GAGTTTAGGGTTTTGGGTTCAAATTTT
1 GAGTTTAGGG-TTTGGGTTCAAATTTA
* * *
13830827 GAGTTTAGAGTTCGAGGTTCAAGTTTA
1 GAGTTTAGGGTTTG-GGTTCAAATTTA
13830854 GAGTTT-GGGTTTGGGTTCA
1 GAGTTTAGGGTTTGGGTTCA
13830873 GGGTTCAAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 6 0.15
26 8 0.21
27 25 0.64
ACGTcount: A:0.19, C:0.05, G:0.33, T:0.42
Consensus pattern (26 bp):
GAGTTTAGGGTTTGGGTTCAAATTTA
Found at i:13856794 original size:32 final size:32
Alignment explanation
Indices: 13856751--13856827 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
13856741 CAAAACAAAT
*
13856751 TATGAAAAGTTACGAATG-TAAGGAGACTTGAA
1 TATGAAAAGTTACGAATGCGAA-GAGACTTGAA
* **
13856783 TATGAAGAGTTAATAATGCGAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCGAAGAGACTTGAA
*
13856815 GATGAAAAGTTAC
1 TATGAAAAGTTAC
13856828 ACACATGCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
32 35 0.95
33 2 0.05
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCGAAGAGACTTGAA
Found at i:13856922 original size:36 final size:38
Alignment explanation
Indices: 13856836--13856922 Score: 115
Period size: 36 Copynumber: 2.3 Consensus size: 38
13856826 ACACACATGC
* *
13856836 ATGAATAGTCACAACTCTTATAGTATTTAAGTTATGTAA
1 ATGAATAGTCACAACTC-TATAGTATTTAAGTGATATAA
* *
13856875 ATGAATAGTCACAACTC-CTAGTATTT-AGTGATATAG
1 ATGAATAGTCACAACTCTATAGTATTTAAGTGATATAA
13856911 ATGAATAGTCAC
1 ATGAATAGTCAC
13856923 TTACAACTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
36 19 0.43
37 8 0.18
39 17 0.39
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (38 bp):
ATGAATAGTCACAACTCTATAGTATTTAAGTGATATAA
Found at i:13861119 original size:22 final size:21
Alignment explanation
Indices: 13861078--13861119 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
13861068 ATGTTAAGGT
*
13861078 AAAATATATTTTTCTCTTAAA
1 AAAATATATTTTACTCTTAAA
13861099 AAAATAATATTTATACT-TTAA
1 AAAAT-ATATTT-TACTCTTAA
13861120 TTTAGTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 5 0.28
22 10 0.56
23 3 0.17
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (21 bp):
AAAATATATTTTACTCTTAAA
Found at i:13862455 original size:21 final size:22
Alignment explanation
Indices: 13862420--13862460 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
13862410 TTGAGAATTT
* *
13862420 ACTTTGAAAATTTTTCATTAAA
1 ACTTTGAAAAATTTTAATTAAA
13862442 ACTTT-AAAAATTTTAATTA
1 ACTTTGAAAAATTTTAATTA
13862461 CACTAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (22 bp):
ACTTTGAAAAATTTTAATTAAA
Found at i:13865859 original size:22 final size:22
Alignment explanation
Indices: 13865834--13865902 Score: 111
Period size: 22 Copynumber: 3.1 Consensus size: 22
13865824 ACAAATTCCA
*
13865834 TCTCAATTTCATTCAAAAATTC
1 TCTCAATTTCCTTCAAAAATTC
*
13865856 TCTCAAATTCCTTCAAAAATTC
1 TCTCAATTTCCTTCAAAAATTC
*
13865878 TCTCAATTTCCTTCCAAAATTC
1 TCTCAATTTCCTTCAAAAATTC
13865900 TCT
1 TCT
13865903 TAAACTCTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.41
Consensus pattern (22 bp):
TCTCAATTTCCTTCAAAAATTC
Found at i:13865937 original size:52 final size:52
Alignment explanation
Indices: 13865855--13865954 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
13865845 TTCAAAAATT
* * * *
13865855 CTCTCAAATTCCTTCAAAAATTCTCTCAATTTCCTTCCAAAATTCTCTTAAA
1 CTCTCAAATTCCTTCAAAAATCCTCACAATTTCCTTCAAAAAATCTCTTAAA
*
13865907 CTCTCAAATTCCTTCTAAAATCCTCACAATTTCCTTCAAAAAATCTCT
1 CTCTCAAATTCCTTCAAAAATCCTCACAATTTCCTTCAAAAAATCTCT
13865955 CAACTCCATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (52 bp):
CTCTCAAATTCCTTCAAAAATCCTCACAATTTCCTTCAAAAAATCTCTTAAA
Found at i:13866055 original size:28 final size:29
Alignment explanation
Indices: 13865995--13866055 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
13865985 AATTTCATTT
*
13865995 TTTTTAAGAAAATTATAAATATTTTTATT
1 TTTTTAAGAAAATTATAAATATTTTTATA
* *
13866024 TTTTTAA-ATAATTTTAAA-ATTTTTAATA
1 TTTTTAAGAAAATTATAAATATTTTT-ATA
13866052 TTTT
1 TTTT
13866056 CAACAATGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 6 0.21
28 15 0.54
29 7 0.25
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (29 bp):
TTTTTAAGAAAATTATAAATATTTTTATA
Found at i:13866055 original size:29 final size:29
Alignment explanation
Indices: 13865993--13866048 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
13865983 TCAATTTCAT
13865993 TTTTTTTAAGAAAATTATAAATATTTTTA
1 TTTTTTTAAGAAAATTATAAATATTTTTA
* *
13866022 TTTTTTTAA-ATAATTTTAAA-ATTTTTA
1 TTTTTTTAAGAAAATTATAAATATTTTTA
13866049 ATATTTTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 7 0.28
28 9 0.36
29 9 0.36
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (29 bp):
TTTTTTTAAGAAAATTATAAATATTTTTA
Found at i:13866175 original size:14 final size:15
Alignment explanation
Indices: 13866146--13866179 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
13866136 AAATTTTAAA
13866146 TTTTATTTAAGATAT
1 TTTTATTTAAGATAT
*
13866161 TTTTATTTATG-TAT
1 TTTTATTTAAGATAT
13866175 TTTTA
1 TTTTA
13866180 GATAAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTATTTAAGATAT
Found at i:13868352 original size:29 final size:29
Alignment explanation
Indices: 13868310--13868545 Score: 436
Period size: 29 Copynumber: 8.1 Consensus size: 29
13868300 ATATTATTTG
13868310 ATTTAATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
*
13868339 ATTTAATTATAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
*
13868368 ATTTGATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
13868397 ATTTAATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
*
13868426 ATTTGATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
*
13868455 ATTTAATTAAAAAACCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
13868484 ATTTAATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
13868513 ATTTAATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
13868542 ATTT
1 ATTT
13868546 GACAATCTTA
Statistics
Matches: 199, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 199 1.00
ACGTcount: A:0.44, C:0.27, G:0.01, T:0.29
Consensus pattern (29 bp):
ATTTAATTAAAAACCCTAACCCTAACCTA
Found at i:13871945 original size:85 final size:85
Alignment explanation
Indices: 13871779--13871984 Score: 342
Period size: 85 Copynumber: 2.4 Consensus size: 85
13871769 CCCAAACTTG
*
13871779 CAACTGTAGCAAAATCGCGTCCACGAGGGCACGA-TTGAAACTATTTGCTCAGAAACGTCAAAAA
1 CAACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTGAAACTATTTACTCAGAAACGTCAAAAA
*
13871843 ATAATTATTTCGTACATGAC
66 ATAATTATTTCCTACATGAC
*
13871863 CAACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTGACACTATTTACTCAGAAACGTCAAAAA
1 CAACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTGAAACTATTTACTCAGAAACGTCAAAAA
13871928 ATAATTATTTCCTACATGAC
66 ATAATTATTTCCTACATGAC
* * * *
13871948 CAATTGTAGTAAAATCGTGTCCACGAGGGCGCGATTT
1 CAACTGTAGCAAAATCGCGTCCACGAGGGCACGATTT
13871985 CACAATTTCT
Statistics
Matches: 114, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
84 34 0.30
85 80 0.70
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (85 bp):
CAACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTGAAACTATTTACTCAGAAACGTCAAAAA
ATAATTATTTCCTACATGAC
Found at i:13877350 original size:30 final size:30
Alignment explanation
Indices: 13877264--13877351 Score: 115
Period size: 30 Copynumber: 3.0 Consensus size: 30
13877254 AATACCCGGG
* *
13877264 AATA-AGTTGCTCACATAAGCTGACAGTAC
1 AATAGAGTTGCTCACACAAGCTGACATTAC
* * * *
13877293 ATTAGGGTTGCTCACACAAACTAACATTAC
1 AATAGAGTTGCTCACACAAGCTGACATTAC
13877323 AATAGAGTTGCTCACACAAGCTGACATTA
1 AATAGAGTTGCTCACACAAGCTGACATTA
13877352 TATCGAGGTT
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
29 3 0.06
30 45 0.94
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.25
Consensus pattern (30 bp):
AATAGAGTTGCTCACACAAGCTGACATTAC
Found at i:13879269 original size:22 final size:22
Alignment explanation
Indices: 13879244--13879310 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
13879234 TGTACATAAA
*
13879244 AGCCTGTGTGTTATTACATGCG
1 AGCCTATGTGTTATTACATGCG
*
13879266 AGCCTATGTGTAATTACATGCG
1 AGCCTATGTGTTATTACATGCG
* * * *
13879288 AGTCTTTATGTTATTATATGCG
1 AGCCTATGTGTTATTACATGCG
13879310 A
1 A
13879311 ACCCTATATG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.39
Consensus pattern (22 bp):
AGCCTATGTGTTATTACATGCG
Found at i:13879331 original size:44 final size:44
Alignment explanation
Indices: 13879252--13879335 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
13879242 AAAGCCTGTG
* * *
13879252 TGTTATTACATGCGAGCCTATGTGTAATTACATGCGAGTCTTTA
1 TGTTATTACATGCGACCCTATATGTAATTAAATGCGAGTCTTTA
* *
13879296 TGTTATTATATGCGAACCCTATATGT-GTTAAATGCGAGTC
1 TGTTATTACATGCG-ACCCTATATGTAATTAAATGCGAGTC
13879336 GTGTTATATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 25 0.74
45 9 0.26
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.38
Consensus pattern (44 bp):
TGTTATTACATGCGACCCTATATGTAATTAAATGCGAGTCTTTA
Found at i:13884011 original size:6 final size:6
Alignment explanation
Indices: 13884002--13884036 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
13883992 ATTTTAAACA
13884002 AAATTT AAATTT AAATTT AAATTT AAATTT AAATT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATT
13884037 ATAATAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
AAATTT
Found at i:13884011 original size:18 final size:19
Alignment explanation
Indices: 13883990--13884035 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
13883980 ATTAAAAGTA
13883990 AAATTTTAAA-CAAAATTT
1 AAATTTTAAATCAAAATTT
**
13884008 AAA-TTTAAATTTAAATTT
1 AAATTTTAAATCAAAATTT
13884026 AAA-TTTAAAT
1 AAATTTTAAAT
13884036 TATAATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
AAATTTTAAATCAAAATTT
Found at i:13884105 original size:21 final size:22
Alignment explanation
Indices: 13884081--13884145 Score: 53
Period size: 21 Copynumber: 2.9 Consensus size: 22
13884071 AACAGAAATA
13884081 TTAAGATAAATATTATTTAT-C
1 TTAAGATAAATATTATTTATAC
* *
13884102 TTAATGATATTAAATAATATTTATAT
1 TTAA-G--A-TAAATATTATTTATAC
*
13884128 TTATGAT-AATATTATTTA
1 TTAAGATAAATATTATTTA
13884146 GCTTTATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
21 14 0.40
22 2 0.06
23 1 0.03
24 1 0.03
25 14 0.40
26 3 0.09
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (22 bp):
TTAAGATAAATATTATTTATAC
Found at i:13884116 original size:25 final size:25
Alignment explanation
Indices: 13884087--13884135 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
13884077 AATATTAAGA
* *
13884087 TAAATATTATTTATCTTAATGATAT
1 TAAATAATATTTATATTAATGATAT
*
13884112 TAAATAATATTTATATTTATGATA
1 TAAATAATATTTATATTAATGATA
13884136 ATATTATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (25 bp):
TAAATAATATTTATATTAATGATAT
Found at i:13884664 original size:35 final size:34
Alignment explanation
Indices: 13884623--13884692 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 34
13884613 AAACTTTCTA
* *
13884623 TCATTTACTTCTTATTATGGATTATCAAATATATT
1 TCATTTAATTCTTATTATGAATTATCAAATA-ATT
*
13884658 TCATTTAATTTTTATTATGAATTATCAAATAATT
1 TCATTTAATTCTTATTATGAATTATCAAATAATT
13884692 T
1 T
13884693 TTAAAAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 4 0.12
35 28 0.88
ACGTcount: A:0.34, C:0.09, G:0.04, T:0.53
Consensus pattern (34 bp):
TCATTTAATTCTTATTATGAATTATCAAATAATT
Found at i:13896952 original size:35 final size:35
Alignment explanation
Indices: 13896898--13896964 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
13896888 ACTGTCTGTT
*
13896898 TGGTGTGTTTCGGAGGGACTAGCTCTTT-TGAGTAA
1 TGGTGTGTTTCAGAGGGACTAGCT-TTTATGAGTAA
**
13896933 TGGTGTGTTTCAGTTGGACTAGCTTTTATGAG
1 TGGTGTGTTTCAGAGGGACTAGCTTTTATGAG
13896965 CATTGGTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 3 0.11
35 25 0.89
ACGTcount: A:0.16, C:0.10, G:0.33, T:0.40
Consensus pattern (35 bp):
TGGTGTGTTTCAGAGGGACTAGCTTTTATGAGTAA
Found at i:13899768 original size:43 final size:44
Alignment explanation
Indices: 13899677--13899839 Score: 118
Period size: 43 Copynumber: 3.8 Consensus size: 44
13899667 CGGTTTTTCT
* * ** * * **
13899677 AATGATGC-ACTGTGTATACCGGTATAATTACTTAAGCTTGTTT
1 AATGATGCAACTGTATGTACCAATATAATTGCTTCAGCTTGTCC
* * * *
13899720 GATGATGCGA-TGTATGTACCATTATAATTGCTTCGGCTTGTCC
1 AATGATGCAACTGTATGTACCAATATAATTGCTTCAGCTTGTCC
* * *
13899763 AATGATG-AACTGTGTGTTCTAATATAATTGCTTCAGCTTGTCC
1 AATGATGCAACTGTATGTACCAATATAATTGCTTCAGCTTGTCC
* * ** *
13899806 GATGATGC-ACTGTGTGTGTCAATATAATTACTTC
1 AATGATGCAACTGTATGTACCAATATAATTGCTTC
13899840 GACATGACCG
Statistics
Matches: 95, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
42 1 0.01
43 93 0.98
44 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (44 bp):
AATGATGCAACTGTATGTACCAATATAATTGCTTCAGCTTGTCC
Found at i:13899851 original size:43 final size:43
Alignment explanation
Indices: 13899764--13899863 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 43
13899754 GGCTTGTCCA
* * * *
13899764 ATGATGAACTGTGTGTTCTAATATAATTGCTTCAGCTTGTCCG
1 ATGATGCACTGTGTGTTCTAATATAATTACTTCAGCATGACCG
13899807 ATGATGCACTGTGTGTGTC-AATATAATTACTTC-GACATGACCG
1 ATGATGCACTGTGTGT-TCTAATATAATTACTTCAG-CATGACCG
13899850 ATGATGCACTGTGT
1 ATGATGCACTGTGT
13899864 TTGCCAGTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
42 1 0.02
43 48 0.94
44 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (43 bp):
ATGATGCACTGTGTGTTCTAATATAATTACTTCAGCATGACCG
Found at i:13899883 original size:86 final size:84
Alignment explanation
Indices: 13899677--13899901 Score: 207
Period size: 86 Copynumber: 2.6 Consensus size: 84
13899667 CGGTTTTTCT
* * * * *
13899677 AATGATGCACTGTGTATACCGGTATAATTACTTAAGCTTGTTTGATGATGCGATGTATGTACCAT
1 AATGATGCACTGTGT-TTCCAGTATAATTACTTCAGCTTGTCTGATGATGC-ATGTATGTACCAA
* * * *
13899742 TATAATTGCTTCGGCTTGTCC
64 TATAATTACTTCGACATGACC
* * * * * * **
13899763 AATGATGAACTGTGTGTTCTAATATAATTGCTTCAGCTTGTCCGATGATGCACTGTGTGTGTCAA
1 AATGATGCACTGTGT-TTCCAGTATAATTACTTCAGCTTGTCTGATGATGCA-TGTATGTACCAA
13899828 TATAATTACTTCGACATGACC
64 TATAATTACTTCGACATGACC
* * * * *
13899849 GATGATGCACTGTGTTTGCCAGTATATTTCCTTCAGTTTATCTGATGATGCAT
1 AATGATGCACTGTGTTT-CCAGTATAATTACTTCAGCTTGTCTGATGATGCAT
13899902 TACGTGTGCC
Statistics
Matches: 110, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
85 4 0.04
86 106 0.96
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.38
Consensus pattern (84 bp):
AATGATGCACTGTGTTTCCAGTATAATTACTTCAGCTTGTCTGATGATGCATGTATGTACCAATA
TAATTACTTCGACATGACC
Found at i:13899944 original size:43 final size:43
Alignment explanation
Indices: 13899847--13899945 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
13899837 TTCGACATGA
* ** * *
13899847 CCGATGATGCACTGTGTTTGCCAGTATATTTCCTTCAGTTTAT
1 CCGATGATGCATTACGTGTGCCAGTATATTTCCTTCAATTTAT
* * *
13899890 CTGATGATGCATTACGTGTGCCATTATATTTCCTTTAATTTAT
1 CCGATGATGCATTACGTGTGCCAGTATATTTCCTTCAATTTAT
13899933 CCGATGATGCATT
1 CCGATGATGCATT
13899946 GCGATGCCAG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.42
Consensus pattern (43 bp):
CCGATGATGCATTACGTGTGCCAGTATATTTCCTTCAATTTAT
Found at i:13904620 original size:24 final size:25
Alignment explanation
Indices: 13904574--13904620 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
13904564 TGGCCCTCTT
* * *
13904574 GAGCTTTCCGTTATATGGTTCTTGC
1 GAGCTTCCCGTTATATAGCTCTTGC
13904599 GAGCTTCCCGTTA-ATAGCTCTT
1 GAGCTTCCCGTTATATAGCTCTT
13904621 CAGAGCATCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 7 0.37
25 12 0.63
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.40
Consensus pattern (25 bp):
GAGCTTCCCGTTATATAGCTCTTGC
Found at i:13904724 original size:26 final size:26
Alignment explanation
Indices: 13904695--13904752 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
13904685 CCTAATATAT
13904695 GGCTCTTCGTGAGCTTCCCGATTAAA
1 GGCTCTTCGTGAGCTTCCCGATTAAA
* * *
13904721 GGCTCTTTGTGAGCTTCCTGATTAAT
1 GGCTCTTCGTGAGCTTCCCGATTAAA
13904747 GGCTCT
1 GGCTCT
13904753 CCGAAGCTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCGATTAAA
Found at i:13913633 original size:29 final size:30
Alignment explanation
Indices: 13913574--13913631 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
13913564 TCCGAGCCTT
*
13913574 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
13913604 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
13913632 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:13913861 original size:13 final size:13
Alignment explanation
Indices: 13913843--13913874 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
13913833 TTTCCAGCAA
13913843 TTATGAATTTATT
1 TTATGAATTTATT
13913856 TTATGAATTTATT
1 TTATGAATTTATT
*
13913869 TGATGA
1 TTATGA
13913875 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:13914116 original size:50 final size:50
Alignment explanation
Indices: 13913969--13914216 Score: 293
Period size: 50 Copynumber: 4.8 Consensus size: 50
13913959 ATTTGGGTAA
* *
13913969 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGA-C--G
*
13914025 AGAGGTCCC-TGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* *
13914074 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* * * *
13914124 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-GACG
** * *
13914174 AGAACATCCCATGTAAGACCATGTCTGGGACATGTCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
13914217 TGTTATTATC
Statistics
Matches: 170, Mismatches: 19, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
49 11 0.06
50 81 0.48
51 34 0.20
52 3 0.02
54 2 0.01
55 31 0.18
56 8 0.05
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
Found at i:13914162 original size:105 final size:102
Alignment explanation
Indices: 13913969--13914217 Score: 344
Period size: 100 Copynumber: 2.4 Consensus size: 102
13913959 ATTTGGGTAA
13913969 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
13914034 TGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 TATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
13914074 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGT-CCCTA
13914136 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
65 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* * *
13914174 AGAACATCCCATGTAAGACCATGTCTGGGACATGTCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
13914218 GTTATTATCA
Statistics
Matches: 131, Mismatches: 9, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
99 10 0.08
100 43 0.33
101 36 0.27
104 2 0.02
105 40 0.31
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (102 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCTAT
AAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:13921214 original size:29 final size:30
Alignment explanation
Indices: 13921155--13921212 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
13921145 TCCGAGCCTT
**
13921155 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATAAAAAAGTTTA
* *
13921185 GGGGCAAAATTGTAATTTTAAAAAAGTT
1 GGGGCAAAAATGTAATTATAAAAAAGTT
13921213 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATAAAAAAGTTTA
Found at i:13921442 original size:13 final size:13
Alignment explanation
Indices: 13921424--13921455 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
13921414 TTTCCAGCAA
13921424 TTATGAATTTATT
1 TTATGAATTTATT
13921437 TTATGAATTTATT
1 TTATGAATTTATT
*
13921450 TGATGA
1 TTATGA
13921456 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:13921663 original size:50 final size:50
Alignment explanation
Indices: 13921550--13921791 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
13921540 ATTTGGGTAA
* * *
13921550 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
13921606 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
13921656 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
13921706 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
13921756 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
13921792 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:13921739 original size:100 final size:103
Alignment explanation
Indices: 13921550--13921799 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
13921540 ATTTGGGTAA
13921550 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
13921615 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
13921656 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
13921718 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
13921756 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
13921800 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:13928371 original size:22 final size:22
Alignment explanation
Indices: 13928336--13928430 Score: 95
Period size: 22 Copynumber: 4.3 Consensus size: 22
13928326 CTTCGGTTCT
*
13928336 TACTGATTCTCACTTCGATGCC
1 TACTGATTCACACTTCGATGCC
*
13928358 TA-TTATTCAACACTTCGATGCC
1 TACTGATTC-ACACTTCGATGCC
* *
13928380 TACTGATTCACACTTTGGTGCC
1 TACTGATTCACACTTCGATGCC
* * *
13928402 TACT-ACTCAGCGCTTTGATGCC
1 TACTGATTCA-CACTTCGATGCC
13928424 TACTGAT
1 TACTGAT
13928431 CAGCAGTTCA
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
21 9 0.15
22 45 0.75
23 6 0.10
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (22 bp):
TACTGATTCACACTTCGATGCC
Found at i:13928384 original size:44 final size:44
Alignment explanation
Indices: 13928336--13928430 Score: 118
Period size: 44 Copynumber: 2.2 Consensus size: 44
13928326 CTTCGGTTCT
* * *
13928336 TACTGATTCTCACTTCGATGCCTATTATTCAACACTTCGATGCC
1 TACTGATTCACACTTCGATGCCTACTACTCAACACTTCGATGCC
* * * * *
13928380 TACTGATTCACACTTTGGTGCCTACTACTCAGCGCTTTGATGCC
1 TACTGATTCACACTTCGATGCCTACTACTCAACACTTCGATGCC
13928424 TACTGAT
1 TACTGAT
13928431 CAGCAGTTCA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (44 bp):
TACTGATTCACACTTCGATGCCTACTACTCAACACTTCGATGCC
Found at i:13929718 original size:111 final size:111
Alignment explanation
Indices: 13929546--13929843 Score: 481
Period size: 111 Copynumber: 2.7 Consensus size: 111
13929536 TCCCAGAAAA
13929546 CGCCGCTGAAAATAAGAATTAGCGGCGTTTTCCAGAAAGCGCCGCAAAAAACCTAAGCCCAACGA
1 CGCCGCTGAAAATAAGAATTAGCGGCGTTTTCCAGAAAGCGCCGCAAAAAACCTAAGCCCAACGA
*
13929611 CGCCGTTTACCGAACTTTAGGGGATTTAGCGGCGTTTTTAATAAAG
66 CGCCGTTTACCGAACTTTAGGGGATTTAGCGACGTTTTTAATAAAG
13929657 CGCCGCTGAAAATAAGAATTAGCGGCGTTTTCCAGAAAGCGCCGCAAAAAACCTAAGCCCAACGA
1 CGCCGCTGAAAATAAGAATTAGCGGCGTTTTCCAGAAAGCGCCGCAAAAAACCTAAGCCCAACGA
13929722 CGCCGTTTACCGAACTTTAGGGGATTTAGCGACGTTTTTAATAAAG
66 CGCCGTTTACCGAACTTTAGGGGATTTAGCGACGTTTTTAATAAAG
** * * * **
13929768 CGCCGCT-AATGCTCAGGGATTTAGTGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCA
1 CGCCGCTGAA-AAT-A-AGAATTAGCGGCGTTTTCCAGAAAGCGCCGC-AAAAAACCTAAGCCCA
13929832 ACGACGCCGTTT
62 ACGACGCCGTTT
13929844 TCTAAGCATT
Statistics
Matches: 175, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
110 2 0.01
111 118 0.67
112 1 0.01
113 26 0.15
114 28 0.16
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.21
Consensus pattern (111 bp):
CGCCGCTGAAAATAAGAATTAGCGGCGTTTTCCAGAAAGCGCCGCAAAAAACCTAAGCCCAACGA
CGCCGTTTACCGAACTTTAGGGGATTTAGCGACGTTTTTAATAAAG
Found at i:13929881 original size:114 final size:115
Alignment explanation
Indices: 13929564--13930247 Score: 664
Period size: 114 Copynumber: 6.0 Consensus size: 115
13929554 AAAATAAGAA
** * *
13929564 TTAGCGGCGTTTTCCAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTACCGAA-C-
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTT-TCTAAGCA
** *
13929626 TTTAGGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTGAA-AAT-AA-GAA
65 TTTAGGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCT-AATGCTCAAGGAT
** * *
13929675 TTAGCGGCGTTTTCCAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTACCGAA-C-
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTT-TCTAAGCA
* *
13929737 TTTAGGGGATTTAGCGACGTTTTTAATAAAGCGCCGCTAATGCTCAGGGAT
65 TTTAGGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTCAAGGAT
*
13929788 TTAGTGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCAT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCAT
* ** * * * *
13929853 TCAGGGG-TTTAATGGCGTATTTATTAAAGTGCCGCTAATGCTCAAGGCT
66 TTAGGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTCAAGGAT
* * * *
13929902 TTAGCGGCGTTTTTTA-AGAAGCGCCGCAAAAAAACCTAAGCCCAACGACACC-TTTTCTGAGCT
1 TTAGCGGCGTTTTTGAGA-AAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCA
* ** *** * *
13929965 TTTTGGGGATTTAGCTACGTTTTTAAGGGAGCGCCGCTAATGCTCATGGCT
65 TTTAGGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTCAAGGAT
* * * * *
13930016 TTAGCGGCGTTTTTGGCGAAA-CGCCGCAAAATAACCTAAGCCCAACGACGTCGTTTTTTGAG-A
1 TTAGCGGCGTTTTT-GAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCA
* ** * * * * * *
13930079 TTTCGAAGATCTAGTGGCGTTTCT-CTAGAAGCGCCGCTACTGCTCAGGGAT
65 TTTAGGGGATTTAGCGGCGTTTTTAATA-AAGCGCCGCTAATGCTCAAGGAT
* * ** * *
13930130 TTAGCGGCATTTTTGGGGTAGCGCCGCAAGAAAAA-CTAAGCCCAACGGCGCCGTTTTCTATG-A
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAA-AAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCA
* ** *
13930193 TTTGTGGGGATTTAGCGGCGTTTTTAGGAAAGCGCCTCTAATGCTCAAGGAT
65 TTT-AGGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTCAAGGAT
13930245 TTA
1 TTA
13930248 AAAATAATTT
Statistics
Matches: 477, Mismatches: 80, Indels: 28
0.82 0.14 0.05
Matches are distributed among these distances:
110 2 0.00
111 100 0.21
112 1 0.00
113 48 0.10
114 265 0.56
115 59 0.12
116 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (115 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCAT
TTAGGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTCAAGGAT
Found at i:13931437 original size:14 final size:14
Alignment explanation
Indices: 13931418--13931444 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
13931408 ATAAAAAATT
13931418 TTATACCAAATTTA
1 TTATACCAAATTTA
13931432 TTATACCAAATTT
1 TTATACCAAATTT
13931445 CATCCGTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (14 bp):
TTATACCAAATTTA
Found at i:13931686 original size:21 final size:20
Alignment explanation
Indices: 13931658--13931751 Score: 90
Period size: 21 Copynumber: 4.7 Consensus size: 20
13931648 TGTTTTGTGG
*
13931658 TTTAGGGTTAGGGGTTATGC
1 TTTAGGGTTAAGGGTTATGC
13931678 TTTATGGGTTAAAGGG--A---
1 TTTA-GGGTT-AAGGGTTATGC
*
13931695 TTTAGGGTTTATGGGTTATGC
1 TTTAGGG-TTAAGGGTTATGC
13931716 TTTAGGGGTTAAGGGTTATGC
1 TTTA-GGGTTAAGGGTTATGC
13931737 TTTAAGGGTTAAGGG
1 TTT-AGGGTTAAGGG
13931752 AGATTTAGGG
Statistics
Matches: 61, Mismatches: 3, Indels: 19
0.73 0.04 0.23
Matches are distributed among these distances:
16 7 0.11
17 6 0.10
18 1 0.02
20 5 0.08
21 34 0.56
22 8 0.13
ACGTcount: A:0.20, C:0.03, G:0.37, T:0.39
Consensus pattern (20 bp):
TTTAGGGTTAAGGGTTATGC
Found at i:13933639 original size:16 final size:16
Alignment explanation
Indices: 13933619--13933697 Score: 72
Period size: 19 Copynumber: 4.7 Consensus size: 16
13933609 CTTATAACTT
*
13933619 TGGAATATATAGTTGT
1 TGGAATATATAGTTGC
13933635 TGGAATATATTCCAGTTGC
1 TGGAATATA-T--AGTTGC
*
13933654 TGG-A-ATATACTTGC
1 TGGAATATATAGTTGC
13933668 TGGAATATATTCCAGTTGC
1 TGGAATATA-T--AGTTGC
13933687 TGGAATATATA
1 TGGAATATATA
13933698 CTTTACTAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
14 8 0.15
15 1 0.02
16 14 0.27
17 5 0.10
18 2 0.04
19 22 0.42
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (16 bp):
TGGAATATATAGTTGC
Found at i:13933657 original size:19 final size:19
Alignment explanation
Indices: 13933629--13933696 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
13933619 TGGAATATAT
*
13933629 AGTTGTTGGAATATATTCC
1 AGTTGCTGGAATATATTCC
13933648 AGTTGCTGGAATATA---C
1 AGTTGCTGGAATATATTCC
13933664 --TTGCTGGAATATATTCC
1 AGTTGCTGGAATATATTCC
13933681 AGTTGCTGGAATATAT
1 AGTTGCTGGAATATAT
13933697 ACTTTACTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
14 13 0.30
16 1 0.02
17 1 0.02
19 28 0.65
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (19 bp):
AGTTGCTGGAATATATTCC
Found at i:13933669 original size:14 final size:14
Alignment explanation
Indices: 13933650--13933676 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
13933640 TATATTCCAG
13933650 TTGCTGGAATATAC
1 TTGCTGGAATATAC
13933664 TTGCTGGAATATA
1 TTGCTGGAATATA
13933677 TTCCAGTTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (14 bp):
TTGCTGGAATATAC
Found at i:13933672 original size:33 final size:33
Alignment explanation
Indices: 13933625--13933695 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
13933615 ACTTTGGAAT
* *
13933625 ATATAGTTGTTGGAATATATTCCAGTTGCTGGA
1 ATATACTTGCTGGAATATATTCCAGTTGCTGGA
13933658 ATATACTTGCTGGAATATATTCCAGTTGCTGGA
1 ATATACTTGCTGGAATATATTCCAGTTGCTGGA
13933691 ATATA
1 ATATA
13933696 TACTTTACTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (33 bp):
ATATACTTGCTGGAATATATTCCAGTTGCTGGA
Found at i:13934544 original size:47 final size:47
Alignment explanation
Indices: 13934363--13934533 Score: 212
Period size: 47 Copynumber: 3.8 Consensus size: 47
13934353 AAAAAACGCA
*
13934363 ATATTCTTAAGCATATATTACATTACTTACATTACTTACCGAAATAT
1 ATATTCTTAAGTATATATTACATTACTTACATTACTTACCGAAATAT
* * * * *
13934410 AT-TACATAACTCA-GT-TTACTTTACTTACATTACTT----AAATAT
1 ATATTCTTAAGT-ATATATTACATTACTTACATTACTTACCGAAATAT
*
13934451 ATATTCTTAAGTATATATTACATTACTTACTTTACTTACCGAAATAT
1 ATATTCTTAAGTATATATTACATTACTTACATTACTTACCGAAATAT
*
13934498 ATATTTTTAAGTATATATTACATTACTTACATTACT
1 ATATTCTTAAGTATATATTACATTACTTACATTACT
13934534 GACTAAAATA
Statistics
Matches: 102, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
41 9 0.09
42 7 0.07
43 18 0.18
45 19 0.19
46 6 0.06
47 43 0.42
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.44
Consensus pattern (47 bp):
ATATTCTTAAGTATATATTACATTACTTACATTACTTACCGAAATAT
Found at i:13934562 original size:18 final size:18
Alignment explanation
Indices: 13934539--13934616 Score: 86
Period size: 18 Copynumber: 4.2 Consensus size: 18
13934529 TTACTGACTA
* *
13934539 AAATATGTTACATTATTT
1 AAATATATTACATTACTT
*
13934557 AAATATATTAC-TTACTA
1 AAATATATTACATTACTT
13934574 AAATTTATAATTTACATTACTT
1 AAA--TAT-A-TTACATTACTT
13934596 AAATATATTACATTACTT
1 AAATATATTACATTACTT
13934614 AAA
1 AAA
13934617 ATTTATATAT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
17 7 0.14
18 24 0.47
19 4 0.08
20 4 0.08
21 4 0.08
22 8 0.16
ACGTcount: A:0.45, C:0.09, G:0.01, T:0.45
Consensus pattern (18 bp):
AAATATATTACATTACTT
Found at i:13934571 original size:22 final size:21
Alignment explanation
Indices: 13934546--13934611 Score: 50
Period size: 17 Copynumber: 3.2 Consensus size: 21
13934536 CTAAAATATG
13934546 TTACATTATTTAAATATATTAC
1 TTACATTA-TTAAATATATTAC
* * *
13934568 TTAC--TA--AAATTTATAAT
1 TTACATTATTAAATATATTAC
13934585 TTACATTACTTAAATATATTAC
1 TTACATTA-TTAAATATATTAC
13934607 ATTAC
1 -TTAC
13934612 TTAAAATTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 11
0.65 0.12 0.22
Matches are distributed among these distances:
17 12 0.38
19 2 0.06
20 2 0.06
22 12 0.38
23 4 0.12
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (21 bp):
TTACATTATTAAATATATTAC
Found at i:13934589 original size:39 final size:41
Alignment explanation
Indices: 13934546--13934623 Score: 133
Period size: 39 Copynumber: 2.0 Consensus size: 41
13934536 CTAAAATATG
*
13934546 TTACATTATTTAAATATATTAC-TTAC-TAAAATTTATAAT
1 TTACATTACTTAAATATATTACATTACTTAAAATTTATAAT
13934585 TTACATTACTTAAATATATTACATTACTTAAAATTTATA
1 TTACATTACTTAAATATATTACATTACTTAAAATTTATA
13934624 TATATATTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
39 21 0.58
40 4 0.11
41 11 0.31
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (41 bp):
TTACATTACTTAAATATATTACATTACTTAAAATTTATAAT
Found at i:13934886 original size:12 final size:12
Alignment explanation
Indices: 13934869--13934897 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
13934859 ATACTTACAT
13934869 AACTTATATATA
1 AACTTATATATA
13934881 AACTTATATATA
1 AACTTATATATA
13934893 AACTT
1 AACTT
13934898 GCATAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.41
Consensus pattern (12 bp):
AACTTATATATA
Found at i:13934911 original size:9 final size:9
Alignment explanation
Indices: 13934893--13935222 Score: 121
Period size: 9 Copynumber: 37.8 Consensus size: 9
13934883 CTTATATATA
*
13934893 AACTTGCAT
1 AACTTACAT
13934902 AACTTACAT
1 AACTTACAT
*
13934911 AA-TAACATAAT
1 AACTTAC---AT
13934922 AACTTACAT
1 AACTTACAT
*
13934931 AA--TACAC
1 AACTTACAT
13934938 AACTTACAT
1 AACTTACAT
*
13934947 AACTTAAAT
1 AACTTACAT
13934956 AACTTACAT
1 AACTTACAT
*
13934965 -A-GTACAT
1 AACTTACAT
**
13934972 AACTTTGAT
1 AACTTACAT
*
13934981 AACTAACAT
1 AACTTACAT
* *
13934990 TA--TACAC
1 AACTTACAT
*
13934997 AAGTTACAT
1 AACTTACAT
*
13935006 AACATACACTT
1 AACTTACA--T
*
13935017 AA-ATACAT
1 AACTTACAT
13935025 AACTTACAT
1 AACTTACAT
*
13935034 AA--TACAC
1 AACTTACAT
*
13935041 AACTTAAAT
1 AACTTACAT
*
13935050 -ACATAATACAC
1 AAC-T--TACAT
13935061 AACTTA-ATT
1 AACTTACA-T
*
13935070 AATATTATACAT
1 -A-ACT-TACAT
*
13935082 AACATACAT
1 AACTTACAT
13935091 AA--TACAT
1 AACTTACAT
*
13935098 AA-TACACAT
1 AACT-TACAT
13935107 AACTTACAT
1 AACTTACAT
*
13935116 -A-GTACAT
1 AACTTACAT
*
13935123 AACTAACAT
1 AACTTACAT
*
13935132 AA--TACAC
1 AACTTACAT
*
13935139 AACTTACGT
1 AACTTACAT
*
13935148 AACTTAAAT
1 AACTTACAT
*
13935157 AAGTTACAT
1 AACTTACAT
*
13935166 AGCTTACAT
1 AACTTACAT
13935175 AA--TACAT
1 AACTTACAT
13935182 AACTTACAT
1 AACTTACAT
*
13935191 AACTTATAT
1 AACTTACAT
*
13935200 AA--AACAT
1 AACTTACAT
13935207 AACTTACAT
1 AACTTACAT
*
13935216 AATTTAC
1 AACTTAC
13935223 CTAATACATA
Statistics
Matches: 234, Mismatches: 52, Indels: 70
0.66 0.15 0.20
Matches are distributed among these distances:
7 50 0.21
8 13 0.06
9 140 0.60
10 8 0.03
11 14 0.06
12 8 0.03
13 1 0.00
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.30
Consensus pattern (9 bp):
AACTTACAT
Found at i:13934943 original size:16 final size:16
Alignment explanation
Indices: 13934922--13935145 Score: 70
Period size: 16 Copynumber: 13.4 Consensus size: 16
13934912 ATAACATAAT
13934922 AACTTACATAATACAC
1 AACTTACATAATACAC
* *
13934938 AACTTACATAACTTAAAT
1 AACTTACATAA--TACAC
* *
13934956 AACTTACATAGTACAT
1 AACTTACATAATACAC
**
13934972 AACTTTGATAACTA-AC
1 AACTTACATAA-TACAC
* * *
13934988 -ATTATACACAAGTTACAT
1 AACT-TACATAA--TACAC
* *
13935006 AACATACACTTAAATACAT
1 AACTTACA--T-AATACAC
13935025 AACTTACATAATACAC
1 AACTTACATAATACAC
13935041 AACTTAAATACATAATACAC
1 AAC-T---TACATAATACAC
13935061 AACTTA-AT--TA-A-
1 AACTTACATAATACAC
* * *
13935072 TATTATACATAACATACAT
1 AACT-TACAT-A-ATACAC
13935091 AA--TACATAATACAC
1 AACTTACATAATACAC
* *
13935105 ATAACTTACATAGTACAT
1 --AACTTACATAATACAC
*
13935123 AACTAACATAATACAC
1 AACTTACATAATACAC
13935139 AACTTAC
1 AACTTAC
13935146 GTAACTTAAA
Statistics
Matches: 153, Mismatches: 29, Indels: 52
0.65 0.12 0.22
Matches are distributed among these distances:
11 2 0.01
12 3 0.02
13 4 0.03
14 5 0.03
15 5 0.03
16 65 0.42
17 8 0.05
18 29 0.19
19 15 0.10
20 15 0.10
21 2 0.01
ACGTcount: A:0.50, C:0.20, G:0.02, T:0.29
Consensus pattern (16 bp):
AACTTACATAATACAC
Found at i:13934950 original size:25 final size:25
Alignment explanation
Indices: 13934893--13935066 Score: 81
Period size: 25 Copynumber: 7.2 Consensus size: 25
13934883 CTTATATATA
*
13934893 AACTTGCATAACTTACATAATA-AC
1 AACTTACATAACTTACATAATACAC
13934917 -A--TA-ATAACTTACATAATACAC
1 AACTTACATAACTTACATAATACAC
*
13934938 AACTTACATAACTTAAATAACTTACA-
1 AACTTACATAACTTACATAA--TACAC
* * **
13934964 TA-GTACATAACTTTGATAACTA-AC
1 AACTTACATAACTTACATAA-TACAC
* * *
13934988 -ATTATACACAAGTTACATAACATACAC
1 AACT-TACATAACTTACAT-A-ATACAC
*
13935015 TTAA-ATACATAACTTACATAATACAC
1 --AACTTACATAACTTACATAATACAC
13935041 AACTT--A-AA--TACATAATACAC
1 AACTTACATAACTTACATAATACAC
13935061 AACTTA
1 AACTTA
13935067 ATTAATATTA
Statistics
Matches: 116, Mismatches: 16, Indels: 39
0.68 0.09 0.23
Matches are distributed among these distances:
20 32 0.28
21 3 0.03
22 3 0.03
23 4 0.03
24 6 0.05
25 37 0.32
26 10 0.09
27 8 0.07
28 12 0.10
30 1 0.01
ACGTcount: A:0.49, C:0.20, G:0.02, T:0.29
Consensus pattern (25 bp):
AACTTACATAACTTACATAATACAC
Found at i:13935023 original size:28 final size:29
Alignment explanation
Indices: 13934991--13935052 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 29
13934981 AACTAACATT
* *
13934991 ATACACAAGTTACATAACATAC-ACTTAA
1 ATACACAACTTACATAACACACAACTTAA
* *
13935019 ATACATAACTTACATAATACACAACTTAA
1 ATACACAACTTACATAACACACAACTTAA
13935048 ATACA
1 ATACA
13935053 TAATACACAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 18 0.62
29 11 0.38
ACGTcount: A:0.52, C:0.21, G:0.02, T:0.26
Consensus pattern (29 bp):
ATACACAACTTACATAACACACAACTTAA
Found at i:13935054 original size:20 final size:20
Alignment explanation
Indices: 13935029--13935067 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
13935019 ATACATAACT
13935029 TACATAATACACAACTTAAA
1 TACATAATACACAACTTAAA
13935049 TACATAATACACAACTTAA
1 TACATAATACACAACTTAA
13935068 TTAATATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.21, G:0.00, T:0.26
Consensus pattern (20 bp):
TACATAATACACAACTTAAA
Found at i:13935182 original size:16 final size:16
Alignment explanation
Indices: 13935147--13935259 Score: 59
Period size: 16 Copynumber: 6.7 Consensus size: 16
13935137 ACAACTTACG
*
13935147 TAACTTAAATAAGTTACA
1 TAACTTACATAA--TACA
*
13935165 TAGCTTACATAATACA
1 TAACTTACATAATACA
*
13935181 TAACTTACATAACTTATA
1 TAACTTACATAA--TACA
*
13935199 TAA--AACATAACTTACA
1 TAACTTACATAA--TACA
* *
13935215 TAATTTACCTAATACA
1 TAACTTACATAATACA
* * *
13935231 TAAATATATATCATATCA
1 TAACT-TACATAATA-CA
13935249 TAACTTACATA
1 TAACTTACATA
13935260 GCTCATTTAT
Statistics
Matches: 74, Mismatches: 15, Indels: 13
0.73 0.15 0.13
Matches are distributed among these distances:
16 37 0.50
17 10 0.14
18 27 0.36
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.35
Consensus pattern (16 bp):
TAACTTACATAATACA
Found at i:13935189 original size:25 final size:25
Alignment explanation
Indices: 13935076--13935233 Score: 121
Period size: 25 Copynumber: 6.3 Consensus size: 25
13935066 AATTAATATT
*
13935076 ATACATAACATACATAA--TACATA
1 ATACATAACTTACATAACTTACATA
*
13935099 ATACACATAACTTACAT-A-GTACATA
1 AT--ACATAACTTACATAACTTACATA
* *
13935124 ACTAACATAA--TACACAACTTACGTA
1 A-T-ACATAACTTACATAACTTACATA
* * *
13935149 ACTTAAATAAGTTACATAGCTTACATA
1 A--TACATAACTTACATAACTTACATA
*
13935176 ATACATAACTTACATAACTTATATA
1 ATACATAACTTACATAACTTACATA
* * *
13935201 AAACATAACTTACATAATTTACCTA
1 ATACATAACTTACATAACTTACATA
13935226 ATACATAA
1 ATACATAA
13935234 ATATATATCA
Statistics
Matches: 107, Mismatches: 19, Indels: 16
0.75 0.13 0.11
Matches are distributed among these distances:
23 6 0.06
24 2 0.02
25 84 0.79
26 2 0.02
27 13 0.12
ACGTcount: A:0.49, C:0.18, G:0.03, T:0.30
Consensus pattern (25 bp):
ATACATAACTTACATAACTTACATA
Found at i:13937488 original size:43 final size:43
Alignment explanation
Indices: 13937441--13937522 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
13937431 GTAAAGGAAG
* *
13937441 CGCCGCTAAAGAATATGACCTTTAGCGGCGTTTGTGAGAGAAT
1 CGCCGCTAAAAAACATGACCTTTAGCGGCGTTTGTGAGAGAAT
* **
13937484 CGCCGTTAAAAAACATGTTCTTTAGCGGCGTTTGTGAGA
1 CGCCGCTAAAAAACATGACCTTTAGCGGCGTTTGTGAGA
13937523 AAAGCGCGGG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
CGCCGCTAAAAAACATGACCTTTAGCGGCGTTTGTGAGAGAAT
Found at i:13937591 original size:43 final size:43
Alignment explanation
Indices: 13937530--13937613 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
13937520 AGAAAAGCGC
* *
13937530 GGGAAAGGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTGT
1 GGGAAAAGCGCCGCTAAAGAACATGGTCTTTAGCGACGTTTGT
13937573 GGGAAAAGCGCCGCTAAAGAACATGGTCTTTAGCGACGTTT
1 GGGAAAAGCGCCGCTAAAGAACATGGTCTTTAGCGACGTTT
13937614 ATTTATATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (43 bp):
GGGAAAAGCGCCGCTAAAGAACATGGTCTTTAGCGACGTTTGT
Found at i:13944347 original size:18 final size:21
Alignment explanation
Indices: 13944310--13944348 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 21
13944300 TGGTGTGGCT
13944310 TGGCACAAATTATGTACCAAA
1 TGGCACAAATTATGTACCAAA
13944331 TGGC-CAAATT-T-TACCAAA
1 TGGCACAAATTATGTACCAAA
13944349 AACAAGGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 1 0.06
20 6 0.33
21 4 0.22
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.26
Consensus pattern (21 bp):
TGGCACAAATTATGTACCAAA
Found at i:13960244 original size:21 final size:21
Alignment explanation
Indices: 13960220--13960261 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
13960210 TGAATTTAAC
*
13960220 TCAATTTAATACAATTCACAT
1 TCAATTCAATACAATTCACAT
* *
13960241 TCAATTCCATCCAATTCACAT
1 TCAATTCAATACAATTCACAT
13960262 CCTAGGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.26, G:0.00, T:0.36
Consensus pattern (21 bp):
TCAATTCAATACAATTCACAT
Found at i:13960247 original size:11 final size:11
Alignment explanation
Indices: 13960231--13960263 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
13960221 CAATTTAATA
*
13960231 CAATTCACATT
1 CAATTCACATC
13960242 CAATTC-CATC
1 CAATTCACATC
13960252 CAATTCACATC
1 CAATTCACATC
13960263 C
1 C
13960264 TAGGAAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.30
Consensus pattern (11 bp):
CAATTCACATC
Found at i:13964432 original size:21 final size:19
Alignment explanation
Indices: 13964408--13964446 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
13964398 AGTTATAACC
13964408 CTTTTTATATTATGTAAATTA
1 CTTTTTATATT-TG-AAATTA
*
13964429 CTTTTTTTATTTGAAATT
1 CTTTTTATATTTGAAATT
13964447 TAATCTTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 2 0.12
21 10 0.59
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (19 bp):
CTTTTTATATTTGAAATTA
Found at i:13968147 original size:30 final size:30
Alignment explanation
Indices: 13968111--13968177 Score: 134
Period size: 30 Copynumber: 2.2 Consensus size: 30
13968101 CCCACTATTC
13968111 ATCAAGTCTTCTTAATTTTATTCCTCGTGG
1 ATCAAGTCTTCTTAATTTTATTCCTCGTGG
13968141 ATCAAGTCTTCTTAATTTTATTCCTCGTGG
1 ATCAAGTCTTCTTAATTTTATTCCTCGTGG
13968171 ATCAAGT
1 ATCAAGT
13968178 GAAGTGTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.45
Consensus pattern (30 bp):
ATCAAGTCTTCTTAATTTTATTCCTCGTGG
Found at i:13974583 original size:101 final size:102
Alignment explanation
Indices: 13974393--13974599 Score: 290
Period size: 101 Copynumber: 2.0 Consensus size: 102
13974383 AGATTTTACT
* *
13974393 GTAACTTTATGTTTTGGTCACTCAACTTGAAAATATTACAAAATGGTCACTGAACTATTCCGAAG
1 GTAACTTTATGTTTTGGTCACTCAACTTGAAAATATTAC---A---TCACTGAACCATTCAGAAG
* *
13974458 TTTTCATTTAAGTATCCGGGCTGTTATAATTACTGCTGCATTA
60 TTTTCATTTAAGTATCAGGGCTGTTATAATCACTGCTGCATTA
*
13974501 GTAACTTTATGTTTTGGTCACTCAACTTGAAAATGTTAC-TCACTGAACCATTCAGAAGTTTTCA
1 GTAACTTTATGTTTTGGTCACTCAACTTGAAAATATTACATCACTGAACCATTCAGAAGTTTTCA
* *
13974565 TTTAAGTCTCAGGGCTGTTATAATCGCTGCTGCAT
66 TTTAAGTATCAGGGCTGTTATAATCACTGCTGCAT
13974600 GGCTTTCTTT
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
101 54 0.59
108 38 0.41
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (102 bp):
GTAACTTTATGTTTTGGTCACTCAACTTGAAAATATTACATCACTGAACCATTCAGAAGTTTTCA
TTTAAGTATCAGGGCTGTTATAATCACTGCTGCATTA
Found at i:13985227 original size:3 final size:3
Alignment explanation
Indices: 13985219--13985252 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
13985209 GTGTTAAGGA
13985219 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
13985253 GTGGGATATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:13987610 original size:42 final size:42
Alignment explanation
Indices: 13987537--13987618 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
13987527 ACATGAGGGA
* * *
13987537 GATATGTTACTATTGGTTGTTGGGGAGAGTGATTTTGAAGAT
1 GATATGTTACTATTGGTTGCTGGAGAAAGTGATTTTGAAGAT
13987579 GATATGTTACTATTGAG-TGCTGGAGAAAGTGATTTTGAAG
1 GATATGTTACTATTG-GTTGCTGGAGAAAGTGATTTTGAAG
13987619 GAGTAGAAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 35 0.97
43 1 0.03
ACGTcount: A:0.27, C:0.04, G:0.32, T:0.38
Consensus pattern (42 bp):
GATATGTTACTATTGGTTGCTGGAGAAAGTGATTTTGAAGAT
Found at i:13987666 original size:33 final size:33
Alignment explanation
Indices: 13987607--13987773 Score: 194
Period size: 33 Copynumber: 5.1 Consensus size: 33
13987597 GCTGGAGAAA
* * *
13987607 GTGATTTTGAAGGAGTAGAAGCTGATGGGAAGG
1 GTGATGTTGAAGGGGTAGAAGCTGATGGGGAGG
* * *
13987640 GTGAAGTTGAAGGGGTACAAGTTGATGGGGAGG
1 GTGATGTTGAAGGGGTAGAAGCTGATGGGGAGG
* *
13987673 GTGATGCTGAAGGGGGAGAAGCTGATGGGGAGG
1 GTGATGTTGAAGGGGTAGAAGCTGATGGGGAGG
* * * *
13987706 GTGATGTAGAAAGGGTACAAGCT-ATTGGGTAGG
1 GTGATGTTGAAGGGGTAGAAGCTGA-TGGGGAGG
*
13987739 GTGATGTTGAA-GGGTAGAAGCTGATAGGGAGG
1 GTGATGTTGAAGGGGTAGAAGCTGATGGGGAGG
13987771 GTG
1 GTG
13987774 TGACTTCTAC
Statistics
Matches: 111, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
32 20 0.18
33 91 0.82
ACGTcount: A:0.28, C:0.04, G:0.47, T:0.22
Consensus pattern (33 bp):
GTGATGTTGAAGGGGTAGAAGCTGATGGGGAGG
Found at i:14005949 original size:114 final size:114
Alignment explanation
Indices: 14005712--14006120 Score: 587
Period size: 114 Copynumber: 3.6 Consensus size: 114
14005702 AAAGCACCAC
* * *
14005712 AAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTCAGGGATTTAGCGAC-GTTTT-ACGGAA
1 AAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTCGGGGATTTAGCGGCATTTTTGA-GGAA
* *
14005775 GCGCCGCTAATGCTCA-GCA-TTAGCGGCGTTTTTGAGAAAGCGCCACAA
65 GCGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAA
* * *
14005823 AAAAACCTAAGCCCAACGAC-ACGATTTTCTAAGCATTCGGGGATTTAACGGCATTTTTGAGGAA
1 AAAAACCTAAGCCCAACGACGCCG-TTTTCTGAGCATTCGGGGATTTAGCGGCATTTTTGAGGAA
14005887 GCGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAA
65 GCGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAA
* * * **
14005937 AAAAACCTAAGCCCAACAATGCCGTTTTCTGAGCATCCGGGGATTTAGCGGTGTTTTTGAGGAAG
1 AAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTCGGGGATTTAGCGGCATTTTTGAGGAAG
* *
14006002 CGCTGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCAA
66 CGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAA
* * *
14006051 AAAAACCTAGGCCCAACGACGCCGTTTTCTGAGCATTCGGGGATTTAGTGGCGA-TTTTGAGAAA
1 AAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTCGGGGATTTAGCGGC-ATTTTTGAGGAA
14006115 GCGCCG
65 GCGCCG
14006121 TAAAAAAACC
Statistics
Matches: 264, Mismatches: 27, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
110 2 0.01
111 44 0.17
112 24 0.09
113 3 0.01
114 189 0.72
115 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (114 bp):
AAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTCGGGGATTTAGCGGCATTTTTGAGGAAG
CGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAA
Found at i:14006133 original size:187 final size:188
Alignment explanation
Indices: 14005903--14006306 Score: 578
Period size: 187 Copynumber: 2.2 Consensus size: 188
14005893 CTAATGCTCA
* * *
14005903 GGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACAATGCCGTTTTCTG
1 GGGATTTAGTGGCGATTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTG
* * * * *
14005968 AGCATCCGGGGATTTAGCGGTGTTTTTGAGGAAGCGCTGCTAATGCTCAGGGCTTTAGCGGCGTT
66 AGCATCCAGGGATTTAGCGGTGTTTTTCAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTT
* * *
14006033 TTTGAGAAAGCGCCGCAAAAAAACCTAGGCCCAACGACGCCGTTTTCTGAGC-ATTCG
131 TTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTAAGCTATTCG
* * ** *
14006090 GGGATTTAGTGGCGATTTTGAGAAAGCGCCGTAAAAAAACCTAATCCCAATGACGCTGTTTTCTG
1 GGGATTTAGTGGCGATTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTG
* *
14006155 AGCATTCAGGGATTTGGCGGTGTTTTTCAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTT
66 AGCATCCAGGGATTTAGCGGTGTTTTTCAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTT
* * * *
14006220 TTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCTATTTTCTAATCTTTTCG
131 TTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTAAGCTATTCG
*
14006278 GGGATTTAGTGGC-ATTTTTAAGAAAGCGC
1 GGGATTTAGTGGCGA-TTTTGAGAAAGCGC
14006307 TGCTAATGCT
Statistics
Matches: 192, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
187 162 0.84
188 30 0.16
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (188 bp):
GGGATTTAGTGGCGATTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTG
AGCATCCAGGGATTTAGCGGTGTTTTTCAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTT
TTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTAAGCTATTCG
Found at i:14006145 original size:73 final size:73
Alignment explanation
Indices: 14006014--14006194 Score: 254
Period size: 73 Copynumber: 2.5 Consensus size: 73
14006004 CTGCTAATGC
* *
14006014 TCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAGGCCCAACGACGCCGTTTT
1 TCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTT
14006079 CTGAGCAT
66 CTGAGCAT
* * * * * * *
14006087 TCGGGGATTTAGTGGCGATTTTGAGAAAGCGCCGTAAAAAAACCTAATCCCAATGACGCTGTTTT
1 TCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTT
14006152 CTGAGCAT
66 CTGAGCAT
* * *
14006160 TCAGGGATTTGGCGGTGTTTTTCAGAAAGCGCCGC
1 TCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGC
14006195 TAATGCTCAG
Statistics
Matches: 92, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
73 92 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (73 bp):
TCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTT
CTGAGCAT
Found at i:14006335 original size:115 final size:114
Alignment explanation
Indices: 14006105--14006374 Score: 342
Period size: 115 Copynumber: 2.4 Consensus size: 114
14006095 TTAGTGGCGA
* * * * *
14006105 TTTTGAGAAAGCGCCGTAAAAAAACCTAATCCCAATGACGCTGTTTTCTGAGCATTCAGGGATTT
1 TTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCTATTTTCTAAGCATTCAGGGATTT
* ** * * *
14006170 GGCGGTGTTTTTCAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGT
66 AGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAACGACGT
* * * *
14006219 TTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCTATTTTCTAATCTTTTCGGGGATT
1 TTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCTATTTTCTAAGC-ATTCAGGGATT
* * *
14006284 TAGTGGCATTTTTAAGAAAGCGCTGCTAATGCTCAGGGCTTTAACGACGT
65 TAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAACGACGT
* * *
14006334 TTTTGACAATGCGCCGCAAAAAAACCTAAGACCAACGACGC
1 TTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGC
14006375 CGTTTTTTTA
Statistics
Matches: 133, Mismatches: 22, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
114 46 0.35
115 87 0.65
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (114 bp):
TTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCTATTTTCTAAGCATTCAGGGATTT
AGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAACGACGT
Found at i:14006390 original size:115 final size:114
Alignment explanation
Indices: 14006105--14006410 Score: 324
Period size: 115 Copynumber: 2.7 Consensus size: 114
14006095 TTAGTGGCGA
* * ** * ** * * * **
14006105 TTTTGAGAAAGCGCCGTAAAAAAACCTAATCCCAATGACGCTGTTTTCTGAGCATTCAGGGATTT
1 TTTTGACAAAGCGCCGCAAAAAAACCTAAGACCAACGACGCCATTTTCTAACCTTTTGGGGATTT
* ** * * *
14006170 GGCGGTGTTTTTCAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGT
66 AGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAACGACGT
* * * * *
14006219 TTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCTATTTTCTAATCTTTTCGGGGATT
1 TTTTGACAAAGCGCCGCAAAAAAACCTAAGACCAACGACGCCATTTTCTAACCTTTT-GGGGATT
* * *
14006284 TAGTGGCATTTTTAAGAAAGCGCTGCTAATGCTCAGGGCTTTAACGACGT
65 TAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAACGACGT
* * * *
14006334 TTTTGACAATGCGCCGCAAAAAAACCTAAGACCAACGACGCCGTTTTTTTACCTTTTGGGGATTT
1 TTTTGACAAAGCGCCGCAAAAAAACCTAAGACCAACGACGCCATTTTCTAACCTTTTGGGGATTT
*
14006399 AGCGGCGTTTTT
66 AGCGGCATTTTT
14006411 GGTAAAGCAC
Statistics
Matches: 161, Mismatches: 30, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
114 66 0.41
115 95 0.59
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (114 bp):
TTTTGACAAAGCGCCGCAAAAAAACCTAAGACCAACGACGCCATTTTCTAACCTTTTGGGGATTT
AGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAACGACGT
Found at i:14006439 original size:188 final size:188
Alignment explanation
Indices: 14006204--14006545 Score: 440
Period size: 188 Copynumber: 1.8 Consensus size: 188
14006194 CTAATGCTCA
* * * *
14006204 GGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCTATTTTCTA
1 GGGATTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAAACATAAGCCCAACGACGCCATTTTCTA
* * * * *
14006269 ATCTTTTC-GGGGATTTAGTGGCATTTTTAAGAAAGCGCTGCTAATGCTCAGGGCTTTAAC-GAC
66 A-CCTTTCGGGGGATTTAGCGGCATTTTTAAGAAAGCACCGCTAATGCTCAGGGATTTAACAG-C
*
14006332 GTTTTTGACAATGCGCCGCAAAAAAACCTAAGACCAACGACGCCGTTTTTTTACCTTTTG
129 GTTTTTGACAAAGCGCCGCAAAAAAACCTAAGACCAACGACGCCGTTTTTTTACCTTTTG
*
14006392 GGGATTTAGCGGCGTTTTTG-GTAAAGCACCG-AAAAAAGACATAAGCCCAACGACGCCGTTTTC
1 GGGATTTAGCGGCGTTTTTGAG-AAAGCACCGCAAAAAA-ACATAAGCCCAACGACGCCATTTTC
* * * * * * *
14006455 TGACCTTTCGGGGGATTTAGCGGCGTTTTTAATACAGCACCGCTAATGCTCTGGGATTTAGCAGT
64 TAACCTTTCGGGGGATTTAGCGGCATTTTTAAGAAAGCACCGCTAATGCTCAGGGATTTAACAGC
**
14006520 GTTTTTGGGAAAGCGCCGCAAAAAAA
129 GTTTTTGACAAAGCGCCGCAAAAAAA
14006546 TTATTTGTCT
Statistics
Matches: 130, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
187 12 0.09
188 117 0.90
189 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (188 bp):
GGGATTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAAACATAAGCCCAACGACGCCATTTTCTA
ACCTTTCGGGGGATTTAGCGGCATTTTTAAGAAAGCACCGCTAATGCTCAGGGATTTAACAGCGT
TTTTGACAAAGCGCCGCAAAAAAACCTAAGACCAACGACGCCGTTTTTTTACCTTTTG
Found at i:14006496 original size:74 final size:72
Alignment explanation
Indices: 14006351--14006496 Score: 202
Period size: 73 Copynumber: 2.0 Consensus size: 72
14006341 AATGCGCCGC
* * * * **
14006351 AAAAAAACCTAAGACCAACGACGCCGTTTTTTTACCTTTTGGGGATTTAGCGGCGTTTTTGGTAA
1 AAAAAAACATAAGACCAACGACGCCGTTTTCTGACCTTTGGGGGATTTAGCGGCGTTTTTAATAA
14006416 AGCACCG
66 AGCACCG
*
14006423 AAAAAAGACATAAGCCCAACGACGCCGTTTTCTGACCTTTCGGGGGATTTAGCGGCGTTTTTAAT
1 AAAAAA-ACATAAGACCAACGACGCCGTTTTCTGACCTTT-GGGGGATTTAGCGGCGTTTTTAAT
*
14006488 ACAGCACCG
64 AAAGCACCG
14006497 CTAATGCTCT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
72 6 0.09
73 29 0.45
74 29 0.45
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (72 bp):
AAAAAAACATAAGACCAACGACGCCGTTTTCTGACCTTTGGGGGATTTAGCGGCGTTTTTAATAA
AGCACCG
Found at i:14007267 original size:6 final size:7
Alignment explanation
Indices: 14007242--14007276 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
14007232 TTTGGATTTG
14007242 GGGTTTA
1 GGGTTTA
*
14007249 CGGTTTA
1 GGGTTTA
14007256 GGGTTT-
1 GGGTTTA
14007262 GGGTTTA
1 GGGTTTA
14007269 GGGTTTA
1 GGGTTTA
14007276 G
1 G
14007277 TTTTCTATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.11, C:0.03, G:0.43, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Found at i:14007268 original size:13 final size:13
Alignment explanation
Indices: 14007250--14007274 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14007240 TGGGGTTTAC
14007250 GGTTTAGGGTTTG
1 GGTTTAGGGTTTG
14007263 GGTTTAGGGTTT
1 GGTTTAGGGTTT
14007275 AGTTTTCTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.44, T:0.48
Consensus pattern (13 bp):
GGTTTAGGGTTTG
Found at i:14010132 original size:16 final size:16
Alignment explanation
Indices: 14010091--14010169 Score: 83
Period size: 16 Copynumber: 5.0 Consensus size: 16
14010081 AAGTTCAAAT
*
14010091 TTCATAACTTACGTAA
1 TTCATAACTTACATAA
14010107 TTTGCATAACTTACATAA
1 -TT-CATAACTTACATAA
14010125 TTCATAACTTACATAA
1 TTCATAACTTACATAA
* *
14010141 TT--TAAATT-TATAA
1 TTCATAACTTACATAA
*
14010154 TACATAACTTACATAA
1 TTCATAACTTACATAA
14010170 CTTATTAATA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
13 5 0.10
14 5 0.10
15 5 0.10
16 20 0.38
17 4 0.08
18 13 0.25
ACGTcount: A:0.43, C:0.15, G:0.03, T:0.39
Consensus pattern (16 bp):
TTCATAACTTACATAA
Found at i:14010139 original size:9 final size:9
Alignment explanation
Indices: 14010093--14010173 Score: 60
Period size: 9 Copynumber: 9.0 Consensus size: 9
14010083 GTTCAAATTT
14010093 CATAACTTA
1 CATAACTTA
* * *
14010102 CGTAATTTG
1 CATAACTTA
14010111 CATAACTTA
1 CATAACTTA
14010120 CATAA-TT-
1 CATAACTTA
14010127 CATAACTTA
1 CATAACTTA
*
14010136 CATAATTTA
1 CATAACTTA
* *
14010145 AATTTATA-ATA
1 CA--TA-ACTTA
14010156 CATAACTTA
1 CATAACTTA
14010165 CATAACTTA
1 CATAACTTA
14010174 TTAATATTTA
Statistics
Matches: 55, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
7 5 0.09
8 5 0.09
9 39 0.71
11 5 0.09
12 1 0.02
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:14010198 original size:19 final size:18
Alignment explanation
Indices: 14010174--14010229 Score: 73
Period size: 17 Copynumber: 3.2 Consensus size: 18
14010164 ACATAACTTA
14010174 TTAATATTTATATATAGTT
1 TTAATATTTATATATA-TT
14010193 TTAATA--TATATAT-TT
1 TTAATATTTATATATATT
*
14010208 TTAAAATTTATATATATT
1 TTAATATTTATATATATT
14010226 TTAA
1 TTAA
14010230 AAATTGATAC
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
15 7 0.21
17 14 0.42
18 6 0.18
19 6 0.18
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
TTAATATTTATATATATT
Found at i:14010219 original size:15 final size:15
Alignment explanation
Indices: 14010183--14010231 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
14010173 ATTAATATTT
* *
14010183 ATATATAGTTTTAAT
1 ATATATATTTTTAAA
14010198 ATATATATTTTTAAA
1 ATATATATTTTTAAA
14010213 ATTTATATATATTTTAAA
1 A--TATATAT-TTTTAAA
14010231 A
1 A
14010232 ATTGATACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 14 0.48
17 7 0.24
18 8 0.28
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
ATATATATTTTTAAA
Found at i:14010232 original size:19 final size:19
Alignment explanation
Indices: 14010197--14010234 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14010187 ATAGTTTTAA
*
14010197 TATATATATTTTTAAAATT
1 TATATATATTTTAAAAATT
14010216 TATATATATTTTAAAAATT
1 TATATATATTTTAAAAATT
14010235 GATACATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATATATATTTTAAAAATT
Found at i:14010286 original size:23 final size:20
Alignment explanation
Indices: 14010236--14010298 Score: 58
Period size: 23 Copynumber: 3.0 Consensus size: 20
14010226 TTAAAAATTG
14010236 ATACATTACATAACTTACATA
1 ATACA-TACATAACTTACATA
*
14010257 ACCTACATACATAAACTTACA-C
1 A--TACATACAT-AACTTACATA
*
14010279 ATA-ATACATAACTTATATA
1 ATACATACATAACTTACATA
14010298 A
1 A
14010299 CTTAAATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
18 7 0.20
19 7 0.20
20 2 0.06
21 1 0.03
22 6 0.17
23 12 0.34
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (20 bp):
ATACATACATAACTTACATA
Found at i:14010349 original size:31 final size:31
Alignment explanation
Indices: 14010253--14010362 Score: 98
Period size: 31 Copynumber: 3.4 Consensus size: 31
14010243 ACATAACTTA
* *
14010253 CATAACCTACATACATAAA-CTTACA-CATAAT
1 CATAACTTACATACATAAATATTA-ATCAT-AT
* * *
14010284 ACATAACTTATATAACTTAAATTTATCAATCATAT
1 -CATAACTTACAT-ACATAAA--TATTAATCATAT
14010319 CATAACTTACATACATAAATATTAATCATAT
1 CATAACTTACATACATAAATATTAATCATAT
*
14010350 CACAACTTACATA
1 CATAACTTACATA
14010363 ACCAACATAA
Statistics
Matches: 64, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
31 23 0.36
32 10 0.16
33 12 0.19
34 11 0.17
35 3 0.05
36 5 0.08
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (31 bp):
CATAACTTACATACATAAATATTAATCATAT
Found at i:14010394 original size:24 final size:24
Alignment explanation
Indices: 14010360--14010418 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
14010350 CACAACTTAC
* * *
14010360 ATAACCAACATAATGACTTATATA
1 ATAACCTACATAATAACTTACATA
14010384 ATAACCTACATAATAACTTACATA
1 ATAACCTACATAATAACTTACATA
14010408 ATAA--TACATAA
1 ATAACCTACATAA
14010419 CCTACATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 7 0.22
24 25 0.78
ACGTcount: A:0.53, C:0.17, G:0.02, T:0.29
Consensus pattern (24 bp):
ATAACCTACATAATAACTTACATA
Found at i:14010396 original size:12 final size:12
Alignment explanation
Indices: 14010360--14010411 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
14010350 CACAACTTAC
*
14010360 ATAACCAACATA
1 ATAACCTACATA
* * *
14010372 ATGACTTATATA
1 ATAACCTACATA
14010384 ATAACCTACATA
1 ATAACCTACATA
*
14010396 ATAACTTACATA
1 ATAACCTACATA
14010408 ATAA
1 ATAA
14010412 TACATAACCT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.52, C:0.17, G:0.02, T:0.29
Consensus pattern (12 bp):
ATAACCTACATA
Found at i:14011620 original size:3 final size:3
Alignment explanation
Indices: 14011606--14011642 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
14011596 TTTTTAGTCC
*
14011606 TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14011643 TCTTCTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:14011861 original size:21 final size:22
Alignment explanation
Indices: 14011812--14011861 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
14011802 GTAATATGCT
*
14011812 ATTATTTTAAATTATTATTGAC
1 ATTATTTTAAATTATCATTGAC
*
14011834 A-TGTTTTAAATTTATCA-T-AC
1 ATTATTTTAAA-TTATCATTGAC
14011854 ATTATTTT
1 ATTATTTT
14011862 TTTAAAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
20 3 0.13
21 14 0.61
22 6 0.26
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (22 bp):
ATTATTTTAAATTATCATTGAC
Found at i:14016856 original size:11 final size:11
Alignment explanation
Indices: 14016828--14016867 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
14016818 TCCAATTCAC
14016828 AAAAAAAGAAAG
1 AAAAAAA-AAAG
14016840 AGAAAAAAAAAG
1 A-AAAAAAAAAG
*
14016852 AAAAAAAGAAG
1 AAAAAAAAAAG
14016863 AAAAA
1 AAAAA
14016868 TCAAAATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 14 0.54
12 6 0.23
13 6 0.23
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:14016873 original size:6 final size:6
Alignment explanation
Indices: 14016864--14016898 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
14016854 AAAAAGAAGA
*
14016864 AAAATC AAAATC AAAATT AAAATC AAAATC AAAAT
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAAT
14016899 AACAAATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.69, C:0.11, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATC
Found at i:14016885 original size:18 final size:18
Alignment explanation
Indices: 14016864--14016898 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14016854 AAAAAGAAGA
14016864 AAAATCAAAATCAAAATT
1 AAAATCAAAATCAAAATT
14016882 AAAATCAAAATCAAAAT
1 AAAATCAAAATCAAAAT
14016899 AACAAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.69, C:0.11, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAATCAAAATCAAAATT
Found at i:14016910 original size:18 final size:18
Alignment explanation
Indices: 14016863--14016905 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
14016853 AAAAAAGAAG
14016863 AAAAATCAAAATCAAAAT
1 AAAAATCAAAATCAAAAT
*
14016881 TAAAATCAAAATCAAAAT
1 AAAAATCAAAATCAAAAT
14016899 AACAAAT
1 AA-AAAT
14016906 GAAATGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.19
Consensus pattern (18 bp):
AAAAATCAAAATCAAAAT
Found at i:14017806 original size:14 final size:15
Alignment explanation
Indices: 14017781--14017818 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
14017771 TTGAGTTGGA
14017781 GAAAATATGAAAAA-T
1 GAAAA-ATGAAAAAGT
14017796 GAAAAATGAAAAAGT
1 GAAAAATGAAAAAGT
*
14017811 AAAAAATG
1 GAAAAATG
14017819 GAGAGGCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (15 bp):
GAAAAATGAAAAAGT
Found at i:14019481 original size:259 final size:258
Alignment explanation
Indices: 14019016--14020015 Score: 1576
Period size: 259 Copynumber: 3.9 Consensus size: 258
14019006 AATAGATCAG
*
14019016 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAACCTTATCTT
1 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
* *
14019081 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCTTGGTCAGTAGTGGAATAGGTTG-
66 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGA
* * *
14019145 GGAATATAGCAGATCTTGTCTCCCTAAGCAGTAACGGAGCAGATCGAAGACGACGAATCTTATCT
131 GAAAT-TA-CAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGACGAATCTTATCT
*
14019210 TCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
194 TCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
* *
14019275 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGTGAATCTTATCTT
1 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
* * *
14019340 CAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGTTTAGCAGTGGAATAGGTTGA
66 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGA
14019405 GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGAC-AGCGAAATCTTATCT
131 GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGA-CG-AATCTTATCT
*
14019469 TCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
194 TCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
14019534 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
1 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
* * * * *
14019599 CAAGTGTAAGGAAGCAGATTTAAGCCACAATTCCTATATCCCTGGTTAGTAGTTGAATAGGTTGG
66 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGA
* * * *
14019664 GAAATTACAAATCTTGTCTCCCTAAGCAGTAGCAGAGCAAAT-AGAAGACGACGAATCATATCTT
131 GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCA-AAGACGACGAATCTTATCTT
* *
14019728 CAAGTGTAAAGAAGCAGATTTAAGCCACAAATCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
195 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
* * * * * *
14019792 GAAAATTACAGATCCTGTCTCCCTAAACAATAGTGGAGCAGATCGAAGACGGCAAATCTTATCTT
1 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
* *
14019857 CAAGTGTAAGGAAACAGATTTAAGCCACAAATCCTATATCCCTGGTCAGCAGTGGAATAGGTT-A
66 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGA
* * * * * *
14019921 GGAAATTACAGATCCTGTCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCAAATCTTATCTT
131 -GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGACGAATCTTATCTT
14019986 CAAGTGTAAGGAAGCAGATTTAAGCCACAA
195 CAAGTGTAAGGAAGCAGATTTAAGCCACAA
14020016 ATCATATCTT
Statistics
Matches: 683, Mismatches: 51, Indels: 15
0.91 0.07 0.02
Matches are distributed among these distances:
257 1 0.00
258 313 0.46
259 364 0.53
260 5 0.01
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (258 bp):
GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGA
GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGACGAATCTTATCTTC
AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
Found at i:14019744 original size:388 final size:387
Alignment explanation
Indices: 14019017--14020015 Score: 1601
Period size: 388 Copynumber: 2.6 Consensus size: 387
14019007 ATAGATCAGG
*
14019017 GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCG-AACCTTATCTT
1 GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAAATCTTATCTT
* *
14019081 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCTTGGTCAGTAGTGGAATAGGTT-G
66 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAG
* * *
14019145 GGAATATAGCAGATCTTGTCTCCCTAAGCAGTAACGGAGCAGATCGAAGACGACGAATCTTATCT
131 GAAAT-TA-CAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCT
*
14019210 TCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
194 TCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
* * * ** *
14019275 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGTGAATCTTATCTT
259 GGAAATTACAAATCTTGTCTCCCTAAGCAGTAGCAGAGCAAATCAAAGACGACGAATCATATCTT
* * * *
14019340 CAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGTTTAGCAGTGGAATAGGTTGA
324 CAAGAGTAAAGAAGCAGATTTAAGCCACAAATCCTATATCCCTGGTCAGCAGTGGAATAGGTT-A
* *
14019405 GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACAGCGAAATCTTATCTT
1 GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAAATCTTATCTT
*
14019470 CAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAG
66 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAG
14019535 GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTC
131 GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTC
* * * * *
14019600 AAGTGTAAGGAAGCAGATTTAAGCCACAATTCCTATATCCCTGGTTAGTAGTTGAATAGGTTGGG
196 AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAGG
14019665 AAATTACAAATCTTGTCTCCCTAAGCAGTAGCAGAGCAAAT-AGAAGACGACGAATCATATCTTC
261 AAATTACAAATCTTGTCTCCCTAAGCAGTAGCAGAGCAAATCA-AAGACGACGAATCATATCTTC
*
14019729 AAGTGTAAAGAAGCAGATTTAAGCCACAAATCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
325 AAGAGTAAAGAAGCAGATTTAAGCCACAAATCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
* * * *
14019792 GAAAATTACAGATCCTGTCTCCCTAAACAATAGTGGAGCAGATCGAAGACGGC-AAATCTTATCT
1 G-AAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAAATCTTATCT
* *
14019856 TCAAGTGTAAGGAAACAGATTTAAGCCACAAATCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
65 TCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
* * * *
14019921 GGAAATTACAGATCCTGTCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCAAATCTTATCTT
130 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
14019986 CAAGTGTAAGGAAGCAGATTTAAGCCACAA
195 CAAGTGTAAGGAAGCAGATTTAAGCCACAA
14020016 ATCATATCTT
Statistics
Matches: 568, Mismatches: 39, Indels: 9
0.92 0.06 0.01
Matches are distributed among these distances:
387 167 0.29
388 324 0.57
389 72 0.13
390 5 0.01
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (387 bp):
GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAAATCTTATCTT
CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAG
GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTC
AAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAGG
AAATTACAAATCTTGTCTCCCTAAGCAGTAGCAGAGCAAATCAAAGACGACGAATCATATCTTCA
AGAGTAAAGAAGCAGATTTAAGCCACAAATCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
Found at i:14020018 original size:129 final size:129
Alignment explanation
Indices: 14019016--14020015 Score: 1590
Period size: 129 Copynumber: 7.7 Consensus size: 129
14019006 AATAGATCAG
*
14019016 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAACCTTATCTT
1 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
* *
14019081 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCTTGGTCAGTAGTGGAATAGGTT-
66 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
* * *
14019144 GGGAATATAGCAGATCTTGTCTCCCTAAGCAGTAACGGAGCAGATCGAAGACGACGAATCTTATC
1 GGAAAT-TA-CAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
*
14019209 TTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTT
64 TTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTT
14019274 A
129 A
* *
14019275 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGTGAATCTTATCTT
1 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
* * *
14019340 CAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGTTTAGCAGTGGAATAGGTT-
66 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
* *
14019403 GAGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACAGCGAAATCTTATC
1 G-GAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCG-AATCTTATC
*
14019468 TTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTT
64 TTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTT
14019533 A
129 A
14019534 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
1 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
* * * * *
14019599 CAAGTGTAAGGAAGCAGATTTAAGCCACAATTCCTATATCCCTGGTTAGTAGTTGAATAGGTTG
66 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
* * * * * *
14019663 GGAAATTACAAATCTTGTCTCCCTAAGCAGTAGCAGAGCAAATAGAAGACGACGAATCATATCTT
1 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
* *
14019728 CAAGTGTAAAGAAGCAGATTTAAGCCACAAATCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
66 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
* * * * * *
14019792 GAAAATTACAGATCCTGTCTCCCTAAACAATAGTGGAGCAGATCGAAGACGGCAAATCTTATCTT
1 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
* *
14019857 CAAGTGTAAGGAAACAGATTTAAGCCACAAATCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
66 CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
* * * *
14019921 GGAAATTACAGATCCTGTCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCAAATCTTATCTT
1 GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
14019986 CAAGTGTAAGGAAGCAGATTTAAGCCACAA
66 CAAGTGTAAGGAAGCAGATTTAAGCCACAA
14020016 ATCATATCTT
Statistics
Matches: 809, Mismatches: 57, Indels: 11
0.92 0.06 0.01
Matches are distributed among these distances:
128 6 0.01
129 558 0.69
130 239 0.30
131 6 0.01
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (129 bp):
GGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT
CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTA
Found at i:14020151 original size:44 final size:45
Alignment explanation
Indices: 14020101--14020218 Score: 118
Period size: 45 Copynumber: 2.6 Consensus size: 45
14020091 ATTGCATTAG
* *
14020101 GTCTTATCTCCCTGAGGTTGCAGCGGAGCAGA-CTG-AG-TAAGCAA
1 GTCTTATCTCCCTGAGGTTGCAGAGGAGCACATC-GAAGAT-AGCAA
* * *
14020145 GTCTTATCCCCCTGAAGTTGCAGTAGGA-CACATCGAAGATGGCAA
1 GTCTTATCTCCCTGAGGTTGCAG-AGGAGCACATCGAAGATAGCAA
* *
14020190 ATCTTATCTCCCTGAGGTTGCAGTGGAGC
1 GTCTTATCTCCCTGAGGTTGCAGAGGAGC
14020219 TGATTAAAGC
Statistics
Matches: 60, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
44 28 0.47
45 31 0.52
46 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (45 bp):
GTCTTATCTCCCTGAGGTTGCAGAGGAGCACATCGAAGATAGCAA
Found at i:14020286 original size:44 final size:43
Alignment explanation
Indices: 14020020--14021346 Score: 434
Period size: 44 Copynumber: 30.6 Consensus size: 43
14020010 CCACAAATCA
* * *
14020020 TATCTTCCTAAAGTTGTAGTGGAGCAGATTAAAGTAATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGTAATAGATCT
* * * * ** * * *
14020064 TATCTCTCTAAAGTTGCATTAGAGTGGATT--GCATTAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAATAGATCT
* * * * *
14020105 TATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCA-AGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAA-TAGA-TCT
* * * *** *
14020149 TATCCCCCTGAAGTTGCAGTAGGA-CACATCGAAGATGGCAAATCT
1 TATCTCCCTGAAGTTGCAGT-GGAGCAGAT-TAAG-TAATAGATCT
* * ** *
14020194 TATCTCCCTGAGGTTGCAGTGGAGCTGATTAAAGCCGATA-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAG-TAATAGATCT
* *
14020238 TATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGTAATAGATCT
** * * ** * * * *
14020282 TATCTCTTTGAAGTTACAGTAGAGTGGA-T-CGCATTAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAATAGATCT
* * * * * *
14020323 TATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAA-TAGATCT
* * * *** *
14020367 TATC-CCCGTAAAGTTGTAGTGCGA-CAGATCGAAGATGGCAAATCT
1 TATCTCCC-TGAAGTTGCAGTG-GAGCAGAT-TAAG-TAATAGATCT
* * **
14020412 TATCTCCCTGAGGTTGCAGTGGAGCACATTGAAGCCGATA-AT-T
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAG-TAATAGATCT
* * **
14020455 CTATCTCCCTGAAGTTGTAGTAGAGTGGATTAAAGTAATAGATCT
1 -TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGTAATAGATCT
* * * * ** * * *
14020500 TATCTCTCTGAAGTTACAATAGAGTGGA-T-CG-CATCAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAAT-AGATCT
* * * * * *
14020541 TATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAA-TAGATCT
* * *
14020585 TATCCCCCTGAAGTTGCAGTGG-GACAAATCGAAGATGGAA-A-ATCT
1 TATCTCCCTGAAGTTGCAGTGGAG-CAGAT-TAAG-T--AATAGATCT
* * * *
14020630 TATCTCCCTGAGGTTGCAGTAGAGCAGATTGAAGCCAATA-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAG-TAATAGATCT
* **
14020674 TATCCCCCTGAAGTTGCAGTGGAGTGGATTAAAGTAATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGTAATAGATCT
* * * ** *
14020718 TATCTCTCTGAA---GCAGTAGAGTAGATCGCA-TCA-AG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAGTAATAGATCT
* * * * * * *
14020756 TATCTCCCTGAGGTTACAGCGGAGCAGACTGAGTAAGCAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAA-TAGATCT
* * * ***
14020800 TATCCCCCTGAAGTTGCAGTGGGGCAGATCGAAGTTGGCAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAG-TAATAGATCT
* *
14020845 TATCTCCCT-AAGGTTGCAGTGGAGCAGATTGAAGCTGATA-ATCC
1 TATCTCCCTGAA-GTTGCAGTGGAGCAGATT-AAG-TAATAGATCT
* *
14020889 TATCTCCCTGAAGTTGTAGAGGAGCAGATTAAAGTAATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGTAATAGATCT
* * * * * *
14020933 TATCTCTCTGAAGTTGTAGTAGAGTAGA-T-CG-CATCAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAAT-AGATCT
** * * * * *
14020973 TATCTCCCT-AAGGTCACAGCGGAGAAGACTGAGTAAGCAGATCT
1 TATCTCCCTGAA-GTTGCAGTGGAGCAGATTAAGTAA-TAGATCT
** * *
14021017 TATCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGATGGAA-A-ATAT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAG-T--AATAGATCT
* * ** *
14021061 TATCTCCCTGAGGTTGCAGTGGAGTAGATTGAAGCCGATA-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAG-TAATAGATCT
* * *
14021105 TATCTCCCTGAAGTTGTAGTAGAGCGGATTAAAGTAATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGTAATAGATCT
* * ** * * *
14021149 TATCTCTCTGAAGTTGCAGTAGAGTGGA-T-CG-CATCAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAAT-AGATCT
* * * * *
14021190 TATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGTAAGCAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAA-TAGATCT
* * * * * * *
14021234 TATCCCCCTAAAGTTACAGTGGGGCAGATCGAA-T-ATGGCAAATGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAGTAAT---AGATCT
* * *
14021279 TATCTCCCTGAGGTTGCAAG-GGAGCAGATTGAAGTCGATA-ATCC
1 TATCTCCCTGAAGTTGC-AGTGGAGCAGATT-AAGT-AATAGATCT
* *
14021323 TATCTCCCTGACGTTGTAGTGGAG
1 TATCTCCCTGAAGTTGCAGTGGAG
14021347 TGGATCGAAG
Statistics
Matches: 941, Mismatches: 261, Indels: 162
0.69 0.19 0.12
Matches are distributed among these distances:
38 13 0.01
39 4 0.00
40 30 0.03
41 140 0.15
42 4 0.00
43 54 0.06
44 488 0.52
45 189 0.20
46 13 0.01
47 2 0.00
48 4 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAATAGATCT
Found at i:14020336 original size:218 final size:218
Alignment explanation
Indices: 14019998--14021351 Score: 1995
Period size: 218 Copynumber: 6.2 Consensus size: 218
14019988 AGTGTAAGGA
* * * * * *
14019998 AGCAGATTTAAGCC-ACAAATCATATCTTCCTAAAGTTGTAGTGGAGCAGATTAAAGTAATAGAT
1 AGCAGATTGAAGCCGA-TAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGAT
* * * *
14020062 CTTATCTCTCTAAAGTTGCATTAGAGTGGATTGCATTAGGTCTTATCTCCCTGAGGTTGCAGCGG
65 CTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGG
* * *
14020127 AGCAGACTGAGTAAGCAAGTCTTATCCCCCTGAAGTTGCAGTAGGACACATCGAAGATGGCAAAT
130 AGCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGATGGCAAAT
14020192 CTTATCTCCCTGAGGTTGCAGTGG
195 CTTATCTCCCTGAGGTTGCAGTGG
* *
14020216 AGCTGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* * *
14020281 TTATCTCTTTGAAGTTACAGTAGAGTGGATCGCATTAGGTCTTATCTCCCTGAGGTTGCAGCGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGA
* * * *
14020346 GCAGACTGAGTAAGCAGGTCTTATCCCCGTAAAGTTGTAGTGCGACAGATCGAAGATGGCAAATC
131 GCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGATGGCAAATC
14020411 TTATCTCCCTGAGGTTGCAGTGG
196 TTATCTCCCTGAGGTTGCAGTGG
* * * *
14020434 AGCACATTGAAGCCGATAATTCTATCTCCCTGAAGTTGTAGTAGAGTGGATTAAAGTAATAGATC
1 AGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* *
14020499 TTATCTCTCTGAAGTTACAATAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGA
* *
14020564 GCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGACAAATCGAAGATGGAAAATC
131 GCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGATGGCAAATC
*
14020629 TTATCTCCCTGAGGTTGCAGTAG
196 TTATCTCCCTGAGGTTGCAGTGG
* * * *
14020652 AGCAGATTGAAGCCAATAATCCTATCCCCCTGAAGTTGCAGTGGAGTGGATTAAAGTAATAGATC
1 AGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* * *
14020717 TTATCTCTCTGAA---GCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGGTTACAGCGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGA
* * *
14020779 GCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGATCGAAGTTGGCAGATC
131 GCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGATGGCAAATC
*
14020844 TTATCTCCCTAAGGTTGCAGTGG
196 TTATCTCCCTGAGGTTGCAGTGG
* * *
14020867 AGCAGATTGAAGCTGATAATCCTATCTCCCTGAAGTTGTAGAGGAGCAGATTAAAGTAATAGATC
1 AGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* * * **
14020932 TTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCA-GTCTTATCTCCCTAAGGTCACAGCGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGA
* * * ** * * *
14020996 GAAGACTGAGTAAGCAGATCTTATCTCCCT-AAGCAGTAGT-GGAGCAGATTGAAGATGGAAAAT
131 GCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGA-CAGATCGAAGATGGCAAAT
*
14021059 ATTATCTCCCTGAGGTTGCAGTGG
195 CTTATCTCCCTGAGGTTGCAGTGG
* *
14021083 AGTAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTAGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
*
14021148 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAAGTTGCAGCGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGA
* * * * *
14021213 GCAGACTGAGTAAGCAGGTCTTATCCCCCTAAAGTTACAGTGGGGCAGATCGAATATGGCAAATG
131 GCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGATGGCAAATC
14021278 TTATCTCCCTGAGGTTGCAAG-GG
196 TTATCTCCCTGAGGTTGC-AGTGG
* * *
14021301 AGCAGATTGAAGTCGATAATCCTATCTCCCTGACGTTGTAGTGGAGTGGAT
1 AGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGAT
14021352 CGAAGCACCA
Statistics
Matches: 1023, Mismatches: 104, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
215 198 0.19
216 139 0.14
217 102 0.10
218 579 0.57
219 5 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (218 bp):
AGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGA
GCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGATGGCAAATC
TTATCTCCCTGAGGTTGCAGTGG
Done.